143 |
0.00681 |
0.158 |
b2418 |
pdxK |
-15.34 |
0.008827 |
271 -- 292 |
15 -- 47 |
pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase |
|
_____________270_______________________________293\n_____________|_________________________________|\n5'-CAU...GUCGC_________________________________CAACAGCA-3'\n______________AGGUGGUUU_____ACGGC_AGC_____GUGGG\n______________||||||||:_____||:||_|||_____:||||\n______________UCCACCAAG_____UGUCG_UCG_____UACCC\n3'-UUU...AUUCC_________GACCA_____A___UAAAA_____AAUAC...UCG-5'\n_____________|_________________________________|\n_____________48________________________________14\n |
273 -- 279 |
39 -- 45 |
-26.4553 kcal/mol |
6.54205 kcal/mol |
4.57348 kcal/mol |
270 293@LB@ | |@LB@5'-CAU...GUCGC CAACAGCA-3'@LB@ AGGUGGUUU ACGGC AGC GUGGG@LB@ ||||||||: ||:|| ||| :||||@LB@ UCCACCAAG UGUCG UCG UACCC@LB@3'-UUU...AUUCC GACCA A UAAAA AAUAC...UCG-5'@LB@ | |@LB@ 48 14@LB@@LB@@LB@Energy -15.34 kcal/mol@LB@Hybridization Energy -26.4553 kcal/mol@LB@Unfolding Energy - mRNA 6.54205 kcal/mol@LB@Unfolding Energy - sRNA 4.57348 kcal/mol@LB@@LB@Position - mRNA 271 -- 292@LB@Position - sRNA 15 -- 47@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 39 -- 45@LB@ |
7 |
1.492e-05 |
0.007162 |
b0903 |
pflB |
-20.16 |
0.000088 |
81 -- 115 |
14 -- 49 |
formate C-acetyltransferase 1 anaerobic; pyruvate formate-lyase 1 |
|
_____________80____________________________________116\n_____________|_____________________________________|\n5'-CAC...UUAUC__U________GU____UG_____A___AC_______CAUUU...ACU-3'\n______________GG_GGUGGUUU__UGGU__GGUUG_CAU____UGGGU\n______________||_|||||||:__||||__:|:|:_|||____|||||\n______________CC_CCACCAAG__ACCA__UCGAU_GUA____ACCCA\n3'-UUU...CGAUU__U________G_____UG_____C___AAAU_____AUACA...UCG-5'\n_____________|_____________________________________|\n_____________50____________________________________13\n |
85 -- 91 |
39 -- 45 |
-33.3931 kcal/mol |
8.66349 kcal/mol |
4.57395 kcal/mol |
80 116@LB@ | |@LB@5'-CAC...UUAUC U GU UG A AC CAUUU...ACU-3'@LB@ GG GGUGGUUU UGGU GGUUG CAU UGGGU@LB@ || |||||||: |||| :|:|: ||| |||||@LB@ CC CCACCAAG ACCA UCGAU GUA ACCCA@LB@3'-UUU...CGAUU U G UG C AAAU AUACA...UCG-5'@LB@ | |@LB@ 50 13@LB@@LB@@LB@Energy -20.16 kcal/mol@LB@Hybridization Energy -33.3931 kcal/mol@LB@Unfolding Energy - mRNA 8.66349 kcal/mol@LB@Unfolding Energy - sRNA 4.57395 kcal/mol@LB@@LB@Position - mRNA 81 -- 115@LB@Position - sRNA 14 -- 49@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 39 -- 45@LB@ |
137 |
0.006165 |
0.1512 |
b1024 |
pgaA |
-6.60 |
0.530802 |
267 -- 274 |
1 -- 8 |
biofilm adhesin polysaccharide PGA secretin; OM porin; poly-beta-1 6-N-acetyl-D-glucosamine export protein |
|
_____________266______275\n_____________|________|\n5'-CUC...CCGCA________AGCGA...CUG-3'\n______________UUUUUAGC\n______________||||:|||\n______________AAAAGUCG\n3'-UUU...AUACA________-5'\n_____________|_______|\n_____________9_______1\n |
268 -- 274 |
1 -- 7 |
-8.19691 kcal/mol |
0.802454 kcal/mol |
0.799201 kcal/mol |
266 275@LB@ | |@LB@5'-CUC...CCGCA AGCGA...CUG-3'@LB@ UUUUUAGC@LB@ ||||:|||@LB@ AAAAGUCG@LB@3'-UUU...AUACA -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -6.60 kcal/mol@LB@Hybridization Energy -8.19691 kcal/mol@LB@Unfolding Energy - mRNA 0.802454 kcal/mol@LB@Unfolding Energy - sRNA 0.799201 kcal/mol@LB@@LB@Position - mRNA 267 -- 274@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 1 -- 7@LB@ |
156 |
0.007969 |
0.1694 |
b4025 |
pgi |
-9.69 |
0.190093 |
4 -- 41 |
3 -- 36 |
glucosephosphate isomerase |
|
_____________3_______________________________________42\n_____________|_______________________________________|\n________5'-AGC__G_______U__ACG______GUC___CGGA_______UCCAC...AAG-3'\n______________GG_GCGGUUG_CA____AUGGG___AUG____UUUUUCA\n______________||_:|:|:|:_||____|||||___|||____|||||||\n______________CC_UGUCGAU_GU____UACCC___UAC____AAAAAGU\n3'-UUU...AAGGA__A_______C__AAAA_____AA_______________CG-5'\n_____________|_______________________________________|\n_____________37______________________________________2\n |
35 -- 41 |
3 -- 9 |
-21.0745 kcal/mol |
9.8922 kcal/mol |
1.49503 kcal/mol |
3 42@LB@ | |@LB@ 5'-AGC G U ACG GUC CGGA UCCAC...AAG-3'@LB@ GG GCGGUUG CA AUGGG AUG UUUUUCA@LB@ || :|:|:|: || ||||| ||| |||||||@LB@ CC UGUCGAU GU UACCC UAC AAAAAGU@LB@3'-UUU...AAGGA A C AAAA AA CG-5'@LB@ | |@LB@ 37 2@LB@@LB@@LB@Energy -9.69 kcal/mol@LB@Hybridization Energy -21.0745 kcal/mol@LB@Unfolding Energy - mRNA 9.8922 kcal/mol@LB@Unfolding Energy - sRNA 1.49503 kcal/mol@LB@@LB@Position - mRNA 4 -- 41@LB@Position - sRNA 3 -- 36@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 3 -- 9@LB@ |
178 |
0.009929 |
0.1875 |
b1278 |
pgpB |
-11.49 |
0.084643 |
145 -- 171 |
10 -- 41 |
phosphatidylglycerophosphatase B |
|
_____________144______________________________172\n_____________|________________________________|\n5'-GUU...AAUUU_______AA_____________CA________AUUGU...AAC-3'\n______________UUCCUGG_____CUGGCGUUUU____GUUAUG\n______________|||||||_____||:||:||||____||||||\n______________AAGGACC_____GAUCGUAAAA____CAAUAC\n3'-UUU...CCACC_______AUGUC__________UACC______AAAAA...UCG-5'\n_____________|________________________________|\n_____________42_______________________________9\n |
157 -- 163 |
20 -- 26 |
-25.137 kcal/mol |
9.03979 kcal/mol |
4.60294 kcal/mol |
144 172@LB@ | |@LB@5'-GUU...AAUUU AA CA AUUGU...AAC-3'@LB@ UUCCUGG CUGGCGUUUU GUUAUG@LB@ ||||||| ||:||:|||| ||||||@LB@ AAGGACC GAUCGUAAAA CAAUAC@LB@3'-UUU...CCACC AUGUC UACC AAAAA...UCG-5'@LB@ | |@LB@ 42 9@LB@@LB@@LB@Energy -11.49 kcal/mol@LB@Hybridization Energy -25.137 kcal/mol@LB@Unfolding Energy - mRNA 9.03979 kcal/mol@LB@Unfolding Energy - sRNA 4.60294 kcal/mol@LB@@LB@Position - mRNA 145 -- 171@LB@Position - sRNA 10 -- 41@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 20 -- 26@LB@ |
117 |
0.004938 |
0.1407 |
b2560 |
pgpC |
-11.09 |
0.102961 |
189 -- 233 |
4 -- 51 |
phosphatidylglycerophosphatase C membrane bound |
|
_____________188_________________________________________________234\n_____________|___________________________________________________|\n5'-UCG...GUCCA______UA__________CA__UCACG_____CG_________________GACUU...GCC-3'\n______________GAGGAG__UGGUU__UGG__AC_____AGCGU__UGUGG____UGUUUUUU\n______________:|||||__|||||__|||__||_____|||:|__|:|||____|||||||:\n______________UUCCUC__ACCAA__ACC__UG_____UCGUA__AUACC____ACAAAAAG\n3'-UUU...UCCGA______C______GG___A___UCGA______AA_____CAAU________UCG-5'\n_____________|___________________________________________________|\n_____________52__________________________________________________3\n |
227 -- 233 |
4 -- 10 |
-30.0966 kcal/mol |
14.318 kcal/mol |
4.69283 kcal/mol |
188 234@LB@ | |@LB@5'-UCG...GUCCA UA CA UCACG CG GACUU...GCC-3'@LB@ GAGGAG UGGUU UGG AC AGCGU UGUGG UGUUUUUU@LB@ :||||| ||||| ||| || |||:| |:||| |||||||:@LB@ UUCCUC ACCAA ACC UG UCGUA AUACC ACAAAAAG@LB@3'-UUU...UCCGA C GG A UCGA AA CAAU UCG-5'@LB@ | |@LB@ 52 3@LB@@LB@@LB@Energy -11.09 kcal/mol@LB@Hybridization Energy -30.0966 kcal/mol@LB@Unfolding Energy - mRNA 14.318 kcal/mol@LB@Unfolding Energy - sRNA 4.69283 kcal/mol@LB@@LB@Position - mRNA 189 -- 233@LB@Position - sRNA 4 -- 51@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 4 -- 10@LB@ |
45 |
0.001037 |
0.07744 |
b0857 |
potI |
-11.49 |
0.084883 |
37 -- 88 |
3 -- 46 |
putrescine ABC transporter permease |
|
_____________36______________________________________________________89\n_____________|_______________________________________________________|\n5'-CCG...UGCUC_________C________AUCAUGAUCGGGC____GC_____CAAGA________AUAAC...AUU-3'\n______________GGUGG__CC_GG_ACAGC_____________GCGU__UAUGG_____GUUUUUCA\n______________|||||__||_||_|||||_____________||:|__|||||_____||||||||\n______________CCACC__GG_CC_UGUCG_____________CGUA__AUACC_____CAAAAAGU\n3'-UUU...UUCCU_____AA__A__A_____AU_______________AA_____CAAUA________CG-5'\n_____________|_______________________________________________________|\n_____________47______________________________________________________2\n |
82 -- 88 |
3 -- 9 |
-33.7321 kcal/mol |
17.6344 kcal/mol |
4.60931 kcal/mol |
36 89@LB@ | |@LB@5'-CCG...UGCUC C AUCAUGAUCGGGC GC CAAGA AUAAC...AUU-3'@LB@ GGUGG CC GG ACAGC GCGU UAUGG GUUUUUCA@LB@ ||||| || || ||||| ||:| ||||| ||||||||@LB@ CCACC GG CC UGUCG CGUA AUACC CAAAAAGU@LB@3'-UUU...UUCCU AA A A AU AA CAAUA CG-5'@LB@ | |@LB@ 47 2@LB@@LB@@LB@Energy -11.49 kcal/mol@LB@Hybridization Energy -33.7321 kcal/mol@LB@Unfolding Energy - mRNA 17.6344 kcal/mol@LB@Unfolding Energy - sRNA 4.60931 kcal/mol@LB@@LB@Position - mRNA 37 -- 88@LB@Position - sRNA 3 -- 46@LB@Position Seed - mRNA 82 -- 88@LB@Position Seed - sRNA 3 -- 9@LB@ |
101 |
0.003756 |
0.123 |
b2972 |
pppA |
-13.47 |
0.029286 |
211 -- 222 |
1 -- 12 |
bifunctional prepilin leader peptidase/ methylase |
|
_____________210__________223\n_____________|____________|\n5'-UAA...UUUUG____________AAUAC...GGC-3'\n______________AUGUUUUUCAGC\n______________||||||||||||\n______________UACAAAAAGUCG\n3'-UUU...CCCAA____________-5'\n_____________|___________|\n_____________13__________1\n |
216 -- 222 |
1 -- 7 |
-17.018 kcal/mol |
2.64154 kcal/mol |
0.904394 kcal/mol |
210 223@LB@ | |@LB@5'-UAA...UUUUG AAUAC...GGC-3'@LB@ AUGUUUUUCAGC@LB@ ||||||||||||@LB@ UACAAAAAGUCG@LB@3'-UUU...CCCAA -5'@LB@ | |@LB@ 13 1@LB@@LB@@LB@Energy -13.47 kcal/mol@LB@Hybridization Energy -17.018 kcal/mol@LB@Unfolding Energy - mRNA 2.64154 kcal/mol@LB@Unfolding Energy - sRNA 0.904394 kcal/mol@LB@@LB@Position - mRNA 211 -- 222@LB@Position - sRNA 1 -- 12@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 1 -- 7@LB@ |
129 |
0.005449 |
0.142 |
b2502 |
ppx |
-11.35 |
0.090652 |
145 -- 164 |
17 -- 36 |
exopolyphosphatase |
|
_____________144__________________165\n_____________|____________________|\n5'-GGC...GUACG__C__________A______ACUAC...GUG-3'\n______________GG_GCAGUUGGCG_UUUAUG\n______________||_:|||:|:||:_||||||\n______________CC_UGUCGAUCGU_AAAUAC\n3'-UUU...AAGGA__A__________A______CCAAU...UCG-5'\n_____________|____________________|\n_____________37___________________16\n |
151 -- 157 |
24 -- 30 |
-21.6291 kcal/mol |
8.82633 kcal/mol |
1.44969 kcal/mol |
144 165@LB@ | |@LB@5'-GGC...GUACG C A ACUAC...GUG-3'@LB@ GG GCAGUUGGCG UUUAUG@LB@ || :|||:|:||: ||||||@LB@ CC UGUCGAUCGU AAAUAC@LB@3'-UUU...AAGGA A A CCAAU...UCG-5'@LB@ | |@LB@ 37 16@LB@@LB@@LB@Energy -11.35 kcal/mol@LB@Hybridization Energy -21.6291 kcal/mol@LB@Unfolding Energy - mRNA 8.82633 kcal/mol@LB@Unfolding Energy - sRNA 1.44969 kcal/mol@LB@@LB@Position - mRNA 145 -- 164@LB@Position - sRNA 17 -- 36@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 24 -- 30@LB@ |
69 |
0.001909 |
0.09081 |
b1830 |
prc |
-10.38 |
0.141777 |
185 -- 217 |
2 -- 49 |
carboxy-terminal protease for penicillin-binding protein 3 |
|
_____________184______________________________________________218\n_____________|________________________________________________|\n5'-CGA...GAAAC_______________GC__________GAAC_________________GCUUA...CGG-3'\n______________GGAGG_____CC_GG__CAG___GCAU__________AUGUUUUUUAG\n______________|||||_____||_||__|||___||||__________||||||||:||\n______________CCUCC_____GG_CC__GUC___CGUA__________UACAAAAAGUC\n3'-UUU...CGAUU_____ACCAA__A__AU___GAU____AAAUACCCAA___________G-5'\n_____________|________________________________________________|\n_____________50_______________________________________________1\n |
211 -- 217 |
2 -- 8 |
-24.9215 kcal/mol |
9.93043 kcal/mol |
4.60955 kcal/mol |
184 218@LB@ | |@LB@5'-CGA...GAAAC GC GAAC GCUUA...CGG-3'@LB@ GGAGG CC GG CAG GCAU AUGUUUUUUAG@LB@ ||||| || || ||| |||| ||||||||:||@LB@ CCUCC GG CC GUC CGUA UACAAAAAGUC@LB@3'-UUU...CGAUU ACCAA A AU GAU AAAUACCCAA G-5'@LB@ | |@LB@ 50 1@LB@@LB@@LB@Energy -10.38 kcal/mol@LB@Hybridization Energy -24.9215 kcal/mol@LB@Unfolding Energy - mRNA 9.93043 kcal/mol@LB@Unfolding Energy - sRNA 4.60955 kcal/mol@LB@@LB@Position - mRNA 185 -- 217@LB@Position - sRNA 2 -- 49@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 2 -- 8@LB@ |