| 15 |
0.0001004 |
0.02121 |
b2416 |
ptsI |
-14.97 |
0.011388 |
179 -- 212 |
1 -- 32 |
PEP-protein phosphotransferase of PTS system (enzyme I) |
|
_____________178_________________________________213\n_____________|___________________________________|\n5'-GUG...AAAAU____CACA____AGG___________A___CA___AUUUU...CCG-3'\n______________CAGU____AGUA___UA_GGGUUAUG_UUU__GGC\n______________|||:____||:|___||_||||||||_|||__:||\n______________GUCG____UCGU___AU_CCCAAUAC_AAA__UCG\n3'-UUU...ACCAU____A_______AAA__A________A___AG___-5'\n_____________|__________________________________|\n_____________33_________________________________1\n |
197 -- 203 |
10 -- 16 |
-21.5882 kcal/mol |
5.12711 kcal/mol |
1.49075 kcal/mol |
178 213@LB@ | |@LB@5'-GUG...AAAAU CACA AGG A CA AUUUU...CCG-3'@LB@ CAGU AGUA UA GGGUUAUG UUU GGC@LB@ |||: ||:| || |||||||| ||| :||@LB@ GUCG UCGU AU CCCAAUAC AAA UCG@LB@3'-UUU...ACCAU A AAA A A AG -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -14.97 kcal/mol@LB@Hybridization Energy -21.5882 kcal/mol@LB@Unfolding Energy - mRNA 5.12711 kcal/mol@LB@Unfolding Energy - sRNA 1.49075 kcal/mol@LB@@LB@Position - mRNA 179 -- 212@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 22 |
0.0002072 |
0.03165 |
b2341 |
fadJ |
-8.08 |
0.343546 |
182 -- 217 |
1 -- 44 |
enoyl-CoA hydratase/epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase |
|
_____________181__________________________________________218\n_____________|____________________________________________|\n5'-CAU...GGCAA__________A________AAUA______AA____ACA______GUUUA...CGG-3'\n______________UGGUUCU_GG___GGC_GG______AUGG___AUG____UCAGC\n______________||||||:_||___:||_:|______||||___|||____|||||\n______________ACCAAGG_CC___UCG_UC______UACC___UAC____AGUCG\n3'-UUU...CCUCC_______A__AUG___A__GUAAAA____CAA___AAAA_____-5'\n_____________|___________________________________________|\n_____________45__________________________________________1\n |
182 -- 188 |
38 -- 44 |
-22.4043 kcal/mol |
9.71146 kcal/mol |
4.60934 kcal/mol |
181 218@LB@ | |@LB@5'-CAU...GGCAA A AAUA AA ACA GUUUA...CGG-3'@LB@ UGGUUCU GG GGC GG AUGG AUG UCAGC@LB@ ||||||: || :|| :| |||| ||| |||||@LB@ ACCAAGG CC UCG UC UACC UAC AGUCG@LB@3'-UUU...CCUCC A AUG A GUAAAA CAA AAAA -5'@LB@ | |@LB@ 45 1@LB@@LB@@LB@Energy -8.08 kcal/mol@LB@Hybridization Energy -22.4043 kcal/mol@LB@Unfolding Energy - mRNA 9.71146 kcal/mol@LB@Unfolding Energy - sRNA 4.60934 kcal/mol@LB@@LB@Position - mRNA 182 -- 217@LB@Position - sRNA 1 -- 44@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 56 |
0.001349 |
0.08097 |
b0287 |
yagU |
-10.29 |
0.147287 |
182 -- 196 |
14 -- 37 |
DUF1440 family inner membrane acid resistance protein |
|
_____________181______________________197\n_____________|________________________|\n5'-AAC...CAUAA________________________AGAUA...GGG-3'\n______________UGGUACA___AGCA______GGGU\n______________|||||||___||||______||||\n______________ACCAUGU___UCGU______CCCA\n3'-UUU...CAAGG_______CGA____AAAAUA____AUACA...UCG-5'\n_____________|________________________|\n_____________38_______________________13\n |
182 -- 188 |
31 -- 37 |
-16.1787 kcal/mol |
3.22484 kcal/mol |
2.65978 kcal/mol |
181 197@LB@ | |@LB@5'-AAC...CAUAA AGAUA...GGG-3'@LB@ UGGUACA AGCA GGGU@LB@ ||||||| |||| ||||@LB@ ACCAUGU UCGU CCCA@LB@3'-UUU...CAAGG CGA AAAAUA AUACA...UCG-5'@LB@ | |@LB@ 38 13@LB@@LB@@LB@Energy -10.29 kcal/mol@LB@Hybridization Energy -16.1787 kcal/mol@LB@Unfolding Energy - mRNA 3.22484 kcal/mol@LB@Unfolding Energy - sRNA 2.65978 kcal/mol@LB@@LB@Position - mRNA 182 -- 196@LB@Position - sRNA 14 -- 37@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 140 |
0.006493 |
0.1559 |
b1916 |
sdiA |
-12.48 |
0.051059 |
182 -- 224 |
1 -- 50 |
quorum-sensing transcriptional activator |
|
_____________181_________________________________________________225\n_____________|___________________________________________________|\n5'-UGU...CUCUC_____C_____G_____U______U___GGAUAA___AU____________UGGCG...AGG-3'\n______________AGGGG___GUU_C_GGU_UA_CUA_GCA_______GG_____UUUUUCAGC\n______________|||:|___|||_|_|||_:|_|||_|||_______||_____|||||||||\n______________UCCUC___CAA_G_CCA_GU_GAU_CGU_______CC_____AAAAAGUCG\n3'-UUU...CCGAU_____CAC___G_A___U__C_______AAAAUAC__AAUAC_________-5'\n_____________|__________________________________________________|\n_____________51_________________________________________________1\n |
218 -- 224 |
1 -- 7 |
-26.3158 kcal/mol |
9.17132 kcal/mol |
4.6634 kcal/mol |
181 225@LB@ | |@LB@5'-UGU...CUCUC C G U U GGAUAA AU UGGCG...AGG-3'@LB@ AGGGG GUU C GGU UA CUA GCA GG UUUUUCAGC@LB@ |||:| ||| | ||| :| ||| ||| || |||||||||@LB@ UCCUC CAA G CCA GU GAU CGU CC AAAAAGUCG@LB@3'-UUU...CCGAU CAC G A U C AAAAUAC AAUAC -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -12.48 kcal/mol@LB@Hybridization Energy -26.3158 kcal/mol@LB@Unfolding Energy - mRNA 9.17132 kcal/mol@LB@Unfolding Energy - sRNA 4.6634 kcal/mol@LB@@LB@Position - mRNA 182 -- 224@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 186 |
0.01069 |
0.1919 |
b1614 |
ydgA |
-8.85 |
0.262719 |
182 -- 191 |
16 -- 25 |
DUF945 family protein |
|
_____________181________192\n_____________|__________|\n5'-ACA...GAUUU__________AUAAU...UCG-3'\n______________CAUUUUAUGG\n______________||||||||||\n______________GUAAAAUACC\n3'-UUU...CGAUC__________CAAUA...UCG-5'\n_____________|__________|\n_____________26_________15\n |
185 -- 191 |
16 -- 22 |
-11.3536 kcal/mol |
2.1555 kcal/mol |
0.346409 kcal/mol |
181 192@LB@ | |@LB@5'-ACA...GAUUU AUAAU...UCG-3'@LB@ CAUUUUAUGG@LB@ ||||||||||@LB@ GUAAAAUACC@LB@3'-UUU...CGAUC CAAUA...UCG-5'@LB@ | |@LB@ 26 15@LB@@LB@@LB@Energy -8.85 kcal/mol@LB@Hybridization Energy -11.3536 kcal/mol@LB@Unfolding Energy - mRNA 2.1555 kcal/mol@LB@Unfolding Energy - sRNA 0.346409 kcal/mol@LB@@LB@Position - mRNA 182 -- 191@LB@Position - sRNA 16 -- 25@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 169 |
0.009174 |
0.1803 |
b1467 |
narY |
-12.55 |
0.049142 |
183 -- 194 |
25 -- 36 |
nitrate reductase 2 (NRZ) beta subunit |
|
_____________182__________195\n_____________|____________|\n5'-CGC...GAUCA_______GA___GAAAA...GCG-3'\n______________GGUACAG__GGC\n______________|||||||__:||\n______________CCAUGUC__UCG\n3'-UUU...AAGGA_______GA___UAAAA...UCG-5'\n_____________|____________|\n_____________37___________24\n |
183 -- 189 |
30 -- 36 |
-16.0252 kcal/mol |
2.04549 kcal/mol |
1.42738 kcal/mol |
182 195@LB@ | |@LB@5'-CGC...GAUCA GA GAAAA...GCG-3'@LB@ GGUACAG GGC@LB@ ||||||| :||@LB@ CCAUGUC UCG@LB@3'-UUU...AAGGA GA UAAAA...UCG-5'@LB@ | |@LB@ 37 24@LB@@LB@@LB@Energy -12.55 kcal/mol@LB@Hybridization Energy -16.0252 kcal/mol@LB@Unfolding Energy - mRNA 2.04549 kcal/mol@LB@Unfolding Energy - sRNA 1.42738 kcal/mol@LB@@LB@Position - mRNA 183 -- 194@LB@Position - sRNA 25 -- 36@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 69 |
0.001909 |
0.09081 |
b1830 |
prc |
-10.38 |
0.141777 |
185 -- 217 |
2 -- 49 |
carboxy-terminal protease for penicillin-binding protein 3 |
|
_____________184______________________________________________218\n_____________|________________________________________________|\n5'-CGA...GAAAC_______________GC__________GAAC_________________GCUUA...CGG-3'\n______________GGAGG_____CC_GG__CAG___GCAU__________AUGUUUUUUAG\n______________|||||_____||_||__|||___||||__________||||||||:||\n______________CCUCC_____GG_CC__GUC___CGUA__________UACAAAAAGUC\n3'-UUU...CGAUU_____ACCAA__A__AU___GAU____AAAUACCCAA___________G-5'\n_____________|________________________________________________|\n_____________50_______________________________________________1\n |
211 -- 217 |
2 -- 8 |
-24.9215 kcal/mol |
9.93043 kcal/mol |
4.60955 kcal/mol |
184 218@LB@ | |@LB@5'-CGA...GAAAC GC GAAC GCUUA...CGG-3'@LB@ GGAGG CC GG CAG GCAU AUGUUUUUUAG@LB@ ||||| || || ||| |||| ||||||||:||@LB@ CCUCC GG CC GUC CGUA UACAAAAAGUC@LB@3'-UUU...CGAUU ACCAA A AU GAU AAAUACCCAA G-5'@LB@ | |@LB@ 50 1@LB@@LB@@LB@Energy -10.38 kcal/mol@LB@Hybridization Energy -24.9215 kcal/mol@LB@Unfolding Energy - mRNA 9.93043 kcal/mol@LB@Unfolding Energy - sRNA 4.60955 kcal/mol@LB@@LB@Position - mRNA 185 -- 217@LB@Position - sRNA 2 -- 49@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 2 -- 8@LB@ |
| 18 |
0.0001426 |
0.02662 |
b1824 |
yobF |
-14.57 |
0.014857 |
186 -- 218 |
1 -- 36 |
DUF2527 family heat-induced protein |
|
_____________185__________________________________219\n_____________|____________________________________|\n5'-GCC...AACGA____________UG______U__GGCA_________AAAGA...UGU-3'\n______________GGUACAGUU__C__UUUAUG_GU_____UUUUCAGU\n______________|||||||:|__|__||||||_||_____|||||||:\n______________CCAUGUCGA__G__AAAUAC_CA_____AAAAGUCG\n3'-UUU...AAGGA_________UC_UA______C__AUACA________-5'\n_____________|___________________________________|\n_____________37__________________________________1\n |
212 -- 218 |
1 -- 7 |
-24.9268 kcal/mol |
8.86182 kcal/mol |
1.49509 kcal/mol |
185 219@LB@ | |@LB@5'-GCC...AACGA UG U GGCA AAAGA...UGU-3'@LB@ GGUACAGUU C UUUAUG GU UUUUCAGU@LB@ |||||||:| | |||||| || |||||||:@LB@ CCAUGUCGA G AAAUAC CA AAAAGUCG@LB@3'-UUU...AAGGA UC UA C AUACA -5'@LB@ | |@LB@ 37 1@LB@@LB@@LB@Energy -14.57 kcal/mol@LB@Hybridization Energy -24.9268 kcal/mol@LB@Unfolding Energy - mRNA 8.86182 kcal/mol@LB@Unfolding Energy - sRNA 1.49509 kcal/mol@LB@@LB@Position - mRNA 186 -- 218@LB@Position - sRNA 1 -- 36@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 31 |
0.0004941 |
0.05357 |
b1272 |
sohB |
-11.06 |
0.104388 |
188 -- 235 |
1 -- 51 |
inner membrane protein S49 peptidase family protein |
|
_____________187__________________________________________________236\n_____________|____________________________________________________|\n5'-UGU...UAACC____U_____AC__G___A__U____U_UGAA_____UU_____________GAAAA...AAC-3'\n______________AAGG_GG_GG__UC_UGG_AU_GUUG_C____UAUGG____UGUUUUU_GGC\n______________||||_||_||__||_|||_|:_|:|:_|____|||||____|||||||_:||\n______________UUCC_CC_CC__AG_ACC_UG_CGAU_G____AUACC____ACAAAAA_UCG\n3'-UUU...UCCGA____U__A__A___G___A__U____C_UAAA_____CAAU_______G___-5'\n_____________|___________________________________________________|\n_____________52__________________________________________________1\n |
226 -- 232 |
5 -- 11 |
-30.2617 kcal/mol |
14.5124 kcal/mol |
4.69283 kcal/mol |
187 236@LB@ | |@LB@5'-UGU...UAACC U AC G A U U UGAA UU GAAAA...AAC-3'@LB@ AAGG GG GG UC UGG AU GUUG C UAUGG UGUUUUU GGC@LB@ |||| || || || ||| |: |:|: | ||||| ||||||| :||@LB@ UUCC CC CC AG ACC UG CGAU G AUACC ACAAAAA UCG@LB@3'-UUU...UCCGA U A A G A U C UAAA CAAU G -5'@LB@ | |@LB@ 52 1@LB@@LB@@LB@Energy -11.06 kcal/mol@LB@Hybridization Energy -30.2617 kcal/mol@LB@Unfolding Energy - mRNA 14.5124 kcal/mol@LB@Unfolding Energy - sRNA 4.69283 kcal/mol@LB@@LB@Position - mRNA 188 -- 235@LB@Position - sRNA 1 -- 51@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 94 |
0.003268 |
0.1162 |
b2687 |
luxS |
-10.18 |
0.155002 |
189 -- 196 |
42 -- 49 |
S-ribosylhomocysteine lyase |
|
_____________188______197\n_____________|________|\n5'-GAA...UUACC________CUAAA...UCA-3'\n______________GGAGGUGG\n______________||||||||\n______________CCUCCACC\n3'-UUU...CGAUU________AAGGA...UCG-5'\n_____________|________|\n_____________50_______41\n |
190 -- 196 |
42 -- 48 |
-16.7111 kcal/mol |
3.76521 kcal/mol |
2.77009 kcal/mol |
188 197@LB@ | |@LB@5'-GAA...UUACC CUAAA...UCA-3'@LB@ GGAGGUGG@LB@ ||||||||@LB@ CCUCCACC@LB@3'-UUU...CGAUU AAGGA...UCG-5'@LB@ | |@LB@ 50 41@LB@@LB@@LB@Energy -10.18 kcal/mol@LB@Hybridization Energy -16.7111 kcal/mol@LB@Unfolding Energy - mRNA 3.76521 kcal/mol@LB@Unfolding Energy - sRNA 2.77009 kcal/mol@LB@@LB@Position - mRNA 189 -- 196@LB@Position - sRNA 42 -- 49@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 42 -- 48@LB@ |
