136 |
0.004892 |
0.1265 |
b2349 |
intS |
-8.19 |
0.139381 |
273 -- 281 |
3 -- 11 |
CPS-53 (KpLE1) prophage; putative prophage CPS-53 integrase |
|
_____________272_______282\n_____________|_________|\n5'-AAG...AUGGC_________UAUGU...GGA-3'\n______________CUGUACCUU\n______________|||||||:|\n______________GACAUGGGA\n3'-AUU...AUGGA_________UG-5'\n_____________|_________|\n_____________12________2\n |
275 -- 281 |
3 -- 9 |
-13.0022 kcal/mol |
1.37836 kcal/mol |
3.45478 kcal/mol |
272 282@LB@ | |@LB@5'-AAG...AUGGC UAUGU...GGA-3'@LB@ CUGUACCUU@LB@ |||||||:|@LB@ GACAUGGGA@LB@3'-AUU...AUGGA UG-5'@LB@ | |@LB@ 12 2@LB@@LB@@LB@Energy -8.19 kcal/mol@LB@Hybridization Energy -13.0022 kcal/mol@LB@Unfolding Energy - mRNA 1.37836 kcal/mol@LB@Unfolding Energy - sRNA 3.45478 kcal/mol@LB@@LB@Position - mRNA 273 -- 281@LB@Position - sRNA 3 -- 11@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 3 -- 9@LB@ |
172 |
0.007198 |
0.1466 |
b2395 |
yfeA |
-7.88 |
0.166321 |
272 -- 292 |
49 -- 69 |
putative diguanylate cyclase |
|
_____________271____________________293\n_____________|______________________|\n5'-ACC...GUACU__________UC____UU____UUCGCCAC-3'\n______________UAUUCAGCUA___CCG__UUAU\n______________||||||||:|___|||__|||:\n______________AUAAGUCGGU___GGC__AAUG\n3'-AUU...AUUUU__________UUA___U_____CACUU...AUG-5'\n_____________|______________________|\n_____________70_____________________48\n |
275 -- 281 |
60 -- 66 |
-16.2546 kcal/mol |
2.18624 kcal/mol |
6.21499 kcal/mol |
271 293@LB@ | |@LB@5'-ACC...GUACU UC UU UUCGCCAC-3'@LB@ UAUUCAGCUA CCG UUAU@LB@ ||||||||:| ||| |||:@LB@ AUAAGUCGGU GGC AAUG@LB@3'-AUU...AUUUU UUA U CACUU...AUG-5'@LB@ | |@LB@ 70 48@LB@@LB@@LB@Energy -7.88 kcal/mol@LB@Hybridization Energy -16.2546 kcal/mol@LB@Unfolding Energy - mRNA 2.18624 kcal/mol@LB@Unfolding Energy - sRNA 6.21499 kcal/mol@LB@@LB@Position - mRNA 272 -- 292@LB@Position - sRNA 49 -- 69@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 60 -- 66@LB@ |
95 |
0.002686 |
0.09947 |
b2419 |
yfeK |
-12.78 |
0.005552 |
57 -- 65 |
1 -- 9 |
uncharacterized protein |
|
_____________56________66\n_____________|_________|\n5'-GUU...CUGCA_________UCUUA...UGG-3'\n______________GUGCCCUAC\n______________||:||||||\n______________CAUGGGAUG\n3'-AUU...GGAGA_________-5'\n_____________|________|\n_____________10_______1\n |
59 -- 65 |
1 -- 7 |
-16.152 kcal/mol |
1.26264 kcal/mol |
2.12872 kcal/mol |
56 66@LB@ | |@LB@5'-GUU...CUGCA UCUUA...UGG-3'@LB@ GUGCCCUAC@LB@ ||:||||||@LB@ CAUGGGAUG@LB@3'-AUU...GGAGA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -12.78 kcal/mol@LB@Hybridization Energy -16.152 kcal/mol@LB@Unfolding Energy - mRNA 1.26264 kcal/mol@LB@Unfolding Energy - sRNA 2.12872 kcal/mol@LB@@LB@Position - mRNA 57 -- 65@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 59 -- 65@LB@Position Seed - sRNA 1 -- 7@LB@ |
152 |
0.006159 |
0.1406 |
b2467 |
nudK |
-9.74 |
0.053801 |
255 -- 261 |
1 -- 7 |
GDP-mannose pyrophosphatase |
|
_____________254_____262\n_____________|_______|\n5'-CAA...AUUUC_______ACAAC...AAG-3'\n______________ACCCUGC\n______________|||||:|\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
255 -- 261 |
1 -- 7 |
-11.9691 kcal/mol |
0.21022 kcal/mol |
2.03949 kcal/mol |
254 262@LB@ | |@LB@5'-CAA...AUUUC ACAAC...AAG-3'@LB@ ACCCUGC@LB@ |||||:|@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.74 kcal/mol@LB@Hybridization Energy -11.9691 kcal/mol@LB@Unfolding Energy - mRNA 0.21022 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 255 -- 261@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 1 -- 7@LB@ |
196 |
0.008709 |
0.1558 |
b2498 |
upp |
-7.14 |
0.244299 |
249 -- 259 |
45 -- 56 |
uracil phosphoribosyltransferase |
|
_____________248__________260\n_____________|____________|\n5'-GGC...UGGGA____________GCAAG...CCG-3'\n______________CUGA_UGCGUGA\n______________|:||_|:|||||\n______________GGCU_AUGCACU\n3'-AUU...GUUUA____A_______UCAUU...AUG-5'\n_____________|____________|\n_____________57___________44\n |
253 -- 259 |
45 -- 51 |
-12.6155 kcal/mol |
3.20986 kcal/mol |
2.27945 kcal/mol |
248 260@LB@ | |@LB@5'-GGC...UGGGA GCAAG...CCG-3'@LB@ CUGA UGCGUGA@LB@ |:|| |:|||||@LB@ GGCU AUGCACU@LB@3'-AUU...GUUUA A UCAUU...AUG-5'@LB@ | |@LB@ 57 44@LB@@LB@@LB@Energy -7.14 kcal/mol@LB@Hybridization Energy -12.6155 kcal/mol@LB@Unfolding Energy - mRNA 3.20986 kcal/mol@LB@Unfolding Energy - sRNA 2.27945 kcal/mol@LB@@LB@Position - mRNA 249 -- 259@LB@Position - sRNA 45 -- 56@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 45 -- 51@LB@ |
87 |
0.00233 |
0.09349 |
b2522 |
sseB |
-8.85 |
0.094489 |
280 -- 288 |
1 -- 9 |
rhodanase-like enzyme sulfur transfer from thiosulfate |
|
_____________279_______289\n_____________|_________|\n5'-GGU...UUUCC_________UGGAA...CCG-3'\n______________GUACUCUAC\n______________||||:||||\n______________CAUGGGAUG\n3'-AUU...GGAGA_________-5'\n_____________|________|\n_____________10_______1\n |
282 -- 288 |
1 -- 7 |
-12.3435 kcal/mol |
1.38525 kcal/mol |
2.12872 kcal/mol |
279 289@LB@ | |@LB@5'-GGU...UUUCC UGGAA...CCG-3'@LB@ GUACUCUAC@LB@ ||||:||||@LB@ CAUGGGAUG@LB@3'-AUU...GGAGA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -8.85 kcal/mol@LB@Hybridization Energy -12.3435 kcal/mol@LB@Unfolding Energy - mRNA 1.38525 kcal/mol@LB@Unfolding Energy - sRNA 2.12872 kcal/mol@LB@@LB@Position - mRNA 280 -- 288@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 282 -- 288@LB@Position Seed - sRNA 1 -- 7@LB@ |
192 |
0.008619 |
0.1558 |
b2561 |
yfhH |
-12.96 |
0.004772 |
194 -- 222 |
4 -- 32 |
putative DNA-binding transcriptional regulator |
|
_____________193____________________________223\n_____________|______________________________|\n5'-CCU...GCGAG________U_____G_______________GUCAG...GCC-3'\n______________GAAAGAUA_GAACG_CUUACUUC_GUAUCC\n______________||||||||_||||:_|||||:||_|||:||\n______________CUUUCUAU_CUUGU_GAAUGGAG_CAUGGG\n3'-AUU...CCAGA______________A________A______AUG-5'\n_____________|______________________________|\n_____________33_____________________________3\n |
195 -- 201 |
25 -- 31 |
-31.2741 kcal/mol |
9.51226 kcal/mol |
8.82263 kcal/mol |
193 223@LB@ | |@LB@5'-CCU...GCGAG U G GUCAG...GCC-3'@LB@ GAAAGAUA GAACG CUUACUUC GUAUCC@LB@ |||||||| ||||: |||||:|| |||:||@LB@ CUUUCUAU CUUGU GAAUGGAG CAUGGG@LB@3'-AUU...CCAGA A A AUG-5'@LB@ | |@LB@ 33 3@LB@@LB@@LB@Energy -12.96 kcal/mol@LB@Hybridization Energy -31.2741 kcal/mol@LB@Unfolding Energy - mRNA 9.51226 kcal/mol@LB@Unfolding Energy - sRNA 8.82263 kcal/mol@LB@@LB@Position - mRNA 194 -- 222@LB@Position - sRNA 4 -- 32@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 25 -- 31@LB@ |
3 |
0 |
0 |
b2564 |
pdxJ |
-5.03 |
0.588876 |
273 -- 283 |
52 -- 62 |
pyridoxine 5'-phosphate synthase |
|
_____________272_________284\n_____________|___________|\n5'-AAA...CUUAC___________GCAGG...UUG-3'\n______________CCGGAUCCGGU\n______________||::|||||:|\n______________GGUUUAGGCUA\n3'-AUU...AAGUC___________AUGCA...AUG-5'\n_____________|___________|\n_____________63__________51\n |
277 -- 283 |
52 -- 58 |
-14.6263 kcal/mol |
4.30712 kcal/mol |
5.31395 kcal/mol |
272 284@LB@ | |@LB@5'-AAA...CUUAC GCAGG...UUG-3'@LB@ CCGGAUCCGGU@LB@ ||::|||||:|@LB@ GGUUUAGGCUA@LB@3'-AUU...AAGUC AUGCA...AUG-5'@LB@ | |@LB@ 63 51@LB@@LB@@LB@Energy -5.03 kcal/mol@LB@Hybridization Energy -14.6263 kcal/mol@LB@Unfolding Energy - mRNA 4.30712 kcal/mol@LB@Unfolding Energy - sRNA 5.31395 kcal/mol@LB@@LB@Position - mRNA 273 -- 283@LB@Position - sRNA 52 -- 62@LB@Position Seed - mRNA 277 -- 283@LB@Position Seed - sRNA 52 -- 58@LB@ |
120 |
0.003999 |
0.1172 |
b2582 |
trxC |
-9.28 |
0.072721 |
206 -- 219 |
4 -- 16 |
thioredoxin 2 |
|
_____________205____________220\n_____________|______________|\n5'-CUC...AUGAA____G_________AUUGU...UUG-3'\n______________UACC_UUUGUACCC\n______________||||_|:|||||||\n______________AUGG_AGACAUGGG\n3'-AUU...GUAGA______________AUG-5'\n_____________|______________|\n_____________17_____________3\n |
213 -- 219 |
4 -- 10 |
-18.1109 kcal/mol |
2.27225 kcal/mol |
6.59015 kcal/mol |
205 220@LB@ | |@LB@5'-CUC...AUGAA G AUUGU...UUG-3'@LB@ UACC UUUGUACCC@LB@ |||| |:|||||||@LB@ AUGG AGACAUGGG@LB@3'-AUU...GUAGA AUG-5'@LB@ | |@LB@ 17 3@LB@@LB@@LB@Energy -9.28 kcal/mol@LB@Hybridization Energy -18.1109 kcal/mol@LB@Unfolding Energy - mRNA 2.27225 kcal/mol@LB@Unfolding Energy - sRNA 6.59015 kcal/mol@LB@@LB@Position - mRNA 206 -- 219@LB@Position - sRNA 4 -- 16@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 4 -- 10@LB@ |
139 |
0.005017 |
0.127 |
b2603 |
yfiR |
-11.92 |
0.011246 |
223 -- 243 |
1 -- 19 |
putative periplasmic inhibitor of YfiN activity |
|
_____________222___________________244\n_____________|_____________________|\n5'-GUA...ACUGU___________AUUC______UGACG...GUA-3'\n______________UCUUACUUCUG____UCCUGC\n______________||||||:||||____:|||:|\n______________AGAAUGGAGAC____GGGAUG\n3'-AUU...CUUGU___________AU________-5'\n_____________|____________________|\n_____________20___________________1\n |
227 -- 233 |
9 -- 15 |
-21.8705 kcal/mol |
2.00959 kcal/mol |
7.96751 kcal/mol |
222 244@LB@ | |@LB@5'-GUA...ACUGU AUUC UGACG...GUA-3'@LB@ UCUUACUUCUG UCCUGC@LB@ ||||||:|||| :|||:|@LB@ AGAAUGGAGAC GGGAUG@LB@3'-AUU...CUUGU AU -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -11.92 kcal/mol@LB@Hybridization Energy -21.8705 kcal/mol@LB@Unfolding Energy - mRNA 2.00959 kcal/mol@LB@Unfolding Energy - sRNA 7.96751 kcal/mol@LB@@LB@Position - mRNA 223 -- 243@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 9 -- 15@LB@ |