| 8 |
1.749e-05 |
0.007346 |
b3294 |
rplQ |
-17.07 |
0.002316 |
5 -- 20 |
29 -- 46 |
50S ribosomal subunit protein L17 |
|
_____________4__________________21\n_____________|__________________|\n_______5'-UAUC____A_____________GUACC...UCA-3'\n______________GGUG___UCUGGUACAGC\n______________||||___:||||||||||\n______________CCAC___GGACCAUGUCG\n3'-UUU...UUCCU____CAA___________AUCGU...UCG-5'\n_____________|__________________|\n_____________47_________________28\n |
14 -- 20 |
29 -- 35 |
-24.8218 kcal/mol |
3.44934 kcal/mol |
4.30059 kcal/mol |
4 21@LB@ | |@LB@ 5'-UAUC A GUACC...UCA-3'@LB@ GGUG UCUGGUACAGC@LB@ |||| :||||||||||@LB@ CCAC GGACCAUGUCG@LB@3'-UUU...UUCCU CAA AUCGU...UCG-5'@LB@ | |@LB@ 47 28@LB@@LB@@LB@Energy -17.07 kcal/mol@LB@Hybridization Energy -24.8218 kcal/mol@LB@Unfolding Energy - mRNA 3.44934 kcal/mol@LB@Unfolding Energy - sRNA 4.30059 kcal/mol@LB@@LB@Position - mRNA 5 -- 20@LB@Position - sRNA 29 -- 46@LB@Position Seed - mRNA 14 -- 20@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 199 |
0.0118 |
0.1975 |
b0077 |
ilvI |
-11.98 |
0.066447 |
6 -- 27 |
1 -- 30 |
acetolactate synthase 3 large subunit |
|
_____________5______________________________28\n_____________|______________________________|\n______5'-AAAUU_______AG_______A_____________CGAUU...UUU-3'\n______________GCU_GUA__UUGUGGG________UUCAGC\n______________|||_|:|__||:||||________||||||\n______________CGA_CGU__AAUACCC________AAGUCG\n3'-UUU...CAUGU___U___AA_______AAUACAAA______-5'\n_____________|_____________________________|\n_____________31____________________________1\n |
14 -- 20 |
15 -- 21 |
-19.3299 kcal/mol |
5.86615 kcal/mol |
1.48556 kcal/mol |
5 28@LB@ | |@LB@ 5'-AAAUU AG A CGAUU...UUU-3'@LB@ GCU GUA UUGUGGG UUCAGC@LB@ ||| |:| ||:|||| ||||||@LB@ CGA CGU AAUACCC AAGUCG@LB@3'-UUU...CAUGU U AA AAUACAAA -5'@LB@ | |@LB@ 31 1@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -19.3299 kcal/mol@LB@Unfolding Energy - mRNA 5.86615 kcal/mol@LB@Unfolding Energy - sRNA 1.48556 kcal/mol@LB@@LB@Position - mRNA 6 -- 27@LB@Position - sRNA 1 -- 30@LB@Position Seed - mRNA 14 -- 20@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 71 |
0.001933 |
0.09081 |
b2044 |
wcaL |
-10.40 |
0.140507 |
12 -- 21 |
24 -- 33 |
putative glycosyl transferase |
|
_____________11_________22\n_____________|__________|\n5'-GGG...AUGCA________G_CUACC...AGA-3'\n______________GCAGCUGG_A\n______________:|||||:|_|\n______________UGUCGAUC_U\n3'-UUU...GACCA________G_AAAAU...UCG-5'\n_____________|__________|\n_____________34_________23\n |
13 -- 19 |
26 -- 32 |
-13.1871 kcal/mol |
1.35791 kcal/mol |
1.42716 kcal/mol |
11 22@LB@ | |@LB@5'-GGG...AUGCA G CUACC...AGA-3'@LB@ GCAGCUGG A@LB@ :|||||:| |@LB@ UGUCGAUC U@LB@3'-UUU...GACCA G AAAAU...UCG-5'@LB@ | |@LB@ 34 23@LB@@LB@@LB@Energy -10.40 kcal/mol@LB@Hybridization Energy -13.1871 kcal/mol@LB@Unfolding Energy - mRNA 1.35791 kcal/mol@LB@Unfolding Energy - sRNA 1.42716 kcal/mol@LB@@LB@Position - mRNA 12 -- 21@LB@Position - sRNA 24 -- 33@LB@Position Seed - mRNA 13 -- 19@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 148 |
0.00721 |
0.1633 |
b0643 |
ybeL |
-14.84 |
0.012433 |
12 -- 39 |
23 -- 48 |
DUF1451 family protein |
|
_____________11___________________________40\n_____________|____________________________|\n5'-AAU...GCGUU____________CAGAU_C__A______AGCCC...CGC-3'\n______________GAGGUGGUUUUU_____C_GC_UAGCAU\n______________|||||||||::|_____|_||_||||||\n______________CUCCACCAAGGA_____G_CG_AUCGUA\n3'-UUU...GAUUC____________CCAU__U_________AAAUA...UCG-5'\n_____________|____________________________|\n_____________49___________________________22\n |
17 -- 23 |
37 -- 43 |
-25.8201 kcal/mol |
6.42089 kcal/mol |
4.55935 kcal/mol |
11 40@LB@ | |@LB@5'-AAU...GCGUU CAGAU C A AGCCC...CGC-3'@LB@ GAGGUGGUUUUU C GC UAGCAU@LB@ |||||||||::| | || ||||||@LB@ CUCCACCAAGGA G CG AUCGUA@LB@3'-UUU...GAUUC CCAU U AAAUA...UCG-5'@LB@ | |@LB@ 49 22@LB@@LB@@LB@Energy -14.84 kcal/mol@LB@Hybridization Energy -25.8201 kcal/mol@LB@Unfolding Energy - mRNA 6.42089 kcal/mol@LB@Unfolding Energy - sRNA 4.55935 kcal/mol@LB@@LB@Position - mRNA 12 -- 39@LB@Position - sRNA 23 -- 48@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 157 |
0.007972 |
0.1694 |
b4350 |
hsdR |
-17.86 |
0.001148 |
15 -- 50 |
1 -- 35 |
endonuclease R Type I restriction enzyme |
|
_____________14____________________________________51\n_____________|_____________________________________|\n5'-UAG...UCAUA_____UC__U___GAAUCA____AG____________UACUA...ACA-3'\n______________GUACA__CU_GCA_______GGU__AUGUUUUUCGGC\n______________|||||__||_|||_______|||__|||||||||:||\n______________CAUGU__GA_CGU_______CCA__UACAAAAAGUCG\n3'-UUU...AGGAC_____C___U___AAAAUAC___A_____________-5'\n_____________|____________________________________|\n_____________36___________________________________1\n |
44 -- 50 |
1 -- 7 |
-27.1826 kcal/mol |
7.83025 kcal/mol |
1.49508 kcal/mol |
14 51@LB@ | |@LB@5'-UAG...UCAUA UC U GAAUCA AG UACUA...ACA-3'@LB@ GUACA CU GCA GGU AUGUUUUUCGGC@LB@ ||||| || ||| ||| |||||||||:||@LB@ CAUGU GA CGU CCA UACAAAAAGUCG@LB@3'-UUU...AGGAC C U AAAAUAC A -5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -17.86 kcal/mol@LB@Hybridization Energy -27.1826 kcal/mol@LB@Unfolding Energy - mRNA 7.83025 kcal/mol@LB@Unfolding Energy - sRNA 1.49508 kcal/mol@LB@@LB@Position - mRNA 15 -- 50@LB@Position - sRNA 1 -- 35@LB@Position Seed - mRNA 44 -- 50@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 87 |
0.00283 |
0.1082 |
b0657 |
lnt |
-15.14 |
0.010132 |
15 -- 41 |
15 -- 46 |
apolipoprotein N-acyltransferase |
|
_____________14_______________________________42\n_____________|________________________________|\n5'-AAG...CUAUC______________AU__A_____________CAUCU...UCU-3'\n______________GGUGG__UCUGGUG__GC_GGCAUU___UGGG\n______________|||||__:|||||:__||_:|||||___||||\n______________CCACC__GGACCAU__CG_UCGUAA___ACCC\n3'-UUU...UUCCU_____AA_______GU__A______AAU____AAUAC...UCG-5'\n_____________|________________________________|\n_____________47_______________________________14\n |
20 -- 26 |
33 -- 39 |
-31.43 kcal/mol |
11.7158 kcal/mol |
4.57271 kcal/mol |
14 42@LB@ | |@LB@5'-AAG...CUAUC AU A CAUCU...UCU-3'@LB@ GGUGG UCUGGUG GC GGCAUU UGGG@LB@ ||||| :|||||: || :||||| ||||@LB@ CCACC GGACCAU CG UCGUAA ACCC@LB@3'-UUU...UUCCU AA GU A AAU AAUAC...UCG-5'@LB@ | |@LB@ 47 14@LB@@LB@@LB@Energy -15.14 kcal/mol@LB@Hybridization Energy -31.43 kcal/mol@LB@Unfolding Energy - mRNA 11.7158 kcal/mol@LB@Unfolding Energy - sRNA 4.57271 kcal/mol@LB@@LB@Position - mRNA 15 -- 41@LB@Position - sRNA 15 -- 46@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 164 |
0.008548 |
0.1748 |
b0461 |
tomB |
-9.85 |
0.177976 |
15 -- 39 |
9 -- 30 |
Hha toxicity attenuator; conjugation-related protein |
|
_____________14________________________40\n_____________|_________________________|\n5'-UGC...UUAGU________GAAAAA___A__CC___CCCGC...AUC-3'\n______________GCUAGUAU______GUG_GU__UGU\n______________|||||:||______:||_||__|||\n______________CGAUCGUA______UAC_CA__ACA\n3'-UUU...CAUGU________AAA______C__AU___AAAAGUCG-5'\n_____________|_________________________|\n_____________31________________________8\n |
16 -- 22 |
23 -- 29 |
-13.2091 kcal/mol |
1.89111 kcal/mol |
1.4702 kcal/mol |
14 40@LB@ | |@LB@5'-UGC...UUAGU GAAAAA A CC CCCGC...AUC-3'@LB@ GCUAGUAU GUG GU UGU@LB@ |||||:|| :|| || |||@LB@ CGAUCGUA UAC CA ACA@LB@3'-UUU...CAUGU AAA C AU AAAAGUCG-5'@LB@ | |@LB@ 31 8@LB@@LB@@LB@Energy -9.85 kcal/mol@LB@Hybridization Energy -13.2091 kcal/mol@LB@Unfolding Energy - mRNA 1.89111 kcal/mol@LB@Unfolding Energy - sRNA 1.4702 kcal/mol@LB@@LB@Position - mRNA 15 -- 39@LB@Position - sRNA 9 -- 30@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 93 |
0.003115 |
0.1126 |
b2595 |
bamD |
-5.90 |
0.625252 |
19 -- 35 |
31 -- 48 |
BamABCDE complex OM biogenesis lipoprotein |
|
_____________18_________________36\n_____________|__________________|\n5'-CUG...UGACC___U_______C______CCGUU...AUG-3'\n______________GAG_UGGUUUU_GG_ACA\n______________|||_|||||::_||_|||\n______________CUC_ACCAAGG_CC_UGU\n3'-UUU...GAUUC___C_______A__A___CGAUC...UCG-5'\n_____________|__________________|\n_____________49_________________30\n |
23 -- 29 |
38 -- 44 |
-14.3523 kcal/mol |
5.2001 kcal/mol |
3.25694 kcal/mol |
18 36@LB@ | |@LB@5'-CUG...UGACC U C CCGUU...AUG-3'@LB@ GAG UGGUUUU GG ACA@LB@ ||| |||||:: || |||@LB@ CUC ACCAAGG CC UGU@LB@3'-UUU...GAUUC C A A CGAUC...UCG-5'@LB@ | |@LB@ 49 30@LB@@LB@@LB@Energy -5.90 kcal/mol@LB@Hybridization Energy -14.3523 kcal/mol@LB@Unfolding Energy - mRNA 5.2001 kcal/mol@LB@Unfolding Energy - sRNA 3.25694 kcal/mol@LB@@LB@Position - mRNA 19 -- 35@LB@Position - sRNA 31 -- 48@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 48 |
0.001117 |
0.07744 |
b2829 |
ptsP |
-13.12 |
0.035810 |
22 -- 37 |
14 -- 33 |
PEP-protein phosphotransferase enzyme I; GAF domain containing protein |
|
_____________21___________________38\n_____________|____________________|\n5'-CCA...GUUUG____________________AAGUU...UGG-3'\n______________ACGGCUGGCG____AUGGGU\n______________||:|||:||:____||||||\n______________UGUCGAUCGU____UACCCA\n3'-UUU...GACCA__________AAAA______AUACA...UCG-5'\n_____________|____________________|\n_____________34___________________13\n |
25 -- 31 |
24 -- 30 |
-23.1334 kcal/mol |
8.56068 kcal/mol |
1.44884 kcal/mol |
21 38@LB@ | |@LB@5'-CCA...GUUUG AAGUU...UGG-3'@LB@ ACGGCUGGCG AUGGGU@LB@ ||:|||:||: ||||||@LB@ UGUCGAUCGU UACCCA@LB@3'-UUU...GACCA AAAA AUACA...UCG-5'@LB@ | |@LB@ 34 13@LB@@LB@@LB@Energy -13.12 kcal/mol@LB@Hybridization Energy -23.1334 kcal/mol@LB@Unfolding Energy - mRNA 8.56068 kcal/mol@LB@Unfolding Energy - sRNA 1.44884 kcal/mol@LB@@LB@Position - mRNA 22 -- 37@LB@Position - sRNA 14 -- 33@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 1 |
0 |
0 |
b3824 |
rhtB |
-9.47 |
0.207720 |
26 -- 71 |
1 -- 43 |
homoserine homoserine lactone and S-methyl-methionine efflux pump |
|
_____________25_________________________________________________72\n_____________|__________________________________________________|\n5'-ACG...UCAGC___C__A____AAAA_____AAAC_______CUCU_________CC____CUUUU...ACC-3'\n______________GGU_CC_UGGU____GCAGC____GCGUUUU________UGUUU__CAGU\n______________|||_||_||||____:||||____||:||||________|||||__|||:\n______________CCA_GG_ACCA____UGUCG____CGUAAAA________ACAAA__GUCG\n3'-UUU...CUCCA___A________________AU_________UACCCAAU_____AA____-5'\n_____________|_________________________________________________|\n_____________44________________________________________________1\n |
50 -- 56 |
20 -- 26 |
-25.7164 kcal/mol |
11.6412 kcal/mol |
4.6088 kcal/mol |
25 72@LB@ | |@LB@5'-ACG...UCAGC C A AAAA AAAC CUCU CC CUUUU...ACC-3'@LB@ GGU CC UGGU GCAGC GCGUUUU UGUUU CAGU@LB@ ||| || |||| :|||| ||:|||| ||||| |||:@LB@ CCA GG ACCA UGUCG CGUAAAA ACAAA GUCG@LB@3'-UUU...CUCCA A AU UACCCAAU AA -5'@LB@ | |@LB@ 44 1@LB@@LB@@LB@Energy -9.47 kcal/mol@LB@Hybridization Energy -25.7164 kcal/mol@LB@Unfolding Energy - mRNA 11.6412 kcal/mol@LB@Unfolding Energy - sRNA 4.6088 kcal/mol@LB@@LB@Position - mRNA 26 -- 71@LB@Position - sRNA 1 -- 43@LB@Position Seed - mRNA 50 -- 56@LB@Position Seed - sRNA 20 -- 26@LB@ |
