102 |
0.005164 |
0.1728 |
stm0668 |
ybeY |
-18.23 |
0.034693 |
146 -- 193 |
37 -- 81 |
rRNA maturation RNase YbeY |
|
_____________145__________________________________________194\n_____________|____________________________________________|\n5'-UCC...AAAAC____________UUG____________G_______GU_______AGGAG...CGC-3'\n______________GCAAA_GCGGCG___GCGGCA____GA_CGUAAGC__GAAGCCC\n______________|||||_:|::|:___:|::||____:|_|||||||__:||||||\n______________CGUUU_UGUUGU___UGUUGU____UU_GCAUUCG__UUUCGGG\n3'-UUU...GUUAA_____G______UG_______AGUG__G_______GU_______UAGUC...UCA-5'\n_____________|____________________________________________|\n_____________82___________________________________________36\n |
178 -- 184 |
48 -- 54 |
-38.2699 kcal/mol |
15.4401 kcal/mol |
16.4278 kcal/mol |
145 194@LB@ | |@LB@5'-UCC...AAAAC UUG G GU AGGAG...CGC-3'@LB@ GCAAA GCGGCG GCGGCA GA CGUAAGC GAAGCCC@LB@ ||||| :|::|: :|::|| :| ||||||| :||||||@LB@ CGUUU UGUUGU UGUUGU UU GCAUUCG UUUCGGG@LB@3'-UUU...GUUAA G UG AGUG G GU UAGUC...UCA-5'@LB@ | |@LB@ 82 36@LB@@LB@@LB@Energy -18.23 kcal/mol@LB@Hybridization Energy -38.2699 kcal/mol@LB@Unfolding Energy - mRNA 15.4401 kcal/mol@LB@Unfolding Energy - sRNA 16.4278 kcal/mol@LB@@LB@Position - mRNA 146 -- 193@LB@Position - sRNA 37 -- 81@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 48 -- 54@LB@ |
115 |
0.005604 |
0.1728 |
stm0982 |
himD |
-16.93 |
0.057154 |
154 -- 192 |
37 -- 75 |
integration host factor subunit beta |
|
______________154________193\n______________|__________|\n___________5'-___________GGCUG...UGG-3'\n______________AACAACGCAAU\n______________||||||:|||:\n______________UUGUUGUGUUG\n3'-UUU...UUGUG___________UAGUG...UCA-5'\n_____________|___________|\n_____________76__________36\n |
5 -- 11 |
72 -- 78 |
-12.1177 kcal/mol |
1.51678 kcal/mol |
3.07616 kcal/mol |
154 193@LB@ | |@LB@ 5'- GGCUG...UGG-3'@LB@ AACAACGCAAU@LB@ ||||||:|||:@LB@ UUGUUGUGUUG@LB@3'-UUU...UUGUG UAGUG...UCA-5'@LB@ | |@LB@ 76 36@LB@@LB@@LB@Energy -16.93 kcal/mol@LB@Hybridization Energy -12.1177 kcal/mol@LB@Unfolding Energy - mRNA 1.51678 kcal/mol@LB@Unfolding Energy - sRNA 3.07616 kcal/mol@LB@@LB@Position - mRNA 154 -- 192@LB@Position - sRNA 37 -- 75@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 72 -- 78@LB@ |
101 |
0.005112 |
0.1728 |
stm0113 |
leuA |
-13.72 |
0.187230 |
187 -- 230 |
37 -- 84 |
2-isopropylmalate synthase |
|
_____________186_____________________231\n_____________|_______________________|\n5'-AUA...UGGAG____G_____________G____AGCAA...UGG-3'\n______________ACAA_GAC_C_ACAUCAU_AGCC\n______________||||_:||_|_||||||:_|:||\n______________UGUU_UUG_G_UGUAGUG_UUGG\n3'-UUU...GUUUG____G___U_U____________CAUUC...UCA-5'\n_____________|_______________________|\n_____________85______________________36\n |
196 -- 202 |
67 -- 73 |
-19.8594 kcal/mol |
2.76514 kcal/mol |
8.15907 kcal/mol |
186 231@LB@ | |@LB@5'-AUA...UGGAG G G AGCAA...UGG-3'@LB@ ACAA GAC C ACAUCAU AGCC@LB@ |||| :|| | ||||||: |:||@LB@ UGUU UUG G UGUAGUG UUGG@LB@3'-UUU...GUUUG G U U CAUUC...UCA-5'@LB@ | |@LB@ 85 36@LB@@LB@@LB@Energy -13.72 kcal/mol@LB@Hybridization Energy -19.8594 kcal/mol@LB@Unfolding Energy - mRNA 2.76514 kcal/mol@LB@Unfolding Energy - sRNA 8.15907 kcal/mol@LB@@LB@Position - mRNA 187 -- 230@LB@Position - sRNA 37 -- 84@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 67 -- 73@LB@ |
109 |
0.005328 |
0.1728 |
stm3082 |
N/A |
-12.60 |
0.275269 |
106 -- 154 |
38 -- 90 |
galactonate oxidoreductase |
|
_____________105________________________155\n_____________|__________________________|\n5'-AAU...ACAAC______UUUUUA_______UU_____GGCCU...CGG-3'\n______________GCAGAC______AACAACA__CAGCA\n______________|||:||______|||||||__||:||\n______________CGUUUG______UUGUUGU__GUUGU\n3'-UUU...GUUAA______UG__________________AGUGU...UCA-5'\n_____________|__________________________|\n_____________91_________________________37\n |
118 -- 124 |
76 -- 82 |
-16.9817 kcal/mol |
2.50135 kcal/mol |
3.80671 kcal/mol |
105 155@LB@ | |@LB@5'-AAU...ACAAC UUUUUA UU GGCCU...CGG-3'@LB@ GCAGAC AACAACA CAGCA@LB@ |||:|| ||||||| ||:||@LB@ CGUUUG UUGUUGU GUUGU@LB@3'-UUU...GUUAA UG AGUGU...UCA-5'@LB@ | |@LB@ 91 37@LB@@LB@@LB@Energy -12.60 kcal/mol@LB@Hybridization Energy -16.9817 kcal/mol@LB@Unfolding Energy - mRNA 2.50135 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 106 -- 154@LB@Position - sRNA 38 -- 90@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 76 -- 82@LB@ |
112 |
0.005549 |
0.1728 |
stm0602 |
ybdH |
-14.01 |
0.169356 |
159 -- 193 |
39 -- 79 |
oxidoreductase |
|
_____________158_____________194\n_____________|_______________|\n5'-GCG...CCCUA_G_____________GAACC...AGC-3'\n______________A_GACAACACAACAU\n______________|_:||||||||||||\n______________U_UUGUUGUGUUGUA\n3'-UUU...GUUUG_G_____________GUGUU...UCA-5'\n_____________|_______________|\n_____________80______________38\n |
196 -- 202 |
70 -- 76 |
-18.8338 kcal/mol |
1.20586 kcal/mol |
3.77892 kcal/mol |
158 194@LB@ | |@LB@5'-GCG...CCCUA G GAACC...AGC-3'@LB@ A GACAACACAACAU@LB@ | :||||||||||||@LB@ U UUGUUGUGUUGUA@LB@3'-UUU...GUUUG G GUGUU...UCA-5'@LB@ | |@LB@ 80 38@LB@@LB@@LB@Energy -14.01 kcal/mol@LB@Hybridization Energy -18.8338 kcal/mol@LB@Unfolding Energy - mRNA 1.20586 kcal/mol@LB@Unfolding Energy - sRNA 3.77892 kcal/mol@LB@@LB@Position - mRNA 159 -- 193@LB@Position - sRNA 39 -- 79@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 70 -- 76@LB@ |
105 |
0.005236 |
0.1728 |
stm4566 |
yjjI |
-12.28 |
0.305832 |
96 -- 137 |
40 -- 77 |
YjjI family glycine radical enzyme |
|
_____________95________________138\n_____________|_________________|\n5'-ACA...UUUUC____________U____CCGGC...UGG-3'\n______________UACAAUAGCGCA_CGUC\n______________:||||:|:|:||_|:||\n______________GUGUUGUUGUGU_GUAG\n3'-UUU...CGUUU____________U____UGUUG...UCA-5'\n_____________|_________________|\n_____________78________________39\n |
167 -- 173 |
74 -- 80 |
-18.3997 kcal/mol |
3.44142 kcal/mol |
3.92987 kcal/mol |
95 138@LB@ | |@LB@5'-ACA...UUUUC U CCGGC...UGG-3'@LB@ UACAAUAGCGCA CGUC@LB@ :||||:|:|:|| |:||@LB@ GUGUUGUUGUGU GUAG@LB@3'-UUU...CGUUU U UGUUG...UCA-5'@LB@ | |@LB@ 78 39@LB@@LB@@LB@Energy -12.28 kcal/mol@LB@Hybridization Energy -18.3997 kcal/mol@LB@Unfolding Energy - mRNA 3.44142 kcal/mol@LB@Unfolding Energy - sRNA 3.92987 kcal/mol@LB@@LB@Position - mRNA 96 -- 137@LB@Position - sRNA 40 -- 77@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 74 -- 80@LB@ |
100 |
0.00495 |
0.1728 |
stm1879 |
ptrB |
-19.83 |
0.018631 |
144 -- 223 |
40 -- 120 |
oligopeptidase B |
|
_____________143____________________________________________224\n_____________|______________________________________________|\n5'-AAG...UAUAA_________________AAGAAAAA_____A___U___________AAUCG...AGC-3'\n______________CAAAUAU__UAACGCAA________ACGAC_UGU__GCCAAAAGCC\n______________||||:|:__:|||:|||________||:||_:||__||||||||||\n______________GUUUGUG__GUUGUGUU________UGUUG_GCA__CGGUUUUCGG\n3'-UUU...UUAAC_______UU________GUAG_____________UU__________GUAGU...UCA-5'\n_____________|______________________________________________|\n_____________121____________________________________________39\n |
209 -- 215 |
49 -- 55 |
-34.4525 kcal/mol |
3.62291 kcal/mol |
15.2208 kcal/mol |
143 224@LB@ | |@LB@5'-AAG...UAUAA AAGAAAAA A U AAUCG...AGC-3'@LB@ CAAAUAU UAACGCAA ACGAC UGU GCCAAAAGCC@LB@ ||||:|: :|||:||| ||:|| :|| ||||||||||@LB@ GUUUGUG GUUGUGUU UGUUG GCA CGGUUUUCGG@LB@3'-UUU...UUAAC UU GUAG UU GUAGU...UCA-5'@LB@ | |@LB@ 121 39@LB@@LB@@LB@Energy -19.83 kcal/mol@LB@Hybridization Energy -34.4525 kcal/mol@LB@Unfolding Energy - mRNA 3.62291 kcal/mol@LB@Unfolding Energy - sRNA 15.2208 kcal/mol@LB@@LB@Position - mRNA 144 -- 223@LB@Position - sRNA 40 -- 120@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 49 -- 55@LB@ |
111 |
0.005436 |
0.1728 |
stm2683 |
yfjB |
-15.36 |
0.103307 |
255 -- 299 |
43 -- 90 |
NAD(+) kinase |
|
_____________254___________________________________________________________________300\n_____________|_____________________________________________________________________|\n5'-CUC...UUCGC__________GAU____UU______UUCAA__________ACUCACAUU_____AUCAAUCU_______AAGGA...AGG-3'\n______________UUAUUAUGGG___CAGA__CAGGGU________GGGAAGU___________GUC________UCGCUAC\n______________|:|:|||||:___||||__||||||________:||||||___________|||________|||||||\n______________AGUGAUACCU___GUCU__GUCCCA________UCCUUCA___________CAG________AGCGAUG\n3'-UUU...UAAUU_________________________UUUACAUG_______CUUUUUCCCAU__________________GCACC...UCA-5'\n_____________|_____________________________________________________________________|\n_____________91____________________________________________________________________42\n |
179 -- 185 |
115 -- 121 |
-40.6869 kcal/mol |
14.2494 kcal/mol |
12.858 kcal/mol |
254 300@LB@ | |@LB@5'-CUC...UUCGC GAU UU UUCAA ACUCACAUU AUCAAUCU AAGGA...AGG-3'@LB@ UUAUUAUGGG CAGA CAGGGU GGGAAGU GUC UCGCUAC@LB@ |:|:|||||: |||| |||||| :|||||| ||| |||||||@LB@ AGUGAUACCU GUCU GUCCCA UCCUUCA CAG AGCGAUG@LB@3'-UUU...UAAUU UUUACAUG CUUUUUCCCAU GCACC...UCA-5'@LB@ | |@LB@ 91 42@LB@@LB@@LB@Energy -15.36 kcal/mol@LB@Hybridization Energy -40.6869 kcal/mol@LB@Unfolding Energy - mRNA 14.2494 kcal/mol@LB@Unfolding Energy - sRNA 12.858 kcal/mol@LB@@LB@Position - mRNA 255 -- 299@LB@Position - sRNA 43 -- 90@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 115 -- 121@LB@ |
97 |
0.004849 |
0.1728 |
stm0832 |
ybiF |
-11.58 |
0.382043 |
25 -- 72 |
45 -- 91 |
threonine/homoserine exporter RhtA |
|
_____________24______________________73\n_____________|_______________________|\n5'-GGC...GCGCG_________________U_____CAGAU...CGU-3'\n______________UGC_GGCGCGAUA_CAU__CAUC\n______________|||_::|:|:|:|_||:__||||\n______________ACG_UUGUGUUGU_GUG__GUAG\n3'-UUU...GGUUA___U_________U___UU____UGUUG...UCA-5'\n_____________|_______________________|\n_____________92______________________44\n |
30 -- 36 |
79 -- 85 |
-16.3644 kcal/mol |
3.58897 kcal/mol |
4.34303 kcal/mol |
24 73@LB@ | |@LB@5'-GGC...GCGCG U CAGAU...CGU-3'@LB@ UGC GGCGCGAUA CAU CAUC@LB@ ||| ::|:|:|:| ||: ||||@LB@ ACG UUGUGUUGU GUG GUAG@LB@3'-UUU...GGUUA U U UU UGUUG...UCA-5'@LB@ | |@LB@ 92 44@LB@@LB@@LB@Energy -11.58 kcal/mol@LB@Hybridization Energy -16.3644 kcal/mol@LB@Unfolding Energy - mRNA 3.58897 kcal/mol@LB@Unfolding Energy - sRNA 4.34303 kcal/mol@LB@@LB@Position - mRNA 25 -- 72@LB@Position - sRNA 45 -- 91@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 79 -- 85@LB@ |
110 |
0.005337 |
0.1728 |
stm1920 |
cheW |
-12.58 |
0.277263 |
149 -- 192 |
51 -- 90 |
chemotaxis protein CheW |
|
_____________148__________193\n_____________|____________|\n5'-GUC...UGAUU____________AAUAA...UCC-3'\n______________GAGUGAGAAGGG\n______________:|||||:||:||\n______________UUCACUUUUUCC\n3'-UUU...UGUCC____________CAUCA...UCA-5'\n_____________|____________|\n_____________91___________50\n |
188 -- 194 |
128 -- 134 |
-15.4894 kcal/mol |
2.64754 kcal/mol |
3.77328 kcal/mol |
148 193@LB@ | |@LB@5'-GUC...UGAUU AAUAA...UCC-3'@LB@ GAGUGAGAAGGG@LB@ :|||||:||:||@LB@ UUCACUUUUUCC@LB@3'-UUU...UGUCC CAUCA...UCA-5'@LB@ | |@LB@ 91 50@LB@@LB@@LB@Energy -12.58 kcal/mol@LB@Hybridization Energy -15.4894 kcal/mol@LB@Unfolding Energy - mRNA 2.64754 kcal/mol@LB@Unfolding Energy - sRNA 3.77328 kcal/mol@LB@@LB@Position - mRNA 149 -- 192@LB@Position - sRNA 51 -- 90@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 128 -- 134@LB@ |