29 |
0.005218 |
0.5385 |
b3433 |
asd |
-11.22 |
0.064904 |
208 -- 219 |
71 -- 82 |
aspartate-semialdehyde dehydrogenase NAD(P)-binding |
|
_____________207__________220\n_____________|____________|\n5'-UCA...GAAAA____________UCGGC...UCU-3'\n______________AUGUUGGUUUUA\n______________|:|||||:||||\n______________UGCAACCGAAAU\n3'-CGC...UCAAG____________CAAUA...AAG-5'\n_____________|____________|\n_____________83___________70\n |
213 -- 219 |
71 -- 77 |
-13.9075 kcal/mol |
2.30708 kcal/mol |
0.38228 kcal/mol |
207 220@LB@ | |@LB@5'-UCA...GAAAA UCGGC...UCU-3'@LB@ AUGUUGGUUUUA@LB@ |:|||||:||||@LB@ UGCAACCGAAAU@LB@3'-CGC...UCAAG CAAUA...AAG-5'@LB@ | |@LB@ 83 70@LB@@LB@@LB@Energy -11.22 kcal/mol@LB@Hybridization Energy -13.9075 kcal/mol@LB@Unfolding Energy - mRNA 2.30708 kcal/mol@LB@Unfolding Energy - sRNA 0.38228 kcal/mol@LB@@LB@Position - mRNA 208 -- 219@LB@Position - sRNA 71 -- 82@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 71 -- 77@LB@ |
38 |
0.006978 |
0.5385 |
b3738 |
atpB |
-10.53 |
0.085759 |
128 -- 143 |
69 -- 84 |
F0 sector of membrane-bound ATP synthase subunit a |
|
_____________127______________144\n_____________|________________|\n5'-CAU...GAUCG______G_________GCUGG...ACC-3'\n______________UUACGU_GGUUUUGGU\n______________|:||||_||:|||:||\n______________AGUGCA_CCGAAAUCA\n3'-CGC...UUUCA______A_________AUAAG...AAG-5'\n_____________|________________|\n_____________85_______________68\n |
137 -- 143 |
69 -- 75 |
-16.8893 kcal/mol |
5.79988 kcal/mol |
0.563592 kcal/mol |
127 144@LB@ | |@LB@5'-CAU...GAUCG G GCUGG...ACC-3'@LB@ UUACGU GGUUUUGGU@LB@ |:|||| ||:|||:||@LB@ AGUGCA CCGAAAUCA@LB@3'-CGC...UUUCA A AUAAG...AAG-5'@LB@ | |@LB@ 85 68@LB@@LB@@LB@Energy -10.53 kcal/mol@LB@Hybridization Energy -16.8893 kcal/mol@LB@Unfolding Energy - mRNA 5.79988 kcal/mol@LB@Unfolding Energy - sRNA 0.563592 kcal/mol@LB@@LB@Position - mRNA 128 -- 143@LB@Position - sRNA 69 -- 84@LB@Position Seed - mRNA 137 -- 143@LB@Position Seed - sRNA 69 -- 75@LB@ |
19 |
0.003195 |
0.5385 |
b3739 |
atpI |
-12.12 |
0.045044 |
59 -- 85 |
62 -- 85 |
ATP synthase membrane-bound accessory factor |
|
_____________58___________________________86\n_____________|____________________________|\n5'-GAA...AUUUA_____CUU______AC____________AAUCA...ACC-3'\n______________UUCAC___UUGGCU__UUA_UUGUUUGA\n______________|||||___||||||__|||_||:||:||\n______________AAGUG___AACCGA__AAU_AAUAAGCU\n3'-CGC...UUUUC_____C_____________C________CAACU...AAG-5'\n_____________|____________________________|\n_____________86___________________________61\n |
79 -- 85 |
62 -- 68 |
-17.7596 kcal/mol |
3.93623 kcal/mol |
1.70582 kcal/mol |
58 86@LB@ | |@LB@5'-GAA...AUUUA CUU AC AAUCA...ACC-3'@LB@ UUCAC UUGGCU UUA UUGUUUGA@LB@ ||||| |||||| ||| ||:||:||@LB@ AAGUG AACCGA AAU AAUAAGCU@LB@3'-CGC...UUUUC C C CAACU...AAG-5'@LB@ | |@LB@ 86 61@LB@@LB@@LB@Energy -12.12 kcal/mol@LB@Hybridization Energy -17.7596 kcal/mol@LB@Unfolding Energy - mRNA 3.93623 kcal/mol@LB@Unfolding Energy - sRNA 1.70582 kcal/mol@LB@@LB@Position - mRNA 59 -- 85@LB@Position - sRNA 62 -- 85@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 62 -- 68@LB@ |
127 |
0.02181 |
0.5385 |
b3057 |
bacA |
-7.57 |
0.267037 |
62 -- 69 |
75 -- 82 |
undecaprenyl pyrophosphate phosphatase |
|
_____________61_______70\n_____________|________|\n5'-UUC...GGCGA________GUAAU...UUG-3'\n______________AUGUUGGC\n______________|:||||||\n______________UGCAACCG\n3'-CGC...UCAAG________AAAUC...AAG-5'\n_____________|________|\n_____________83_______74\n |
63 -- 69 |
75 -- 81 |
-12.0605 kcal/mol |
4.15225 kcal/mol |
0.339284 kcal/mol |
61 70@LB@ | |@LB@5'-UUC...GGCGA GUAAU...UUG-3'@LB@ AUGUUGGC@LB@ |:||||||@LB@ UGCAACCG@LB@3'-CGC...UCAAG AAAUC...AAG-5'@LB@ | |@LB@ 83 74@LB@@LB@@LB@Energy -7.57 kcal/mol@LB@Hybridization Energy -12.0605 kcal/mol@LB@Unfolding Energy - mRNA 4.15225 kcal/mol@LB@Unfolding Energy - sRNA 0.339284 kcal/mol@LB@@LB@Position - mRNA 62 -- 69@LB@Position - sRNA 75 -- 82@LB@Position Seed - mRNA 63 -- 69@LB@Position Seed - sRNA 75 -- 81@LB@ |
133 |
0.02275 |
0.5385 |
b0177 |
bamA |
-6.79 |
0.350358 |
265 -- 271 |
23 -- 29 |
BamABCDE complex OM biogenesis outer membrane pore-forming assembly factor |
|
_____________264_____272\n_____________|_______|\n5'-CUG...UGCUG_______CGUAG...GCC-3'\n______________AAGGGUU\n______________|||||||\n______________UUCCCAA\n3'-CGC...UGAAG_______UUUUC...AAG-5'\n_____________|_______|\n_____________30______22\n |
265 -- 271 |
23 -- 29 |
-7.93739 kcal/mol |
1.09969 kcal/mol |
0.0462613 kcal/mol |
264 272@LB@ | |@LB@5'-CUG...UGCUG CGUAG...GCC-3'@LB@ AAGGGUU@LB@ |||||||@LB@ UUCCCAA@LB@3'-CGC...UGAAG UUUUC...AAG-5'@LB@ | |@LB@ 30 22@LB@@LB@@LB@Energy -6.79 kcal/mol@LB@Hybridization Energy -7.93739 kcal/mol@LB@Unfolding Energy - mRNA 1.09969 kcal/mol@LB@Unfolding Energy - sRNA 0.0462613 kcal/mol@LB@@LB@Position - mRNA 265 -- 271@LB@Position - sRNA 23 -- 29@LB@Position Seed - mRNA 265 -- 271@LB@Position Seed - sRNA 23 -- 29@LB@ |
58 |
0.01138 |
0.5385 |
b2595 |
bamD |
-7.85 |
0.240744 |
21 -- 29 |
72 -- 80 |
BamABCDE complex OM biogenesis lipoprotein |
|
_____________20________30\n_____________|_________|\n5'-CUG...ACCGA_________CGGAC...AUG-3'\n______________GUUGGUUUU\n______________|||||:|||\n______________CAACCGAAA\n3'-CGC...AAGUG_________UCAAU...AAG-5'\n_____________|_________|\n_____________81________71\n |
23 -- 29 |
72 -- 78 |
-10.2023 kcal/mol |
2.1418 kcal/mol |
0.205868 kcal/mol |
20 30@LB@ | |@LB@5'-CUG...ACCGA CGGAC...AUG-3'@LB@ GUUGGUUUU@LB@ |||||:|||@LB@ CAACCGAAA@LB@3'-CGC...AAGUG UCAAU...AAG-5'@LB@ | |@LB@ 81 71@LB@@LB@@LB@Energy -7.85 kcal/mol@LB@Hybridization Energy -10.2023 kcal/mol@LB@Unfolding Energy - mRNA 2.1418 kcal/mol@LB@Unfolding Energy - sRNA 0.205868 kcal/mol@LB@@LB@Position - mRNA 21 -- 29@LB@Position - sRNA 72 -- 80@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 72 -- 78@LB@ |
9 |
0.0016 |
0.5385 |
b1709 |
btuD |
-9.25 |
0.141890 |
185 -- 194 |
75 -- 84 |
vitamin B12 ABC transporter ATPase |
|
_____________184________195\n_____________|__________|\n5'-GCA...UAAAC_G________AAAAU...GGC-3'\n______________U_GCGUUGGC\n______________|_:|||||||\n______________A_UGCAACCG\n3'-CGC...UUUCA_G________AAAUC...AAG-5'\n_____________|__________|\n_____________85_________74\n |
188 -- 194 |
75 -- 81 |
-15.1998 kcal/mol |
5.44246 kcal/mol |
0.505918 kcal/mol |
184 195@LB@ | |@LB@5'-GCA...UAAAC G AAAAU...GGC-3'@LB@ U GCGUUGGC@LB@ | :|||||||@LB@ A UGCAACCG@LB@3'-CGC...UUUCA G AAAUC...AAG-5'@LB@ | |@LB@ 85 74@LB@@LB@@LB@Energy -9.25 kcal/mol@LB@Hybridization Energy -15.1998 kcal/mol@LB@Unfolding Energy - mRNA 5.44246 kcal/mol@LB@Unfolding Energy - sRNA 0.505918 kcal/mol@LB@@LB@Position - mRNA 185 -- 194@LB@Position - sRNA 75 -- 84@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 75 -- 81@LB@ |
120 |
0.02045 |
0.5385 |
b0979 |
cbdB |
-12.05 |
0.046235 |
177 -- 194 |
16 -- 34 |
cytochrome bd-II oxidase subunit II |
|
_____________176_________________195\n_____________|___________________|\n5'-AUA...ACGCA__AA_______________AAAAU...GCU-3'\n______________GC__CAGGGG_UAAAGGAG\n______________:|__||:|||_||||:|||\n______________UG__GUUCCC_AUUUUCUC\n3'-CGC...GUCAC__AA______A________CACGG...AAG-5'\n_____________|___________________|\n_____________35__________________15\n |
188 -- 194 |
16 -- 22 |
-18.7902 kcal/mol |
3.40633 kcal/mol |
3.33043 kcal/mol |
176 195@LB@ | |@LB@5'-AUA...ACGCA AA AAAAU...GCU-3'@LB@ GC CAGGGG UAAAGGAG@LB@ :| ||:||| ||||:|||@LB@ UG GUUCCC AUUUUCUC@LB@3'-CGC...GUCAC AA A CACGG...AAG-5'@LB@ | |@LB@ 35 15@LB@@LB@@LB@Energy -12.05 kcal/mol@LB@Hybridization Energy -18.7902 kcal/mol@LB@Unfolding Energy - mRNA 3.40633 kcal/mol@LB@Unfolding Energy - sRNA 3.33043 kcal/mol@LB@@LB@Position - mRNA 177 -- 194@LB@Position - sRNA 16 -- 34@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 16 -- 22@LB@ |
105 |
0.01788 |
0.5385 |
b0619 |
citA |
-6.78 |
0.351941 |
4 -- 24 |
64 -- 89 |
sensory histidine kinase in two-component regulatory system with CitB |
|
_____________3__________________________25\n_____________|__________________________|\n________5'-CAU______AG__________________AUUUA...UCA-3'\n______________AGAGUU_____UGGUUUU__UUAUUU\n______________|:||||_____|||:|||__|||||:\n______________UUUCAA_____ACCGAAA__AAUAAG\n3'-CGC...GGCGU______GUGCA_______UC______CUCAA...AAG-5'\n_____________|__________________________|\n_____________90_________________________63\n |
12 -- 18 |
72 -- 78 |
-10.9037 kcal/mol |
3.54899 kcal/mol |
0.576654 kcal/mol |
3 25@LB@ | |@LB@ 5'-CAU AG AUUUA...UCA-3'@LB@ AGAGUU UGGUUUU UUAUUU@LB@ |:|||| |||:||| |||||:@LB@ UUUCAA ACCGAAA AAUAAG@LB@3'-CGC...GGCGU GUGCA UC CUCAA...AAG-5'@LB@ | |@LB@ 90 63@LB@@LB@@LB@Energy -6.78 kcal/mol@LB@Hybridization Energy -10.9037 kcal/mol@LB@Unfolding Energy - mRNA 3.54899 kcal/mol@LB@Unfolding Energy - sRNA 0.576654 kcal/mol@LB@@LB@Position - mRNA 4 -- 24@LB@Position - sRNA 64 -- 89@LB@Position Seed - mRNA 12 -- 18@LB@Position Seed - sRNA 72 -- 78@LB@ |
91 |
0.0156 |
0.5385 |
b0881 |
clpS |
-13.09 |
0.030255 |
248 -- 265 |
74 -- 90 |
regulatory protein for ClpA substrate specificity |
|
_____________247________________266\n_____________|__________________|\n5'-GCA...GAAGA___________AC_C___AAAAC...UCA-3'\n______________AAAAGUUCGCG__G_GCU\n______________||||||||:||__|_|||\n______________UUUUCAAGUGC__C_CGA\n3'-CGC...AGGCG___________AA_____AAUCA...AAG-5'\n_____________|__________________|\n_____________91_________________73\n |
252 -- 258 |
80 -- 86 |
-16.9257 kcal/mol |
3.31752 kcal/mol |
0.517587 kcal/mol |
247 266@LB@ | |@LB@5'-GCA...GAAGA AC C AAAAC...UCA-3'@LB@ AAAAGUUCGCG G GCU@LB@ ||||||||:|| | |||@LB@ UUUUCAAGUGC C CGA@LB@3'-CGC...AGGCG AA AAUCA...AAG-5'@LB@ | |@LB@ 91 73@LB@@LB@@LB@Energy -13.09 kcal/mol@LB@Hybridization Energy -16.9257 kcal/mol@LB@Unfolding Energy - mRNA 3.31752 kcal/mol@LB@Unfolding Energy - sRNA 0.517587 kcal/mol@LB@@LB@Position - mRNA 248 -- 265@LB@Position - sRNA 74 -- 90@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 80 -- 86@LB@ |