| 11 |
0.002274 |
0.593 |
b1476 |
fdnI |
-10.73 |
0.029150 |
152 -- 175 |
44 -- 69 |
formate dehydrogenase-N cytochrome B556 (gamma) subunit nitrate-inducible |
|
_____________151________________________176\n_____________|__________________________|\n5'-CGU...ACUAC____G______________UA_____GUGGA...UUU-3'\n______________AUCG_UAUUGGCCCG__AA__AGGAA\n______________||||_||||||||||__||__|||||\n______________UAGC_AUAACCGGGC__UU__UCCUU\n3'-UUU...GGUUA____G__________AG__UC_____AAAGU...ACA-5'\n_____________|__________________________|\n_____________70_________________________43\n |
160 -- 166 |
55 -- 61 |
-29.2423 kcal/mol |
7.20098 kcal/mol |
11.3099 kcal/mol |
151 176@LB@ | |@LB@5'-CGU...ACUAC G UA GUGGA...UUU-3'@LB@ AUCG UAUUGGCCCG AA AGGAA@LB@ |||| |||||||||| || |||||@LB@ UAGC AUAACCGGGC UU UCCUU@LB@3'-UUU...GGUUA G AG UC AAAGU...ACA-5'@LB@ | |@LB@ 70 43@LB@@LB@@LB@Energy -10.73 kcal/mol@LB@Hybridization Energy -29.2423 kcal/mol@LB@Unfolding Energy - mRNA 7.20098 kcal/mol@LB@Unfolding Energy - sRNA 11.3099 kcal/mol@LB@@LB@Position - mRNA 152 -- 175@LB@Position - sRNA 44 -- 69@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 12 |
0.002398 |
0.593 |
b1114 |
mfd |
-13.52 |
0.007793 |
210 -- 241 |
45 -- 73 |
transcription-repair coupling factor |
|
_____________209______________________________242\n_____________|________________________________|\n5'-UUC...CUGAA____________ACGCU___________C___UGAGC...AAA-3'\n______________CAAUAUCGUUAU_____GCCCGUCAAAG_GGG\n______________||||||||:|||_____|||||||||||_||:\n______________GUUAUAGCGAUA_____CGGGCAGUUUC_CCU\n3'-UUU...UACCG____________AC______________U___UAAAG...ACA-5'\n_____________|________________________________|\n_____________74_______________________________44\n |
231 -- 237 |
49 -- 55 |
-37.142 kcal/mol |
12.2919 kcal/mol |
11.3343 kcal/mol |
209 242@LB@ | |@LB@5'-UUC...CUGAA ACGCU C UGAGC...AAA-3'@LB@ CAAUAUCGUUAU GCCCGUCAAAG GGG@LB@ ||||||||:||| ||||||||||| ||:@LB@ GUUAUAGCGAUA CGGGCAGUUUC CCU@LB@3'-UUU...UACCG AC U UAAAG...ACA-5'@LB@ | |@LB@ 74 44@LB@@LB@@LB@Energy -13.52 kcal/mol@LB@Hybridization Energy -37.142 kcal/mol@LB@Unfolding Energy - mRNA 12.2919 kcal/mol@LB@Unfolding Energy - sRNA 11.3343 kcal/mol@LB@@LB@Position - mRNA 210 -- 241@LB@Position - sRNA 45 -- 73@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 13 |
0.003065 |
0.593 |
b4529 |
ydbJ |
-10.82 |
0.027981 |
161 -- 194 |
44 -- 78 |
DUF333 family putative lipoprotein |
|
_____________160___________________________________195\n_____________|_____________________________________|\n5'-GCA...UAUUU________________________AA__UC_______GAAAA...GUU-3'\n______________AUGG_CGGUGUCGU__UUGGCUUG__GA__AGAGGAA\n______________||||_|::|:|||:__|||||::|__:|__|||||||\n______________UACC_GUUAUAGCG__AACCGGGC__UU__UCUCCUU\n_____3'-UUUUUU____G_________AU________AG___________AAAGU...ACA-5'\n_____________|_____________________________________|\n_____________79____________________________________43\n |
188 -- 194 |
44 -- 50 |
-34.9495 kcal/mol |
10.5981 kcal/mol |
13.5333 kcal/mol |
160 195@LB@ | |@LB@5'-GCA...UAUUU AA UC GAAAA...GUU-3'@LB@ AUGG CGGUGUCGU UUGGCUUG GA AGAGGAA@LB@ |||| |::|:|||: |||||::| :| |||||||@LB@ UACC GUUAUAGCG AACCGGGC UU UCUCCUU@LB@ 3'-UUUUUU G AU AG AAAGU...ACA-5'@LB@ | |@LB@ 79 43@LB@@LB@@LB@Energy -10.82 kcal/mol@LB@Hybridization Energy -34.9495 kcal/mol@LB@Unfolding Energy - mRNA 10.5981 kcal/mol@LB@Unfolding Energy - sRNA 13.5333 kcal/mol@LB@@LB@Position - mRNA 161 -- 194@LB@Position - sRNA 44 -- 78@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 14 |
0.003078 |
0.593 |
b0886 |
cydC |
-10.90 |
0.026971 |
183 -- 199 |
39 -- 56 |
glutathione/cysteine ABC transporter export permease/ATPase |
|
_____________182________________200\n_____________|__________________|\n5'-GCG...CCCAU_____________A____AAUGC...UCG-3'\n______________CGUC_AGGAGGAG_UUUA\n______________||||_|:|||||:_||:|\n______________GCAG_UUCUCCUU_AAGU\n3'-UUU...ACCGG____U________A____AAAAA...ACA-5'\n_____________|__________________|\n_____________57_________________38\n |
188 -- 194 |
44 -- 50 |
-16.2318 kcal/mol |
4.17801 kcal/mol |
1.15786 kcal/mol |
182 200@LB@ | |@LB@5'-GCG...CCCAU A AAUGC...UCG-3'@LB@ CGUC AGGAGGAG UUUA@LB@ |||| |:|||||: ||:|@LB@ GCAG UUCUCCUU AAGU@LB@3'-UUU...ACCGG U A AAAAA...ACA-5'@LB@ | |@LB@ 57 38@LB@@LB@@LB@Energy -10.90 kcal/mol@LB@Hybridization Energy -16.2318 kcal/mol@LB@Unfolding Energy - mRNA 4.17801 kcal/mol@LB@Unfolding Energy - sRNA 1.15786 kcal/mol@LB@@LB@Position - mRNA 183 -- 199@LB@Position - sRNA 39 -- 56@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 15 |
0.003313 |
0.593 |
b3133 |
agaV |
-12.53 |
0.012445 |
185 -- 194 |
44 -- 53 |
N-acetylgalactosamine-specific enzyme IIB component of PTS |
|
_____________184________195\n_____________|__________|\n5'-UCA...CAAAA__________CACGC...UAG-3'\n______________CAAAGAGGAA\n______________||||||||||\n______________GUUUCUCCUU\n3'-UUU...GGGCA__________AAAGU...ACA-5'\n_____________|__________|\n_____________54_________43\n |
188 -- 194 |
44 -- 50 |
-14.1596 kcal/mol |
0.702602 kcal/mol |
0.927997 kcal/mol |
184 195@LB@ | |@LB@5'-UCA...CAAAA CACGC...UAG-3'@LB@ CAAAGAGGAA@LB@ ||||||||||@LB@ GUUUCUCCUU@LB@3'-UUU...GGGCA AAAGU...ACA-5'@LB@ | |@LB@ 54 43@LB@@LB@@LB@Energy -12.53 kcal/mol@LB@Hybridization Energy -14.1596 kcal/mol@LB@Unfolding Energy - mRNA 0.702602 kcal/mol@LB@Unfolding Energy - sRNA 0.927997 kcal/mol@LB@@LB@Position - mRNA 185 -- 194@LB@Position - sRNA 44 -- 53@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 16 |
0.003381 |
0.593 |
b0956 |
matP |
-12.11 |
0.015217 |
269 -- 280 |
42 -- 53 |
Ter macrodomain organizer matS-binding protein |
|
_____________268__________281\n_____________|____________|\n5'-UUU...CAUCG____________AAUCA...AAG-3'\n______________CGAAGGGGAGUU\n______________|:|||:|||:||\n______________GUUUCUCCUUAA\n3'-UUU...GGGCA____________AGUAA...ACA-5'\n_____________|____________|\n_____________54___________41\n |
274 -- 280 |
42 -- 48 |
-15.3716 kcal/mol |
2.33274 kcal/mol |
0.933904 kcal/mol |
268 281@LB@ | |@LB@5'-UUU...CAUCG AAUCA...AAG-3'@LB@ CGAAGGGGAGUU@LB@ |:|||:|||:||@LB@ GUUUCUCCUUAA@LB@3'-UUU...GGGCA AGUAA...ACA-5'@LB@ | |@LB@ 54 41@LB@@LB@@LB@Energy -12.11 kcal/mol@LB@Hybridization Energy -15.3716 kcal/mol@LB@Unfolding Energy - mRNA 2.33274 kcal/mol@LB@Unfolding Energy - sRNA 0.933904 kcal/mol@LB@@LB@Position - mRNA 269 -- 280@LB@Position - sRNA 42 -- 53@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 17 |
0.003407 |
0.593 |
b3607 |
cysE |
-9.56 |
0.050591 |
4 -- 44 |
27 -- 56 |
serine acetyltransferase |
|
_____________3__________________________________________45\n_____________|__________________________________________|\n________5'-CGG_______AUGCCAAUAACC______A_____CAAG_______AUUGC...CGA-3'\n______________CGUUGAA____________GAGGAA_UUUAU_____UAUUAU\n______________|||::||____________||||||_||:||_____||||||\n______________GCAGUUU____________CUCCUU_AAGUA_____AUAAUA\n3'-UUU...ACCGG_________________________A_____AAAAA______AUACG...ACA-5'\n_____________|__________________________________________|\n_____________57_________________________________________26\n |
4 -- 10 |
50 -- 56 |
-14.2001 kcal/mol |
3.44433 kcal/mol |
1.19682 kcal/mol |
3 45@LB@ | |@LB@ 5'-CGG AUGCCAAUAACC A CAAG AUUGC...CGA-3'@LB@ CGUUGAA GAGGAA UUUAU UAUUAU@LB@ |||::|| |||||| ||:|| ||||||@LB@ GCAGUUU CUCCUU AAGUA AUAAUA@LB@3'-UUU...ACCGG A AAAAA AUACG...ACA-5'@LB@ | |@LB@ 57 26@LB@@LB@@LB@Energy -9.56 kcal/mol@LB@Hybridization Energy -14.2001 kcal/mol@LB@Unfolding Energy - mRNA 3.44433 kcal/mol@LB@Unfolding Energy - sRNA 1.19682 kcal/mol@LB@@LB@Position - mRNA 4 -- 44@LB@Position - sRNA 27 -- 56@LB@Position Seed - mRNA 4 -- 10@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 18 |
0.003456 |
0.593 |
b0867 |
amiD |
-11.23 |
0.023022 |
276 -- 289 |
39 -- 52 |
1 6-anhydro-N-acetylmuramyl-L-alanine amidase Zn-dependent; OM lipoprotein |
|
_____________275____________290\n_____________|______________|\n5'-GAU...UCGAG__________A___GCUUG...CCC-3'\n______________AAAGAGGGAU_UCA\n______________|||||||:||_|||\n______________UUUCUCCUUA_AGU\n3'-UUU...GGCAG__________A___AAAAA...ACA-5'\n_____________|______________|\n_____________53_____________38\n |
279 -- 285 |
43 -- 49 |
-14.4178 kcal/mol |
2.13665 kcal/mol |
1.05043 kcal/mol |
275 290@LB@ | |@LB@5'-GAU...UCGAG A GCUUG...CCC-3'@LB@ AAAGAGGGAU UCA@LB@ |||||||:|| |||@LB@ UUUCUCCUUA AGU@LB@3'-UUU...GGCAG A AAAAA...ACA-5'@LB@ | |@LB@ 53 38@LB@@LB@@LB@Energy -11.23 kcal/mol@LB@Hybridization Energy -14.4178 kcal/mol@LB@Unfolding Energy - mRNA 2.13665 kcal/mol@LB@Unfolding Energy - sRNA 1.05043 kcal/mol@LB@@LB@Position - mRNA 276 -- 289@LB@Position - sRNA 39 -- 52@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 19 |
0.003501 |
0.593 |
b2019 |
hisG |
-12.73 |
0.011332 |
183 -- 194 |
43 -- 54 |
ATP phosphoribosyltransferase |
|
_____________182__________195\n_____________|____________|\n5'-UUU...CAGGU____________AACAA...AUC-3'\n______________UUAAAGAGGAAU\n______________|:||||||||||\n______________AGUUUCUCCUUA\n3'-UUU...CGGGC____________AAGUA...ACA-5'\n_____________|____________|\n_____________55___________42\n |
188 -- 194 |
43 -- 49 |
-14.9017 kcal/mol |
1.23041 kcal/mol |
0.944705 kcal/mol |
182 195@LB@ | |@LB@5'-UUU...CAGGU AACAA...AUC-3'@LB@ UUAAAGAGGAAU@LB@ |:||||||||||@LB@ AGUUUCUCCUUA@LB@3'-UUU...CGGGC AAGUA...ACA-5'@LB@ | |@LB@ 55 42@LB@@LB@@LB@Energy -12.73 kcal/mol@LB@Hybridization Energy -14.9017 kcal/mol@LB@Unfolding Energy - mRNA 1.23041 kcal/mol@LB@Unfolding Energy - sRNA 0.944705 kcal/mol@LB@@LB@Position - mRNA 183 -- 194@LB@Position - sRNA 43 -- 54@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 20 |
0.00399 |
0.5992 |
b4175 |
hflC |
-10.54 |
0.031960 |
184 -- 196 |
43 -- 56 |
HflB protease modulator specific for phage lambda cII repressor |
|
_____________183____________197\n_____________|______________|\n5'-UUA...ACCAG______________AACGA...GUU-3'\n______________CGUCAGGG_GGAAU\n______________|||||::|_|||||\n______________GCAGUUUC_CCUUA\n3'-UUU...ACCGG________U_____AAGUA...ACA-5'\n_____________|______________|\n_____________57_____________42\n |
185 -- 191 |
49 -- 55 |
-15.8123 kcal/mol |
4.32193 kcal/mol |
0.953958 kcal/mol |
183 197@LB@ | |@LB@5'-UUA...ACCAG AACGA...GUU-3'@LB@ CGUCAGGG GGAAU@LB@ |||||::| |||||@LB@ GCAGUUUC CCUUA@LB@3'-UUU...ACCGG U AAGUA...ACA-5'@LB@ | |@LB@ 57 42@LB@@LB@@LB@Energy -10.54 kcal/mol@LB@Hybridization Energy -15.8123 kcal/mol@LB@Unfolding Energy - mRNA 4.32193 kcal/mol@LB@Unfolding Energy - sRNA 0.953958 kcal/mol@LB@@LB@Position - mRNA 184 -- 196@LB@Position - sRNA 43 -- 56@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 49 -- 55@LB@ |
