105 |
0.005654 |
0.1855 |
b0004 |
thrC |
-10.56 |
0.108775 |
227 -- 299 |
1 -- 79 |
L-threonine synthase |
|
_____________226_____________________________________________________________________________________300\n_____________|_______________________________________________________________________________________|\n5'-CGC...GAUCA____G_G____UCAG____U__GCAA_______CCCAG____________________AAAAU___GG___________________G-3'\n______________CAAC_A_CAGG_____CUU_GC____GCCGUAA___________GGGUU____GGGCA_____CAG__GCUGUUUUUU___CCGCAC\n______________||||_|_||||_____|||_||____|||||||___________|:|||____|||||_____|||__:||||||||:___||||||\n______________GUUG_U_GUCC_____GAA_CG____CGGCAUU___________CUCAA____CCCGU_____GUC__UGACAAAAAG___GGCGUG\n3'-UUU...ACGCG______G____CUUUA___C__ACG________UAAUAAUACUA_____UGUU_____________G___________UCC______-5'\n_____________|______________________________________________________________________________________|\n_____________80_____________________________________________________________________________________1\n |
287 -- 293 |
10 -- 16 |
-55.9039 kcal/mol |
22.5864 kcal/mol |
22.7537 kcal/mol |
226 300@LB@ | |@LB@5'-CGC...GAUCA G G UCAG U GCAA CCCAG AAAAU GG G-3'@LB@ CAAC A CAGG CUU GC GCCGUAA GGGUU GGGCA CAG GCUGUUUUUU CCGCAC@LB@ |||| | |||| ||| || ||||||| |:||| ||||| ||| :||||||||: ||||||@LB@ GUUG U GUCC GAA CG CGGCAUU CUCAA CCCGU GUC UGACAAAAAG GGCGUG@LB@3'-UUU...ACGCG G CUUUA C ACG UAAUAAUACUA UGUU G UCC -5'@LB@ | |@LB@ 80 1@LB@@LB@@LB@Energy -10.56 kcal/mol@LB@Hybridization Energy -55.9039 kcal/mol@LB@Unfolding Energy - mRNA 22.5864 kcal/mol@LB@Unfolding Energy - sRNA 22.7537 kcal/mol@LB@@LB@Position - mRNA 227 -- 299@LB@Position - sRNA 1 -- 79@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 10 -- 16@LB@ |
112 |
0.005982 |
0.1855 |
b1820 |
yobD |
-7.30 |
0.411799 |
229 -- 243 |
1 -- 14 |
UPF0266 family inner membrane protein |
|
_____________228_____________244\n_____________|_______________|\n5'-ACC...GAUUC______UC_______UCCUG...CCC-3'\n______________UUUUCA__GCCGCAC\n______________||||||__|||||||\n______________AAAAGU__CGGCGUG\n3'-UUU...UGACA______C________-5'\n_____________|______________|\n_____________15_____________1\n |
237 -- 243 |
1 -- 7 |
-17.9899 kcal/mol |
4.95197 kcal/mol |
5.72803 kcal/mol |
228 244@LB@ | |@LB@5'-ACC...GAUUC UC UCCUG...CCC-3'@LB@ UUUUCA GCCGCAC@LB@ |||||| |||||||@LB@ AAAAGU CGGCGUG@LB@3'-UUU...UGACA C -5'@LB@ | |@LB@ 15 1@LB@@LB@@LB@Energy -7.30 kcal/mol@LB@Hybridization Energy -17.9899 kcal/mol@LB@Unfolding Energy - mRNA 4.95197 kcal/mol@LB@Unfolding Energy - sRNA 5.72803 kcal/mol@LB@@LB@Position - mRNA 229 -- 243@LB@Position - sRNA 1 -- 14@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 1 -- 7@LB@ |
159 |
0.009346 |
0.2062 |
b3661 |
nlpA |
-7.63 |
0.365650 |
232 -- 240 |
1 -- 9 |
cytoplasmic membrane lipoprotein-28 |
|
_____________231_______241\n_____________|_________|\n5'-UGU...GACAG_________UAUUG...ACA-3'\n______________GGGCCGCAU\n______________:|||||||:\n______________UCCGGCGUG\n3'-UUU...AAAAG_________-5'\n_____________|________|\n_____________10_______1\n |
234 -- 240 |
1 -- 7 |
-16.6231 kcal/mol |
3.46198 kcal/mol |
5.10726 kcal/mol |
231 241@LB@ | |@LB@5'-UGU...GACAG UAUUG...ACA-3'@LB@ GGGCCGCAU@LB@ :|||||||:@LB@ UCCGGCGUG@LB@3'-UUU...AAAAG -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -7.63 kcal/mol@LB@Hybridization Energy -16.6231 kcal/mol@LB@Unfolding Energy - mRNA 3.46198 kcal/mol@LB@Unfolding Energy - sRNA 5.10726 kcal/mol@LB@@LB@Position - mRNA 232 -- 240@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 1 -- 7@LB@ |
95 |
0.005084 |
0.1855 |
b3182 |
dacB |
-12.18 |
0.052827 |
253 -- 263 |
2 -- 12 |
D-alanyl-D-alanine carboxypeptidase |
|
_____________252_________264\n_____________|___________|\n5'-CCG...CAGUG___________AAUGU...GUG-3'\n______________UUCAGGCCGCA\n______________|||||||||||\n______________AAGUCCGGCGU\n3'-UUU...ACAAA___________G-5'\n_____________|___________|\n_____________13__________1\n |
257 -- 263 |
2 -- 8 |
-21.5619 kcal/mol |
3.68722 kcal/mol |
5.66926 kcal/mol |
252 264@LB@ | |@LB@5'-CCG...CAGUG AAUGU...GUG-3'@LB@ UUCAGGCCGCA@LB@ |||||||||||@LB@ AAGUCCGGCGU@LB@3'-UUU...ACAAA G-5'@LB@ | |@LB@ 13 1@LB@@LB@@LB@Energy -12.18 kcal/mol@LB@Hybridization Energy -21.5619 kcal/mol@LB@Unfolding Energy - mRNA 3.68722 kcal/mol@LB@Unfolding Energy - sRNA 5.66926 kcal/mol@LB@@LB@Position - mRNA 253 -- 263@LB@Position - sRNA 2 -- 12@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 2 -- 8@LB@ |
142 |
0.00825 |
0.2033 |
b3457 |
livH |
-8.25 |
0.287512 |
56 -- 64 |
3 -- 11 |
branched-chain amino acid ABC transporter permease |
|
_____________55________65\n_____________|_________|\n5'-GAU...CGUGA_________UGAAC...ACG-3'\n______________UUGGGCCGC\n______________|::||||||\n______________AGUCCGGCG\n3'-UUU...CAAAA_________UG-5'\n_____________|_________|\n_____________12________2\n |
58 -- 64 |
3 -- 9 |
-16.0849 kcal/mol |
2.23282 kcal/mol |
5.54194 kcal/mol |
55 65@LB@ | |@LB@5'-GAU...CGUGA UGAAC...ACG-3'@LB@ UUGGGCCGC@LB@ |::||||||@LB@ AGUCCGGCG@LB@3'-UUU...CAAAA UG-5'@LB@ | |@LB@ 12 2@LB@@LB@@LB@Energy -8.25 kcal/mol@LB@Hybridization Energy -16.0849 kcal/mol@LB@Unfolding Energy - mRNA 2.23282 kcal/mol@LB@Unfolding Energy - sRNA 5.54194 kcal/mol@LB@@LB@Position - mRNA 56 -- 64@LB@Position - sRNA 3 -- 11@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 3 -- 9@LB@ |
186 |
0.01109 |
0.2089 |
b3234 |
degQ |
-11.96 |
0.058310 |
267 -- 277 |
3 -- 13 |
serine endoprotease periplasmic |
|
_____________266_________278\n_____________|___________|\n5'-CUG...CGUCA___________CGCGU...UUG-3'\n______________UUUCAGGCCGU\n______________||||||||||:\n______________AAAGUCCGGCG\n3'-UUU...GACAA___________UG-5'\n_____________|___________|\n_____________14__________2\n |
271 -- 277 |
3 -- 9 |
-19.4081 kcal/mol |
1.79109 kcal/mol |
5.63489 kcal/mol |
266 278@LB@ | |@LB@5'-CUG...CGUCA CGCGU...UUG-3'@LB@ UUUCAGGCCGU@LB@ ||||||||||:@LB@ AAAGUCCGGCG@LB@3'-UUU...GACAA UG-5'@LB@ | |@LB@ 14 2@LB@@LB@@LB@Energy -11.96 kcal/mol@LB@Hybridization Energy -19.4081 kcal/mol@LB@Unfolding Energy - mRNA 1.79109 kcal/mol@LB@Unfolding Energy - sRNA 5.63489 kcal/mol@LB@@LB@Position - mRNA 267 -- 277@LB@Position - sRNA 3 -- 13@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 3 -- 9@LB@ |
66 |
0.003275 |
0.1727 |
b0394 |
mak |
-8.12 |
0.303293 |
18 -- 92 |
5 -- 77 |
manno(fructo)kinase |
|
_____________17_______________________________________________________________________________93\n_____________|________________________________________________________________________________|\n5'-GUU...CUUCU____G___C_______CGC____AA_A_G_____CC____AAUUUUUGA_______________GAUAA____CAC____UUGUC...GUG-3'\n______________GCAC_CAG_GAAAUCU___GGCU__G_C_GUAAA__AUUA_________AC_____CACAGCAU_____UUUC___GGCC\n______________:|||_|||_|||||||___||||__|_|_|||||__||||_________||_____|||||||:_____||||___||||\n______________UGUG_GUC_CUUUAGA___CCGA__C_G_CAUUU__UAAU_________UG_____GUGUCGUG_____AAAG___CCGG\n3'-UUU...GCGGU________C_______A______CG___G_____AA____ACUACUCAA__UUCCC________ACAA_____U______CGUG-5'\n_____________|________________________________________________________________________________|\n_____________78_______________________________________________________________________________4\n |
70 -- 76 |
18 -- 24 |
-46.4183 kcal/mol |
15.5654 kcal/mol |
22.7286 kcal/mol |
17 93@LB@ | |@LB@5'-GUU...CUUCU G C CGC AA A G CC AAUUUUUGA GAUAA CAC UUGUC...GUG-3'@LB@ GCAC CAG GAAAUCU GGCU G C GUAAA AUUA AC CACAGCAU UUUC GGCC@LB@ :||| ||| ||||||| |||| | | ||||| |||| || |||||||: |||| ||||@LB@ UGUG GUC CUUUAGA CCGA C G CAUUU UAAU UG GUGUCGUG AAAG CCGG@LB@3'-UUU...GCGGU C A CG G AA ACUACUCAA UUCCC ACAA U CGUG-5'@LB@ | |@LB@ 78 4@LB@@LB@@LB@Energy -8.12 kcal/mol@LB@Hybridization Energy -46.4183 kcal/mol@LB@Unfolding Energy - mRNA 15.5654 kcal/mol@LB@Unfolding Energy - sRNA 22.7286 kcal/mol@LB@@LB@Position - mRNA 18 -- 92@LB@Position - sRNA 5 -- 77@LB@Position Seed - mRNA 70 -- 76@LB@Position Seed - sRNA 18 -- 24@LB@ |
157 |
0.009216 |
0.2062 |
b3361 |
fic |
-9.77 |
0.153316 |
103 -- 112 |
5 -- 14 |
stationary phase-induced protein putative toxin |
|
_____________102________113\n_____________|__________|\n5'-CGC...CGUAA__________AGUCG...AAC-3'\n______________UUUUCAGGCC\n______________||||||||||\n______________AAAAGUCCGG\n3'-UUU...UGACA__________CGUG-5'\n_____________|__________|\n_____________15_________4\n |
106 -- 112 |
5 -- 11 |
-15.6889 kcal/mol |
1.64573 kcal/mol |
4.24834 kcal/mol |
102 113@LB@ | |@LB@5'-CGC...CGUAA AGUCG...AAC-3'@LB@ UUUUCAGGCC@LB@ ||||||||||@LB@ AAAAGUCCGG@LB@3'-UUU...UGACA CGUG-5'@LB@ | |@LB@ 15 4@LB@@LB@@LB@Energy -9.77 kcal/mol@LB@Hybridization Energy -15.6889 kcal/mol@LB@Unfolding Energy - mRNA 1.64573 kcal/mol@LB@Unfolding Energy - sRNA 4.24834 kcal/mol@LB@@LB@Position - mRNA 103 -- 112@LB@Position - sRNA 5 -- 14@LB@Position Seed - mRNA 106 -- 112@LB@Position Seed - sRNA 5 -- 11@LB@ |
177 |
0.01048 |
0.208 |
b2416 |
ptsI |
-10.21 |
0.127224 |
180 -- 212 |
6 -- 36 |
PEP-protein phosphotransferase of PTS system (enzyme I) |
|
_____________179________________________________213\n_____________|__________________________________|\n5'-GUG...AAAUC___C_____UAA____G___UA__A_________AUUUU...CCG-3'\n______________AGU_ACAAG___GGUA_GGU__UG__UUUCAGGC\n______________|||_|||||___||:|_:|:__||__||||||||\n______________UCA_UGUUC___CCGU_UCG__AC__AAAGUCCG\n3'-UUU...ACUAC___A____________G___UG__AA________GCGUG-5'\n_____________|__________________________________|\n_____________37_________________________________5\n |
206 -- 212 |
6 -- 12 |
-27.3223 kcal/mol |
5.11839 kcal/mol |
11.9979 kcal/mol |
179 213@LB@ | |@LB@5'-GUG...AAAUC C UAA G UA A AUUUU...CCG-3'@LB@ AGU ACAAG GGUA GGU UG UUUCAGGC@LB@ ||| ||||| ||:| :|: || ||||||||@LB@ UCA UGUUC CCGU UCG AC AAAGUCCG@LB@3'-UUU...ACUAC A G UG AA GCGUG-5'@LB@ | |@LB@ 37 5@LB@@LB@@LB@Energy -10.21 kcal/mol@LB@Hybridization Energy -27.3223 kcal/mol@LB@Unfolding Energy - mRNA 5.11839 kcal/mol@LB@Unfolding Energy - sRNA 11.9979 kcal/mol@LB@@LB@Position - mRNA 180 -- 212@LB@Position - sRNA 6 -- 36@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 6 -- 12@LB@ |
185 |
0.01108 |
0.2089 |
b0662 |
ubiF |
-8.33 |
0.279302 |
272 -- 292 |
6 -- 27 |
2-octaprenyl-3-methyl-6-methoxy-1 4-benzoquinol oxygenase |
|
_____________271____________________293\n_____________|______________________|\n5'-AAU...GGGCU____________GA___GC___AACGGUGA-3'\n______________GGCACAGCAC_G__UUU__GGU\n______________||||||||||_|__|||__||:\n______________CCGUGUCGUG_C__AAA__CCG\n3'-UUU...UGUUC__________A_AA___GU___GCGUG-5'\n_____________|______________________|\n_____________28_____________________5\n |
275 -- 281 |
18 -- 24 |
-24.5826 kcal/mol |
6.14687 kcal/mol |
10.1088 kcal/mol |
271 293@LB@ | |@LB@5'-AAU...GGGCU GA GC AACGGUGA-3'@LB@ GGCACAGCAC G UUU GGU@LB@ |||||||||| | ||| ||:@LB@ CCGUGUCGUG C AAA CCG@LB@3'-UUU...UGUUC A AA GU GCGUG-5'@LB@ | |@LB@ 28 5@LB@@LB@@LB@Energy -8.33 kcal/mol@LB@Hybridization Energy -24.5826 kcal/mol@LB@Unfolding Energy - mRNA 6.14687 kcal/mol@LB@Unfolding Energy - sRNA 10.1088 kcal/mol@LB@@LB@Position - mRNA 272 -- 292@LB@Position - sRNA 6 -- 27@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 18 -- 24@LB@ |