28 |
0.0008326 |
0.09021 |
b2563 |
acpS |
-7.40 |
0.086911 |
170 -- 193 |
37 -- 61 |
holo-[acyl-carrier-protein] synthase 1 |
|
_____________169_______________________194\n_____________|_________________________|\n5'-GCC...AGAAA______GU___GAU__U________GUGGC...GCG-3'\n______________UGAAGC___CU___GC_GGAAGCGC\n______________||||:|___||___||_:|||||:|\n______________ACUUUG___GA___CG_UCUUCGUG\n3'-UUU...GCCCU______AAC__AUU__U________AAUUU...CAA-5'\n_____________|_________________________|\n_____________62________________________36\n |
187 -- 193 |
37 -- 43 |
-21.5547 kcal/mol |
6.80255 kcal/mol |
7.3495 kcal/mol |
169 194@LB@ | |@LB@5'-GCC...AGAAA GU GAU U GUGGC...GCG-3'@LB@ UGAAGC CU GC GGAAGCGC@LB@ ||||:| || || :|||||:|@LB@ ACUUUG GA CG UCUUCGUG@LB@3'-UUU...GCCCU AAC AUU U AAUUU...CAA-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -7.40 kcal/mol@LB@Hybridization Energy -21.5547 kcal/mol@LB@Unfolding Energy - mRNA 6.80255 kcal/mol@LB@Unfolding Energy - sRNA 7.3495 kcal/mol@LB@@LB@Position - mRNA 170 -- 193@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 37 -- 43@LB@ |
77 |
0.004637 |
0.1935 |
b0407 |
yajC |
-7.39 |
0.087827 |
147 -- 158 |
37 -- 48 |
SecYEG protein translocase auxillary subunit |
|
_____________146__________159\n_____________|____________|\n5'-UCU...UCAGG____________CACCU...UUU-3'\n______________GGCGAGAAGUAC\n______________:||:|||||:||\n______________UCGUUCUUCGUG\n3'-UUU...CGAAU____________AAUUU...CAA-5'\n_____________|____________|\n_____________49___________36\n |
152 -- 158 |
37 -- 43 |
-17.5904 kcal/mol |
4.37033 kcal/mol |
5.83483 kcal/mol |
146 159@LB@ | |@LB@5'-UCU...UCAGG CACCU...UUU-3'@LB@ GGCGAGAAGUAC@LB@ :||:|||||:||@LB@ UCGUUCUUCGUG@LB@3'-UUU...CGAAU AAUUU...CAA-5'@LB@ | |@LB@ 49 36@LB@@LB@@LB@Energy -7.39 kcal/mol@LB@Hybridization Energy -17.5904 kcal/mol@LB@Unfolding Energy - mRNA 4.37033 kcal/mol@LB@Unfolding Energy - sRNA 5.83483 kcal/mol@LB@@LB@Position - mRNA 147 -- 158@LB@Position - sRNA 37 -- 48@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 37 -- 43@LB@ |
102 |
0.008217 |
0.2595 |
b4220 |
tamA |
-7.38 |
0.088103 |
40 -- 47 |
39 -- 46 |
translocation and assembly module for autotransporter export outer membrane subunit |
|
_____________39_______48\n_____________|________|\n5'-CGC...UGUAA________GUAUU...GAC-3'\n______________CAAGAGGC\n______________|||||:||\n______________GUUCUUCG\n3'-UUU...AAUUC________UGAAU...CAA-5'\n_____________|________|\n_____________47_______38\n |
41 -- 47 |
39 -- 45 |
-10.989 kcal/mol |
0.983473 kcal/mol |
2.62555 kcal/mol |
39 48@LB@ | |@LB@5'-CGC...UGUAA GUAUU...GAC-3'@LB@ CAAGAGGC@LB@ |||||:||@LB@ GUUCUUCG@LB@3'-UUU...AAUUC UGAAU...CAA-5'@LB@ | |@LB@ 47 38@LB@@LB@@LB@Energy -7.38 kcal/mol@LB@Hybridization Energy -10.989 kcal/mol@LB@Unfolding Energy - mRNA 0.983473 kcal/mol@LB@Unfolding Energy - sRNA 2.62555 kcal/mol@LB@@LB@Position - mRNA 40 -- 47@LB@Position - sRNA 39 -- 46@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 39 -- 45@LB@ |
41 |
0.001644 |
0.1292 |
b1918 |
yecS |
-7.37 |
0.088723 |
192 -- 214 |
37 -- 60 |
ABC family putative inner membrane permease |
|
_____________191_______________________215\n_____________|_________________________|\n5'-GGC...CUCCG__________CAU_______A____ACAAC...GCU-3'\n______________GAAAC__GCU___GCAAGAA_GUAU\n______________|||||__|||___|||||||_|:|:\n______________CUUUG__CGA___CGUUCUU_CGUG\n3'-UUU...CCCUA_____AA___AUU____________AAUUU...CAA-5'\n_____________|_________________________|\n_____________61________________________36\n |
203 -- 209 |
41 -- 47 |
-18.5053 kcal/mol |
4.89056 kcal/mol |
6.24651 kcal/mol |
191 215@LB@ | |@LB@5'-GGC...CUCCG CAU A ACAAC...GCU-3'@LB@ GAAAC GCU GCAAGAA GUAU@LB@ ||||| ||| ||||||| |:|:@LB@ CUUUG CGA CGUUCUU CGUG@LB@3'-UUU...CCCUA AA AUU AAUUU...CAA-5'@LB@ | |@LB@ 61 36@LB@@LB@@LB@Energy -7.37 kcal/mol@LB@Hybridization Energy -18.5053 kcal/mol@LB@Unfolding Energy - mRNA 4.89056 kcal/mol@LB@Unfolding Energy - sRNA 6.24651 kcal/mol@LB@@LB@Position - mRNA 192 -- 214@LB@Position - sRNA 37 -- 60@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 41 -- 47@LB@ |
164 |
0.01824 |
0.3566 |
b1854 |
pykA |
-7.33 |
0.090768 |
1 -- 31 |
25 -- 60 |
pyruvate kinase II |
|
______________1___________________________________32\n______________|___________________________________|\n___________5'-_____GG__CA_____________________A___CGUUU...ACG-3'\n______________GAAGC__GU______AAGAAGCGCU_GAAGGA_UCG\n______________|||:|__|:______|||||||:||_:||::|_|||\n______________CUUUG__CG______UUCUUCGUGA_UUUUUU_AGC\n3'-UUU...CCCUA_____AA__AAUUCG__________A______A___AAUGU...CAA-5'\n_____________|____________________________________|\n_____________61___________________________________24\n |
15 -- 21 |
36 -- 42 |
-23.5606 kcal/mol |
9.95433 kcal/mol |
6.27609 kcal/mol |
1 32@LB@ | |@LB@ 5'- GG CA A CGUUU...ACG-3'@LB@ GAAGC GU AAGAAGCGCU GAAGGA UCG@LB@ |||:| |: |||||||:|| :||::| |||@LB@ CUUUG CG UUCUUCGUGA UUUUUU AGC@LB@3'-UUU...CCCUA AA AAUUCG A A AAUGU...CAA-5'@LB@ | |@LB@ 61 24@LB@@LB@@LB@Energy -7.33 kcal/mol@LB@Hybridization Energy -23.5606 kcal/mol@LB@Unfolding Energy - mRNA 9.95433 kcal/mol@LB@Unfolding Energy - sRNA 6.27609 kcal/mol@LB@@LB@Position - mRNA 1 -- 31@LB@Position - sRNA 25 -- 60@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 36 -- 42@LB@ |
165 |
0.01827 |
0.3566 |
b2937 |
speB |
-7.30 |
0.092452 |
5 -- 22 |
25 -- 41 |
agmatinase |
|
_____________4__________________23\n_____________|__________________|\n_______5'-CAAC___UC_____________AGGCA...CAG-3'\n______________AGU__CUUGAAGAGUUCG\n______________||:__|||:||:|:||||\n______________UCG__GAAUUUUUUAAGC\n3'-UUU...GUUCU___U______________AAUGU...CAA-5'\n_____________|__________________|\n_____________42_________________24\n |
16 -- 22 |
25 -- 31 |
-14.9284 kcal/mol |
5.98061 kcal/mol |
1.64839 kcal/mol |
4 23@LB@ | |@LB@ 5'-CAAC UC AGGCA...CAG-3'@LB@ AGU CUUGAAGAGUUCG@LB@ ||: |||:||:|:||||@LB@ UCG GAAUUUUUUAAGC@LB@3'-UUU...GUUCU U AAUGU...CAA-5'@LB@ | |@LB@ 42 24@LB@@LB@@LB@Energy -7.30 kcal/mol@LB@Hybridization Energy -14.9284 kcal/mol@LB@Unfolding Energy - mRNA 5.98061 kcal/mol@LB@Unfolding Energy - sRNA 1.64839 kcal/mol@LB@@LB@Position - mRNA 5 -- 22@LB@Position - sRNA 25 -- 41@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 25 -- 31@LB@ |
119 |
0.01022 |
0.2766 |
b0123 |
cueO |
-7.29 |
0.093095 |
47 -- 59 |
29 -- 41 |
multicopper oxidase (laccase) |
|
_____________46____________60\n_____________|_____________|\n5'-CUG...UACCA__G__________GAUAA...CGU-3'\n______________GG_GCUUAAAGAA\n______________:|_:||||||:||\n______________UC_UGAAUUUUUU\n3'-UUU...GUUCU__G__________AAGCA...CAA-5'\n_____________|_____________|\n_____________42____________28\n |
53 -- 59 |
29 -- 35 |
-11.0144 kcal/mol |
2.10364 kcal/mol |
1.62306 kcal/mol |
46 60@LB@ | |@LB@5'-CUG...UACCA G GAUAA...CGU-3'@LB@ GG GCUUAAAGAA@LB@ :| :||||||:||@LB@ UC UGAAUUUUUU@LB@3'-UUU...GUUCU G AAGCA...CAA-5'@LB@ | |@LB@ 42 28@LB@@LB@@LB@Energy -7.29 kcal/mol@LB@Hybridization Energy -11.0144 kcal/mol@LB@Unfolding Energy - mRNA 2.10364 kcal/mol@LB@Unfolding Energy - sRNA 1.62306 kcal/mol@LB@@LB@Position - mRNA 47 -- 59@LB@Position - sRNA 29 -- 41@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 29 -- 35@LB@ |
64 |
0.003339 |
0.1645 |
b3166 |
truB |
-7.27 |
0.093914 |
187 -- 199 |
36 -- 48 |
tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase |
|
_____________186___________200\n_____________|_____________|\n5'-GGC...ACGAC_________G___AAUGA...AAC-3'\n______________AGCAAGGAG_ACU\n______________||||||:||_|||\n______________UCGUUCUUC_UGA\n3'-UUU...CGAAU_________G___AUUUU...CAA-5'\n_____________|_____________|\n_____________49____________35\n |
189 -- 195 |
40 -- 46 |
-16.8762 kcal/mol |
3.76451 kcal/mol |
5.83861 kcal/mol |
186 200@LB@ | |@LB@5'-GGC...ACGAC G AAUGA...AAC-3'@LB@ AGCAAGGAG ACU@LB@ ||||||:|| |||@LB@ UCGUUCUUC UGA@LB@3'-UUU...CGAAU G AUUUU...CAA-5'@LB@ | |@LB@ 49 35@LB@@LB@@LB@Energy -7.27 kcal/mol@LB@Hybridization Energy -16.8762 kcal/mol@LB@Unfolding Energy - mRNA 3.76451 kcal/mol@LB@Unfolding Energy - sRNA 5.83861 kcal/mol@LB@@LB@Position - mRNA 187 -- 199@LB@Position - sRNA 36 -- 48@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 40 -- 46@LB@ |
179 |
0.02107 |
0.3768 |
b3226 |
nanR |
-7.22 |
0.096643 |
281 -- 296 |
26 -- 41 |
sialic acid-inducible nan operon repressor |
|
_____________280______________297\n_____________|________________|\n5'-AUU...CCGCU_____G_______C__UCCG-3'\n______________GGCGC_UAAAAAA_UC\n______________:||:|_|||||||_||\n______________UCGUG_AUUUUUU_AG\n3'-UUU...GUUCU_____A_______A__CAAUG...CAA-5'\n_____________|________________|\n_____________42_______________25\n |
287 -- 293 |
29 -- 35 |
-11.6683 kcal/mol |
2.7952 kcal/mol |
1.64829 kcal/mol |
280 297@LB@ | |@LB@5'-AUU...CCGCU G C UCCG-3'@LB@ GGCGC UAAAAAA UC@LB@ :||:| ||||||| ||@LB@ UCGUG AUUUUUU AG@LB@3'-UUU...GUUCU A A CAAUG...CAA-5'@LB@ | |@LB@ 42 25@LB@@LB@@LB@Energy -7.22 kcal/mol@LB@Hybridization Energy -11.6683 kcal/mol@LB@Unfolding Energy - mRNA 2.7952 kcal/mol@LB@Unfolding Energy - sRNA 1.64829 kcal/mol@LB@@LB@Position - mRNA 281 -- 296@LB@Position - sRNA 26 -- 41@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 29 -- 35@LB@ |
24 |
0.000694 |
0.09021 |
b2531 |
iscR |
-7.21 |
0.097486 |
53 -- 65 |
27 -- 41 |
isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor |
|
_____________52______________66\n_____________|_______________|\n5'-AUG...AAAAU_______________AAAUA...AAC-3'\n______________GGCACU__GAAGGUU\n______________:|||||__:||::||\n______________UCGUGA__UUUUUAA\n3'-UUU...GUUCU______AU_______GCAAU...CAA-5'\n_____________|_______________|\n_____________42______________26\n |
59 -- 65 |
27 -- 33 |
-10.1429 kcal/mol |
1.29 kcal/mol |
1.6427 kcal/mol |
52 66@LB@ | |@LB@5'-AUG...AAAAU AAAUA...AAC-3'@LB@ GGCACU GAAGGUU@LB@ :||||| :||::||@LB@ UCGUGA UUUUUAA@LB@3'-UUU...GUUCU AU GCAAU...CAA-5'@LB@ | |@LB@ 42 26@LB@@LB@@LB@Energy -7.21 kcal/mol@LB@Hybridization Energy -10.1429 kcal/mol@LB@Unfolding Energy - mRNA 1.29 kcal/mol@LB@Unfolding Energy - sRNA 1.6427 kcal/mol@LB@@LB@Position - mRNA 53 -- 65@LB@Position - sRNA 27 -- 41@LB@Position Seed - mRNA 59 -- 65@LB@Position Seed - sRNA 27 -- 33@LB@ |