| 171 |
0.009384 |
0.1945 |
stm1741 |
N/A |
-12.47 |
0.287408 |
104 -- 168 |
71 -- 131 |
transporter |
|
_____________103_________________________________________________________________________169\n_____________|___________________________________________________________________________|\n5'-GAG...CGACC____CU__________U______CA______UUC___CCUUAAA_______C___A___U_____G_________AUUCG...UGU-3'\n______________GGUG__GGAAGGG_AG_UUUCGC__UGCCGU___CUG_______GUAGACC_GUU_UAA_CGCAA_GGC_UGACA\n______________:|||__::|||||_||_|:||||__|:||||___|||_______|:|||||_:||_:||_|:|||_::|_::|||\n______________UCAC__UUUUCCC_UC_AGAGCG__AUGGCA___GAC_______CGUCUGG_UAA_GUU_GUGUU_UUG_GUUGU\n3'-UUU...GUCCU____U________A_________________CCA___UUAG__________U___C___U_____G___U_____AGUGU...UCA-5'\n_____________|___________________________________________________________________________|\n_____________132_________________________________________________________________________70\n |
139 -- 145 |
95 -- 101 |
-55.0636 kcal/mol |
20.4542 kcal/mol |
20.5091 kcal/mol |
103 169@LB@ | |@LB@5'-GAG...CGACC CU U CA UUC CCUUAAA C A U G AUUCG...UGU-3'@LB@ GGUG GGAAGGG AG UUUCGC UGCCGU CUG GUAGACC GUU UAA CGCAA GGC UGACA@LB@ :||| ::||||| || |:|||| |:|||| ||| |:||||| :|| :|| |:||| ::| ::|||@LB@ UCAC UUUUCCC UC AGAGCG AUGGCA GAC CGUCUGG UAA GUU GUGUU UUG GUUGU@LB@3'-UUU...GUCCU U A CCA UUAG U C U G U AGUGU...UCA-5'@LB@ | |@LB@ 132 70@LB@@LB@@LB@Energy -12.47 kcal/mol@LB@Hybridization Energy -55.0636 kcal/mol@LB@Unfolding Energy - mRNA 20.4542 kcal/mol@LB@Unfolding Energy - sRNA 20.5091 kcal/mol@LB@@LB@Position - mRNA 104 -- 168@LB@Position - sRNA 71 -- 131@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 95 -- 101@LB@ |
| 175 |
0.009595 |
0.1945 |
stm0268 |
N/A |
-12.50 |
0.284574 |
64 -- 117 |
80 -- 130 |
type VI secretion protein |
|
_____________63__________________________________________________________118\n_____________|___________________________________________________________|\n5'-GUU...CCGGC__________AUAACA______A__________AU________A______U________CGUAU...GAC-3'\n______________AGGGUAG_CU______CGCUAC____GUUUGAA__UCGCGGAC_AAUU_C_GACGCAGC\n______________|||||||_||______||||||____||:||||__||||:|||_||||_|_:||:||:|\n______________UCCCAUC_GA______GCGAUG____CAGACUU__AGCGUCUG_UUAA_G_UUGUGUUG\n3'-UUU...CUUUU_______A______________GCAC_________________G____C_U________UUGUG...UCA-5'\n_____________|___________________________________________________________|\n_____________131_________________________________________________________79\n |
111 -- 117 |
80 -- 86 |
-48.3519 kcal/mol |
16.091 kcal/mol |
19.1381 kcal/mol |
63 118@LB@ | |@LB@5'-GUU...CCGGC AUAACA A AU A U CGUAU...GAC-3'@LB@ AGGGUAG CU CGCUAC GUUUGAA UCGCGGAC AAUU C GACGCAGC@LB@ ||||||| || |||||| ||:|||| ||||:||| |||| | :||:||:|@LB@ UCCCAUC GA GCGAUG CAGACUU AGCGUCUG UUAA G UUGUGUUG@LB@3'-UUU...CUUUU A GCAC G C U UUGUG...UCA-5'@LB@ | |@LB@ 131 79@LB@@LB@@LB@Energy -12.50 kcal/mol@LB@Hybridization Energy -48.3519 kcal/mol@LB@Unfolding Energy - mRNA 16.091 kcal/mol@LB@Unfolding Energy - sRNA 19.1381 kcal/mol@LB@@LB@Position - mRNA 64 -- 117@LB@Position - sRNA 80 -- 130@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 51 |
0.001912 |
0.1324 |
stm2692 |
N/A |
-10.31 |
0.546971 |
162 -- 173 |
130 -- 141 |
putative HlyD family secretion protein |
|
_____________161__________174\n_____________|____________|\n5'-GUU...CCGUC____________AUGAA...CGU-3'\n______________GGGAGUGGAAAA\n______________||:||||:||||\n______________CCUUCACUUUUU\n3'-UUU...CAUGU____________CCCAU...UCA-5'\n_____________|____________|\n_____________142__________129\n |
166 -- 172 |
131 -- 137 |
-15.3652 kcal/mol |
2.02429 kcal/mol |
2.83702 kcal/mol |
161 174@LB@ | |@LB@5'-GUU...CCGUC AUGAA...CGU-3'@LB@ GGGAGUGGAAAA@LB@ ||:||||:||||@LB@ CCUUCACUUUUU@LB@3'-UUU...CAUGU CCCAU...UCA-5'@LB@ | |@LB@ 142 129@LB@@LB@@LB@Energy -10.31 kcal/mol@LB@Hybridization Energy -15.3652 kcal/mol@LB@Unfolding Energy - mRNA 2.02429 kcal/mol@LB@Unfolding Energy - sRNA 2.83702 kcal/mol@LB@@LB@Position - mRNA 162 -- 173@LB@Position - sRNA 130 -- 141@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 131 -- 137@LB@ |
| 74 |
0.003449 |
0.1596 |
stm1129 |
N/A |
-19.64 |
0.020096 |
190 -- 238 |
139 -- 186 |
N-acetylmannosamine-6-phosphate 2-epimerase |
stm3337 |
_____________189__________________________________239\n_____________|____________________________________|\n5'-AUA...UGGAU________UAGC_____U__AACA_________C__AAACG...AAA-3'\n______________GUCACUAU____CAGGC_GG____AAGUGUACA_GA\n______________:|||||||____|||:|_||____||:||||||_||\n______________UAGUGAUA____GUCUG_CC____UUUACAUGU_CU\n3'-UUU...GUAAU________CCU______U__CA___________C__UCACU...UCA-5'\n_____________|____________________________________|\n_____________187__________________________________138\n |
229 -- 235 |
142 -- 148 |
-26.4502 kcal/mol |
8.56913 kcal/mol |
5.67007 kcal/mol |
189 239@LB@ | |@LB@5'-AUA...UGGAU UAGC U AACA C AAACG...AAA-3'@LB@ GUCACUAU CAGGC GG AAGUGUACA GA@LB@ :||||||| |||:| || ||:|||||| ||@LB@ UAGUGAUA GUCUG CC UUUACAUGU CU@LB@3'-UUU...GUAAU CCU U CA C UCACU...UCA-5'@LB@ | |@LB@ 187 138@LB@@LB@@LB@Energy -19.64 kcal/mol@LB@Hybridization Energy -26.4502 kcal/mol@LB@Unfolding Energy - mRNA 8.56913 kcal/mol@LB@Unfolding Energy - sRNA 5.67007 kcal/mol@LB@@LB@Position - mRNA 190 -- 238@LB@Position - sRNA 139 -- 186@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 142 -- 148@LB@ |
| 27 |
0.0006872 |
0.08814 |
stm1806 |
nhaB |
-13.59 |
0.196266 |
64 -- 136 |
66 -- 135 |
Na+/H+ antiporter NhaB |
|
_____________63___________________________________________________________________________137\n_____________|____________________________________________________________________________|\n5'-AGC...AUGAA_________GAUCAAG______AUU______U_____CU______AUC_U____G__UU__UU____U________CUCGC...CAU-3'\n______________GAAAAAGGG_______GC_ACC____UCUGA_AUCGC__GCCAAU___G_UAAG_AC__GC__GCAU__CGUCGCG\n______________|||||||||_______||_|||____|||||_|||||__:|||||___|_:||:_||__:|__:||:__|:||:|:\n______________CUUUUUCCC_______CG_UGG____AGACU_UAGCG__UGGUUA___C_GUUU_UG__UG__UGUG__GUAGUGU\n3'-UUU...CUUCA_________AUCAGAG__A___CACC___________UC______A________G__U___U_____UU_______UGGCA...UCA-5'\n_____________|____________________________________________________________________________|\n_____________136__________________________________________________________________________65\n |
130 -- 136 |
66 -- 72 |
-51.3167 kcal/mol |
14.8404 kcal/mol |
22.5826 kcal/mol |
63 137@LB@ | |@LB@5'-AGC...AUGAA GAUCAAG AUU U CU AUC U G UU UU U CUCGC...CAU-3'@LB@ GAAAAAGGG GC ACC UCUGA AUCGC GCCAAU G UAAG AC GC GCAU CGUCGCG@LB@ ||||||||| || ||| ||||| ||||| :||||| | :||: || :| :||: |:||:|:@LB@ CUUUUUCCC CG UGG AGACU UAGCG UGGUUA C GUUU UG UG UGUG GUAGUGU@LB@3'-UUU...CUUCA AUCAGAG A CACC UC A G U U UU UGGCA...UCA-5'@LB@ | |@LB@ 136 65@LB@@LB@@LB@Energy -13.59 kcal/mol@LB@Hybridization Energy -51.3167 kcal/mol@LB@Unfolding Energy - mRNA 14.8404 kcal/mol@LB@Unfolding Energy - sRNA 22.5826 kcal/mol@LB@@LB@Position - mRNA 64 -- 136@LB@Position - sRNA 66 -- 135@LB@Position Seed - mRNA 130 -- 136@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 120 |
0.006002 |
0.1758 |
stm2925 |
nlpD |
-17.26 |
0.050371 |
258 -- 274 |
153 -- 170 |
lipoprotein NlpD |
|
_____________257________________275\n_____________|__________________|\n5'-GUU...UGGUU___________U______UUGUA...CGG-3'\n______________UCACUAUGG_C_GGCAGG\n______________|||||||||_|_|:||||\n______________AGUGAUACC_G_CUGUCC\n3'-UUU...UAAUU_________U_U______CAUUU...UCA-5'\n_____________|__________________|\n_____________171________________152\n |
260 -- 266 |
162 -- 168 |
-24.411 kcal/mol |
4.59255 kcal/mol |
3.4766 kcal/mol |
257 275@LB@ | |@LB@5'-GUU...UGGUU U UUGUA...CGG-3'@LB@ UCACUAUGG C GGCAGG@LB@ ||||||||| | |:||||@LB@ AGUGAUACC G CUGUCC@LB@3'-UUU...UAAUU U U CAUUU...UCA-5'@LB@ | |@LB@ 171 152@LB@@LB@@LB@Energy -17.26 kcal/mol@LB@Hybridization Energy -24.411 kcal/mol@LB@Unfolding Energy - mRNA 4.59255 kcal/mol@LB@Unfolding Energy - sRNA 3.4766 kcal/mol@LB@@LB@Position - mRNA 258 -- 274@LB@Position - sRNA 153 -- 170@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 162 -- 168@LB@ |
| 141 |
0.007251 |
0.182 |
stm2325 |
nuoE |
-19.46 |
0.021521 |
159 -- 233 |
56 -- 129 |
NADH-quinone oxidoreductase subunit E |
|
_____________158_____________________________________________________________________________234\n_____________|_______________________________________________________________________________|\n5'-AUG...UAUCU_______A___AUU____UAU___A_____________CUAAUUAU______G_________AC___A___________UUUGA...GUG-3'\n______________GGGUAGU_UCG___UUGU___GUC_GA__UGUGGACCG________GCACGA_AAU_CAACA__CAC_AACCG_AGGCU\n______________|||||||_|||___::||___|||_||__:|::||||:________:|||:|_||:_|||||__|||_|||||_|:||:\n______________CCCAUCA_AGC___GGCA___CAG_CU__GCGUCUGGU________UGUGUU_UUG_GUUGU__GUG_UUGGC_UUCGG\n3'-UUU...UUUUU_______G___GAU____C_____A__UA_________UAACGUU_______G___U_____A__________A_____UUUUC...UCA-5'\n_____________|_______________________________________________________________________________|\n_____________130_____________________________________________________________________________55\n |
159 -- 165 |
123 -- 129 |
-58.9967 kcal/mol |
15.8863 kcal/mol |
27.1281 kcal/mol |
158 234@LB@ | |@LB@5'-AUG...UAUCU A AUU UAU A CUAAUUAU G AC A UUUGA...GUG-3'@LB@ GGGUAGU UCG UUGU GUC GA UGUGGACCG GCACGA AAU CAACA CAC AACCG AGGCU@LB@ ||||||| ||| ::|| ||| || :|::||||: :|||:| ||: ||||| ||| ||||| |:||:@LB@ CCCAUCA AGC GGCA CAG CU GCGUCUGGU UGUGUU UUG GUUGU GUG UUGGC UUCGG@LB@3'-UUU...UUUUU G GAU C A UA UAACGUU G U A A UUUUC...UCA-5'@LB@ | |@LB@ 130 55@LB@@LB@@LB@Energy -19.46 kcal/mol@LB@Hybridization Energy -58.9967 kcal/mol@LB@Unfolding Energy - mRNA 15.8863 kcal/mol@LB@Unfolding Energy - sRNA 27.1281 kcal/mol@LB@@LB@Position - mRNA 159 -- 233@LB@Position - sRNA 56 -- 129@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 123 -- 129@LB@ |
| 148 |
0.007836 |
0.1845 |
stm2318 |
nuoL |
-12.84 |
0.254324 |
144 -- 178 |
37 -- 76 |
NADH-quinone oxidoreductase subunit L |
|
_____________143___________________179\n_____________|_____________________|\n5'-GGG...AGACC_____U____U__________UUCUC...UUG-3'\n______________GAUGG_CAGG___GAUGUACA\n______________||::|_||||___:|||||||\n______________CUGUC_GUCC___UUACAUGU\n3'-UUU...GAUAC_____U____CAU________CCUUC...UCA-5'\n_____________|_____________________|\n_____________77____________________36\n |
82 -- 88 |
142 -- 148 |
-19.9967 kcal/mol |
7.20144 kcal/mol |
3.50251 kcal/mol |
143 179@LB@ | |@LB@5'-GGG...AGACC U U UUCUC...UUG-3'@LB@ GAUGG CAGG GAUGUACA@LB@ ||::| |||| :|||||||@LB@ CUGUC GUCC UUACAUGU@LB@3'-UUU...GAUAC U CAU CCUUC...UCA-5'@LB@ | |@LB@ 77 36@LB@@LB@@LB@Energy -12.84 kcal/mol@LB@Hybridization Energy -19.9967 kcal/mol@LB@Unfolding Energy - mRNA 7.20144 kcal/mol@LB@Unfolding Energy - sRNA 3.50251 kcal/mol@LB@@LB@Position - mRNA 144 -- 178@LB@Position - sRNA 37 -- 76@LB@Position Seed - mRNA 82 -- 88@LB@Position Seed - sRNA 142 -- 148@LB@ |
| 21 |
0.000482 |
0.08173 |
stm1057 |
pepN |
-18.92 |
0.026522 |
201 -- 244 |
36 -- 81 |
aminopeptidase N |
|
_____________200______________245\n_____________|________________|\n5'-CUU...UUUAU___________C____GCCAA...AAA-3'\n______________GACACAACAGC_ACAA\n______________:||||||||:|_||||\n______________UUGUGUUGUUG_UGUU\n3'-UUU...AACGU________________GUAGU...UCA-5'\n_____________|________________|\n_____________82_______________35\n |
207 -- 213 |
77 -- 83 |
-17.6161 kcal/mol |
1.99149 kcal/mol |
3.56182 kcal/mol |
200 245@LB@ | |@LB@5'-CUU...UUUAU C GCCAA...AAA-3'@LB@ GACACAACAGC ACAA@LB@ :||||||||:| ||||@LB@ UUGUGUUGUUG UGUU@LB@3'-UUU...AACGU GUAGU...UCA-5'@LB@ | |@LB@ 82 35@LB@@LB@@LB@Energy -18.92 kcal/mol@LB@Hybridization Energy -17.6161 kcal/mol@LB@Unfolding Energy - mRNA 1.99149 kcal/mol@LB@Unfolding Energy - sRNA 3.56182 kcal/mol@LB@@LB@Position - mRNA 201 -- 244@LB@Position - sRNA 36 -- 81@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 77 -- 83@LB@ |
| 76 |
0.003538 |
0.1596 |
stm3058 |
pepP |
-14.75 |
0.129287 |
129 -- 167 |
36 -- 78 |
Xaa-Pro aminopeptidase |
|
_____________128_________________168\n_____________|___________________|\n5'-CGA...CUGGC___________CCG_____GCCGC...GCA-3'\n______________GCAAAUGCAGC___GCAGC\n______________|||||::||:|___:||:|\n______________CGUUUGUGUUG___UGUUG\n3'-UUU...GUUAA___________UUG_____UAGUG...UCA-5'\n_____________|___________________|\n_____________79__________________35\n |
249 -- 255 |
80 -- 86 |
-18.5262 kcal/mol |
6.77337 kcal/mol |
3.80362 kcal/mol |
128 168@LB@ | |@LB@5'-CGA...CUGGC CCG GCCGC...GCA-3'@LB@ GCAAAUGCAGC GCAGC@LB@ |||||::||:| :||:|@LB@ CGUUUGUGUUG UGUUG@LB@3'-UUU...GUUAA UUG UAGUG...UCA-5'@LB@ | |@LB@ 79 35@LB@@LB@@LB@Energy -14.75 kcal/mol@LB@Hybridization Energy -18.5262 kcal/mol@LB@Unfolding Energy - mRNA 6.77337 kcal/mol@LB@Unfolding Energy - sRNA 3.80362 kcal/mol@LB@@LB@Position - mRNA 129 -- 167@LB@Position - sRNA 36 -- 78@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 80 -- 86@LB@ |
