132 |
0.0144 |
0.3654 |
b2381 |
ypdB |
-7.98 |
0.293473 |
18 -- 39 |
11 -- 32 |
response regulator activating yhjX; pyruvate-responsive YpdAB two-component system |
|
_____________17_____________________40\n_____________|______________________|\n5'-AUU...GAAGC_________GCCG_________AUUGG...ACG-3'\n______________GAAUGAAAU____GGCAAUAAA\n______________:|||:||||____|:|||||||\n______________UUUAUUUUA____CUGUUAUUU\n3'-UUU...UGUCU_________GACA_________CCGUA...UUG-5'\n_____________|______________________|\n_____________33_____________________10\n |
33 -- 39 |
11 -- 17 |
-14.9693 kcal/mol |
2.07375 kcal/mol |
4.91579 kcal/mol |
17 40@LB@ | |@LB@5'-AUU...GAAGC GCCG AUUGG...ACG-3'@LB@ GAAUGAAAU GGCAAUAAA@LB@ :|||:|||| |:|||||||@LB@ UUUAUUUUA CUGUUAUUU@LB@3'-UUU...UGUCU GACA CCGUA...UUG-5'@LB@ | |@LB@ 33 10@LB@@LB@@LB@Energy -7.98 kcal/mol@LB@Hybridization Energy -14.9693 kcal/mol@LB@Unfolding Energy - mRNA 2.07375 kcal/mol@LB@Unfolding Energy - sRNA 4.91579 kcal/mol@LB@@LB@Position - mRNA 18 -- 39@LB@Position - sRNA 11 -- 32@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 11 -- 17@LB@ |
150 |
0.01784 |
0.3828 |
b2412 |
zipA |
-13.80 |
0.016156 |
169 -- 198 |
28 -- 57 |
FtsZ stabilizer |
|
_____________168____________________________199\n_____________|______________________________|\n5'-CAG...GCCGU________G___UUA_AA____________UAAUG...CUU-3'\n______________GGUGGCAA_GUG___G__CAACAGAGAAUA\n______________:|||||||_|::___|__|||||||:||||\n______________UCACCGUU_CGU___C__GUUGUCUUUUAU\n3'-UUU...UUUAG________A___UAC_GG____________UUUAG...UUG-5'\n_____________|______________________________|\n_____________58_____________________________27\n |
189 -- 195 |
31 -- 37 |
-29.7049 kcal/mol |
6.01867 kcal/mol |
9.88595 kcal/mol |
168 199@LB@ | |@LB@5'-CAG...GCCGU G UUA AA UAAUG...CUU-3'@LB@ GGUGGCAA GUG G CAACAGAGAAUA@LB@ :||||||| |:: | |||||||:||||@LB@ UCACCGUU CGU C GUUGUCUUUUAU@LB@3'-UUU...UUUAG A UAC GG UUUAG...UUG-5'@LB@ | |@LB@ 58 27@LB@@LB@@LB@Energy -13.80 kcal/mol@LB@Hybridization Energy -29.7049 kcal/mol@LB@Unfolding Energy - mRNA 6.01867 kcal/mol@LB@Unfolding Energy - sRNA 9.88595 kcal/mol@LB@@LB@Position - mRNA 169 -- 198@LB@Position - sRNA 28 -- 57@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 31 -- 37@LB@ |
159 |
0.01815 |
0.3828 |
b2418 |
pdxK |
-7.58 |
0.341503 |
51 -- 77 |
38 -- 65 |
pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase |
|
_____________50___________________________78\n_____________|____________________________|\n5'-CAU...AACGG____U____UUA___________A____GACAA...GCA-3'\n______________GGAG_GUCA___GUAGUGUAAUG__CCA\n______________|||:_:|||___|:|:||:||||__|||\n______________CCUU_UAGU___CGUUACGUUAC__GGU\n3'-UUU...UACAA____U____CAC___________CG___UGUCU...UUG-5'\n_____________|____________________________|\n_____________66___________________________37\n |
67 -- 73 |
43 -- 49 |
-23.6415 kcal/mol |
9.38399 kcal/mol |
6.67322 kcal/mol |
50 78@LB@ | |@LB@5'-CAU...AACGG U UUA A GACAA...GCA-3'@LB@ GGAG GUCA GUAGUGUAAUG CCA@LB@ |||: :||| |:|:||:|||| |||@LB@ CCUU UAGU CGUUACGUUAC GGU@LB@3'-UUU...UACAA U CAC CG UGUCU...UUG-5'@LB@ | |@LB@ 66 37@LB@@LB@@LB@Energy -7.58 kcal/mol@LB@Hybridization Energy -23.6415 kcal/mol@LB@Unfolding Energy - mRNA 9.38399 kcal/mol@LB@Unfolding Energy - sRNA 6.67322 kcal/mol@LB@@LB@Position - mRNA 51 -- 77@LB@Position - sRNA 38 -- 65@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 43 -- 49@LB@ |
108 |
0.01004 |
0.3126 |
b2422 |
cysA |
-10.23 |
0.108830 |
144 -- 158 |
52 -- 72 |
sulfate/thiosulfate transporter subunit |
|
_____________143___________________159\n_____________|_____________________|\n5'-GGU...AAAAA_____________________GCCUG...UGC-3'\n______________GUAUGUUG______CAGUGGC\n______________:|||||||______|||||||\n______________UAUACAAC______GUCACCG\n3'-UUU...AAAAA________CUUUUA_______UUACG...UUG-5'\n_____________|_____________________|\n_____________73____________________51\n |
152 -- 158 |
52 -- 58 |
-18.4697 kcal/mol |
5.08596 kcal/mol |
3.1495 kcal/mol |
143 159@LB@ | |@LB@5'-GGU...AAAAA GCCUG...UGC-3'@LB@ GUAUGUUG CAGUGGC@LB@ :||||||| |||||||@LB@ UAUACAAC GUCACCG@LB@3'-UUU...AAAAA CUUUUA UUACG...UUG-5'@LB@ | |@LB@ 73 51@LB@@LB@@LB@Energy -10.23 kcal/mol@LB@Hybridization Energy -18.4697 kcal/mol@LB@Unfolding Energy - mRNA 5.08596 kcal/mol@LB@Unfolding Energy - sRNA 3.1495 kcal/mol@LB@@LB@Position - mRNA 144 -- 158@LB@Position - sRNA 52 -- 72@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 52 -- 58@LB@ |
73 |
0.006265 |
0.2822 |
b2452 |
eutH |
-10.44 |
0.098342 |
69 -- 89 |
40 -- 58 |
ethanolamine transporter |
|
_____________68____________________90\n_____________|_____________________|\n5'-UUG...UCCGC________CG_______U___GGAUG...UCC-3'\n______________CAGUGGCG__GUGCAAU_GCC\n______________|||||||:__:||||||_|||\n______________GUCACCGU__UACGUUA_CGG\n3'-UUU...UUUUA_________________C___GUUGU...UUG-5'\n_____________|_____________________|\n_____________59____________________39\n |
79 -- 85 |
44 -- 50 |
-25.8936 kcal/mol |
9.38235 kcal/mol |
6.06808 kcal/mol |
68 90@LB@ | |@LB@5'-UUG...UCCGC CG U GGAUG...UCC-3'@LB@ CAGUGGCG GUGCAAU GCC@LB@ |||||||: :|||||| |||@LB@ GUCACCGU UACGUUA CGG@LB@3'-UUU...UUUUA C GUUGU...UUG-5'@LB@ | |@LB@ 59 39@LB@@LB@@LB@Energy -10.44 kcal/mol@LB@Hybridization Energy -25.8936 kcal/mol@LB@Unfolding Energy - mRNA 9.38235 kcal/mol@LB@Unfolding Energy - sRNA 6.06808 kcal/mol@LB@@LB@Position - mRNA 69 -- 89@LB@Position - sRNA 40 -- 58@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 44 -- 50@LB@ |
192 |
0.02397 |
0.4199 |
b2465 |
tktB |
-14.96 |
0.008038 |
72 -- 123 |
6 -- 68 |
transketolase 2 thiamine triphosphate-binding |
|
_____________71__________________________________________________________________124\n_____________|___________________________________________________________________|\n5'-AGU...GUUCC_______GCAC_____________________GG_________ACU_____________________UCGUC...CUG-3'\n______________GUUGGGA____AAUCAG____GAUGCGAUGGC____UAGAAAA____GUCUG________AAGGCAU\n______________|||||:|____||||||____:||||:|||||____:||||||____:||||________|||||||\n______________CAACCUU____UUAGUC____UUACGUUACCG____GUCUUUU____UAGAC________UUCCGUA\n3'-UUU...AUAUA_________________ACCG___________GGUU_______AUUU_____ACUGUUAU_______UAUUG-5'\n_____________|___________________________________________________________________|\n_____________69__________________________________________________________________5\n |
117 -- 123 |
6 -- 12 |
-46.2591 kcal/mol |
19.141 kcal/mol |
12.1601 kcal/mol |
71 124@LB@ | |@LB@5'-AGU...GUUCC GCAC GG ACU UCGUC...CUG-3'@LB@ GUUGGGA AAUCAG GAUGCGAUGGC UAGAAAA GUCUG AAGGCAU@LB@ |||||:| |||||| :||||:||||| :|||||| :|||| |||||||@LB@ CAACCUU UUAGUC UUACGUUACCG GUCUUUU UAGAC UUCCGUA@LB@3'-UUU...AUAUA ACCG GGUU AUUU ACUGUUAU UAUUG-5'@LB@ | |@LB@ 69 5@LB@@LB@@LB@Energy -14.96 kcal/mol@LB@Hybridization Energy -46.2591 kcal/mol@LB@Unfolding Energy - mRNA 19.141 kcal/mol@LB@Unfolding Energy - sRNA 12.1601 kcal/mol@LB@@LB@Position - mRNA 72 -- 123@LB@Position - sRNA 6 -- 68@LB@Position Seed - mRNA 117 -- 123@LB@Position Seed - sRNA 6 -- 12@LB@ |
41 |
0.002667 |
0.2088 |
b2475 |
ypfJ |
-12.17 |
0.040379 |
232 -- 266 |
38 -- 70 |
putative neutral zinc metallopeptidase |
|
_____________231___________________________________267\n_____________|_____________________________________|\n5'-GUC...UGACA_______________GC____CA__UCU_________UCUAU...GCG-3'\n______________AUGUU_GAAGA_CAG__GCAA__GC___GGUGGUCCA\n______________|||||_|||:|_|||__||||__||___::|||:|||\n______________UACAA_CUUUU_GUC__CGUU__CG___UUACCGGGU\n3'-UUU...AAAUA_____C_____A___AC____A_______________UGUCU...UUG-5'\n_____________|_____________________________________|\n_____________71____________________________________37\n |
260 -- 266 |
38 -- 44 |
-27.4905 kcal/mol |
8.02084 kcal/mol |
7.29667 kcal/mol |
231 267@LB@ | |@LB@5'-GUC...UGACA GC CA UCU UCUAU...GCG-3'@LB@ AUGUU GAAGA CAG GCAA GC GGUGGUCCA@LB@ ||||| |||:| ||| |||| || ::|||:|||@LB@ UACAA CUUUU GUC CGUU CG UUACCGGGU@LB@3'-UUU...AAAUA C A AC A UGUCU...UUG-5'@LB@ | |@LB@ 71 37@LB@@LB@@LB@Energy -12.17 kcal/mol@LB@Hybridization Energy -27.4905 kcal/mol@LB@Unfolding Energy - mRNA 8.02084 kcal/mol@LB@Unfolding Energy - sRNA 7.29667 kcal/mol@LB@@LB@Position - mRNA 232 -- 266@LB@Position - sRNA 38 -- 70@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 38 -- 44@LB@ |
188 |
0.02326 |
0.4145 |
b2501 |
ppk |
-10.84 |
0.080977 |
186 -- 203 |
48 -- 65 |
polyphosphate kinase component of RNA degradosome |
|
_____________185________________204\n_____________|__________________|\n5'-CGC...AAAAC____UAAA__________GGUCA...UUG-3'\n______________GGAG____AGUGGUAAUG\n______________|||:____|||||:||||\n______________CCUU____UCACCGUUAC\n3'-UUU...UACAA____UUAG__________GUUAC...UUG-5'\n_____________|__________________|\n_____________66_________________47\n |
197 -- 203 |
48 -- 54 |
-18.775 kcal/mol |
3.93073 kcal/mol |
4.00814 kcal/mol |
185 204@LB@ | |@LB@5'-CGC...AAAAC UAAA GGUCA...UUG-3'@LB@ GGAG AGUGGUAAUG@LB@ |||: |||||:||||@LB@ CCUU UCACCGUUAC@LB@3'-UUU...UACAA UUAG GUUAC...UUG-5'@LB@ | |@LB@ 66 47@LB@@LB@@LB@Energy -10.84 kcal/mol@LB@Hybridization Energy -18.775 kcal/mol@LB@Unfolding Energy - mRNA 3.93073 kcal/mol@LB@Unfolding Energy - sRNA 4.00814 kcal/mol@LB@@LB@Position - mRNA 186 -- 203@LB@Position - sRNA 48 -- 65@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 48 -- 54@LB@ |
17 |
0.0007572 |
0.1438 |
b2512 |
bamB |
-10.25 |
0.108120 |
60 -- 97 |
8 -- 56 |
BamABCDE complex OM biogenesis lipoprotein |
|
_____________59________________________________________________98\n_____________|_________________________________________________|\n5'-GCU...CCUGC_______A___U_____G____AAG_________________GC_____GCGCG...CCC-3'\n______________GUGGUGA_GCA_U_GCU_AGCA_____________GUGAUAA__AAGGU\n______________||||::|_|||_|_||:_|:||_____________||||:||__||||:\n______________CACCGUU_CGU_A_CGG_UUGU_____________CACUGUU__UUCCG\n3'-UUU...UUAGU_______A___U_C___G____CUUUUAUUUUAGA_______AU_____UAUAUUG-5'\n_____________|_________________________________________________|\n_____________57________________________________________________7\n |
84 -- 90 |
15 -- 21 |
-31.6141 kcal/mol |
9.34469 kcal/mol |
12.0216 kcal/mol |
59 98@LB@ | |@LB@5'-GCU...CCUGC A U G AAG GC GCGCG...CCC-3'@LB@ GUGGUGA GCA U GCU AGCA GUGAUAA AAGGU@LB@ ||||::| ||| | ||: |:|| ||||:|| ||||:@LB@ CACCGUU CGU A CGG UUGU CACUGUU UUCCG@LB@3'-UUU...UUAGU A U C G CUUUUAUUUUAGA AU UAUAUUG-5'@LB@ | |@LB@ 57 7@LB@@LB@@LB@Energy -10.25 kcal/mol@LB@Hybridization Energy -31.6141 kcal/mol@LB@Unfolding Energy - mRNA 9.34469 kcal/mol@LB@Unfolding Energy - sRNA 12.0216 kcal/mol@LB@@LB@Position - mRNA 60 -- 97@LB@Position - sRNA 8 -- 56@LB@Position Seed - mRNA 84 -- 90@LB@Position Seed - sRNA 15 -- 21@LB@ |
92 |
0.007983 |
0.2918 |
b2513 |
yfgM |
-8.87 |
0.203113 |
70 -- 109 |
9 -- 65 |
ancillary SecYEG translocon subunit; putative anti-RcsB factor |
|
_____________69___________________________________________________________110\n_____________|____________________________________________________________|\n5'-GGC...UGCUG__U_____UGA_____________C___A_______________________________AUUUG...UUG-3'\n______________GG_GAGUC___AGUGGC____UAA_GGC_CAGCAG________________UAGUGAAGG\n______________||_:|:||___||||||____:||_|||_||:|||________________:|:|:||||\n______________CC_UUUAG___UCACCG____GUU_CCG_GUUGUC________________GUUAUUUCC\n3'-UUU...UACAA__U______________UUAC___A___G______UUUUAUUUUAGACACU_________GUAUAUUG-5'\n_____________|____________________________________________________________|\n_____________66___________________________________________________________8\n |
103 -- 109 |
9 -- 15 |
-31.9345 kcal/mol |
11.9273 kcal/mol |
11.1365 kcal/mol |
69 110@LB@ | |@LB@5'-GGC...UGCUG U UGA C A AUUUG...UUG-3'@LB@ GG GAGUC AGUGGC UAA GGC CAGCAG UAGUGAAGG@LB@ || :|:|| |||||| :|| ||| ||:||| :|:|:||||@LB@ CC UUUAG UCACCG GUU CCG GUUGUC GUUAUUUCC@LB@3'-UUU...UACAA U UUAC A G UUUUAUUUUAGACACU GUAUAUUG-5'@LB@ | |@LB@ 66 8@LB@@LB@@LB@Energy -8.87 kcal/mol@LB@Hybridization Energy -31.9345 kcal/mol@LB@Unfolding Energy - mRNA 11.9273 kcal/mol@LB@Unfolding Energy - sRNA 11.1365 kcal/mol@LB@@LB@Position - mRNA 70 -- 109@LB@Position - sRNA 9 -- 65@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 9 -- 15@LB@ |