194 |
0.01081 |
0.197 |
stm1954 |
fliY |
-13.82 |
0.181182 |
183 -- 228 |
153 -- 193 |
cystine ABC transporter substrate-binding protein |
|
_____________182________________________229\n_____________|__________________________|\n5'-CAG...GUCUA_________AC____AUAUU______UACUA...UGC-3'\n______________UGGUCAUUA__GGCA_____CGGGGU\n______________|::|||:||__|:||_____|:||||\n______________AUUAGUGAU__CUGU_____GUCCCA\n3'-UUU...AUGUA_________AC____CU_________UUUAC...UCA-5'\n_____________|__________________________|\n_____________194________________________152\n |
173 -- 179 |
165 -- 171 |
-18.5851 kcal/mol |
4.12345 kcal/mol |
4.10259 kcal/mol |
182 229@LB@ | |@LB@5'-CAG...GUCUA AC AUAUU UACUA...UGC-3'@LB@ UGGUCAUUA GGCA CGGGGU@LB@ |::|||:|| |:|| |:||||@LB@ AUUAGUGAU CUGU GUCCCA@LB@3'-UUU...AUGUA AC CU UUUAC...UCA-5'@LB@ | |@LB@ 194 152@LB@@LB@@LB@Energy -13.82 kcal/mol@LB@Hybridization Energy -18.5851 kcal/mol@LB@Unfolding Energy - mRNA 4.12345 kcal/mol@LB@Unfolding Energy - sRNA 4.10259 kcal/mol@LB@@LB@Position - mRNA 183 -- 228@LB@Position - sRNA 153 -- 193@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 165 -- 171@LB@ |
174 |
0.009594 |
0.1945 |
stm1955 |
fliZ |
-12.61 |
0.274939 |
261 -- 282 |
33 -- 59 |
flagellar regulatory protein FliZ |
|
_____________260________________283\n_____________|__________________|\n5'-GCA...GACUU__________CA______UUGCG...ACC-3'\n______________UAAACACAGC__GACGCA\n______________:|||||||:|__:||:||\n______________GUUUGUGUUG__UUGUGU\n3'-UUU...UUAAC__________________UGUAG...UCA-5'\n_____________|__________________|\n_____________60_________________32\n |
257 -- 263 |
80 -- 86 |
-16.495 kcal/mol |
1.82497 kcal/mol |
3.72065 kcal/mol |
260 283@LB@ | |@LB@5'-GCA...GACUU CA UUGCG...ACC-3'@LB@ UAAACACAGC GACGCA@LB@ :|||||||:| :||:||@LB@ GUUUGUGUUG UUGUGU@LB@3'-UUU...UUAAC UGUAG...UCA-5'@LB@ | |@LB@ 60 32@LB@@LB@@LB@Energy -12.61 kcal/mol@LB@Hybridization Energy -16.495 kcal/mol@LB@Unfolding Energy - mRNA 1.82497 kcal/mol@LB@Unfolding Energy - sRNA 3.72065 kcal/mol@LB@@LB@Position - mRNA 261 -- 282@LB@Position - sRNA 33 -- 59@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 80 -- 86@LB@ |
86 |
0.004005 |
0.1596 |
stm1961 |
fliS |
-19.11 |
0.024619 |
1 -- 77 |
23 -- 90 |
flagellar export chaperone FliS |
|
______________1__________________________________________________________________________________78\n______________|__________________________________________________________________________________|\n___________5'-_______G_______UU____C________AA_____UGACAAAACAGUACCU_________C____________________CGUUG...AUG-3'\n______________GC__GCA_GACAACG__AACG_CAC_GCUG__AAGCC________________GUCCGUUAG_AACA_GCAU__CGAUGAAAC\n______________||__:||_:|||||:__|||:_|||_:|:|__|||||________________|:||:|:||_||||_||||__||||:||||\n______________CG__UGU_UUGUUGU__UUGU_GUG_UGGC__UUCGG________________CGGGUAGUC_UUGU_CGUA__GCUAUUUUG\n3'-UUU...GUUAA__UU___G_______G_____A___U____A______UUUU__________________________G____AG_________AAAAG...UCA-5'\n_____________|___________________________________________________________________________________|\n_____________91__________________________________________________________________________________22\n |
7 -- 13 |
76 -- 82 |
-54.7378 kcal/mol |
16.9215 kcal/mol |
25.0607 kcal/mol |
1 78@LB@ | |@LB@ 5'- G UU C AA UGACAAAACAGUACCU C CGUUG...AUG-3'@LB@ GC GCA GACAACG AACG CAC GCUG AAGCC GUCCGUUAG AACA GCAU CGAUGAAAC@LB@ || :|| :|||||: |||: ||| :|:| ||||| |:||:|:|| |||| |||| ||||:||||@LB@ CG UGU UUGUUGU UUGU GUG UGGC UUCGG CGGGUAGUC UUGU CGUA GCUAUUUUG@LB@3'-UUU...GUUAA UU G G A U A UUUU G AG AAAAG...UCA-5'@LB@ | |@LB@ 91 22@LB@@LB@@LB@Energy -19.11 kcal/mol@LB@Hybridization Energy -54.7378 kcal/mol@LB@Unfolding Energy - mRNA 16.9215 kcal/mol@LB@Unfolding Energy - sRNA 25.0607 kcal/mol@LB@@LB@Position - mRNA 1 -- 77@LB@Position - sRNA 23 -- 90@LB@Position Seed - mRNA 7 -- 13@LB@Position Seed - sRNA 76 -- 82@LB@ |
22 |
0.0005859 |
0.08814 |
stm1976 |
fliM |
-14.91 |
0.122150 |
23 -- 60 |
38 -- 69 |
flagellar motor switch protein FliM |
|
_____________22_____________________________________61\n_____________|______________________________________|\n5'-AAA...AAGUG_________CU____UUGUUGUUUU_____________CGCCG...GCG-3'\n______________CGCAGCCGU__GCUG__________CCCGUCAGAAUGC\n______________|:||:||||__||::__________|||:||||||::|\n______________GUGUUGGCA__CGGU__________GGGUAGUCUUGUG\n3'-UUU...UUGUA_________UU____UUUC___________________CGUAA...UCA-5'\n_____________|______________________________________|\n_____________70_____________________________________37\n |
49 -- 55 |
43 -- 49 |
-35.5971 kcal/mol |
10.3893 kcal/mol |
19.1758 kcal/mol |
22 61@LB@ | |@LB@5'-AAA...AAGUG CU UUGUUGUUUU CGCCG...GCG-3'@LB@ CGCAGCCGU GCUG CCCGUCAGAAUGC@LB@ |:||:|||| ||:: |||:||||||::|@LB@ GUGUUGGCA CGGU GGGUAGUCUUGUG@LB@3'-UUU...UUGUA UU UUUC CGUAA...UCA-5'@LB@ | |@LB@ 70 37@LB@@LB@@LB@Energy -14.91 kcal/mol@LB@Hybridization Energy -35.5971 kcal/mol@LB@Unfolding Energy - mRNA 10.3893 kcal/mol@LB@Unfolding Energy - sRNA 19.1758 kcal/mol@LB@@LB@Position - mRNA 23 -- 60@LB@Position - sRNA 38 -- 69@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 43 -- 49@LB@ |
119 |
0.005831 |
0.1745 |
stm1998 |
umuD |
-19.31 |
0.022806 |
33 -- 72 |
46 -- 81 |
DNA polymerase V subunit UmuD |
|
_____________32___________________73\n_____________|____________________|\n5'-AGA...AAAUA____C_______________CGGAA...ACA-3'\n______________UGCG_ACAUGACAAUACAAC\n______________|||:_|||::||||:|||||\n______________ACGU_UGUGUUGUUGUGUUG\n3'-UUU...GGUUA____U_______________UAGUG...UCA-5'\n_____________|____________________|\n_____________82___________________45\n |
45 -- 51 |
72 -- 78 |
-23.5929 kcal/mol |
1.21213 kcal/mol |
3.80548 kcal/mol |
32 73@LB@ | |@LB@5'-AGA...AAAUA C CGGAA...ACA-3'@LB@ UGCG ACAUGACAAUACAAC@LB@ |||: |||::||||:|||||@LB@ ACGU UGUGUUGUUGUGUUG@LB@3'-UUU...GGUUA U UAGUG...UCA-5'@LB@ | |@LB@ 82 45@LB@@LB@@LB@Energy -19.31 kcal/mol@LB@Hybridization Energy -23.5929 kcal/mol@LB@Unfolding Energy - mRNA 1.21213 kcal/mol@LB@Unfolding Energy - sRNA 3.80548 kcal/mol@LB@@LB@Position - mRNA 33 -- 72@LB@Position - sRNA 46 -- 81@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 72 -- 78@LB@ |
84 |
0.003893 |
0.1596 |
stm2015 |
erfK |
-27.15 |
0.001054 |
109 -- 172 |
35 -- 90 |
L D-transpeptidase |
|
_____________108____________________________________________________173\n_____________|______________________________________________________|\n5'-GAA...GGAAC____________UAACCCGGGC________________AU_____AA_______AUACU...UGG-3'\n______________GCAAACGCAACA__________GCACAACA_C_CAGCC__GUGAG__AAAAGCU\n______________||||||:|||||__________:|||||||_|_||:||__||:||__||||||:\n______________CGUUUGUGUUGU__________UGUGUUGU_G_GUUGG__CAUUC__UUUUCGG\n3'-UUU...GUUAA______________________________A_U____________GG_______GUAGU...UCA-5'\n_____________|______________________________________________________|\n_____________91_____________________________________________________34\n |
154 -- 160 |
49 -- 55 |
-46.562 kcal/mol |
9.44521 kcal/mol |
15.2217 kcal/mol |
108 173@LB@ | |@LB@5'-GAA...GGAAC UAACCCGGGC AU AA AUACU...UGG-3'@LB@ GCAAACGCAACA GCACAACA C CAGCC GUGAG AAAAGCU@LB@ ||||||:||||| :||||||| | ||:|| ||:|| ||||||:@LB@ CGUUUGUGUUGU UGUGUUGU G GUUGG CAUUC UUUUCGG@LB@3'-UUU...GUUAA A U GG GUAGU...UCA-5'@LB@ | |@LB@ 91 34@LB@@LB@@LB@Energy -27.15 kcal/mol@LB@Hybridization Energy -46.562 kcal/mol@LB@Unfolding Energy - mRNA 9.44521 kcal/mol@LB@Unfolding Energy - sRNA 15.2217 kcal/mol@LB@@LB@Position - mRNA 109 -- 172@LB@Position - sRNA 35 -- 90@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 49 -- 55@LB@ |
87 |
0.004009 |
0.1596 |
stm2067 |
sbcB |
-11.70 |
0.367652 |
220 -- 292 |
35 -- 90 |
exodeoxyribonuclease I |
|
_____________219_____________________293\n_____________|_______________________|\n5'-AUU...AUGUA______U________________AUUGG...CCG-3'\n______________CGAACA_UAGCA__ACAAUAUCA\n______________|:||||_:|:||__||||:||||\n______________GUUUGU_GUUGU__UGUUGUAGU\n3'-UUU...UUAAC____________UG_________GUUGG...UCA-5'\n_____________|_______________________|\n_____________91______________________34\n |
110 -- 116 |
68 -- 74 |
-17.8808 kcal/mol |
2.08887 kcal/mol |
5.27986 kcal/mol |
219 293@LB@ | |@LB@5'-AUU...AUGUA U AUUGG...CCG-3'@LB@ CGAACA UAGCA ACAAUAUCA@LB@ |:|||| :|:|| ||||:||||@LB@ GUUUGU GUUGU UGUUGUAGU@LB@3'-UUU...UUAAC UG GUUGG...UCA-5'@LB@ | |@LB@ 91 34@LB@@LB@@LB@Energy -11.70 kcal/mol@LB@Hybridization Energy -17.8808 kcal/mol@LB@Unfolding Energy - mRNA 2.08887 kcal/mol@LB@Unfolding Energy - sRNA 5.27986 kcal/mol@LB@@LB@Position - mRNA 220 -- 292@LB@Position - sRNA 35 -- 90@LB@Position Seed - mRNA 110 -- 116@LB@Position Seed - sRNA 68 -- 74@LB@ |
149 |
0.007892 |
0.1845 |
stm2071 |
hisG |
-15.61 |
0.094042 |
166 -- 245 |
36 -- 100 |
ATP phosphoribosyltransferase |
|
_____________165________________________246\n_____________|__________________________|\n5'-UUU...AGACC__UU________A________G____ACGCA...AUU-3'\n______________GG__CAGACAGG_UAA____A_AGGA\n______________||__||||||||_|||____|_||||\n______________CC__GUCUGUCC_AUU____U_UCCU\n3'-UUU...UGAUA__U_________C___UACA_G____UCACU...UCA-5'\n_____________|__________________________|\n_____________101________________________35\n |
177 -- 183 |
153 -- 159 |
-19.7047 kcal/mol |
3.01127 kcal/mol |
3.70983 kcal/mol |
165 246@LB@ | |@LB@5'-UUU...AGACC UU A G ACGCA...AUU-3'@LB@ GG CAGACAGG UAA A AGGA@LB@ || |||||||| ||| | ||||@LB@ CC GUCUGUCC AUU U UCCU@LB@3'-UUU...UGAUA U C UACA G UCACU...UCA-5'@LB@ | |@LB@ 101 35@LB@@LB@@LB@Energy -15.61 kcal/mol@LB@Hybridization Energy -19.7047 kcal/mol@LB@Unfolding Energy - mRNA 3.01127 kcal/mol@LB@Unfolding Energy - sRNA 3.70983 kcal/mol@LB@@LB@Position - mRNA 166 -- 245@LB@Position - sRNA 36 -- 100@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 153 -- 159@LB@ |
108 |
0.005311 |
0.1728 |
stm2183 |
cdd |
-16.35 |
0.071230 |
31 -- 68 |
151 -- 187 |
cytidine deaminase |
|
_____________30_________________69\n_____________|__________________|\n5'-UGG...AGAUC_____UUAA_________GGCCC...UGA-3'\n______________ACAUA____GACAUAGCA\n______________|||:|____:|||:|:||\n______________UGUGU____UUGUGUUGU\n3'-UUU...ACGUU_____UG___________AGUGU...UCA-5'\n_____________|__________________|\n_____________188________________150\n |
150 -- 156 |
71 -- 77 |
-12.389 kcal/mol |
1.12571 kcal/mol |
3.50787 kcal/mol |
30 69@LB@ | |@LB@5'-UGG...AGAUC UUAA GGCCC...UGA-3'@LB@ ACAUA GACAUAGCA@LB@ |||:| :|||:|:||@LB@ UGUGU UUGUGUUGU@LB@3'-UUU...ACGUU UG AGUGU...UCA-5'@LB@ | |@LB@ 188 150@LB@@LB@@LB@Energy -16.35 kcal/mol@LB@Hybridization Energy -12.389 kcal/mol@LB@Unfolding Energy - mRNA 1.12571 kcal/mol@LB@Unfolding Energy - sRNA 3.50787 kcal/mol@LB@@LB@Position - mRNA 31 -- 68@LB@Position - sRNA 151 -- 187@LB@Position Seed - mRNA 150 -- 156@LB@Position Seed - sRNA 71 -- 77@LB@ |
181 |
0.01001 |
0.1966 |
stm2266 |
apbE |
-12.19 |
0.314808 |
267 -- 297 |
62 -- 90 |
FAD:protein FMN transferase ApbE |
|
_____________266_____________________________298\n_____________|_______________________________|\n5'-ACC...AUGAG__UCCCGA______A__________CU____CUC-3'\n______________GC______AACGAC_ACAGCGUCAC__GCCG\n______________||______|||:||_|||:|:||||__:|||\n______________CG______UUGUUG_UGUUGUAGUG__UGGC\n3'-UUU...GUUAA__UUUGUG_________________U_____AUUCG...UCA-5'\n_____________|_______________________________|\n_____________91______________________________61\n |
285 -- 291 |
67 -- 73 |
-27.9543 kcal/mol |
7.52451 kcal/mol |
8.62576 kcal/mol |
266 298@LB@ | |@LB@5'-ACC...AUGAG UCCCGA A CU CUC-3'@LB@ GC AACGAC ACAGCGUCAC GCCG@LB@ || |||:|| |||:|:|||| :|||@LB@ CG UUGUUG UGUUGUAGUG UGGC@LB@3'-UUU...GUUAA UUUGUG U AUUCG...UCA-5'@LB@ | |@LB@ 91 61@LB@@LB@@LB@Energy -12.19 kcal/mol@LB@Hybridization Energy -27.9543 kcal/mol@LB@Unfolding Energy - mRNA 7.52451 kcal/mol@LB@Unfolding Energy - sRNA 8.62576 kcal/mol@LB@@LB@Position - mRNA 267 -- 297@LB@Position - sRNA 62 -- 90@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 67 -- 73@LB@ |