164 |
0.01824 |
0.3566 |
b1854 |
pykA |
-7.33 |
0.090768 |
1 -- 31 |
25 -- 60 |
pyruvate kinase II |
|
______________1___________________________________32\n______________|___________________________________|\n___________5'-_____GG__CA_____________________A___CGUUU...ACG-3'\n______________GAAGC__GU______AAGAAGCGCU_GAAGGA_UCG\n______________|||:|__|:______|||||||:||_:||::|_|||\n______________CUUUG__CG______UUCUUCGUGA_UUUUUU_AGC\n3'-UUU...CCCUA_____AA__AAUUCG__________A______A___AAUGU...CAA-5'\n_____________|____________________________________|\n_____________61___________________________________24\n |
15 -- 21 |
36 -- 42 |
-23.5606 kcal/mol |
9.95433 kcal/mol |
6.27609 kcal/mol |
1 32@LB@ | |@LB@ 5'- GG CA A CGUUU...ACG-3'@LB@ GAAGC GU AAGAAGCGCU GAAGGA UCG@LB@ |||:| |: |||||||:|| :||::| |||@LB@ CUUUG CG UUCUUCGUGA UUUUUU AGC@LB@3'-UUU...CCCUA AA AAUUCG A A AAUGU...CAA-5'@LB@ | |@LB@ 61 24@LB@@LB@@LB@Energy -7.33 kcal/mol@LB@Hybridization Energy -23.5606 kcal/mol@LB@Unfolding Energy - mRNA 9.95433 kcal/mol@LB@Unfolding Energy - sRNA 6.27609 kcal/mol@LB@@LB@Position - mRNA 1 -- 31@LB@Position - sRNA 25 -- 60@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 36 -- 42@LB@ |
181 |
0.0215 |
0.3768 |
b3843 |
ubiD |
-7.81 |
0.067872 |
2 -- 28 |
14 -- 40 |
3-octaprenyl-4-hydroxybenzoate decarboxylase |
|
_____________1____________________________29\n_____________|____________________________|\n__________5'-C_______CAGUACA___AA_________UUGCA...UGG-3'\n______________GCGCUUG________GU__AUACCAGGA\n______________||:|||:________||__|:|||||||\n______________CGUGAAU________CA__UGUGGUCCU\n3'-UUU...UUCUU_______UUUUUAAG__A__________UUAGA...CAA-5'\n_____________|____________________________|\n_____________41___________________________13\n |
22 -- 28 |
14 -- 20 |
-21.9915 kcal/mol |
4.97788 kcal/mol |
9.20436 kcal/mol |
1 29@LB@ | |@LB@ 5'-C CAGUACA AA UUGCA...UGG-3'@LB@ GCGCUUG GU AUACCAGGA@LB@ ||:|||: || |:|||||||@LB@ CGUGAAU CA UGUGGUCCU@LB@3'-UUU...UUCUU UUUUUAAG A UUAGA...CAA-5'@LB@ | |@LB@ 41 13@LB@@LB@@LB@Energy -7.81 kcal/mol@LB@Hybridization Energy -21.9915 kcal/mol@LB@Unfolding Energy - mRNA 4.97788 kcal/mol@LB@Unfolding Energy - sRNA 9.20436 kcal/mol@LB@@LB@Position - mRNA 2 -- 28@LB@Position - sRNA 14 -- 40@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 14 -- 20@LB@ |
38 |
0.00143 |
0.1212 |
b3315 |
rplV |
-7.95 |
0.062235 |
2 -- 19 |
23 -- 40 |
50S ribosomal subunit protein L22 |
|
_____________1__________________20\n_____________|__________________|\n__________5'-C________UCCCG_____CAACG...UGG-3'\n______________GCACUUGG_____UCGUU\n______________||||||::_____|||||\n______________CGUGAAUU_____AGCAA\n3'-UUU...UUCUU________UUUUA_____UGUGG...CAA-5'\n_____________|__________________|\n_____________41_________________22\n |
3 -- 9 |
33 -- 39 |
-14.4443 kcal/mol |
4.84591 kcal/mol |
1.64885 kcal/mol |
1 20@LB@ | |@LB@ 5'-C UCCCG CAACG...UGG-3'@LB@ GCACUUGG UCGUU@LB@ ||||||:: |||||@LB@ CGUGAAUU AGCAA@LB@3'-UUU...UUCUU UUUUA UGUGG...CAA-5'@LB@ | |@LB@ 41 22@LB@@LB@@LB@Energy -7.95 kcal/mol@LB@Hybridization Energy -14.4443 kcal/mol@LB@Unfolding Energy - mRNA 4.84591 kcal/mol@LB@Unfolding Energy - sRNA 1.64885 kcal/mol@LB@@LB@Position - mRNA 2 -- 19@LB@Position - sRNA 23 -- 40@LB@Position Seed - mRNA 3 -- 9@LB@Position Seed - sRNA 33 -- 39@LB@ |
5 |
2.271e-05 |
0.01463 |
b0476 |
aes |
-9.47 |
0.023317 |
2 -- 45 |
10 -- 53 |
acetyl esterase |
|
_____________1______________________________________________46\n_____________|______________________________________________|\n__________5'-C_____CG_________AUGUUU_____UA_________________UCAUG...CAA-3'\n______________GUUUA___GGGAAGUA______GGAUU__CGUU_UACCGGGAAAUU\n______________|:|||___::||||:|______::|||__||||_:|||:||||||:\n______________CGAAU___UUCUUCGU______UUUAA__GCAA_GUGGUCCUUUAG\n3'-UUU...UUGAA_____UCG________GAAUUU___________U____________ACUAC...CAA-5'\n_____________|______________________________________________|\n_____________54_____________________________________________9\n |
39 -- 45 |
10 -- 16 |
-31.5647 kcal/mol |
8.26599 kcal/mol |
13.8307 kcal/mol |
1 46@LB@ | |@LB@ 5'-C CG AUGUUU UA UCAUG...CAA-3'@LB@ GUUUA GGGAAGUA GGAUU CGUU UACCGGGAAAUU@LB@ |:||| ::||||:| ::||| |||| :|||:||||||:@LB@ CGAAU UUCUUCGU UUUAA GCAA GUGGUCCUUUAG@LB@3'-UUU...UUGAA UCG GAAUUU U ACUAC...CAA-5'@LB@ | |@LB@ 54 9@LB@@LB@@LB@Energy -9.47 kcal/mol@LB@Hybridization Energy -31.5647 kcal/mol@LB@Unfolding Energy - mRNA 8.26599 kcal/mol@LB@Unfolding Energy - sRNA 13.8307 kcal/mol@LB@@LB@Position - mRNA 2 -- 45@LB@Position - sRNA 10 -- 53@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 10 -- 16@LB@ |
165 |
0.01827 |
0.3566 |
b2937 |
speB |
-7.30 |
0.092452 |
5 -- 22 |
25 -- 41 |
agmatinase |
|
_____________4__________________23\n_____________|__________________|\n_______5'-CAAC___UC_____________AGGCA...CAG-3'\n______________AGU__CUUGAAGAGUUCG\n______________||:__|||:||:|:||||\n______________UCG__GAAUUUUUUAAGC\n3'-UUU...GUUCU___U______________AAUGU...CAA-5'\n_____________|__________________|\n_____________42_________________24\n |
16 -- 22 |
25 -- 31 |
-14.9284 kcal/mol |
5.98061 kcal/mol |
1.64839 kcal/mol |
4 23@LB@ | |@LB@ 5'-CAAC UC AGGCA...CAG-3'@LB@ AGU CUUGAAGAGUUCG@LB@ ||: |||:||:|:||||@LB@ UCG GAAUUUUUUAAGC@LB@3'-UUU...GUUCU U AAUGU...CAA-5'@LB@ | |@LB@ 42 24@LB@@LB@@LB@Energy -7.30 kcal/mol@LB@Hybridization Energy -14.9284 kcal/mol@LB@Unfolding Energy - mRNA 5.98061 kcal/mol@LB@Unfolding Energy - sRNA 1.64839 kcal/mol@LB@@LB@Position - mRNA 5 -- 22@LB@Position - sRNA 25 -- 41@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 25 -- 31@LB@ |
154 |
0.01606 |
0.3359 |
b2587 |
kgtP |
-4.55 |
0.394910 |
6 -- 12 |
52 -- 58 |
alpha-ketoglutarate transporter |
|
_____________5_______13\n_____________|_______|\n______5'-UCCCC_______CCACU...UCG-3'\n______________AACUUGC\n______________|||||||\n______________UUGAACG\n3'-UUU...CUACU_______AAUUC...CAA-5'\n_____________|_______|\n_____________59______51\n |
6 -- 12 |
52 -- 58 |
-7.82918 kcal/mol |
0.15004 kcal/mol |
3.13411 kcal/mol |
5 13@LB@ | |@LB@ 5'-UCCCC CCACU...UCG-3'@LB@ AACUUGC@LB@ |||||||@LB@ UUGAACG@LB@3'-UUU...CUACU AAUUC...CAA-5'@LB@ | |@LB@ 59 51@LB@@LB@@LB@Energy -4.55 kcal/mol@LB@Hybridization Energy -7.82918 kcal/mol@LB@Unfolding Energy - mRNA 0.15004 kcal/mol@LB@Unfolding Energy - sRNA 3.13411 kcal/mol@LB@@LB@Position - mRNA 6 -- 12@LB@Position - sRNA 52 -- 58@LB@Position Seed - mRNA 6 -- 12@LB@Position Seed - sRNA 52 -- 58@LB@ |
117 |
0.009786 |
0.2694 |
b1706 |
ydiU |
-6.16 |
0.177349 |
6 -- 27 |
36 -- 55 |
UPF0061 family protein |
|
_____________5______________________28\n_____________|______________________|\n______5'-UGCAA____AUCAUU____________GAUAC...AUA-3'\n______________UUGC______GCGGGAGGCAUU\n______________||||______||::||:|||:|\n______________AACG______CGUUCUUCGUGA\n3'-UUU...CUUUG____AAUU______________AUUUU...CAA-5'\n_____________|______________________|\n_____________56_____________________35\n |
21 -- 27 |
36 -- 42 |
-19.2761 kcal/mol |
6.93839 kcal/mol |
6.17795 kcal/mol |
5 28@LB@ | |@LB@ 5'-UGCAA AUCAUU GAUAC...AUA-3'@LB@ UUGC GCGGGAGGCAUU@LB@ |||| ||::||:|||:|@LB@ AACG CGUUCUUCGUGA@LB@3'-UUU...CUUUG AAUU AUUUU...CAA-5'@LB@ | |@LB@ 56 35@LB@@LB@@LB@Energy -6.16 kcal/mol@LB@Hybridization Energy -19.2761 kcal/mol@LB@Unfolding Energy - mRNA 6.93839 kcal/mol@LB@Unfolding Energy - sRNA 6.17795 kcal/mol@LB@@LB@Position - mRNA 6 -- 27@LB@Position - sRNA 36 -- 55@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 36 -- 42@LB@ |
61 |
0.003184 |
0.1645 |
b4112 |
basS |
-6.79 |
0.124428 |
7 -- 41 |
10 -- 54 |
sensory histidine kinase in two-component regulatory system with BasR |
|
_____________6______________________________________________42\n_____________|______________________________________________|\n_____5'-GGUUAA____CA_______C___C_____________GU_____________CUCUA...UAU-3'\n______________UGCU__AAGCAGG_AGU____________CG__GCAUCGGGAAAUU\n______________||||__|||||:|_||:____________||__:||:|:||||||:\n______________ACGA__UUCGUUC_UCG____________GC__UGUGGUCCUUUAG\n3'-UUU...UUUGA____A________U___UGAAUUUUUUAA__AA_____________ACUAC...CAA-5'\n_____________|______________________________________________|\n_____________55_____________________________________________9\n |
35 -- 41 |
10 -- 16 |
-31.3926 kcal/mol |
10.7631 kcal/mol |
13.8372 kcal/mol |
6 42@LB@ | |@LB@ 5'-GGUUAA CA C C GU CUCUA...UAU-3'@LB@ UGCU AAGCAGG AGU CG GCAUCGGGAAAUU@LB@ |||| |||||:| ||: || :||:|:||||||:@LB@ ACGA UUCGUUC UCG GC UGUGGUCCUUUAG@LB@3'-UUU...UUUGA A U UGAAUUUUUUAA AA ACUAC...CAA-5'@LB@ | |@LB@ 55 9@LB@@LB@@LB@Energy -6.79 kcal/mol@LB@Hybridization Energy -31.3926 kcal/mol@LB@Unfolding Energy - mRNA 10.7631 kcal/mol@LB@Unfolding Energy - sRNA 13.8372 kcal/mol@LB@@LB@Position - mRNA 7 -- 41@LB@Position - sRNA 10 -- 54@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 10 -- 16@LB@ |
192 |
0.02295 |
0.3851 |
b1282 |
yciH |
-4.88 |
0.338940 |
8 -- 32 |
15 -- 33 |
initiation factor function partial mimic SUI1 family |
|
_____________7_________________________33\n_____________|_________________________|\n____5'-UUCGGUC________AAACUG___________CAUUC...UGC-3'\n______________AGGAGUUC______GUUACGCCGGG\n______________|::|:|||______|||||:||:||\n______________UUUUUAAG______CAAUGUGGUCC\n3'-UUU...UGAAU_________________________UUUAG...CAA-5'\n_____________|_________________________|\n_____________34________________________14\n |
9 -- 15 |
26 -- 32 |
-19.9664 kcal/mol |
6.44674 kcal/mol |
8.63649 kcal/mol |
7 33@LB@ | |@LB@ 5'-UUCGGUC AAACUG CAUUC...UGC-3'@LB@ AGGAGUUC GUUACGCCGGG@LB@ |::|:||| |||||:||:||@LB@ UUUUUAAG CAAUGUGGUCC@LB@3'-UUU...UGAAU UUUAG...CAA-5'@LB@ | |@LB@ 34 14@LB@@LB@@LB@Energy -4.88 kcal/mol@LB@Hybridization Energy -19.9664 kcal/mol@LB@Unfolding Energy - mRNA 6.44674 kcal/mol@LB@Unfolding Energy - sRNA 8.63649 kcal/mol@LB@@LB@Position - mRNA 8 -- 32@LB@Position - sRNA 15 -- 33@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 26 -- 32@LB@ |
30 |
0.0008402 |
0.09021 |
b2792 |
yqcC |
-12.92 |
0.001907 |
10 -- 25 |
38 -- 53 |
DUF446 family protein |
|
_____________9________________26\n_____________|________________|\n5'-AUC...GGGUG__G_____________AUAGU...AAU-3'\n______________GU_UGAGCAGGAAGCA\n______________|:_|:||||:||||||\n______________CG_AUUCGUUCUUCGU\n3'-UUU...UUGAA__A_____________GAAUU...CAA-5'\n_____________|________________|\n_____________54_______________37\n |
19 -- 25 |
38 -- 44 |
-21.2799 kcal/mol |
2.27149 kcal/mol |
6.09301 kcal/mol |
9 26@LB@ | |@LB@5'-AUC...GGGUG G AUAGU...AAU-3'@LB@ GU UGAGCAGGAAGCA@LB@ |: |:||||:||||||@LB@ CG AUUCGUUCUUCGU@LB@3'-UUU...UUGAA A GAAUU...CAA-5'@LB@ | |@LB@ 54 37@LB@@LB@@LB@Energy -12.92 kcal/mol@LB@Hybridization Energy -21.2799 kcal/mol@LB@Unfolding Energy - mRNA 2.27149 kcal/mol@LB@Unfolding Energy - sRNA 6.09301 kcal/mol@LB@@LB@Position - mRNA 10 -- 25@LB@Position - sRNA 38 -- 53@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 38 -- 44@LB@ |
103 |
0.00845 |
0.2642 |
b0936 |
ssuA |
-4.91 |
0.333979 |
11 -- 31 |
10 -- 40 |
aliphatic sulfonate ABC transporter periplasmic binding protein |
|
_____________10______________________________32\n_____________|_______________________________|\n5'-AGU...UAAGC_______________________________CUGCA...AUC-3'\n______________GCAC_UGAAA________GC_UCAGGAGAUC\n______________||||_|:|||________:|_:|||||:|||\n______________CGUG_AUUUU________UG_GGUCCUUUAG\n3'-UUU...UUCUU____A_____UUAAGCAA__U__________ACUAC...CAA-5'\n_____________|_______________________________|\n_____________41______________________________9\n |
25 -- 31 |
10 -- 16 |
-20.0893 kcal/mol |
5.95403 kcal/mol |
9.22048 kcal/mol |
10 32@LB@ | |@LB@5'-AGU...UAAGC CUGCA...AUC-3'@LB@ GCAC UGAAA GC UCAGGAGAUC@LB@ |||| |:||| :| :|||||:|||@LB@ CGUG AUUUU UG GGUCCUUUAG@LB@3'-UUU...UUCUU A UUAAGCAA U ACUAC...CAA-5'@LB@ | |@LB@ 41 9@LB@@LB@@LB@Energy -4.91 kcal/mol@LB@Hybridization Energy -20.0893 kcal/mol@LB@Unfolding Energy - mRNA 5.95403 kcal/mol@LB@Unfolding Energy - sRNA 9.22048 kcal/mol@LB@@LB@Position - mRNA 11 -- 31@LB@Position - sRNA 10 -- 40@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 10 -- 16@LB@ |
184 |
0.02168 |
0.3768 |
b4380 |
yjjI |
-6.70 |
0.131310 |
12 -- 49 |
9 -- 40 |
DUF3029 family protein putative glycine radical enzyme |
|
_____________11________________________________________50\n_____________|_________________________________________|\n5'-ACA...ACUCC___ACACAC_______A_____AUCACAAUUA_________ACUUA...UGG-3'\n______________GCA_________UUCG_UACAC__________AGGAAAUCU\n______________|||_________||||_|||||__________|||||||||\n______________CGU_________AAGC_AUGUG__________UCCUUUAGA\n3'-UUU...UUCUU___GAAUUUUUU____A_____G__________________CUACACAA-5'\n_____________|_________________________________________|\n_____________41________________________________________8\n |
43 -- 49 |
9 -- 15 |
-18.7623 kcal/mol |
2.84333 kcal/mol |
9.22063 kcal/mol |
11 50@LB@ | |@LB@5'-ACA...ACUCC ACACAC A AUCACAAUUA ACUUA...UGG-3'@LB@ GCA UUCG UACAC AGGAAAUCU@LB@ ||| |||| ||||| |||||||||@LB@ CGU AAGC AUGUG UCCUUUAGA@LB@3'-UUU...UUCUU GAAUUUUUU A G CUACACAA-5'@LB@ | |@LB@ 41 8@LB@@LB@@LB@Energy -6.70 kcal/mol@LB@Hybridization Energy -18.7623 kcal/mol@LB@Unfolding Energy - mRNA 2.84333 kcal/mol@LB@Unfolding Energy - sRNA 9.22063 kcal/mol@LB@@LB@Position - mRNA 12 -- 49@LB@Position - sRNA 9 -- 40@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 9 -- 15@LB@ |
4 |
1.769e-05 |
0.01424 |
b2105 |
rcnR |
-7.88 |
0.065143 |
12 -- 26 |
36 -- 49 |
transcriptional repressor of rcnA |
|
_____________11______________27\n_____________|_______________|\n5'-UGA...GCACC________U______GGGGA...ACG-3'\n______________AAGUAAGA_GGCGCU\n______________|||:||||_:||:||\n______________UUCGUUCU_UCGUGA\n3'-UUU...ACGAA_______________AUUUU...CAA-5'\n_____________|_______________|\n_____________50______________35\n |
13 -- 19 |
42 -- 48 |
-15.6635 kcal/mol |
1.75127 kcal/mol |
6.03645 kcal/mol |
11 27@LB@ | |@LB@5'-UGA...GCACC U GGGGA...ACG-3'@LB@ AAGUAAGA GGCGCU@LB@ |||:|||| :||:||@LB@ UUCGUUCU UCGUGA@LB@3'-UUU...ACGAA AUUUU...CAA-5'@LB@ | |@LB@ 50 35@LB@@LB@@LB@Energy -7.88 kcal/mol@LB@Hybridization Energy -15.6635 kcal/mol@LB@Unfolding Energy - mRNA 1.75127 kcal/mol@LB@Unfolding Energy - sRNA 6.03645 kcal/mol@LB@@LB@Position - mRNA 12 -- 26@LB@Position - sRNA 36 -- 49@LB@Position Seed - mRNA 13 -- 19@LB@Position Seed - sRNA 42 -- 48@LB@ |
186 |
0.02184 |
0.3768 |
b1256 |
ompW |
-5.92 |
0.201836 |
13 -- 38 |
30 -- 57 |
outer membrane protein W |
|
_____________12___________________________39\n_____________|____________________________|\n5'-GAC...UUAAU______GU______A_____________UUGAU...CUG-3'\n______________AUUUGC___AGCGA_AA_UAUUUAAAAA\n______________|:||||___|||:|_||_:|:|||||||\n______________UGAACG___UCGUU_UU_GUGAAUUUUU\n3'-UUU...UACUU______AAU_____C__C__________UAAGC...CAA-5'\n_____________|____________________________|\n_____________58___________________________29\n |
32 -- 38 |
30 -- 36 |
-16.1426 kcal/mol |
3.99952 kcal/mol |
6.22352 kcal/mol |
12 39@LB@ | |@LB@5'-GAC...UUAAU GU A UUGAU...CUG-3'@LB@ AUUUGC AGCGA AA UAUUUAAAAA@LB@ |:|||| |||:| || :|:|||||||@LB@ UGAACG UCGUU UU GUGAAUUUUU@LB@3'-UUU...UACUU AAU C C UAAGC...CAA-5'@LB@ | |@LB@ 58 29@LB@@LB@@LB@Energy -5.92 kcal/mol@LB@Hybridization Energy -16.1426 kcal/mol@LB@Unfolding Energy - mRNA 3.99952 kcal/mol@LB@Unfolding Energy - sRNA 6.22352 kcal/mol@LB@@LB@Position - mRNA 13 -- 38@LB@Position - sRNA 30 -- 57@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 30 -- 36@LB@ |
55 |
0.002761 |
0.1597 |
b0238 |
gpt |
-5.76 |
0.219641 |
15 -- 42 |
30 -- 59 |
xanthine phosphoribosyltransferase; xanthine-guanine phosphoribosyltransferase |
|
_____________14_____________________________43\n_____________|______________________________|\n5'-AUG...ACACA____AG____________UAUG________UACCA...UUG-3'\n______________AGAC__GCUU__GCGAGA____UUUGAGAA\n______________|:||__||||__||:|||____:||:|:||\n______________UUUG__CGAA__CGUUCU____GAAUUUUU\n3'-UUU...CCUAC____AA____UU______UCGU________UAAGC...CAA-5'\n_____________|______________________________|\n_____________60_____________________________29\n |
36 -- 42 |
30 -- 36 |
-17.3334 kcal/mol |
5.3037 kcal/mol |
6.27042 kcal/mol |
14 43@LB@ | |@LB@5'-AUG...ACACA AG UAUG UACCA...UUG-3'@LB@ AGAC GCUU GCGAGA UUUGAGAA@LB@ |:|| |||| ||:||| :||:|:||@LB@ UUUG CGAA CGUUCU GAAUUUUU@LB@3'-UUU...CCUAC AA UU UCGU UAAGC...CAA-5'@LB@ | |@LB@ 60 29@LB@@LB@@LB@Energy -5.76 kcal/mol@LB@Hybridization Energy -17.3334 kcal/mol@LB@Unfolding Energy - mRNA 5.3037 kcal/mol@LB@Unfolding Energy - sRNA 6.27042 kcal/mol@LB@@LB@Position - mRNA 15 -- 42@LB@Position - sRNA 30 -- 59@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 30 -- 36@LB@ |
193 |
0.0233 |
0.3864 |
b1563 |
relE |
-9.36 |
0.025073 |
16 -- 27 |
29 -- 40 |
Qin prophage; toxin of the RelE-RelB toxin-antitoxin system |
|
_____________15___________28\n_____________|____________|\n5'-GCG...ACGCC____________AUGGG...UAC-3'\n______________GCGCUUGAAAAA\n______________||:|||:|||||\n______________CGUGAAUUUUUU\n3'-UUU...UUCUU____________AAGCA...CAA-5'\n_____________|____________|\n_____________41___________28\n |
21 -- 27 |
29 -- 35 |
-12.3855 kcal/mol |
1.40487 kcal/mol |
1.62106 kcal/mol |
15 28@LB@ | |@LB@5'-GCG...ACGCC AUGGG...UAC-3'@LB@ GCGCUUGAAAAA@LB@ ||:|||:|||||@LB@ CGUGAAUUUUUU@LB@3'-UUU...UUCUU AAGCA...CAA-5'@LB@ | |@LB@ 41 28@LB@@LB@@LB@Energy -9.36 kcal/mol@LB@Hybridization Energy -12.3855 kcal/mol@LB@Unfolding Energy - mRNA 1.40487 kcal/mol@LB@Unfolding Energy - sRNA 1.62106 kcal/mol@LB@@LB@Position - mRNA 16 -- 27@LB@Position - sRNA 29 -- 40@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 29 -- 35@LB@ |
162 |
0.01764 |
0.3508 |
b0654 |
gltJ |
-6.81 |
0.123116 |
18 -- 45 |
15 -- 42 |
glutamate/aspartate ABC transporter permease |
|
_____________17___________________________46\n_____________|____________________________|\n5'-CAA...UGACA_______GAACU____ACAAGA______GGCGG...UCG-3'\n______________AGGCACU_____AAUU______ACCAGG\n______________|:|||||_____||||______||||||\n______________UUCGUGA_____UUAA______UGGUCC\n3'-UUU...CGUUC_______AUUUU____GCAAUG______UUUAG...CAA-5'\n_____________|____________________________|\n_____________43___________________________14\n |
18 -- 24 |
36 -- 42 |
-19.3193 kcal/mol |
3.30421 kcal/mol |
9.20431 kcal/mol |
17 46@LB@ | |@LB@5'-CAA...UGACA GAACU ACAAGA GGCGG...UCG-3'@LB@ AGGCACU AAUU ACCAGG@LB@ |:||||| |||| ||||||@LB@ UUCGUGA UUAA UGGUCC@LB@3'-UUU...CGUUC AUUUU GCAAUG UUUAG...CAA-5'@LB@ | |@LB@ 43 14@LB@@LB@@LB@Energy -6.81 kcal/mol@LB@Hybridization Energy -19.3193 kcal/mol@LB@Unfolding Energy - mRNA 3.30421 kcal/mol@LB@Unfolding Energy - sRNA 9.20431 kcal/mol@LB@@LB@Position - mRNA 18 -- 45@LB@Position - sRNA 15 -- 42@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 36 -- 42@LB@ |
51 |
0.002326 |
0.1469 |
b2780 |
pyrG |
-6.37 |
0.158020 |
19 -- 28 |
33 -- 42 |
CTP synthetase |
|
_____________18_________29\n_____________|__________|\n5'-UGU...AUGAC__________UUUGC...GCC-3'\n______________AAGCGCUUGA\n______________||||:|||:|\n______________UUCGUGAAUU\n3'-UUU...CGUUC__________UUUUA...CAA-5'\n_____________|__________|\n_____________43_________32\n |
22 -- 28 |
33 -- 39 |
-10.9983 kcal/mol |
3.00927 kcal/mol |
1.61944 kcal/mol |
18 29@LB@ | |@LB@5'-UGU...AUGAC UUUGC...GCC-3'@LB@ AAGCGCUUGA@LB@ ||||:|||:|@LB@ UUCGUGAAUU@LB@3'-UUU...CGUUC UUUUA...CAA-5'@LB@ | |@LB@ 43 32@LB@@LB@@LB@Energy -6.37 kcal/mol@LB@Hybridization Energy -10.9983 kcal/mol@LB@Unfolding Energy - mRNA 3.00927 kcal/mol@LB@Unfolding Energy - sRNA 1.61944 kcal/mol@LB@@LB@Position - mRNA 19 -- 28@LB@Position - sRNA 33 -- 42@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 33 -- 39@LB@ |
83 |
0.005546 |
0.2146 |
b0221 |
fadE |
-11.24 |
0.006780 |
20 -- 32 |
37 -- 49 |
acyl coenzyme A dehydrogenase |
|
_____________19____________33\n_____________|_____________|\n5'-GUG...GCCAA_____________GGGCA...GGA-3'\n______________AAGCGAGAAGUAC\n______________||||:|||||:||\n______________UUCGUUCUUCGUG\n3'-UUU...ACGAA_____________AAUUU...CAA-5'\n_____________|_____________|\n_____________50____________36\n |
26 -- 32 |
37 -- 43 |
-19.9972 kcal/mol |
2.7283 kcal/mol |
6.03369 kcal/mol |
19 33@LB@ | |@LB@5'-GUG...GCCAA GGGCA...GGA-3'@LB@ AAGCGAGAAGUAC@LB@ ||||:|||||:||@LB@ UUCGUUCUUCGUG@LB@3'-UUU...ACGAA AAUUU...CAA-5'@LB@ | |@LB@ 50 36@LB@@LB@@LB@Energy -11.24 kcal/mol@LB@Hybridization Energy -19.9972 kcal/mol@LB@Unfolding Energy - mRNA 2.7283 kcal/mol@LB@Unfolding Energy - sRNA 6.03369 kcal/mol@LB@@LB@Position - mRNA 20 -- 32@LB@Position - sRNA 37 -- 49@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 37 -- 43@LB@ |
195 |
0.02349 |
0.3864 |
b3982 |
nusG |
-7.66 |
0.074558 |
21 -- 55 |
24 -- 55 |
transcription termination factor |
|
_____________20__________________________________56\n_____________|___________________________________|\n5'-GAC...UACCG______UU__CCGU_______GUACC_____C___AAGGU...ACA-3'\n______________UUGCUU__GC____GAAGCGC_____GAAGU_CGU\n______________||||||__||____|||||:|_____:||:|_|||\n______________AACGAA__CG____CUUCGUG_____UUUUA_GCA\n3'-UUU...CUUUG______UU__UU_________AAUU______A___AUGUG...CAA-5'\n_____________|___________________________________|\n_____________56__________________________________23\n |
35 -- 41 |
37 -- 43 |
-23.8738 kcal/mol |
9.94572 kcal/mol |
6.27216 kcal/mol |
20 56@LB@ | |@LB@5'-GAC...UACCG UU CCGU GUACC C AAGGU...ACA-3'@LB@ UUGCUU GC GAAGCGC GAAGU CGU@LB@ |||||| || |||||:| :||:| |||@LB@ AACGAA CG CUUCGUG UUUUA GCA@LB@3'-UUU...CUUUG UU UU AAUU A AUGUG...CAA-5'@LB@ | |@LB@ 56 23@LB@@LB@@LB@Energy -7.66 kcal/mol@LB@Hybridization Energy -23.8738 kcal/mol@LB@Unfolding Energy - mRNA 9.94572 kcal/mol@LB@Unfolding Energy - sRNA 6.27216 kcal/mol@LB@@LB@Position - mRNA 21 -- 55@LB@Position - sRNA 24 -- 55@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 37 -- 43@LB@ |
127 |
0.01193 |
0.3024 |
b3625 |
waaY |
-10.33 |
0.012897 |
24 -- 38 |
26 -- 41 |
lipopolysaccharide core biosynthesis protein |
|
_____________23_______________39\n_____________|________________|\n5'-CCA...AAAAU________________CCCCU...UAA-3'\n______________AGC_UUUAGAAAAUUC\n______________|||_:|||:|||||||\n______________UCG_GAAUUUUUUAAG\n3'-UUU...GUUCU___U____________CAAUG...CAA-5'\n_____________|________________|\n_____________42_______________25\n |
32 -- 38 |
26 -- 32 |
-12.5754 kcal/mol |
0.594404 kcal/mol |
1.64829 kcal/mol |
23 39@LB@ | |@LB@5'-CCA...AAAAU CCCCU...UAA-3'@LB@ AGC UUUAGAAAAUUC@LB@ ||| :|||:|||||||@LB@ UCG GAAUUUUUUAAG@LB@3'-UUU...GUUCU U CAAUG...CAA-5'@LB@ | |@LB@ 42 25@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -12.5754 kcal/mol@LB@Unfolding Energy - mRNA 0.594404 kcal/mol@LB@Unfolding Energy - sRNA 1.64829 kcal/mol@LB@@LB@Position - mRNA 24 -- 38@LB@Position - sRNA 26 -- 41@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 26 -- 32@LB@ |
21 |
0.000535 |
0.08206 |
b1639 |
mliC |
-10.27 |
0.013452 |
27 -- 40 |
8 -- 21 |
inhibitor of c-type lysozyme membrane-bound; putative lipoprotein |
|
_____________26_____________41\n_____________|______________|\n5'-GCU...GGGAU______________CCUUC...UGG-3'\n______________UACCAGGAAAUCUG\n______________:|||||||||||||\n______________GUGGUCCUUUAGAC\n3'-UUU...GCAAU______________UACACAA-5'\n_____________|______________|\n_____________22_____________7\n |
32 -- 38 |
10 -- 16 |
-22.0821 kcal/mol |
4.25106 kcal/mol |
7.55865 kcal/mol |
26 41@LB@ | |@LB@5'-GCU...GGGAU CCUUC...UGG-3'@LB@ UACCAGGAAAUCUG@LB@ :|||||||||||||@LB@ GUGGUCCUUUAGAC@LB@3'-UUU...GCAAU UACACAA-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -10.27 kcal/mol@LB@Hybridization Energy -22.0821 kcal/mol@LB@Unfolding Energy - mRNA 4.25106 kcal/mol@LB@Unfolding Energy - sRNA 7.55865 kcal/mol@LB@@LB@Position - mRNA 27 -- 40@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 10 -- 16@LB@ |
89 |
0.006302 |
0.2266 |
b3208 |
mtgA |
-4.90 |
0.336213 |
28 -- 47 |
28 -- 47 |
biosynthetic peptidoglycan transglycosylase |
|
_____________27____________________48\n_____________|_____________________|\n5'-UUG...AUACC____________GG_______GGGCG...UGU-3'\n______________GC_AGAAGUGCU__AAGAGAU\n______________||_|||||::||__||:|:||\n______________CG_UCUUCGUGA__UUUUUUA\n3'-UUU...GAAUU__U_________A________AGCAA...CAA-5'\n_____________|_____________________|\n_____________48____________________27\n |
32 -- 38 |
36 -- 42 |
-15.6239 kcal/mol |
4.50128 kcal/mol |
6.22212 kcal/mol |
27 48@LB@ | |@LB@5'-UUG...AUACC GG GGGCG...UGU-3'@LB@ GC AGAAGUGCU AAGAGAU@LB@ || |||||::|| ||:|:||@LB@ CG UCUUCGUGA UUUUUUA@LB@3'-UUU...GAAUU U A AGCAA...CAA-5'@LB@ | |@LB@ 48 27@LB@@LB@@LB@Energy -4.90 kcal/mol@LB@Hybridization Energy -15.6239 kcal/mol@LB@Unfolding Energy - mRNA 4.50128 kcal/mol@LB@Unfolding Energy - sRNA 6.22212 kcal/mol@LB@@LB@Position - mRNA 28 -- 47@LB@Position - sRNA 28 -- 47@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 36 -- 42@LB@ |
3 |
4.385e-06 |
0.004708 |
b3749 |
rbsA |
-11.98 |
0.003917 |
29 -- 86 |
17 -- 57 |
D-ribose ABC transporter ATPase |
|
_____________28_________________________________________________________87\n_____________|__________________________________________________________|\n5'-UAA...UGCUC___CAC________GCUGCAAAAACACCAG____A___CAUU________________CGCAU...UGG-3'\n______________ACU___CUUGAGCA________________GGAA_UAC____GAAAUUCGUUACACCA\n______________|||___|||:||||________________:|||_:||____:|||||||||||||||\n______________UGA___GAAUUCGU________________UCUU_GUG____UUUUAAGCAAUGUGGU\n3'-UUU...UACUU___AC_____________________________C___AAUU________________CCUUU...CAA-5'\n_____________|__________________________________________________________|\n_____________58_________________________________________________________16\n |
80 -- 86 |
17 -- 23 |
-33.7219 kcal/mol |
7.92362 kcal/mol |
13.8209 kcal/mol |
28 87@LB@ | |@LB@5'-UAA...UGCUC CAC GCUGCAAAAACACCAG A CAUU CGCAU...UGG-3'@LB@ ACU CUUGAGCA GGAA UAC GAAAUUCGUUACACCA@LB@ ||| |||:|||| :||| :|| :|||||||||||||||@LB@ UGA GAAUUCGU UCUU GUG UUUUAAGCAAUGUGGU@LB@3'-UUU...UACUU AC C AAUU CCUUU...CAA-5'@LB@ | |@LB@ 58 16@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -33.7219 kcal/mol@LB@Unfolding Energy - mRNA 7.92362 kcal/mol@LB@Unfolding Energy - sRNA 13.8209 kcal/mol@LB@@LB@Position - mRNA 29 -- 86@LB@Position - sRNA 17 -- 57@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 17 -- 23@LB@ |
182 |
0.02157 |
0.3768 |
b0887 |
cydD |
-7.84 |
0.066788 |
30 -- 38 |
33 -- 41 |
glutathione/cysteine ABC transporter export permease/ATPase |
|
_____________29________39\n_____________|_________|\n5'-AUU...AUGGC_________UGCGG...UGA-3'\n______________AGCACUUGA\n______________|||||||:|\n______________UCGUGAAUU\n3'-UUU...GUUCU_________UUUUA...CAA-5'\n_____________|_________|\n_____________42________32\n |
32 -- 38 |
33 -- 39 |
-10.6359 kcal/mol |
1.18174 kcal/mol |
1.6188 kcal/mol |
29 39@LB@ | |@LB@5'-AUU...AUGGC UGCGG...UGA-3'@LB@ AGCACUUGA@LB@ |||||||:|@LB@ UCGUGAAUU@LB@3'-UUU...GUUCU UUUUA...CAA-5'@LB@ | |@LB@ 42 32@LB@@LB@@LB@Energy -7.84 kcal/mol@LB@Hybridization Energy -10.6359 kcal/mol@LB@Unfolding Energy - mRNA 1.18174 kcal/mol@LB@Unfolding Energy - sRNA 1.6188 kcal/mol@LB@@LB@Position - mRNA 30 -- 38@LB@Position - sRNA 33 -- 41@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 33 -- 39@LB@ |
74 |
0.004124 |
0.1795 |
b2599 |
pheA |
-8.54 |
0.042758 |
34 -- 48 |
29 -- 42 |
chorismate mutase and prephenate dehydratase P-protein |
|
_____________33______________49\n_____________|_______________|\n5'-UGA...UACUA___U___________ACAAA...UCG-3'\n______________AAG_CACUUAAGGAA\n______________|||_|||||||::||\n______________UUC_GUGAAUUUUUU\n3'-UUU...CGUUC_______________AAGCA...CAA-5'\n_____________|_______________|\n_____________43______________28\n |
42 -- 48 |
29 -- 35 |
-11.0993 kcal/mol |
0.931405 kcal/mol |
1.62369 kcal/mol |
33 49@LB@ | |@LB@5'-UGA...UACUA U ACAAA...UCG-3'@LB@ AAG CACUUAAGGAA@LB@ ||| |||||||::||@LB@ UUC GUGAAUUUUUU@LB@3'-UUU...CGUUC AAGCA...CAA-5'@LB@ | |@LB@ 43 28@LB@@LB@@LB@Energy -8.54 kcal/mol@LB@Hybridization Energy -11.0993 kcal/mol@LB@Unfolding Energy - mRNA 0.931405 kcal/mol@LB@Unfolding Energy - sRNA 1.62369 kcal/mol@LB@@LB@Position - mRNA 34 -- 48@LB@Position - sRNA 29 -- 42@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 29 -- 35@LB@ |
94 |
0.006975 |
0.2379 |
b1284 |
yciT |
-8.66 |
0.039674 |
34 -- 64 |
15 -- 42 |
global regulator of transcription; DeoR family |
|
_____________33_______________________________65\n_____________|________________________________|\n5'-GCA...AUCUC___A________GCA___C_____________UUGCU...CCA-3'\n______________GAG_UACUUAAA___GAA_UC_UUGCGCCAGG\n______________:||_:|||||||___:||_||_||:|:|||||\n______________UUC_GUGAAUUU___UUU_AG_AAUGUGGUCC\n3'-UUU...CGUUC__________________A__C__________UUUAG...CAA-5'\n_____________|________________________________|\n_____________43_______________________________14\n |
58 -- 64 |
15 -- 21 |
-23.4161 kcal/mol |
5.55126 kcal/mol |
9.20431 kcal/mol |
33 65@LB@ | |@LB@5'-GCA...AUCUC A GCA C UUGCU...CCA-3'@LB@ GAG UACUUAAA GAA UC UUGCGCCAGG@LB@ :|| :||||||| :|| || ||:|:|||||@LB@ UUC GUGAAUUU UUU AG AAUGUGGUCC@LB@3'-UUU...CGUUC A C UUUAG...CAA-5'@LB@ | |@LB@ 43 14@LB@@LB@@LB@Energy -8.66 kcal/mol@LB@Hybridization Energy -23.4161 kcal/mol@LB@Unfolding Energy - mRNA 5.55126 kcal/mol@LB@Unfolding Energy - sRNA 9.20431 kcal/mol@LB@@LB@Position - mRNA 34 -- 64@LB@Position - sRNA 15 -- 42@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 15 -- 21@LB@ |
124 |
0.01089 |
0.2829 |
b0186 |
ldcC |
-10.51 |
0.011388 |
34 -- 66 |
24 -- 58 |
lysine decarboxylase 2 constitutive |
|
_____________33___________________________________67\n_____________|____________________________________|\n5'-AAA...AUCUC___G__________CU____________________CGUUA...UUA-3'\n______________GAC_UG_UUAAGCA__GAAG_AUUUAAAAAA_UCGU\n______________:||_||_|||||||__||||_|:||||||||_||||\n______________UUG_AC_AAUUCGU__CUUC_UGAAUUUUUU_AGCA\n3'-UUU...CUACU___A__G_______U_____G__________A____AUGUG...CAA-5'\n_____________|____________________________________|\n_____________59___________________________________23\n |
53 -- 59 |
32 -- 38 |
-24.2219 kcal/mol |
7.43557 kcal/mol |
6.27608 kcal/mol |
33 67@LB@ | |@LB@5'-AAA...AUCUC G CU CGUUA...UUA-3'@LB@ GAC UG UUAAGCA GAAG AUUUAAAAAA UCGU@LB@ :|| || ||||||| |||| |:|||||||| ||||@LB@ UUG AC AAUUCGU CUUC UGAAUUUUUU AGCA@LB@3'-UUU...CUACU A G U G A AUGUG...CAA-5'@LB@ | |@LB@ 59 23@LB@@LB@@LB@Energy -10.51 kcal/mol@LB@Hybridization Energy -24.2219 kcal/mol@LB@Unfolding Energy - mRNA 7.43557 kcal/mol@LB@Unfolding Energy - sRNA 6.27608 kcal/mol@LB@@LB@Position - mRNA 34 -- 66@LB@Position - sRNA 24 -- 58@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 32 -- 38@LB@ |
185 |
0.02171 |
0.3768 |
b0059 |
rapA |
-7.86 |
0.065955 |
35 -- 74 |
2 -- 42 |
RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated ATP-dependent RNA translocase |
|
_____________34___________________________________________75\n_____________|____________________________________________|\n5'-GCU...AUUUU_____AAAA__________CCAG______U___________C__GACGA...UUU-3'\n______________GAGCA____AAAGAGUUCG____AUACCA_____UUUGAUG_GU\n______________:||||____|||:|:||||____|:||||_____|:|||||_||\n______________UUCGU____UUUUUUAAGC____UGUGGU_____AGACUAC_CA\n3'-UUU...CGUUC_____GAA___________AA________CCUUU_______A__A-5'\n_____________|____________________________________________|\n_____________43___________________________________________1\n |
47 -- 53 |
25 -- 31 |
-26.2778 kcal/mol |
9.20057 kcal/mol |
9.22149 kcal/mol |
34 75@LB@ | |@LB@5'-GCU...AUUUU AAAA CCAG U C GACGA...UUU-3'@LB@ GAGCA AAAGAGUUCG AUACCA UUUGAUG GU@LB@ :|||| |||:|:|||| |:|||| |:||||| ||@LB@ UUCGU UUUUUUAAGC UGUGGU AGACUAC CA@LB@3'-UUU...CGUUC GAA AA CCUUU A A-5'@LB@ | |@LB@ 43 1@LB@@LB@@LB@Energy -7.86 kcal/mol@LB@Hybridization Energy -26.2778 kcal/mol@LB@Unfolding Energy - mRNA 9.20057 kcal/mol@LB@Unfolding Energy - sRNA 9.22149 kcal/mol@LB@@LB@Position - mRNA 35 -- 74@LB@Position - sRNA 2 -- 42@LB@Position Seed - mRNA 47 -- 53@LB@Position Seed - sRNA 25 -- 31@LB@ |
19 |
0.0004926 |
0.08107 |
b0820 |
ybiT |
-10.62 |
0.010514 |
37 -- 84 |
2 -- 44 |
ABC-F family putative regulatory ATPase |
|
_____________36________________________________________________85\n_____________|_________________________________________________|\n5'-CCU...GUAUU________A___U_______A__CCA__U_A___U______A_______ACGAA...UUG-3'\n______________GGAAGCGC_UUA__AAGUUC_UU___GC_C_CAG_GAAAUC_GAUGUGU\n______________:|||||:|_|||__||:|||_||___:|_|_|||_||||||_|||||||\n______________UCUUCGUG_AAU__UUUAAG_AA___UG_G_GUC_CUUUAG_CUACACA\n3'-UUU...UUCGU____________UU______C_______U____________A_______A-5'\n_____________|_________________________________________________|\n_____________45________________________________________________1\n |
38 -- 44 |
37 -- 43 |
-34.6599 kcal/mol |
11.843 kcal/mol |
12.1934 kcal/mol |
36 85@LB@ | |@LB@5'-CCU...GUAUU A U A CCA U A U A ACGAA...UUG-3'@LB@ GGAAGCGC UUA AAGUUC UU GC C CAG GAAAUC GAUGUGU@LB@ :|||||:| ||| ||:||| || :| | ||| |||||| |||||||@LB@ UCUUCGUG AAU UUUAAG AA UG G GUC CUUUAG CUACACA@LB@3'-UUU...UUCGU UU C U A A-5'@LB@ | |@LB@ 45 1@LB@@LB@@LB@Energy -10.62 kcal/mol@LB@Hybridization Energy -34.6599 kcal/mol@LB@Unfolding Energy - mRNA 11.843 kcal/mol@LB@Unfolding Energy - sRNA 12.1934 kcal/mol@LB@@LB@Position - mRNA 37 -- 84@LB@Position - sRNA 2 -- 44@LB@Position Seed - mRNA 38 -- 44@LB@Position Seed - sRNA 37 -- 43@LB@ |
92 |
0.006692 |
0.2343 |
b2421 |
cysM |
-10.79 |
0.009324 |
40 -- 63 |
37 -- 60 |
cysteine synthase B (O-acetylserine sulfhydrolase B) |
|
_____________39_______________________64\n_____________|________________________|\n5'-GCU...GAUGA__________CUC___CA______CUGAU...GCA-3'\n______________GGAACUUGCU___GCA__AAGCGC\n______________|:||||||||___|||__||||:|\n______________CUUUGAACGA___CGU__UUCGUG\n3'-UUU...CCCUA__________AUU___UC______AAUUU...CAA-5'\n_____________|________________________|\n_____________61_______________________36\n |
43 -- 49 |
51 -- 57 |
-24.0401 kcal/mol |
7.00094 kcal/mol |
6.24651 kcal/mol |
39 64@LB@ | |@LB@5'-GCU...GAUGA CUC CA CUGAU...GCA-3'@LB@ GGAACUUGCU GCA AAGCGC@LB@ |:|||||||| ||| ||||:|@LB@ CUUUGAACGA CGU UUCGUG@LB@3'-UUU...CCCUA AUU UC AAUUU...CAA-5'@LB@ | |@LB@ 61 36@LB@@LB@@LB@Energy -10.79 kcal/mol@LB@Hybridization Energy -24.0401 kcal/mol@LB@Unfolding Energy - mRNA 7.00094 kcal/mol@LB@Unfolding Energy - sRNA 6.24651 kcal/mol@LB@@LB@Position - mRNA 40 -- 63@LB@Position - sRNA 37 -- 60@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 51 -- 57@LB@ |
102 |
0.008217 |
0.2595 |
b4220 |
tamA |
-7.38 |
0.088103 |
40 -- 47 |
39 -- 46 |
translocation and assembly module for autotransporter export outer membrane subunit |
|
_____________39_______48\n_____________|________|\n5'-CGC...UGUAA________GUAUU...GAC-3'\n______________CAAGAGGC\n______________|||||:||\n______________GUUCUUCG\n3'-UUU...AAUUC________UGAAU...CAA-5'\n_____________|________|\n_____________47_______38\n |
41 -- 47 |
39 -- 45 |
-10.989 kcal/mol |
0.983473 kcal/mol |
2.62555 kcal/mol |
39 48@LB@ | |@LB@5'-CGC...UGUAA GUAUU...GAC-3'@LB@ CAAGAGGC@LB@ |||||:||@LB@ GUUCUUCG@LB@3'-UUU...AAUUC UGAAU...CAA-5'@LB@ | |@LB@ 47 38@LB@@LB@@LB@Energy -7.38 kcal/mol@LB@Hybridization Energy -10.989 kcal/mol@LB@Unfolding Energy - mRNA 0.983473 kcal/mol@LB@Unfolding Energy - sRNA 2.62555 kcal/mol@LB@@LB@Position - mRNA 40 -- 47@LB@Position - sRNA 39 -- 46@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 39 -- 45@LB@ |
98 |
0.007325 |
0.239 |
b4171 |
miaA |
-8.40 |
0.046782 |
42 -- 58 |
5 -- 24 |
delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase |
|
_____________41___________________59\n_____________|____________________|\n5'-GAA...GUGGA____________________AGCGA...UUU-3'\n______________UUGCAC___GAAAUCUGAUG\n______________||:|||___|||||||||||\n______________AAUGUG___CUUUAGACUAC\n3'-UUU...UAAGC______GUC___________ACAA-5'\n_____________|____________________|\n_____________25___________________4\n |
52 -- 58 |
5 -- 11 |
-19.996 kcal/mol |
4.00751 kcal/mol |
7.58501 kcal/mol |
41 59@LB@ | |@LB@5'-GAA...GUGGA AGCGA...UUU-3'@LB@ UUGCAC GAAAUCUGAUG@LB@ ||:||| |||||||||||@LB@ AAUGUG CUUUAGACUAC@LB@3'-UUU...UAAGC GUC ACAA-5'@LB@ | |@LB@ 25 4@LB@@LB@@LB@Energy -8.40 kcal/mol@LB@Hybridization Energy -19.996 kcal/mol@LB@Unfolding Energy - mRNA 4.00751 kcal/mol@LB@Unfolding Energy - sRNA 7.58501 kcal/mol@LB@@LB@Position - mRNA 42 -- 58@LB@Position - sRNA 5 -- 24@LB@Position Seed - mRNA 52 -- 58@LB@Position Seed - sRNA 5 -- 11@LB@ |
120 |
0.01039 |
0.2788 |
b2314 |
dedD |
-6.27 |
0.167184 |
42 -- 54 |
45 -- 58 |
membrane-anchored periplasmic protein involved in septation |
|
_____________41_____________55\n_____________|______________|\n5'-UUG...AGAAC______________UUUGG...AUU-3'\n______________AAC_UGCUUGAGCA\n______________|||_|||||:||||\n______________UUG_ACGAAUUCGU\n3'-UUU...CUACU___A__________UCUUC...CAA-5'\n_____________|______________|\n_____________59_____________44\n |
47 -- 53 |
46 -- 52 |
-15.7533 kcal/mol |
3.46622 kcal/mol |
6.01947 kcal/mol |
41 55@LB@ | |@LB@5'-UUG...AGAAC UUUGG...AUU-3'@LB@ AAC UGCUUGAGCA@LB@ ||| |||||:||||@LB@ UUG ACGAAUUCGU@LB@3'-UUU...CUACU A UCUUC...CAA-5'@LB@ | |@LB@ 59 44@LB@@LB@@LB@Energy -6.27 kcal/mol@LB@Hybridization Energy -15.7533 kcal/mol@LB@Unfolding Energy - mRNA 3.46622 kcal/mol@LB@Unfolding Energy - sRNA 6.01947 kcal/mol@LB@@LB@Position - mRNA 42 -- 54@LB@Position - sRNA 45 -- 58@LB@Position Seed - mRNA 47 -- 53@LB@Position Seed - sRNA 46 -- 52@LB@ |
108 |
0.009338 |
0.2693 |
b0639 |
nadD |
-9.48 |
0.023112 |
42 -- 61 |
34 -- 53 |
nicotinic acid mononucleotide adenylyltransferase NAD(P)-dependent |
|
_____________41___________________62\n_____________|____________________|\n5'-AUG...AAAUC________C___C___G___CGUCA...CGC-3'\n______________GCUUAAGU_AGA_GCA_UUA\n______________|||||||:_|||_|||_|||\n______________CGAAUUCG_UCU_CGU_AAU\n3'-UUU...UUGAA________U___U___G___UUUUU...CAA-5'\n_____________|____________________|\n_____________54___________________33\n |
42 -- 48 |
47 -- 53 |
-20.1483 kcal/mol |
4.55179 kcal/mol |
6.11529 kcal/mol |
41 62@LB@ | |@LB@5'-AUG...AAAUC C C G CGUCA...CGC-3'@LB@ GCUUAAGU AGA GCA UUA@LB@ |||||||: ||| ||| |||@LB@ CGAAUUCG UCU CGU AAU@LB@3'-UUU...UUGAA U U G UUUUU...CAA-5'@LB@ | |@LB@ 54 33@LB@@LB@@LB@Energy -9.48 kcal/mol@LB@Hybridization Energy -20.1483 kcal/mol@LB@Unfolding Energy - mRNA 4.55179 kcal/mol@LB@Unfolding Energy - sRNA 6.11529 kcal/mol@LB@@LB@Position - mRNA 42 -- 61@LB@Position - sRNA 34 -- 53@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 47 -- 53@LB@ |
33 |
0.001071 |
0.1045 |
b2058 |
wcaB |
-10.41 |
0.012241 |
46 -- 64 |
25 -- 42 |
putative acyl transferase |
|
_____________45__________________65\n_____________|___________________|\n5'-ACC...ACCGC______AA___C_______ACCGC...AGA-3'\n______________AAGCAC__AGA_AAAUUCG\n______________||||||__|:|_|||||||\n______________UUCGUG__UUU_UUUAAGC\n3'-UUU...CGUUC______AA___________AAUGU...CAA-5'\n_____________|___________________|\n_____________43__________________24\n |
58 -- 64 |
25 -- 31 |
-12.8013 kcal/mol |
0.745291 kcal/mol |
1.64855 kcal/mol |
45 65@LB@ | |@LB@5'-ACC...ACCGC AA C ACCGC...AGA-3'@LB@ AAGCAC AGA AAAUUCG@LB@ |||||| |:| |||||||@LB@ UUCGUG UUU UUUAAGC@LB@3'-UUU...CGUUC AA AAUGU...CAA-5'@LB@ | |@LB@ 43 24@LB@@LB@@LB@Energy -10.41 kcal/mol@LB@Hybridization Energy -12.8013 kcal/mol@LB@Unfolding Energy - mRNA 0.745291 kcal/mol@LB@Unfolding Energy - sRNA 1.64855 kcal/mol@LB@@LB@Position - mRNA 46 -- 64@LB@Position - sRNA 25 -- 42@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 25 -- 31@LB@ |
119 |
0.01022 |
0.2766 |
b0123 |
cueO |
-7.29 |
0.093095 |
47 -- 59 |
29 -- 41 |
multicopper oxidase (laccase) |
|
_____________46____________60\n_____________|_____________|\n5'-CUG...UACCA__G__________GAUAA...CGU-3'\n______________GG_GCUUAAAGAA\n______________:|_:||||||:||\n______________UC_UGAAUUUUUU\n3'-UUU...GUUCU__G__________AAGCA...CAA-5'\n_____________|_____________|\n_____________42____________28\n |
53 -- 59 |
29 -- 35 |
-11.0144 kcal/mol |
2.10364 kcal/mol |
1.62306 kcal/mol |
46 60@LB@ | |@LB@5'-CUG...UACCA G GAUAA...CGU-3'@LB@ GG GCUUAAAGAA@LB@ :| :||||||:||@LB@ UC UGAAUUUUUU@LB@3'-UUU...GUUCU G AAGCA...CAA-5'@LB@ | |@LB@ 42 28@LB@@LB@@LB@Energy -7.29 kcal/mol@LB@Hybridization Energy -11.0144 kcal/mol@LB@Unfolding Energy - mRNA 2.10364 kcal/mol@LB@Unfolding Energy - sRNA 1.62306 kcal/mol@LB@@LB@Position - mRNA 47 -- 59@LB@Position - sRNA 29 -- 41@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 29 -- 35@LB@ |
200 |
0.02417 |
0.3893 |
b1747 |
astA |
-6.36 |
0.159223 |
49 -- 56 |
39 -- 46 |
arginine succinyltransferase |
|
_____________48_______57\n_____________|________|\n5'-GGC...UCUCU________GGCGA...AAG-3'\n______________CAGGAAGC\n______________||:|||||\n______________GUUCUUCG\n3'-UUU...AAUUC________UGAAU...CAA-5'\n_____________|________|\n_____________47_______38\n |
50 -- 56 |
39 -- 45 |
-10.5455 kcal/mol |
1.56403 kcal/mol |
2.62555 kcal/mol |
48 57@LB@ | |@LB@5'-GGC...UCUCU GGCGA...AAG-3'@LB@ CAGGAAGC@LB@ ||:|||||@LB@ GUUCUUCG@LB@3'-UUU...AAUUC UGAAU...CAA-5'@LB@ | |@LB@ 47 38@LB@@LB@@LB@Energy -6.36 kcal/mol@LB@Hybridization Energy -10.5455 kcal/mol@LB@Unfolding Energy - mRNA 1.56403 kcal/mol@LB@Unfolding Energy - sRNA 2.62555 kcal/mol@LB@@LB@Position - mRNA 49 -- 56@LB@Position - sRNA 39 -- 46@LB@Position Seed - mRNA 50 -- 56@LB@Position Seed - sRNA 39 -- 45@LB@ |
24 |
0.000694 |
0.09021 |
b2531 |
iscR |
-7.21 |
0.097486 |
53 -- 65 |
27 -- 41 |
isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor |
|
_____________52______________66\n_____________|_______________|\n5'-AUG...AAAAU_______________AAAUA...AAC-3'\n______________GGCACU__GAAGGUU\n______________:|||||__:||::||\n______________UCGUGA__UUUUUAA\n3'-UUU...GUUCU______AU_______GCAAU...CAA-5'\n_____________|_______________|\n_____________42______________26\n |
59 -- 65 |
27 -- 33 |
-10.1429 kcal/mol |
1.29 kcal/mol |
1.6427 kcal/mol |
52 66@LB@ | |@LB@5'-AUG...AAAAU AAAUA...AAC-3'@LB@ GGCACU GAAGGUU@LB@ :||||| :||::||@LB@ UCGUGA UUUUUAA@LB@3'-UUU...GUUCU AU GCAAU...CAA-5'@LB@ | |@LB@ 42 26@LB@@LB@@LB@Energy -7.21 kcal/mol@LB@Hybridization Energy -10.1429 kcal/mol@LB@Unfolding Energy - mRNA 1.29 kcal/mol@LB@Unfolding Energy - sRNA 1.6427 kcal/mol@LB@@LB@Position - mRNA 53 -- 65@LB@Position - sRNA 27 -- 41@LB@Position Seed - mRNA 59 -- 65@LB@Position Seed - sRNA 27 -- 33@LB@ |
58 |
0.002968 |
0.1645 |
b0421 |
ispA |
-9.70 |
0.019970 |
54 -- 76 |
25 -- 47 |
geranyltranstransferase |
|
_____________53______________________77\n_____________|_______________________|\n5'-CUG...CCGCU_G__________GAAC_______AACGC...UCG-3'\n______________G_AAGAGGCGCU____GAGUUCG\n______________|_||||:||:||____:|:||||\n______________C_UUCUUCGUGA____UUUAAGC\n3'-UUU...GAAUU_G__________AUUU_______AAUGU...CAA-5'\n_____________|_______________________|\n_____________48______________________24\n |
70 -- 76 |
25 -- 31 |
-22.3845 kcal/mol |
6.43631 kcal/mol |
6.25056 kcal/mol |
53 77@LB@ | |@LB@5'-CUG...CCGCU G GAAC AACGC...UCG-3'@LB@ G AAGAGGCGCU GAGUUCG@LB@ | ||||:||:|| :|:||||@LB@ C UUCUUCGUGA UUUAAGC@LB@3'-UUU...GAAUU G AUUU AAUGU...CAA-5'@LB@ | |@LB@ 48 24@LB@@LB@@LB@Energy -9.70 kcal/mol@LB@Hybridization Energy -22.3845 kcal/mol@LB@Unfolding Energy - mRNA 6.43631 kcal/mol@LB@Unfolding Energy - sRNA 6.25056 kcal/mol@LB@@LB@Position - mRNA 54 -- 76@LB@Position - sRNA 25 -- 47@LB@Position Seed - mRNA 70 -- 76@LB@Position Seed - sRNA 25 -- 31@LB@ |
97 |
0.007216 |
0.239 |
b2021 |
hisC |
-5.42 |
0.261518 |
59 -- 66 |
37 -- 44 |
histidinol-phosphate aminotransferase |
|
_____________58_______67\n_____________|________|\n5'-GUU...UUUCC________AUGAC...GGC-3'\n______________AGAAGCGC\n______________||||||:|\n______________UCUUCGUG\n3'-UUU...UUCGU________AAUUU...CAA-5'\n_____________|________|\n_____________45_______36\n |
60 -- 66 |
37 -- 43 |
-11.6623 kcal/mol |
1.85203 kcal/mol |
4.39141 kcal/mol |
58 67@LB@ | |@LB@5'-GUU...UUUCC AUGAC...GGC-3'@LB@ AGAAGCGC@LB@ ||||||:|@LB@ UCUUCGUG@LB@3'-UUU...UUCGU AAUUU...CAA-5'@LB@ | |@LB@ 45 36@LB@@LB@@LB@Energy -5.42 kcal/mol@LB@Hybridization Energy -11.6623 kcal/mol@LB@Unfolding Energy - mRNA 1.85203 kcal/mol@LB@Unfolding Energy - sRNA 4.39141 kcal/mol@LB@@LB@Position - mRNA 59 -- 66@LB@Position - sRNA 37 -- 44@LB@Position Seed - mRNA 60 -- 66@LB@Position Seed - sRNA 37 -- 43@LB@ |
11 |
0.0001294 |
0.03789 |
b3687 |
ibpA |
-8.25 |
0.051487 |
69 -- 81 |
26 -- 38 |
heat shock chaperone |
|
_____________68____________82\n_____________|_____________|\n5'-AAC...AUAAG_____________AUUUC...GCU-3'\n______________GCUUGAAAAGUUC\n______________:|||:||||:|||\n______________UGAAUUUUUUAAG\n3'-UUU...CUUCG_____________CAAUG...CAA-5'\n_____________|_____________|\n_____________39____________25\n |
75 -- 81 |
26 -- 32 |
-13.0918 kcal/mol |
3.40592 kcal/mol |
1.43364 kcal/mol |
68 82@LB@ | |@LB@5'-AAC...AUAAG AUUUC...GCU-3'@LB@ GCUUGAAAAGUUC@LB@ :|||:||||:|||@LB@ UGAAUUUUUUAAG@LB@3'-UUU...CUUCG CAAUG...CAA-5'@LB@ | |@LB@ 39 25@LB@@LB@@LB@Energy -8.25 kcal/mol@LB@Hybridization Energy -13.0918 kcal/mol@LB@Unfolding Energy - mRNA 3.40592 kcal/mol@LB@Unfolding Energy - sRNA 1.43364 kcal/mol@LB@@LB@Position - mRNA 69 -- 81@LB@Position - sRNA 26 -- 38@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 26 -- 32@LB@ |
78 |
0.004685 |
0.1935 |
b3905 |
rhaS |
-7.96 |
0.061746 |
70 -- 86 |
26 -- 40 |
transcriptional activator of rhaBAD and rhaT |
|
_____________69________________87\n_____________|_________________|\n5'-UGG...UCACC______CCU________ACGCU...AUG-3'\n______________GCAUUU___GAAAAUUC\n______________|||:||___:|||||||\n______________CGUGAA___UUUUUAAG\n3'-UUU...UUCUU______U__________CAAUG...CAA-5'\n_____________|_________________|\n_____________41________________25\n |
80 -- 86 |
26 -- 32 |
-11.6625 kcal/mol |
2.05222 kcal/mol |
1.64811 kcal/mol |
69 87@LB@ | |@LB@5'-UGG...UCACC CCU ACGCU...AUG-3'@LB@ GCAUUU GAAAAUUC@LB@ |||:|| :|||||||@LB@ CGUGAA UUUUUAAG@LB@3'-UUU...UUCUU U CAAUG...CAA-5'@LB@ | |@LB@ 41 25@LB@@LB@@LB@Energy -7.96 kcal/mol@LB@Hybridization Energy -11.6625 kcal/mol@LB@Unfolding Energy - mRNA 2.05222 kcal/mol@LB@Unfolding Energy - sRNA 1.64811 kcal/mol@LB@@LB@Position - mRNA 70 -- 86@LB@Position - sRNA 26 -- 40@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 26 -- 32@LB@ |
50 |
0.002273 |
0.1465 |
b4159 |
mscM |
-6.32 |
0.162358 |
72 -- 90 |
16 -- 34 |
mechanosensitive channel protein miniconductance |
|
_____________71__________________91\n_____________|___________________|\n5'-AAG...CUACC____CC_____________ACGCU...AGC-3'\n______________GAAA__UUUGUUACGCCAG\n______________:|||__||:|||||:||||\n______________UUUU__AAGCAAUGUGGUC\n3'-UUU...GUGAA____UU_____________CUUUA...CAA-5'\n_____________|___________________|\n_____________35__________________15\n |
84 -- 90 |
16 -- 22 |
-19.9467 kcal/mol |
4.98786 kcal/mol |
8.63814 kcal/mol |
71 91@LB@ | |@LB@5'-AAG...CUACC CC ACGCU...AGC-3'@LB@ GAAA UUUGUUACGCCAG@LB@ :||| ||:|||||:||||@LB@ UUUU AAGCAAUGUGGUC@LB@3'-UUU...GUGAA UU CUUUA...CAA-5'@LB@ | |@LB@ 35 15@LB@@LB@@LB@Energy -6.32 kcal/mol@LB@Hybridization Energy -19.9467 kcal/mol@LB@Unfolding Energy - mRNA 4.98786 kcal/mol@LB@Unfolding Energy - sRNA 8.63814 kcal/mol@LB@@LB@Position - mRNA 72 -- 90@LB@Position - sRNA 16 -- 34@LB@Position Seed - mRNA 84 -- 90@LB@Position Seed - sRNA 16 -- 22@LB@ |
35 |
0.001338 |
0.121 |
b0405 |
queA |
-9.92 |
0.017135 |
73 -- 106 |
26 -- 60 |
S-adenosylmethionine:tRNA ribosyltransferase-isomerase |
|
_____________72____________________________________107\n_____________|_____________________________________|\n5'-GGG...UCCGC_____GG___A__U_____U_________________AUCGA...GGC-3'\n______________GAGAU__GCU_AA_GCAGG_GAGC___UAAAAAAUUC\n______________||:|:__|||_||_|||:|_:|||___||||||||||\n______________CUUUG__CGA_UU_CGUUC_UUCG___AUUUUUUAAG\n3'-UUU...CCCUA_____AA___A_____________UGA__________CAAUG...CAA-5'\n_____________|_____________________________________|\n_____________61____________________________________25\n |
100 -- 106 |
26 -- 32 |
-25.4572 kcal/mol |
9.25896 kcal/mol |
6.27609 kcal/mol |
72 107@LB@ | |@LB@5'-GGG...UCCGC GG A U U AUCGA...GGC-3'@LB@ GAGAU GCU AA GCAGG GAGC UAAAAAAUUC@LB@ ||:|: ||| || |||:| :||| ||||||||||@LB@ CUUUG CGA UU CGUUC UUCG AUUUUUUAAG@LB@3'-UUU...CCCUA AA A UGA CAAUG...CAA-5'@LB@ | |@LB@ 61 25@LB@@LB@@LB@Energy -9.92 kcal/mol@LB@Hybridization Energy -25.4572 kcal/mol@LB@Unfolding Energy - mRNA 9.25896 kcal/mol@LB@Unfolding Energy - sRNA 6.27609 kcal/mol@LB@@LB@Position - mRNA 73 -- 106@LB@Position - sRNA 26 -- 60@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 26 -- 32@LB@ |
1 |
4.307e-10 |
1.387e-06 |
b2741 |
rpoS |
-17.23 |
0.000044 |
75 -- 104 |
10 -- 40 |
RNA polymerase sigma S (sigma 38) factor |
|
_____________74______________________________105\n_____________|_______________________________|\n5'-CGG...CGCUU______U______________AG________CGUAA...AGG-3'\n______________GCAUUU__GAAAUUCGUUACA__GGGAAAUC\n______________|||:||__:||||||||||||__:|||||||\n______________CGUGAA__UUUUAAGCAAUGU__UCCUUUAG\n3'-UUU...UUCUU______UU_____________GG________ACUAC...CAA-5'\n_____________|_______________________________|\n_____________41______________________________9\n |
98 -- 104 |
10 -- 16 |
-32.4258 kcal/mol |
5.97429 kcal/mol |
9.22048 kcal/mol |
74 105@LB@ | |@LB@5'-CGG...CGCUU U AG CGUAA...AGG-3'@LB@ GCAUUU GAAAUUCGUUACA GGGAAAUC@LB@ |||:|| :|||||||||||| :|||||||@LB@ CGUGAA UUUUAAGCAAUGU UCCUUUAG@LB@3'-UUU...UUCUU UU GG ACUAC...CAA-5'@LB@ | |@LB@ 41 9@LB@@LB@@LB@Energy -17.23 kcal/mol@LB@Hybridization Energy -32.4258 kcal/mol@LB@Unfolding Energy - mRNA 5.97429 kcal/mol@LB@Unfolding Energy - sRNA 9.22048 kcal/mol@LB@@LB@Position - mRNA 75 -- 104@LB@Position - sRNA 10 -- 40@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 10 -- 16@LB@ |
122 |
0.01076 |
0.2828 |
b1908 |
yecA |
-7.65 |
0.074805 |
79 -- 96 |
18 -- 40 |
UPF0149 family protein |
|
_____________78_______________________97\n_____________|________________________|\n5'-UAC...UGCCU__A_____________________CUCCU...UGG-3'\n______________GC_ACUUG______UCGUUACACC\n______________||_||||:______||||||||||\n______________CG_UGAAU______AGCAAUGUGG\n3'-UUU...UUCUU________UUUUUA__________UCCUU...CAA-5'\n_____________|________________________|\n_____________41_______________________17\n |
90 -- 96 |
18 -- 24 |
-19.1188 kcal/mol |
2.30438 kcal/mol |
9.1639 kcal/mol |
78 97@LB@ | |@LB@5'-UAC...UGCCU A CUCCU...UGG-3'@LB@ GC ACUUG UCGUUACACC@LB@ || ||||: ||||||||||@LB@ CG UGAAU AGCAAUGUGG@LB@3'-UUU...UUCUU UUUUUA UCCUU...CAA-5'@LB@ | |@LB@ 41 17@LB@@LB@@LB@Energy -7.65 kcal/mol@LB@Hybridization Energy -19.1188 kcal/mol@LB@Unfolding Energy - mRNA 2.30438 kcal/mol@LB@Unfolding Energy - sRNA 9.1639 kcal/mol@LB@@LB@Position - mRNA 79 -- 96@LB@Position - sRNA 18 -- 40@LB@Position Seed - mRNA 90 -- 96@LB@Position Seed - sRNA 18 -- 24@LB@ |
76 |
0.004539 |
0.1924 |
b1722 |
ydiY |
-10.86 |
0.008894 |
80 -- 126 |
13 -- 55 |
acid-inducible putative outer membrane protein |
|
_____________79_______________________________________________127\n_____________|________________________________________________|\n5'-UAA...AUACA__________UAUUC___C___UUUAU__________CUUU_______CGCUA...UGG-3'\n______________UUGC_UAAGU_____GCG_CUU_____AAUUCGUUAC____CCAGGGA\n______________||||_||||:_____||:_|||_____||||||||||____|||||:|\n______________AACG_AUUCG_____CGU_GAA_____UUAAGCAAUG____GGUCCUU\n3'-UUU...CUUUG____A_____UUCUU_______UUUU___________U__________UAGAC...CAA-5'\n_____________|________________________________________________|\n_____________56_______________________________________________12\n |
109 -- 115 |
21 -- 27 |
-32.5898 kcal/mol |
7.90727 kcal/mol |
13.8238 kcal/mol |
79 127@LB@ | |@LB@5'-UAA...AUACA UAUUC C UUUAU CUUU CGCUA...UGG-3'@LB@ UUGC UAAGU GCG CUU AAUUCGUUAC CCAGGGA@LB@ |||| ||||: ||: ||| |||||||||| |||||:|@LB@ AACG AUUCG CGU GAA UUAAGCAAUG GGUCCUU@LB@3'-UUU...CUUUG A UUCUU UUUU U UAGAC...CAA-5'@LB@ | |@LB@ 56 12@LB@@LB@@LB@Energy -10.86 kcal/mol@LB@Hybridization Energy -32.5898 kcal/mol@LB@Unfolding Energy - mRNA 7.90727 kcal/mol@LB@Unfolding Energy - sRNA 13.8238 kcal/mol@LB@@LB@Position - mRNA 80 -- 126@LB@Position - sRNA 13 -- 55@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 21 -- 27@LB@ |
170 |
0.01916 |
0.363 |
b1202 |
ycgV |
-6.78 |
0.125661 |
82 -- 88 |
39 -- 45 |
putative adhesin |
b2647 |
_____________81______89\n_____________|_______|\n5'-ACU...UCUCU_______UCAUC...UUG-3'\n______________GAGAAGC\n______________:||||||\n______________UUCUUCG\n3'-UUU...AUUCG_______UGAAU...CAA-5'\n_____________|_______|\n_____________46______38\n |
82 -- 88 |
39 -- 45 |
-7.60605 kcal/mol |
0.31609 kcal/mol |
0.514773 kcal/mol |
81 89@LB@ | |@LB@5'-ACU...UCUCU UCAUC...UUG-3'@LB@ GAGAAGC@LB@ :||||||@LB@ UUCUUCG@LB@3'-UUU...AUUCG UGAAU...CAA-5'@LB@ | |@LB@ 46 38@LB@@LB@@LB@Energy -6.78 kcal/mol@LB@Hybridization Energy -7.60605 kcal/mol@LB@Unfolding Energy - mRNA 0.31609 kcal/mol@LB@Unfolding Energy - sRNA 0.514773 kcal/mol@LB@@LB@Position - mRNA 82 -- 88@LB@Position - sRNA 39 -- 45@LB@Position Seed - mRNA 82 -- 88@LB@Position Seed - sRNA 39 -- 45@LB@ |
109 |
0.009396 |
0.2693 |
b1958 |
yedI |
-10.22 |
0.013950 |
83 -- 110 |
33 -- 54 |
DUF808 family inner membrane protein |
|
_____________82_____________________________111\n_____________|______________________________|\n5'-AAA...CAUUC______________AUAUAAUU________UUGUU...CCG-3'\n______________UGCU__GGCGAGAG________GCACUUGA\n______________||||__:||:|||:________||||||:|\n______________ACGA__UCGUUCUU________CGUGAAUU\n3'-UUU...UUUGA____AU________________________UUUUA...CAA-5'\n_____________|______________________________|\n_____________55_____________________________32\n |
104 -- 110 |
33 -- 39 |
-21.3805 kcal/mol |
4.98239 kcal/mol |
6.17798 kcal/mol |
82 111@LB@ | |@LB@5'-AAA...CAUUC AUAUAAUU UUGUU...CCG-3'@LB@ UGCU GGCGAGAG GCACUUGA@LB@ |||| :||:|||: ||||||:|@LB@ ACGA UCGUUCUU CGUGAAUU@LB@3'-UUU...UUUGA AU UUUUA...CAA-5'@LB@ | |@LB@ 55 32@LB@@LB@@LB@Energy -10.22 kcal/mol@LB@Hybridization Energy -21.3805 kcal/mol@LB@Unfolding Energy - mRNA 4.98239 kcal/mol@LB@Unfolding Energy - sRNA 6.17798 kcal/mol@LB@@LB@Position - mRNA 83 -- 110@LB@Position - sRNA 33 -- 54@LB@Position Seed - mRNA 104 -- 110@LB@Position Seed - sRNA 33 -- 39@LB@ |
69 |
0.00357 |
0.1645 |
b0571 |
cusR |
-5.90 |
0.203942 |
86 -- 99 |
6 -- 21 |
response regulator in two-component regulatory system with CusS |
b1969 |
_____________85_______________100\n_____________|________________|\n5'-AGC...UUACU_______C________UUUCC...GGC-3'\n______________CGCCAGG___UCUGAU\n______________|:|||||___||||||\n______________GUGGUCC___AGACUA\n3'-UUU...GCAAU_______UUU______CACAA-5'\n_____________|________________|\n_____________22_______________5\n |
86 -- 92 |
15 -- 21 |
-18.4182 kcal/mol |
4.95815 kcal/mol |
7.56001 kcal/mol |
85 100@LB@ | |@LB@5'-AGC...UUACU C UUUCC...GGC-3'@LB@ CGCCAGG UCUGAU@LB@ |:||||| ||||||@LB@ GUGGUCC AGACUA@LB@3'-UUU...GCAAU UUU CACAA-5'@LB@ | |@LB@ 22 5@LB@@LB@@LB@Energy -5.90 kcal/mol@LB@Hybridization Energy -18.4182 kcal/mol@LB@Unfolding Energy - mRNA 4.95815 kcal/mol@LB@Unfolding Energy - sRNA 7.56001 kcal/mol@LB@@LB@Position - mRNA 86 -- 99@LB@Position - sRNA 6 -- 21@LB@Position Seed - mRNA 86 -- 92@LB@Position Seed - sRNA 15 -- 21@LB@ |
111 |
0.009564 |
0.2693 |
b2040 |
rfbD |
-5.00 |
0.321114 |
87 -- 99 |
24 -- 42 |
dTDP-L-rhamnose synthase NAD(P)-dependent dTDP-4-dehydrorhamnose reductase subunit |
|
_____________86__________________100\n_____________|___________________|\n5'-GAU...UUUGA___________________AAAAC...CUA-3'\n______________GAGCG______GGAUUCGU\n______________:|||:______::||||||\n______________UUCGU______UUUAAGCA\n3'-UUU...CGUUC_____GAAUUU________AUGUG...CAA-5'\n_____________|___________________|\n_____________43__________________23\n |
93 -- 99 |
24 -- 30 |
-9.51502 kcal/mol |
2.86783 kcal/mol |
1.64896 kcal/mol |
86 100@LB@ | |@LB@5'-GAU...UUUGA AAAAC...CUA-3'@LB@ GAGCG GGAUUCGU@LB@ :|||: ::||||||@LB@ UUCGU UUUAAGCA@LB@3'-UUU...CGUUC GAAUUU AUGUG...CAA-5'@LB@ | |@LB@ 43 23@LB@@LB@@LB@Energy -5.00 kcal/mol@LB@Hybridization Energy -9.51502 kcal/mol@LB@Unfolding Energy - mRNA 2.86783 kcal/mol@LB@Unfolding Energy - sRNA 1.64896 kcal/mol@LB@@LB@Position - mRNA 87 -- 99@LB@Position - sRNA 24 -- 42@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 24 -- 30@LB@ |
172 |
0.01959 |
0.3668 |
b0336 |
codB |
-6.02 |
0.190787 |
88 -- 108 |
28 -- 40 |
cytosine transporter |
|
_____________87____________________109\n_____________|_____________________|\n5'-CCA...UUUUU_____CAUUCAUA________AUAUU...UUU-3'\n______________GCACU________UAAAAAAU\n______________|||||________||||||||\n______________CGUGA________AUUUUUUA\n3'-UUU...UUCUU_____________________AGCAA...CAA-5'\n_____________|_____________________|\n_____________41____________________27\n |
102 -- 108 |
28 -- 34 |
-8.50412 kcal/mol |
0.843154 kcal/mol |
1.63611 kcal/mol |
87 109@LB@ | |@LB@5'-CCA...UUUUU CAUUCAUA AUAUU...UUU-3'@LB@ GCACU UAAAAAAU@LB@ ||||| ||||||||@LB@ CGUGA AUUUUUUA@LB@3'-UUU...UUCUU AGCAA...CAA-5'@LB@ | |@LB@ 41 27@LB@@LB@@LB@Energy -6.02 kcal/mol@LB@Hybridization Energy -8.50412 kcal/mol@LB@Unfolding Energy - mRNA 0.843154 kcal/mol@LB@Unfolding Energy - sRNA 1.63611 kcal/mol@LB@@LB@Position - mRNA 88 -- 108@LB@Position - sRNA 28 -- 40@LB@Position Seed - mRNA 102 -- 108@LB@Position Seed - sRNA 28 -- 34@LB@ |
129 |
0.01228 |
0.3033 |
b2249 |
yfaY |
-6.27 |
0.166554 |
88 -- 102 |
6 -- 22 |
inactive PncC family protein |
|
_____________87________________103\n_____________|_________________|\n5'-UUG...GGUUA_______UU________CCCUU...AGG-3'\n______________ACGCCAG____UCUGAU\n______________||:||||____||||||\n______________UGUGGUC____AGACUA\n3'-UUU...AGCAA_______CUUU______CACAA-5'\n_____________|_________________|\n_____________23________________5\n |
88 -- 94 |
16 -- 22 |
-16.5501 kcal/mol |
2.71406 kcal/mol |
7.56159 kcal/mol |
87 103@LB@ | |@LB@5'-UUG...GGUUA UU CCCUU...AGG-3'@LB@ ACGCCAG UCUGAU@LB@ ||:|||| ||||||@LB@ UGUGGUC AGACUA@LB@3'-UUU...AGCAA CUUU CACAA-5'@LB@ | |@LB@ 23 5@LB@@LB@@LB@Energy -6.27 kcal/mol@LB@Hybridization Energy -16.5501 kcal/mol@LB@Unfolding Energy - mRNA 2.71406 kcal/mol@LB@Unfolding Energy - sRNA 7.56159 kcal/mol@LB@@LB@Position - mRNA 88 -- 102@LB@Position - sRNA 6 -- 22@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 16 -- 22@LB@ |
85 |
0.005692 |
0.2157 |
b4052 |
dnaB |
-8.38 |
0.047402 |
89 -- 103 |
26 -- 40 |
replicative DNA helicase |
|
_____________88______________104\n_____________|_______________|\n5'-UGC...CCACC_______U_______AAUUC...CGG-3'\n______________GUGCUUG_GAAAUUC\n______________|::|||:_:||||||\n______________CGUGAAU_UUUUAAG\n3'-UUU...UUCUU_______U_______CAAUG...CAA-5'\n_____________|_______________|\n_____________41______________25\n |
97 -- 103 |
26 -- 32 |
-13.045 kcal/mol |
3.01413 kcal/mol |
1.64811 kcal/mol |
88 104@LB@ | |@LB@5'-UGC...CCACC U AAUUC...CGG-3'@LB@ GUGCUUG GAAAUUC@LB@ |::|||: :||||||@LB@ CGUGAAU UUUUAAG@LB@3'-UUU...UUCUU U CAAUG...CAA-5'@LB@ | |@LB@ 41 25@LB@@LB@@LB@Energy -8.38 kcal/mol@LB@Hybridization Energy -13.045 kcal/mol@LB@Unfolding Energy - mRNA 3.01413 kcal/mol@LB@Unfolding Energy - sRNA 1.64811 kcal/mol@LB@@LB@Position - mRNA 89 -- 103@LB@Position - sRNA 26 -- 40@LB@Position Seed - mRNA 97 -- 103@LB@Position Seed - sRNA 26 -- 32@LB@ |
167 |
0.01879 |
0.3614 |
b4383 |
deoB |
-8.94 |
0.033088 |
90 -- 118 |
37 -- 59 |
phosphopentomutase |
|
_____________89____________________________119\n_____________|_____________________________|\n5'-AGG...CAAUU________CGAUA_____CC__A______ACCAA...AUA-3'\n______________AAACUUGC_____AAGCA__GG_AAGCAC\n______________||||||||_____|||||__:|_||||||\n______________UUUGAACG_____UUCGU__UC_UUCGUG\n3'-UUU...CCUAC________AA___________________AAUUU...CAA-5'\n_____________|_____________________________|\n_____________60____________________________36\n |
91 -- 97 |
52 -- 58 |
-21.3309 kcal/mol |
6.14475 kcal/mol |
6.24627 kcal/mol |
89 119@LB@ | |@LB@5'-AGG...CAAUU CGAUA CC A ACCAA...AUA-3'@LB@ AAACUUGC AAGCA GG AAGCAC@LB@ |||||||| ||||| :| ||||||@LB@ UUUGAACG UUCGU UC UUCGUG@LB@3'-UUU...CCUAC AA AAUUU...CAA-5'@LB@ | |@LB@ 60 36@LB@@LB@@LB@Energy -8.94 kcal/mol@LB@Hybridization Energy -21.3309 kcal/mol@LB@Unfolding Energy - mRNA 6.14475 kcal/mol@LB@Unfolding Energy - sRNA 6.24627 kcal/mol@LB@@LB@Position - mRNA 90 -- 118@LB@Position - sRNA 37 -- 59@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 52 -- 58@LB@ |
191 |
0.02253 |
0.38 |
b3186 |
rplU |
-5.10 |
0.305418 |
95 -- 102 |
34 -- 41 |
50S ribosomal subunit protein L21 |
|
_____________94_______103\n_____________|________|\n5'-UUA...ACUGU________UCAAA...UUG-3'\n______________AGCACUUG\n______________|||||||:\n______________UCGUGAAU\n3'-UUU...GUUCU________UUUUU...CAA-5'\n_____________|________|\n_____________42_______33\n |
96 -- 102 |
34 -- 40 |
-9.60207 kcal/mol |
2.88333 kcal/mol |
1.6155 kcal/mol |
94 103@LB@ | |@LB@5'-UUA...ACUGU UCAAA...UUG-3'@LB@ AGCACUUG@LB@ |||||||:@LB@ UCGUGAAU@LB@3'-UUU...GUUCU UUUUU...CAA-5'@LB@ | |@LB@ 42 33@LB@@LB@@LB@Energy -5.10 kcal/mol@LB@Hybridization Energy -9.60207 kcal/mol@LB@Unfolding Energy - mRNA 2.88333 kcal/mol@LB@Unfolding Energy - sRNA 1.6155 kcal/mol@LB@@LB@Position - mRNA 95 -- 102@LB@Position - sRNA 34 -- 41@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 34 -- 40@LB@ |
48 |
0.002202 |
0.1465 |
b3209 |
elbB |
-11.61 |
0.005163 |
95 -- 137 |
2 -- 41 |
isoprenoid biosynthesis protein with amidotransferase-like domain |
|
_____________94__________________________________________138\n_____________|___________________________________________|\n5'-GCG...AAGAU___AAA_______U____________G_AUC____AA______GAUGC...GUG-3'\n______________AGC___ACUUAAA_GAUUUGUUACAU_A___AGUU__AUGUGU\n______________|||___|||||||_:|||:||||||:_|___|:|:__||||||\n______________UCG___UGAAUUU_UUAAGCAAUGUG_U___UUAG__UACACA\n3'-UUU...GUUCU_____________U____________G_CCU____AC______A-5'\n_____________|___________________________________________|\n_____________42__________________________________________1\n |
101 -- 107 |
32 -- 38 |
-29.0989 kcal/mol |
8.27062 kcal/mol |
9.22136 kcal/mol |
94 138@LB@ | |@LB@5'-GCG...AAGAU AAA U G AUC AA GAUGC...GUG-3'@LB@ AGC ACUUAAA GAUUUGUUACAU A AGUU AUGUGU@LB@ ||| ||||||| :|||:||||||: | |:|: ||||||@LB@ UCG UGAAUUU UUAAGCAAUGUG U UUAG UACACA@LB@3'-UUU...GUUCU U G CCU AC A-5'@LB@ | |@LB@ 42 1@LB@@LB@@LB@Energy -11.61 kcal/mol@LB@Hybridization Energy -29.0989 kcal/mol@LB@Unfolding Energy - mRNA 8.27062 kcal/mol@LB@Unfolding Energy - sRNA 9.22136 kcal/mol@LB@@LB@Position - mRNA 95 -- 137@LB@Position - sRNA 2 -- 41@LB@Position Seed - mRNA 101 -- 107@LB@Position Seed - sRNA 32 -- 38@LB@ |
31 |
0.0009469 |
0.09599 |
b0166 |
dapD |
-11.60 |
0.005180 |
96 -- 124 |
11 -- 40 |
2 3 4 5-tetrahydropyridine-2-carboxylate N-succinyltransferase |
|
_____________95_____________________________125\n_____________|______________________________|\n5'-UUG...GGCGU________UAACGA_______G________GCAUC...AGG-3'\n______________GCGCUUAA_______GUUGCA_CAGGAAGU\n______________||:|||||_______|||:||_||||||:|\n______________CGUGAAUU_______CAAUGU_GUCCUUUA\n3'-UUU...UUCUU________UUUUAAG______G________GACUA...CAA-5'\n_____________|______________________________|\n_____________41_____________________________10\n |
97 -- 103 |
33 -- 39 |
-29.7713 kcal/mol |
8.96001 kcal/mol |
9.20882 kcal/mol |
95 125@LB@ | |@LB@5'-UUG...GGCGU UAACGA G GCAUC...AGG-3'@LB@ GCGCUUAA GUUGCA CAGGAAGU@LB@ ||:||||| |||:|| ||||||:|@LB@ CGUGAAUU CAAUGU GUCCUUUA@LB@3'-UUU...UUCUU UUUUAAG G GACUA...CAA-5'@LB@ | |@LB@ 41 10@LB@@LB@@LB@Energy -11.60 kcal/mol@LB@Hybridization Energy -29.7713 kcal/mol@LB@Unfolding Energy - mRNA 8.96001 kcal/mol@LB@Unfolding Energy - sRNA 9.20882 kcal/mol@LB@@LB@Position - mRNA 96 -- 124@LB@Position - sRNA 11 -- 40@LB@Position Seed - mRNA 97 -- 103@LB@Position Seed - sRNA 33 -- 39@LB@ |
46 |
0.002046 |
0.1433 |
b3106 |
yhaK |
-10.10 |
0.015122 |
97 -- 120 |
7 -- 28 |
redox-sensitive bicupin |
|
_____________96_______________________121\n_____________|________________________|\n5'-UCC...GCCAU______CU__U_____________ACAUA...AAU-3'\n______________UUCGUU__CA_UCAGGAAAUUUGA\n______________||||||__||_:||||||||:|||\n______________AAGCAA__GU_GGUCCUUUAGACU\n3'-UUU...UUUUU______U_________________ACACAA-5'\n_____________|________________________|\n_____________29_______________________6\n |
111 -- 117 |
10 -- 16 |
-23.1033 kcal/mol |
4.40095 kcal/mol |
8.59864 kcal/mol |
96 121@LB@ | |@LB@5'-UCC...GCCAU CU U ACAUA...AAU-3'@LB@ UUCGUU CA UCAGGAAAUUUGA@LB@ |||||| || :||||||||:|||@LB@ AAGCAA GU GGUCCUUUAGACU@LB@3'-UUU...UUUUU U ACACAA-5'@LB@ | |@LB@ 29 6@LB@@LB@@LB@Energy -10.10 kcal/mol@LB@Hybridization Energy -23.1033 kcal/mol@LB@Unfolding Energy - mRNA 4.40095 kcal/mol@LB@Unfolding Energy - sRNA 8.59864 kcal/mol@LB@@LB@Position - mRNA 97 -- 120@LB@Position - sRNA 7 -- 28@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 10 -- 16@LB@ |
27 |
0.0008083 |
0.09021 |
b2711 |
norW |
-10.17 |
0.014477 |
99 -- 112 |
13 -- 26 |
NADH:flavorubredoxin oxidoreductase |
|
_____________98_____________113\n_____________|______________|\n5'-GAA...CAGGA______________CGCCG...UUG-3'\n______________CGUUGCGCCAGGAA\n______________||||:|:|||||||\n______________GCAAUGUGGUCCUU\n3'-UUU...UUUAA______________UAGAC...CAA-5'\n_____________|______________|\n_____________27_____________12\n |
106 -- 112 |
13 -- 19 |
-23.5838 kcal/mol |
5.14562 kcal/mol |
8.27144 kcal/mol |
98 113@LB@ | |@LB@5'-GAA...CAGGA CGCCG...UUG-3'@LB@ CGUUGCGCCAGGAA@LB@ ||||:|:|||||||@LB@ GCAAUGUGGUCCUU@LB@3'-UUU...UUUAA UAGAC...CAA-5'@LB@ | |@LB@ 27 12@LB@@LB@@LB@Energy -10.17 kcal/mol@LB@Hybridization Energy -23.5838 kcal/mol@LB@Unfolding Energy - mRNA 5.14562 kcal/mol@LB@Unfolding Energy - sRNA 8.27144 kcal/mol@LB@@LB@Position - mRNA 99 -- 112@LB@Position - sRNA 13 -- 26@LB@Position Seed - mRNA 106 -- 112@LB@Position Seed - sRNA 13 -- 19@LB@ |
72 |
0.003773 |
0.1688 |
b1860 |
ruvB |
-7.81 |
0.067658 |
103 -- 111 |
38 -- 46 |
ATP-dependent DNA helicase component of RuvABC resolvasome |
|
_____________102_______112\n_____________|_________|\n5'-ACG...AACCA_________AGCCG...GUC-3'\n______________CAAGAAGCA\n______________|||||||||\n______________GUUCUUCGU\n3'-UUU...AAUUC_________GAAUU...CAA-5'\n_____________|_________|\n_____________47________37\n |
105 -- 111 |
38 -- 44 |
-11.4188 kcal/mol |
0.978333 kcal/mol |
2.62609 kcal/mol |
102 112@LB@ | |@LB@5'-ACG...AACCA AGCCG...GUC-3'@LB@ CAAGAAGCA@LB@ |||||||||@LB@ GUUCUUCGU@LB@3'-UUU...AAUUC GAAUU...CAA-5'@LB@ | |@LB@ 47 37@LB@@LB@@LB@Energy -7.81 kcal/mol@LB@Hybridization Energy -11.4188 kcal/mol@LB@Unfolding Energy - mRNA 0.978333 kcal/mol@LB@Unfolding Energy - sRNA 2.62609 kcal/mol@LB@@LB@Position - mRNA 103 -- 111@LB@Position - sRNA 38 -- 46@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 38 -- 44@LB@ |
139 |
0.01338 |
0.3093 |
b3765 |
yifB |
-8.91 |
0.033732 |
103 -- 139 |
26 -- 57 |
magnesium chelatase family protein and putative transcriptional regulator |
|
_____________102______________________________________140\n_____________|________________________________________|\n5'-AAA...ACUUC______ACAAA___A_____AUC__C______________ACGAA...CGA-3'\n______________ACUUGC_____UAA_CAGGA___AG_CACU___AAAAUUC\n______________||||||_____|||_||:||___||_||||___|||||||\n______________UGAACG_____AUU_GUUCU___UC_GUGA___UUUUAAG\n3'-UUU...UACUU______A_______C_______________AUU_______CAAUG...CAA-5'\n_____________|________________________________________|\n_____________58_______________________________________25\n |
133 -- 139 |
26 -- 32 |
-18.0428 kcal/mol |
2.85625 kcal/mol |
6.27605 kcal/mol |
102 140@LB@ | |@LB@5'-AAA...ACUUC ACAAA A AUC C ACGAA...CGA-3'@LB@ ACUUGC UAA CAGGA AG CACU AAAAUUC@LB@ |||||| ||| ||:|| || |||| |||||||@LB@ UGAACG AUU GUUCU UC GUGA UUUUAAG@LB@3'-UUU...UACUU A C AUU CAAUG...CAA-5'@LB@ | |@LB@ 58 25@LB@@LB@@LB@Energy -8.91 kcal/mol@LB@Hybridization Energy -18.0428 kcal/mol@LB@Unfolding Energy - mRNA 2.85625 kcal/mol@LB@Unfolding Energy - sRNA 6.27605 kcal/mol@LB@@LB@Position - mRNA 103 -- 139@LB@Position - sRNA 26 -- 57@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 26 -- 32@LB@ |
198 |
0.02375 |
0.3864 |
b3946 |
fsaB |
-8.18 |
0.053967 |
105 -- 117 |
26 -- 40 |
fructose-6-phosphate aldolase 2 |
|
_____________104_____________118\n_____________|_______________|\n5'-UGG...AUCAU_______________CGUAA...CUG-3'\n______________GCAC__GAAGAAUUC\n______________||||__:||:|||||\n______________CGUG__UUUUUUAAG\n3'-UUU...UUCUU____AA_________CAAUG...CAA-5'\n_____________|_______________|\n_____________41______________25\n |
111 -- 117 |
26 -- 32 |
-11.851 kcal/mol |
2.02524 kcal/mol |
1.64811 kcal/mol |
104 118@LB@ | |@LB@5'-UGG...AUCAU CGUAA...CUG-3'@LB@ GCAC GAAGAAUUC@LB@ |||| :||:|||||@LB@ CGUG UUUUUUAAG@LB@3'-UUU...UUCUU AA CAAUG...CAA-5'@LB@ | |@LB@ 41 25@LB@@LB@@LB@Energy -8.18 kcal/mol@LB@Hybridization Energy -11.851 kcal/mol@LB@Unfolding Energy - mRNA 2.02524 kcal/mol@LB@Unfolding Energy - sRNA 1.64811 kcal/mol@LB@@LB@Position - mRNA 105 -- 117@LB@Position - sRNA 26 -- 40@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 26 -- 32@LB@ |
40 |
0.001639 |
0.1292 |
b0156 |
erpA |
-9.82 |
0.018424 |
105 -- 133 |
14 -- 48 |
iron-sulfur cluster insertion protein |
|
_____________104_________________________________134\n_____________|___________________________________|\n5'-UAG...CAGCC________________________AA_________UAUUA...UAC-3'\n______________AGCGAGAA_UACUUGAA_____CG__AUACCAGGG\n______________|||:||||_:||||:||_____||__|:||||||:\n______________UCGUUCUU_GUGAAUUU_____GC__UGUGGUCCU\n3'-UUU...CGAAU________C________UUUAA__AA_________UUAGA...CAA-5'\n_____________|___________________________________|\n_____________49__________________________________13\n |
127 -- 133 |
14 -- 20 |
-29.1703 kcal/mol |
5.55319 kcal/mol |
13.801 kcal/mol |
104 134@LB@ | |@LB@5'-UAG...CAGCC AA UAUUA...UAC-3'@LB@ AGCGAGAA UACUUGAA CG AUACCAGGG@LB@ |||:|||| :||||:|| || |:||||||:@LB@ UCGUUCUU GUGAAUUU GC UGUGGUCCU@LB@3'-UUU...CGAAU C UUUAA AA UUAGA...CAA-5'@LB@ | |@LB@ 49 13@LB@@LB@@LB@Energy -9.82 kcal/mol@LB@Hybridization Energy -29.1703 kcal/mol@LB@Unfolding Energy - mRNA 5.55319 kcal/mol@LB@Unfolding Energy - sRNA 13.801 kcal/mol@LB@@LB@Position - mRNA 105 -- 133@LB@Position - sRNA 14 -- 48@LB@Position Seed - mRNA 127 -- 133@LB@Position Seed - sRNA 14 -- 20@LB@ |
73 |
0.004067 |
0.1794 |
b1244 |
oppB |
-5.52 |
0.247965 |
106 -- 113 |
36 -- 43 |
oligopeptide ABC transporter permease |
|
_____________105______114\n_____________|________|\n5'-UCC...AUUGU________AAUGG...GCC-3'\n______________GAAGCACU\n______________||||||||\n______________CUUCGUGA\n3'-UUU...UCGUU________AUUUU...CAA-5'\n_____________|________|\n_____________44_______35\n |
107 -- 113 |
36 -- 42 |
-11.7212 kcal/mol |
2.50266 kcal/mol |
3.69444 kcal/mol |
105 114@LB@ | |@LB@5'-UCC...AUUGU AAUGG...GCC-3'@LB@ GAAGCACU@LB@ ||||||||@LB@ CUUCGUGA@LB@3'-UUU...UCGUU AUUUU...CAA-5'@LB@ | |@LB@ 44 35@LB@@LB@@LB@Energy -5.52 kcal/mol@LB@Hybridization Energy -11.7212 kcal/mol@LB@Unfolding Energy - mRNA 2.50266 kcal/mol@LB@Unfolding Energy - sRNA 3.69444 kcal/mol@LB@@LB@Position - mRNA 106 -- 113@LB@Position - sRNA 36 -- 43@LB@Position Seed - mRNA 107 -- 113@LB@Position Seed - sRNA 36 -- 42@LB@ |
115 |
0.009659 |
0.2693 |
b0155 |
clcA |
-5.80 |
0.214551 |
108 -- 124 |
25 -- 40 |
H(+)/Cl(-) exchange transporter |
|
_____________107_______________125\n_____________|_________________|\n5'-AGU...UUUGU__________C___A__CUUUG...UAG-3'\n______________GCAUUUGAAA_AUU_CG\n______________|||:||:|||_|||_||\n______________CGUGAAUUUU_UAA_GC\n3'-UUU...UUCUU__________U______AAUGU...CAA-5'\n_____________|_________________|\n_____________41________________24\n |
109 -- 115 |
33 -- 39 |
-11.0899 kcal/mol |
3.63771 kcal/mol |
1.64821 kcal/mol |
107 125@LB@ | |@LB@5'-AGU...UUUGU C A CUUUG...UAG-3'@LB@ GCAUUUGAAA AUU CG@LB@ |||:||:||| ||| ||@LB@ CGUGAAUUUU UAA GC@LB@3'-UUU...UUCUU U AAUGU...CAA-5'@LB@ | |@LB@ 41 24@LB@@LB@@LB@Energy -5.80 kcal/mol@LB@Hybridization Energy -11.0899 kcal/mol@LB@Unfolding Energy - mRNA 3.63771 kcal/mol@LB@Unfolding Energy - sRNA 1.64821 kcal/mol@LB@@LB@Position - mRNA 108 -- 124@LB@Position - sRNA 25 -- 40@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 33 -- 39@LB@ |
53 |
0.002646 |
0.1597 |
b1704 |
aroH |
-6.03 |
0.190589 |
111 -- 120 |
31 -- 40 |
3-deoxy-D-arabino-heptulosonate-7-phosphate synthase tryptophan repressible |
|
_____________110________121\n_____________|__________|\n5'-CCA...ACCUC__________UCAGC...CCC-3'\n______________GCACUUGAAA\n______________||||||:|||\n______________CGUGAAUUUU\n3'-UUU...UUCUU__________UUAAG...CAA-5'\n_____________|__________|\n_____________41_________30\n |
114 -- 120 |
31 -- 37 |
-11.574 kcal/mol |
3.92769 kcal/mol |
1.61955 kcal/mol |
110 121@LB@ | |@LB@5'-CCA...ACCUC UCAGC...CCC-3'@LB@ GCACUUGAAA@LB@ ||||||:|||@LB@ CGUGAAUUUU@LB@3'-UUU...UUCUU UUAAG...CAA-5'@LB@ | |@LB@ 41 30@LB@@LB@@LB@Energy -6.03 kcal/mol@LB@Hybridization Energy -11.574 kcal/mol@LB@Unfolding Energy - mRNA 3.92769 kcal/mol@LB@Unfolding Energy - sRNA 1.61955 kcal/mol@LB@@LB@Position - mRNA 111 -- 120@LB@Position - sRNA 31 -- 40@LB@Position Seed - mRNA 114 -- 120@LB@Position Seed - sRNA 31 -- 37@LB@ |
68 |
0.003533 |
0.1645 |
b3650 |
spoT |
-9.27 |
0.026581 |
116 -- 140 |
36 -- 60 |
bifunctional (p)ppGpp synthetase II/ guanosine-3' 5'-bis pyrophosphate 3'-pyrophosphohydrolase |
|
_____________115________________________141\n_____________|__________________________|\n5'-UAG...CGCCA_____A___AA___________C___GAAUU...CUC-3'\n______________GGAAC__GC__GAGCAGGAAGC_GCU\n______________|:|||__||__:||||:|||||_:||\n______________CUUUG__CG__UUCGUUCUUCG_UGA\n3'-UUU...CCCUA_____AA__AA_______________AUUUU...CAA-5'\n_____________|__________________________|\n_____________61_________________________35\n |
130 -- 136 |
39 -- 45 |
-24.6059 kcal/mol |
9.08429 kcal/mol |
6.24973 kcal/mol |
115 141@LB@ | |@LB@5'-UAG...CGCCA A AA C GAAUU...CUC-3'@LB@ GGAAC GC GAGCAGGAAGC GCU@LB@ |:||| || :||||:||||| :||@LB@ CUUUG CG UUCGUUCUUCG UGA@LB@3'-UUU...CCCUA AA AA AUUUU...CAA-5'@LB@ | |@LB@ 61 35@LB@@LB@@LB@Energy -9.27 kcal/mol@LB@Hybridization Energy -24.6059 kcal/mol@LB@Unfolding Energy - mRNA 9.08429 kcal/mol@LB@Unfolding Energy - sRNA 6.24973 kcal/mol@LB@@LB@Position - mRNA 116 -- 140@LB@Position - sRNA 36 -- 60@LB@Position Seed - mRNA 130 -- 136@LB@Position Seed - sRNA 39 -- 45@LB@ |
100 |
0.007523 |
0.2423 |
b1744 |
astE |
-9.81 |
0.018546 |
117 -- 135 |
36 -- 53 |
succinylglutamate desuccinylase |
|
_____________116_________________136\n_____________|___________________|\n5'-GGU...GCUGC__GAA______________GGAUG...UGC-3'\n______________GC___GGGCGGGAAGCACU\n______________||___::||::||||||||\n______________CG___UUCGUUCUUCGUGA\n3'-UUU...UUGAA__AA_______________AUUUU...CAA-5'\n_____________|___________________|\n_____________54__________________35\n |
129 -- 135 |
36 -- 42 |
-22.0517 kcal/mol |
6.14291 kcal/mol |
6.10238 kcal/mol |
116 136@LB@ | |@LB@5'-GGU...GCUGC GAA GGAUG...UGC-3'@LB@ GC GGGCGGGAAGCACU@LB@ || ::||::||||||||@LB@ CG UUCGUUCUUCGUGA@LB@3'-UUU...UUGAA AA AUUUU...CAA-5'@LB@ | |@LB@ 54 35@LB@@LB@@LB@Energy -9.81 kcal/mol@LB@Hybridization Energy -22.0517 kcal/mol@LB@Unfolding Energy - mRNA 6.14291 kcal/mol@LB@Unfolding Energy - sRNA 6.10238 kcal/mol@LB@@LB@Position - mRNA 117 -- 135@LB@Position - sRNA 36 -- 53@LB@Position Seed - mRNA 129 -- 135@LB@Position Seed - sRNA 36 -- 42@LB@ |
166 |
0.01873 |
0.3614 |
b0473 |
htpG |
-6.61 |
0.137913 |
119 -- 133 |
26 -- 39 |
protein refolding molecular co-chaperone Hsp90 Hsp70-dependent; heat-shock protein; ATPase |
|
_____________118_____________134\n_____________|_______________|\n5'-UCA...GCUCU_________UU____UCCCU...GUG-3'\n______________CGCUUGAAA__AUUC\n______________|:|||:|||__||||\n______________GUGAAUUUU__UAAG\n3'-UUU...UCUUC_________U_____CAAUG...CAA-5'\n_____________|_______________|\n_____________40______________25\n |
121 -- 127 |
31 -- 37 |
-10.0825 kcal/mol |
1.82368 kcal/mol |
1.64668 kcal/mol |
118 134@LB@ | |@LB@5'-UCA...GCUCU UU UCCCU...GUG-3'@LB@ CGCUUGAAA AUUC@LB@ |:|||:||| ||||@LB@ GUGAAUUUU UAAG@LB@3'-UUU...UCUUC U CAAUG...CAA-5'@LB@ | |@LB@ 40 25@LB@@LB@@LB@Energy -6.61 kcal/mol@LB@Hybridization Energy -10.0825 kcal/mol@LB@Unfolding Energy - mRNA 1.82368 kcal/mol@LB@Unfolding Energy - sRNA 1.64668 kcal/mol@LB@@LB@Position - mRNA 119 -- 133@LB@Position - sRNA 26 -- 39@LB@Position Seed - mRNA 121 -- 127@LB@Position Seed - sRNA 31 -- 37@LB@ |
199 |
0.02405 |
0.3893 |
b2412 |
zipA |
-4.86 |
0.342002 |
121 -- 136 |
25 -- 40 |
FtsZ stabilizer |
|
_____________120______________137\n_____________|________________|\n5'-CAG...CACUU__________UAA___GCAAA...CUU-3'\n______________GCACUUGAGG___UCG\n______________||||||:|::___|||\n______________CGUGAAUUUU___AGC\n3'-UUU...UUCUU__________UUA___AAUGU...CAA-5'\n_____________|________________|\n_____________41_______________24\n |
124 -- 130 |
31 -- 37 |
-13.2366 kcal/mol |
6.7246 kcal/mol |
1.64821 kcal/mol |
120 137@LB@ | |@LB@5'-CAG...CACUU UAA GCAAA...CUU-3'@LB@ GCACUUGAGG UCG@LB@ ||||||:|:: |||@LB@ CGUGAAUUUU AGC@LB@3'-UUU...UUCUU UUA AAUGU...CAA-5'@LB@ | |@LB@ 41 24@LB@@LB@@LB@Energy -4.86 kcal/mol@LB@Hybridization Energy -13.2366 kcal/mol@LB@Unfolding Energy - mRNA 6.7246 kcal/mol@LB@Unfolding Energy - sRNA 1.64821 kcal/mol@LB@@LB@Position - mRNA 121 -- 136@LB@Position - sRNA 25 -- 40@LB@Position Seed - mRNA 124 -- 130@LB@Position Seed - sRNA 31 -- 37@LB@ |
54 |
0.002706 |
0.1597 |
b0200 |
gmhB |
-8.11 |
0.056337 |
123 -- 141 |
35 -- 53 |
D D-heptose 1 7-bisphosphate phosphatase |
|
_____________122_________________142\n_____________|___________________|\n5'-AAA...AUCAG_____U____A________UCUUG...ACG-3'\n______________GUUUA_GCGA_GAGCACUU\n______________|:|||_||:|_:|||||||\n______________CGAAU_CGUU_UUCGUGAA\n3'-UUU...UUGAA_____U____C________UUUUU...CAA-5'\n_____________|___________________|\n_____________54__________________34\n |
135 -- 141 |
35 -- 41 |
-19.8402 kcal/mol |
5.62708 kcal/mol |
6.10399 kcal/mol |
122 142@LB@ | |@LB@5'-AAA...AUCAG U A UCUUG...ACG-3'@LB@ GUUUA GCGA GAGCACUU@LB@ |:||| ||:| :|||||||@LB@ CGAAU CGUU UUCGUGAA@LB@3'-UUU...UUGAA U C UUUUU...CAA-5'@LB@ | |@LB@ 54 34@LB@@LB@@LB@Energy -8.11 kcal/mol@LB@Hybridization Energy -19.8402 kcal/mol@LB@Unfolding Energy - mRNA 5.62708 kcal/mol@LB@Unfolding Energy - sRNA 6.10399 kcal/mol@LB@@LB@Position - mRNA 123 -- 141@LB@Position - sRNA 35 -- 53@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 35 -- 41@LB@ |
168 |
0.01885 |
0.3614 |
b1792 |
yeaO |
-5.97 |
0.195997 |
133 -- 142 |
25 -- 34 |
DUF488 family protein |
|
_____________132________143\n_____________|__________|\n5'-UGU...AGACA__________CUAAU...CCG-3'\n______________AAGAAAUUCG\n______________||:|||||||\n______________UUUUUUAAGC\n3'-UUU...GUGAA__________AAUGU...CAA-5'\n_____________|__________|\n_____________35_________24\n |
136 -- 142 |
25 -- 31 |
-8.43117 kcal/mol |
1.28773 kcal/mol |
1.16883 kcal/mol |
132 143@LB@ | |@LB@5'-UGU...AGACA CUAAU...CCG-3'@LB@ AAGAAAUUCG@LB@ ||:|||||||@LB@ UUUUUUAAGC@LB@3'-UUU...GUGAA AAUGU...CAA-5'@LB@ | |@LB@ 35 24@LB@@LB@@LB@Energy -5.97 kcal/mol@LB@Hybridization Energy -8.43117 kcal/mol@LB@Unfolding Energy - mRNA 1.28773 kcal/mol@LB@Unfolding Energy - sRNA 1.16883 kcal/mol@LB@@LB@Position - mRNA 133 -- 142@LB@Position - sRNA 25 -- 34@LB@Position Seed - mRNA 136 -- 142@LB@Position Seed - sRNA 25 -- 31@LB@ |
160 |
0.01746 |
0.3504 |
b4542 |
yohO |
-11.65 |
0.004993 |
133 -- 150 |
23 -- 41 |
putative membrane protein |
|
_____________132_________________151\n_____________|___________________|\n5'-UCG...CACUC_________U_________AACAA...GUG-3'\n______________GGCAUUUAA__GAUUCGUU\n______________:|||:||||__:|||||||\n______________UCGUGAAUU__UUAAGCAA\n3'-UUU...GUUCU_________UU________UGUGG...CAA-5'\n_____________|___________________|\n_____________42__________________22\n |
144 -- 150 |
23 -- 29 |
-16.4387 kcal/mol |
3.13759 kcal/mol |
1.64896 kcal/mol |
132 151@LB@ | |@LB@5'-UCG...CACUC U AACAA...GUG-3'@LB@ GGCAUUUAA GAUUCGUU@LB@ :|||:|||| :|||||||@LB@ UCGUGAAUU UUAAGCAA@LB@3'-UUU...GUUCU UU UGUGG...CAA-5'@LB@ | |@LB@ 42 22@LB@@LB@@LB@Energy -11.65 kcal/mol@LB@Hybridization Energy -16.4387 kcal/mol@LB@Unfolding Energy - mRNA 3.13759 kcal/mol@LB@Unfolding Energy - sRNA 1.64896 kcal/mol@LB@@LB@Position - mRNA 133 -- 150@LB@Position - sRNA 23 -- 41@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 23 -- 29@LB@ |
99 |
0.007347 |
0.239 |
b4348 |
hsdS |
-4.18 |
0.460078 |
133 -- 139 |
70 -- 76 |
specificity determinant for hsdM and hsdR |
|
_____________132_____140\n_____________|_______|\n5'-CUG...GUGAA_______CGAGC...UAA-3'\n______________CUGGGGG\n______________|||:|||\n______________GACUCCC\n3'-UUU...GCUGG_______CCAGC...CAA-5'\n_____________|_______|\n_____________77______69\n |
133 -- 139 |
70 -- 76 |
-10.3039 kcal/mol |
2.51492 kcal/mol |
3.60488 kcal/mol |
132 140@LB@ | |@LB@5'-CUG...GUGAA CGAGC...UAA-3'@LB@ CUGGGGG@LB@ |||:|||@LB@ GACUCCC@LB@3'-UUU...GCUGG CCAGC...CAA-5'@LB@ | |@LB@ 77 69@LB@@LB@@LB@Energy -4.18 kcal/mol@LB@Hybridization Energy -10.3039 kcal/mol@LB@Unfolding Energy - mRNA 2.51492 kcal/mol@LB@Unfolding Energy - sRNA 3.60488 kcal/mol@LB@@LB@Position - mRNA 133 -- 139@LB@Position - sRNA 70 -- 76@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 70 -- 76@LB@ |
106 |
0.009044 |
0.2693 |
b3360 |
pabA |
-9.65 |
0.020637 |
134 -- 165 |
7 -- 41 |
aminodeoxychorismate synthase subunit II |
|
_____________133_________________________________166\n_____________|___________________________________|\n5'-GCG...UAUUU____AAGUGGUAAG___AA________________GUAAA...CGU-3'\n______________AGCA___________CG____GCCGGGGAAUCUGA\n______________||||___________||____:||:||:|||||||\n______________UCGU___________GC____UGGUCCUUUAGACU\n3'-UUU...GUUCU____GAAUUUUUUAA__AAUG______________ACACAA-5'\n_____________|___________________________________|\n_____________42__________________________________6\n |
156 -- 162 |
10 -- 16 |
-26.3396 kcal/mol |
7.46958 kcal/mol |
9.22092 kcal/mol |
133 166@LB@ | |@LB@5'-GCG...UAUUU AAGUGGUAAG AA GUAAA...CGU-3'@LB@ AGCA CG GCCGGGGAAUCUGA@LB@ |||| || :||:||:|||||||@LB@ UCGU GC UGGUCCUUUAGACU@LB@3'-UUU...GUUCU GAAUUUUUUAA AAUG ACACAA-5'@LB@ | |@LB@ 42 6@LB@@LB@@LB@Energy -9.65 kcal/mol@LB@Hybridization Energy -26.3396 kcal/mol@LB@Unfolding Energy - mRNA 7.46958 kcal/mol@LB@Unfolding Energy - sRNA 9.22092 kcal/mol@LB@@LB@Position - mRNA 134 -- 165@LB@Position - sRNA 7 -- 41@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 10 -- 16@LB@ |
86 |
0.005829 |
0.217 |
b2399 |
yfeD |
-9.44 |
0.023742 |
136 -- 182 |
13 -- 56 |
DUF1323 family putative DNA-binding protein |
|
_____________135______________________________________________183\n_____________|________________________________________________|\n5'-UGA...ACAUC_______CU________G_A___UC____________ACGC_______UUCGC...GGA-3'\n______________CUUGCUU__GCGGGAAG_G_UUA__GGAUU_GUUACA____UUAGGGA\n______________|||||||__||::||||_:_|||__::|||_||||||____::|||:|\n______________GAACGAA__CGUUCUUC_U_AAU__UUUAA_CAAUGU____GGUCCUU\n3'-UUU...ACUUU_______UU________G_G___UU_____G_________________UAGAC...CAA-5'\n_____________|________________________________________________|\n_____________57_______________________________________________12\n |
146 -- 152 |
40 -- 46 |
-35.8501 kcal/mol |
12.5789 kcal/mol |
13.8302 kcal/mol |
135 183@LB@ | |@LB@5'-UGA...ACAUC CU G A UC ACGC UUCGC...GGA-3'@LB@ CUUGCUU GCGGGAAG G UUA GGAUU GUUACA UUAGGGA@LB@ ||||||| ||::|||| : ||| ::||| |||||| ::|||:|@LB@ GAACGAA CGUUCUUC U AAU UUUAA CAAUGU GGUCCUU@LB@3'-UUU...ACUUU UU G G UU G UAGAC...CAA-5'@LB@ | |@LB@ 57 12@LB@@LB@@LB@Energy -9.44 kcal/mol@LB@Hybridization Energy -35.8501 kcal/mol@LB@Unfolding Energy - mRNA 12.5789 kcal/mol@LB@Unfolding Energy - sRNA 13.8302 kcal/mol@LB@@LB@Position - mRNA 136 -- 182@LB@Position - sRNA 13 -- 56@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 40 -- 46@LB@ |
125 |
0.01132 |
0.2916 |
b4152 |
frdC |
-8.74 |
0.037729 |
137 -- 154 |
25 -- 41 |
fumarate reductase (anaerobic) membrane anchor subunit |
|
_____________136________________155\n_____________|__________________|\n5'-AGA...AGCAG____AAG___________AAAGA...CGG-3'\n______________GGCA___UAGAAAGUUCG\n______________:|||___||:|||:||||\n______________UCGU___AUUUUUUAAGC\n3'-UUU...GUUCU____GA____________AAUGU...CAA-5'\n_____________|__________________|\n_____________42_________________24\n |
148 -- 154 |
25 -- 31 |
-13.3883 kcal/mol |
3.00162 kcal/mol |
1.64839 kcal/mol |
136 155@LB@ | |@LB@5'-AGA...AGCAG AAG AAAGA...CGG-3'@LB@ GGCA UAGAAAGUUCG@LB@ :||| ||:|||:||||@LB@ UCGU AUUUUUUAAGC@LB@3'-UUU...GUUCU GA AAUGU...CAA-5'@LB@ | |@LB@ 42 24@LB@@LB@@LB@Energy -8.74 kcal/mol@LB@Hybridization Energy -13.3883 kcal/mol@LB@Unfolding Energy - mRNA 3.00162 kcal/mol@LB@Unfolding Energy - sRNA 1.64839 kcal/mol@LB@@LB@Position - mRNA 137 -- 154@LB@Position - sRNA 25 -- 41@LB@Position Seed - mRNA 148 -- 154@LB@Position Seed - sRNA 25 -- 31@LB@ |
126 |
0.01159 |
0.2964 |
b3693 |
dgoK |
-8.44 |
0.045823 |
138 -- 160 |
34 -- 54 |
2-oxo-3-deoxygalactonate kinase |
|
_____________137_____________________161\n_____________|_______________________|\n5'-CAG...GGCGA___GGCA_______C________CCAUG...CAG-3'\n______________UGC____GAGCAGG_GGCGCUUA\n______________|||____:||||:|_:||:||||\n______________ACG____UUCGUUC_UCGUGAAU\n3'-UUU...UUUGA___AA_________U________UUUUU...CAA-5'\n_____________|_______________________|\n_____________55______________________33\n |
154 -- 160 |
34 -- 40 |
-23.026 kcal/mol |
8.41527 kcal/mol |
6.17478 kcal/mol |
137 161@LB@ | |@LB@5'-CAG...GGCGA GGCA C CCAUG...CAG-3'@LB@ UGC GAGCAGG GGCGCUUA@LB@ ||| :||||:| :||:||||@LB@ ACG UUCGUUC UCGUGAAU@LB@3'-UUU...UUUGA AA U UUUUU...CAA-5'@LB@ | |@LB@ 55 33@LB@@LB@@LB@Energy -8.44 kcal/mol@LB@Hybridization Energy -23.026 kcal/mol@LB@Unfolding Energy - mRNA 8.41527 kcal/mol@LB@Unfolding Energy - sRNA 6.17478 kcal/mol@LB@@LB@Position - mRNA 138 -- 160@LB@Position - sRNA 34 -- 54@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 34 -- 40@LB@ |
149 |
0.01515 |
0.3274 |
b4196 |
ulaD |
-9.50 |
0.022893 |
140 -- 153 |
36 -- 49 |
3-keto-L-gulonate 6-phosphate decarboxylase |
|
_____________139____________154\n_____________|______________|\n5'-CGA...GUACC______________GGAUC...AAG-3'\n______________GAGCAGGAAGUACU\n______________:||||:||||:|||\n______________UUCGUUCUUCGUGA\n3'-UUU...ACGAA______________AUUUU...CAA-5'\n_____________|______________|\n_____________50_____________35\n |
147 -- 153 |
36 -- 42 |
-21.0071 kcal/mol |
5.47534 kcal/mol |
6.03645 kcal/mol |
139 154@LB@ | |@LB@5'-CGA...GUACC GGAUC...AAG-3'@LB@ GAGCAGGAAGUACU@LB@ :||||:||||:|||@LB@ UUCGUUCUUCGUGA@LB@3'-UUU...ACGAA AUUUU...CAA-5'@LB@ | |@LB@ 50 35@LB@@LB@@LB@Energy -9.50 kcal/mol@LB@Hybridization Energy -21.0071 kcal/mol@LB@Unfolding Energy - mRNA 5.47534 kcal/mol@LB@Unfolding Energy - sRNA 6.03645 kcal/mol@LB@@LB@Position - mRNA 140 -- 153@LB@Position - sRNA 36 -- 49@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 36 -- 42@LB@ |
169 |
0.01902 |
0.3625 |
b0858 |
ybjO |
-5.59 |
0.239654 |
140 -- 156 |
25 -- 43 |
DUF2593 family inner membrane protein |
|
_____________139__________________157\n_____________|____________________|\n5'-AUG...UGGCU____A_______________CCAAC...UUA-3'\n______________GAAG_CACU___AAAAUUUG\n______________||||_||||___||||||:|\n______________CUUC_GUGA___UUUUAAGC\n3'-UUU...UCGUU_________AUU________AAUGU...CAA-5'\n_____________|____________________|\n_____________44___________________24\n |
150 -- 156 |
25 -- 31 |
-11.6219 kcal/mol |
2.26879 kcal/mol |
3.76226 kcal/mol |
139 157@LB@ | |@LB@5'-AUG...UGGCU A CCAAC...UUA-3'@LB@ GAAG CACU AAAAUUUG@LB@ |||| |||| ||||||:|@LB@ CUUC GUGA UUUUAAGC@LB@3'-UUU...UCGUU AUU AAUGU...CAA-5'@LB@ | |@LB@ 44 24@LB@@LB@@LB@Energy -5.59 kcal/mol@LB@Hybridization Energy -11.6219 kcal/mol@LB@Unfolding Energy - mRNA 2.26879 kcal/mol@LB@Unfolding Energy - sRNA 3.76226 kcal/mol@LB@@LB@Position - mRNA 140 -- 156@LB@Position - sRNA 25 -- 43@LB@Position Seed - mRNA 150 -- 156@LB@Position Seed - sRNA 25 -- 31@LB@ |
67 |
0.003475 |
0.1645 |
b0416 |
nusB |
-6.41 |
0.154688 |
140 -- 154 |
27 -- 40 |
transcription antitermination protein |
|
_____________139_____________155\n_____________|_______________|\n5'-AAG...UGACC__________U____AAUGU...AGU-3'\n______________GCGCUUGAAA_GAUU\n______________||:|||:|||_:|||\n______________CGUGAAUUUU_UUAA\n3'-UUU...UUCUU_______________GCAAU...CAA-5'\n_____________|_______________|\n_____________41______________26\n |
142 -- 148 |
32 -- 38 |
-12.213 kcal/mol |
4.16264 kcal/mol |
1.6425 kcal/mol |
139 155@LB@ | |@LB@5'-AAG...UGACC U AAUGU...AGU-3'@LB@ GCGCUUGAAA GAUU@LB@ ||:|||:||| :|||@LB@ CGUGAAUUUU UUAA@LB@3'-UUU...UUCUU GCAAU...CAA-5'@LB@ | |@LB@ 41 26@LB@@LB@@LB@Energy -6.41 kcal/mol@LB@Hybridization Energy -12.213 kcal/mol@LB@Unfolding Energy - mRNA 4.16264 kcal/mol@LB@Unfolding Energy - sRNA 1.6425 kcal/mol@LB@@LB@Position - mRNA 140 -- 154@LB@Position - sRNA 27 -- 40@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 32 -- 38@LB@ |
88 |
0.006209 |
0.2266 |
b1643 |
ydhI |
-11.55 |
0.005389 |
141 -- 153 |
28 -- 40 |
DUF1656 family putative inner membrane efflux pump associated protein |
|
_____________140___________154\n_____________|_____________|\n5'-UUU...UUUUC_____________AUUUA...GAU-3'\n______________GCACUUAAAGAAU\n______________|||||||||:|||\n______________CGUGAAUUUUUUA\n3'-UUU...UUCUU_____________AGCAA...CAA-5'\n_____________|_____________|\n_____________41____________27\n |
144 -- 150 |
31 -- 37 |
-15.2864 kcal/mol |
2.10141 kcal/mol |
1.63611 kcal/mol |
140 154@LB@ | |@LB@5'-UUU...UUUUC AUUUA...GAU-3'@LB@ GCACUUAAAGAAU@LB@ |||||||||:|||@LB@ CGUGAAUUUUUUA@LB@3'-UUU...UUCUU AGCAA...CAA-5'@LB@ | |@LB@ 41 27@LB@@LB@@LB@Energy -11.55 kcal/mol@LB@Hybridization Energy -15.2864 kcal/mol@LB@Unfolding Energy - mRNA 2.10141 kcal/mol@LB@Unfolding Energy - sRNA 1.63611 kcal/mol@LB@@LB@Position - mRNA 141 -- 153@LB@Position - sRNA 28 -- 40@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 31 -- 37@LB@ |
60 |
0.00317 |
0.1645 |
b0466 |
ybaM |
-6.37 |
0.157728 |
143 -- 158 |
25 -- 40 |
DUF2496 family protein |
|
_____________142_______________159\n_____________|_________________|\n5'-GCA...GCCAU_____GG__________AAAAC...CGC-3'\n______________GCGCU__AAAAAAU_CG\n______________||:||__|||||||_||\n______________CGUGA__UUUUUUA_GC\n3'-UUU...UUCUU_____A________A__AAUGU...CAA-5'\n_____________|_________________|\n_____________41________________24\n |
150 -- 156 |
28 -- 34 |
-11.3444 kcal/mol |
3.32327 kcal/mol |
1.64821 kcal/mol |
142 159@LB@ | |@LB@5'-GCA...GCCAU GG AAAAC...CGC-3'@LB@ GCGCU AAAAAAU CG@LB@ ||:|| ||||||| ||@LB@ CGUGA UUUUUUA GC@LB@3'-UUU...UUCUU A A AAUGU...CAA-5'@LB@ | |@LB@ 41 24@LB@@LB@@LB@Energy -6.37 kcal/mol@LB@Hybridization Energy -11.3444 kcal/mol@LB@Unfolding Energy - mRNA 3.32327 kcal/mol@LB@Unfolding Energy - sRNA 1.64821 kcal/mol@LB@@LB@Position - mRNA 143 -- 158@LB@Position - sRNA 25 -- 40@LB@Position Seed - mRNA 150 -- 156@LB@Position Seed - sRNA 28 -- 34@LB@ |
49 |
0.002267 |
0.1465 |
b0592 |
fepB |
-6.35 |
0.159662 |
143 -- 160 |
24 -- 40 |
ferrienterobactin ABC transporter periplasmic binding protein |
|
_____________142________________161\n_____________|__________________|\n5'-AUA...AUUGU______UGUC________CAUUA...UUA-3'\n______________GCGCUU____GAAUUUGU\n______________||:|||____:||||:||\n______________CGUGAA____UUUAAGCA\n3'-UUU...UUCUU______UUU_________AUGUG...CAA-5'\n_____________|__________________|\n_____________41_________________23\n |
154 -- 160 |
24 -- 30 |
-12.773 kcal/mol |
4.77335 kcal/mol |
1.64869 kcal/mol |
142 161@LB@ | |@LB@5'-AUA...AUUGU UGUC CAUUA...UUA-3'@LB@ GCGCUU GAAUUUGU@LB@ ||:||| :||||:||@LB@ CGUGAA UUUAAGCA@LB@3'-UUU...UUCUU UUU AUGUG...CAA-5'@LB@ | |@LB@ 41 23@LB@@LB@@LB@Energy -6.35 kcal/mol@LB@Hybridization Energy -12.773 kcal/mol@LB@Unfolding Energy - mRNA 4.77335 kcal/mol@LB@Unfolding Energy - sRNA 1.64869 kcal/mol@LB@@LB@Position - mRNA 143 -- 160@LB@Position - sRNA 24 -- 40@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 24 -- 30@LB@ |
190 |
0.02239 |
0.3796 |
b0724 |
sdhB |
-6.89 |
0.117799 |
143 -- 176 |
24 -- 60 |
succinate dehydrogenase FeS subunit |
|
_____________142____________________________________177\n_____________|______________________________________|\n5'-UUU...GAACC_________GCCC____UUCC____C____________ACUUA...UGA-3'\n______________GAAAC_UGC____GGCA_____CGC___GAAGAUUCGU\n______________|||||_|||____:|||_____|:|___:||:||||||\n______________CUUUG_ACG____UCGU_____GUG___UUUUUAAGCA\n3'-UUU...CCCUA_____A___AAU_____UCUUC___AAU__________AUGUG...CAA-5'\n_____________|______________________________________|\n_____________61_____________________________________23\n |
170 -- 176 |
24 -- 30 |
-22.9017 kcal/mol |
9.73835 kcal/mol |
6.27609 kcal/mol |
142 177@LB@ | |@LB@5'-UUU...GAACC GCCC UUCC C ACUUA...UGA-3'@LB@ GAAAC UGC GGCA CGC GAAGAUUCGU@LB@ ||||| ||| :||| |:| :||:||||||@LB@ CUUUG ACG UCGU GUG UUUUUAAGCA@LB@3'-UUU...CCCUA A AAU UCUUC AAU AUGUG...CAA-5'@LB@ | |@LB@ 61 23@LB@@LB@@LB@Energy -6.89 kcal/mol@LB@Hybridization Energy -22.9017 kcal/mol@LB@Unfolding Energy - mRNA 9.73835 kcal/mol@LB@Unfolding Energy - sRNA 6.27609 kcal/mol@LB@@LB@Position - mRNA 143 -- 176@LB@Position - sRNA 24 -- 60@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 24 -- 30@LB@ |
110 |
0.009505 |
0.2693 |
b0632 |
dacA |
-12.82 |
0.002052 |
146 -- 175 |
26 -- 57 |
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) |
|
_____________145______________________________176\n_____________|________________________________|\n5'-CCU...AGUGC_______AU______________UUUU_____CAUCA...AUA-3'\n______________AUUUGCU__AGUAGG__GCACUU____AAUUC\n______________|:|||||__||:|:|__||||||____|||||\n______________UGAACGA__UCGUUC__CGUGAA____UUAAG\n3'-UUU...UACUU_______AU______UU______UUUU_____CAAUG...CAA-5'\n_____________|________________________________|\n_____________58_______________________________25\n |
146 -- 152 |
51 -- 57 |
-23.8315 kcal/mol |
4.73353 kcal/mol |
6.27605 kcal/mol |
145 176@LB@ | |@LB@5'-CCU...AGUGC AU UUUU CAUCA...AUA-3'@LB@ AUUUGCU AGUAGG GCACUU AAUUC@LB@ |:||||| ||:|:| |||||| |||||@LB@ UGAACGA UCGUUC CGUGAA UUAAG@LB@3'-UUU...UACUU AU UU UUUU CAAUG...CAA-5'@LB@ | |@LB@ 58 25@LB@@LB@@LB@Energy -12.82 kcal/mol@LB@Hybridization Energy -23.8315 kcal/mol@LB@Unfolding Energy - mRNA 4.73353 kcal/mol@LB@Unfolding Energy - sRNA 6.27605 kcal/mol@LB@@LB@Position - mRNA 146 -- 175@LB@Position - sRNA 26 -- 57@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 51 -- 57@LB@ |
146 |
0.01469 |
0.3231 |
b0026 |
ileS |
-7.82 |
0.067581 |
147 -- 206 |
2 -- 59 |
isoleucyl-tRNA synthetase |
|
_____________146_____________________________________________________________207\n_____________|_______________________________________________________________|\n5'-AUG...UAACA____CG________CU_UUAU___AUCAAACC_____A__GA______A___________A__GACUA...CUG-3'\n______________AAAC__GCUUAAGC__G____GUA________GAAAU_CG____ACCG__GAAUCUGAUG_GU\n______________||||__||||||||__|____|:|________:||||_||____|||:__:|||||||||_||\n______________UUUG__CGAAUUCG__C____CGU________UUUUA_GC____UGGU__UUUAGACUAC_CA\n3'-UUU...CCUAC____AA________UU_UU_____GAAUU________A__AAUG____CC__________A__A-5'\n_____________|_______________________________________________________________|\n_____________60______________________________________________________________1\n |
197 -- 203 |
5 -- 11 |
-33.6314 kcal/mol |
11.9684 kcal/mol |
13.8468 kcal/mol |
146 207@LB@ | |@LB@5'-AUG...UAACA CG CU UUAU AUCAAACC A GA A A GACUA...CUG-3'@LB@ AAAC GCUUAAGC G GUA GAAAU CG ACCG GAAUCUGAUG GU@LB@ |||| |||||||| | |:| :|||| || |||: :||||||||| ||@LB@ UUUG CGAAUUCG C CGU UUUUA GC UGGU UUUAGACUAC CA@LB@3'-UUU...CCUAC AA UU UU GAAUU A AAUG CC A A-5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -7.82 kcal/mol@LB@Hybridization Energy -33.6314 kcal/mol@LB@Unfolding Energy - mRNA 11.9684 kcal/mol@LB@Unfolding Energy - sRNA 13.8468 kcal/mol@LB@@LB@Position - mRNA 147 -- 206@LB@Position - sRNA 2 -- 59@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 5 -- 11@LB@ |
77 |
0.004637 |
0.1935 |
b0407 |
yajC |
-7.39 |
0.087827 |
147 -- 158 |
37 -- 48 |
SecYEG protein translocase auxillary subunit |
|
_____________146__________159\n_____________|____________|\n5'-UCU...UCAGG____________CACCU...UUU-3'\n______________GGCGAGAAGUAC\n______________:||:|||||:||\n______________UCGUUCUUCGUG\n3'-UUU...CGAAU____________AAUUU...CAA-5'\n_____________|____________|\n_____________49___________36\n |
152 -- 158 |
37 -- 43 |
-17.5904 kcal/mol |
4.37033 kcal/mol |
5.83483 kcal/mol |
146 159@LB@ | |@LB@5'-UCU...UCAGG CACCU...UUU-3'@LB@ GGCGAGAAGUAC@LB@ :||:|||||:||@LB@ UCGUUCUUCGUG@LB@3'-UUU...CGAAU AAUUU...CAA-5'@LB@ | |@LB@ 49 36@LB@@LB@@LB@Energy -7.39 kcal/mol@LB@Hybridization Energy -17.5904 kcal/mol@LB@Unfolding Energy - mRNA 4.37033 kcal/mol@LB@Unfolding Energy - sRNA 5.83483 kcal/mol@LB@@LB@Position - mRNA 147 -- 158@LB@Position - sRNA 37 -- 48@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 37 -- 43@LB@ |
197 |
0.0237 |
0.3864 |
b4001 |
yjaH |
-6.58 |
0.140477 |
149 -- 175 |
29 -- 57 |
DUF1481 family putative lipoprotein |
|
_____________148____________________________176\n_____________|______________________________|\n5'-UGG...CCGGC________CU____________________CGCAG...AUA-3'\n______________AUUUGUUU__GGCA__AGGCACU_GAAAGA\n______________|:|||:||__:|||__|:|||||_:|||:|\n______________UGAACGAA__UCGU__UUCGUGA_UUUUUU\n3'-UUU...UACUU________U_____UC_______A______AAGCA...CAA-5'\n_____________|______________________________|\n_____________58_____________________________28\n |
163 -- 169 |
36 -- 42 |
-19.7163 kcal/mol |
6.91297 kcal/mol |
6.22375 kcal/mol |
148 176@LB@ | |@LB@5'-UGG...CCGGC CU CGCAG...AUA-3'@LB@ AUUUGUUU GGCA AGGCACU GAAAGA@LB@ |:|||:|| :||| |:||||| :|||:|@LB@ UGAACGAA UCGU UUCGUGA UUUUUU@LB@3'-UUU...UACUU U UC A AAGCA...CAA-5'@LB@ | |@LB@ 58 28@LB@@LB@@LB@Energy -6.58 kcal/mol@LB@Hybridization Energy -19.7163 kcal/mol@LB@Unfolding Energy - mRNA 6.91297 kcal/mol@LB@Unfolding Energy - sRNA 6.22375 kcal/mol@LB@@LB@Position - mRNA 149 -- 175@LB@Position - sRNA 29 -- 57@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 36 -- 42@LB@ |
16 |
0.0003675 |
0.07398 |
b0566 |
envY |
-6.67 |
0.133095 |
149 -- 159 |
37 -- 47 |
porin thermoregulatory transcriptional activator |
b1499 b0564 b3515 b4116 b3516 |
_____________148_________160\n_____________|___________|\n5'-GGC...CUCAU___________AGAUC...ACU-3'\n______________GCAGGAAGCAU\n______________|||:||||||:\n______________CGUUCUUCGUG\n3'-UUU...GAAUU___________AAUUU...CAA-5'\n_____________|___________|\n_____________48__________36\n |
153 -- 159 |
37 -- 43 |
-16.6622 kcal/mol |
4.74809 kcal/mol |
5.23944 kcal/mol |
148 160@LB@ | |@LB@5'-GGC...CUCAU AGAUC...ACU-3'@LB@ GCAGGAAGCAU@LB@ |||:||||||:@LB@ CGUUCUUCGUG@LB@3'-UUU...GAAUU AAUUU...CAA-5'@LB@ | |@LB@ 48 36@LB@@LB@@LB@Energy -6.67 kcal/mol@LB@Hybridization Energy -16.6622 kcal/mol@LB@Unfolding Energy - mRNA 4.74809 kcal/mol@LB@Unfolding Energy - sRNA 5.23944 kcal/mol@LB@@LB@Position - mRNA 149 -- 159@LB@Position - sRNA 37 -- 47@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 37 -- 43@LB@ |
7 |
4.438e-05 |
0.02042 |
b0794 |
ybhF |
-10.77 |
0.009494 |
150 -- 165 |
11 -- 26 |
putative ABC transporter ATPase |
|
_____________149______________166\n_____________|________________|\n5'-UAC...UGAUG________________GCCAG...GUU-3'\n______________CGUUACGCCAGGGAAU\n______________||||||:|||||:|||\n______________GCAAUGUGGUCCUUUA\n3'-UUU...UUUAA________________GACUA...CAA-5'\n_____________|________________|\n_____________27_______________10\n |
157 -- 163 |
13 -- 19 |
-25.1629 kcal/mol |
6.0475 kcal/mol |
8.34814 kcal/mol |
149 166@LB@ | |@LB@5'-UAC...UGAUG GCCAG...GUU-3'@LB@ CGUUACGCCAGGGAAU@LB@ ||||||:|||||:|||@LB@ GCAAUGUGGUCCUUUA@LB@3'-UUU...UUUAA GACUA...CAA-5'@LB@ | |@LB@ 27 10@LB@@LB@@LB@Energy -10.77 kcal/mol@LB@Hybridization Energy -25.1629 kcal/mol@LB@Unfolding Energy - mRNA 6.0475 kcal/mol@LB@Unfolding Energy - sRNA 8.34814 kcal/mol@LB@@LB@Position - mRNA 150 -- 165@LB@Position - sRNA 11 -- 26@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 13 -- 19@LB@ |
147 |
0.01475 |
0.3231 |
b0084 |
ftsI |
-4.75 |
0.360226 |
157 -- 172 |
24 -- 39 |
transpeptidase involved in septal peptidoglycan synthesis; penicillin-binding protein 3 |
|
_____________156_______________173\n_____________|_________________|\n5'-GUU...UCCGU___A________A____AGUGC...UGG-3'\n______________CAC__AGAAAAU_UCGU\n______________|||__|:|||||_||||\n______________GUG__UUUUUUA_AGCA\n3'-UUU...UCUUC___AA____________AUGUG...CAA-5'\n_____________|_________________|\n_____________40________________23\n |
161 -- 167 |
28 -- 34 |
-7.76704 kcal/mol |
1.36905 kcal/mol |
1.64726 kcal/mol |
156 173@LB@ | |@LB@5'-GUU...UCCGU A A AGUGC...UGG-3'@LB@ CAC AGAAAAU UCGU@LB@ ||| |:||||| ||||@LB@ GUG UUUUUUA AGCA@LB@3'-UUU...UCUUC AA AUGUG...CAA-5'@LB@ | |@LB@ 40 23@LB@@LB@@LB@Energy -4.75 kcal/mol@LB@Hybridization Energy -7.76704 kcal/mol@LB@Unfolding Energy - mRNA 1.36905 kcal/mol@LB@Unfolding Energy - sRNA 1.64726 kcal/mol@LB@@LB@Position - mRNA 157 -- 172@LB@Position - sRNA 24 -- 39@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 28 -- 34@LB@ |
25 |
0.0007384 |
0.09021 |
b3434 |
yhgN |
-11.94 |
0.004015 |
159 -- 197 |
7 -- 41 |
UPF0056 family inner membrane protein |
|
_____________158_____________________________________198\n_____________|_______________________________________|\n5'-UUU...UUGUU_____GC_______CCG__GCAAU_______________GUUAU...CGA-3'\n______________AGCAC__AGAAAGU___CG_____UAUCAGGGAAUUUGA\n______________|||||__|:|||:|___||_____:|:||||:|||:|||\n______________UCGUG__UUUUUUA___GC_____GUGGUCCUUUAGACU\n3'-UUU...GUUCU_____AA_______A____AAU_________________ACACAA-5'\n_____________|_______________________________________|\n_____________42______________________________________6\n |
188 -- 194 |
10 -- 16 |
-30.001 kcal/mol |
8.83552 kcal/mol |
9.22092 kcal/mol |
158 198@LB@ | |@LB@5'-UUU...UUGUU GC CCG GCAAU GUUAU...CGA-3'@LB@ AGCAC AGAAAGU CG UAUCAGGGAAUUUGA@LB@ ||||| |:|||:| || :|:||||:|||:|||@LB@ UCGUG UUUUUUA GC GUGGUCCUUUAGACU@LB@3'-UUU...GUUCU AA A AAU ACACAA-5'@LB@ | |@LB@ 42 6@LB@@LB@@LB@Energy -11.94 kcal/mol@LB@Hybridization Energy -30.001 kcal/mol@LB@Unfolding Energy - mRNA 8.83552 kcal/mol@LB@Unfolding Energy - sRNA 9.22092 kcal/mol@LB@@LB@Position - mRNA 159 -- 197@LB@Position - sRNA 7 -- 41@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 10 -- 16@LB@ |
36 |
0.001384 |
0.121 |
b2573 |
rpoE |
-5.96 |
0.197133 |
163 -- 178 |
25 -- 41 |
RNA polymerase sigma E factor |
|
_____________162_______________179\n_____________|_________________|\n5'-ACA...UCGAU_____GU__________GUUUG...UGG-3'\n______________AGCGC___GGAAAUUUG\n______________|||:|___::|||||:|\n______________UCGUG___UUUUUAAGC\n3'-UUU...GUUCU_____AAU_________AAUGU...CAA-5'\n_____________|_________________|\n_____________42________________24\n |
172 -- 178 |
25 -- 31 |
-12.5895 kcal/mol |
4.97735 kcal/mol |
1.64839 kcal/mol |
162 179@LB@ | |@LB@5'-ACA...UCGAU GU GUUUG...UGG-3'@LB@ AGCGC GGAAAUUUG@LB@ |||:| ::|||||:|@LB@ UCGUG UUUUUAAGC@LB@3'-UUU...GUUCU AAU AAUGU...CAA-5'@LB@ | |@LB@ 42 24@LB@@LB@@LB@Energy -5.96 kcal/mol@LB@Hybridization Energy -12.5895 kcal/mol@LB@Unfolding Energy - mRNA 4.97735 kcal/mol@LB@Unfolding Energy - sRNA 1.64839 kcal/mol@LB@@LB@Position - mRNA 163 -- 178@LB@Position - sRNA 25 -- 41@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 25 -- 31@LB@ |
180 |
0.02111 |
0.3768 |
b2753 |
iap |
-4.77 |
0.357003 |
164 -- 179 |
25 -- 40 |
aminopeptidase in alkaline phosphatase isozyme conversion |
|
_____________163______________180\n_____________|________________|\n5'-UAG...CUAUG___G_A__________CAUGG...CUA-3'\n______________GCG_U_AAAAAAUUUG\n______________||:_|_||||||||:|\n______________CGU_A_UUUUUUAAGC\n3'-UUU...UUCUU___G_A__________AAUGU...CAA-5'\n_____________|________________|\n_____________41_______________24\n |
170 -- 176 |
28 -- 34 |
-8.71545 kcal/mol |
2.29678 kcal/mol |
1.64821 kcal/mol |
163 180@LB@ | |@LB@5'-UAG...CUAUG G A CAUGG...CUA-3'@LB@ GCG U AAAAAAUUUG@LB@ ||: | ||||||||:|@LB@ CGU A UUUUUUAAGC@LB@3'-UUU...UUCUU G A AAUGU...CAA-5'@LB@ | |@LB@ 41 24@LB@@LB@@LB@Energy -4.77 kcal/mol@LB@Hybridization Energy -8.71545 kcal/mol@LB@Unfolding Energy - mRNA 2.29678 kcal/mol@LB@Unfolding Energy - sRNA 1.64821 kcal/mol@LB@@LB@Position - mRNA 164 -- 179@LB@Position - sRNA 25 -- 40@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 28 -- 34@LB@ |
28 |
0.0008326 |
0.09021 |
b2563 |
acpS |
-7.40 |
0.086911 |
170 -- 193 |
37 -- 61 |
holo-[acyl-carrier-protein] synthase 1 |
|
_____________169_______________________194\n_____________|_________________________|\n5'-GCC...AGAAA______GU___GAU__U________GUGGC...GCG-3'\n______________UGAAGC___CU___GC_GGAAGCGC\n______________||||:|___||___||_:|||||:|\n______________ACUUUG___GA___CG_UCUUCGUG\n3'-UUU...GCCCU______AAC__AUU__U________AAUUU...CAA-5'\n_____________|_________________________|\n_____________62________________________36\n |
187 -- 193 |
37 -- 43 |
-21.5547 kcal/mol |
6.80255 kcal/mol |
7.3495 kcal/mol |
169 194@LB@ | |@LB@5'-GCC...AGAAA GU GAU U GUGGC...GCG-3'@LB@ UGAAGC CU GC GGAAGCGC@LB@ ||||:| || || :|||||:|@LB@ ACUUUG GA CG UCUUCGUG@LB@3'-UUU...GCCCU AAC AUU U AAUUU...CAA-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -7.40 kcal/mol@LB@Hybridization Energy -21.5547 kcal/mol@LB@Unfolding Energy - mRNA 6.80255 kcal/mol@LB@Unfolding Energy - sRNA 7.3495 kcal/mol@LB@@LB@Position - mRNA 170 -- 193@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 37 -- 43@LB@ |
71 |
0.00365 |
0.1656 |
b4478 |
dgoD |
-6.42 |
0.153775 |
171 -- 195 |
38 -- 57 |
D-galactonate dehydratase |
|
_____________170_______________________196\n_____________|_________________________|\n5'-AAA...GCAGC_______A____GUAUC________GUGCA...UGA-3'\n______________AUUUGUU_AGGC_____GAGAGGCA\n______________|:|||:|_|:||_____:|||:|||\n______________UGAACGA_UUCG_____UUCUUCGU\n3'-UUU...UACUU_______A_________________GAAUU...CAA-5'\n_____________|_________________________|\n_____________58________________________37\n |
189 -- 195 |
38 -- 44 |
-17.6382 kcal/mol |
5.02573 kcal/mol |
6.19395 kcal/mol |
170 196@LB@ | |@LB@5'-AAA...GCAGC A GUAUC GUGCA...UGA-3'@LB@ AUUUGUU AGGC GAGAGGCA@LB@ |:|||:| |:|| :|||:|||@LB@ UGAACGA UUCG UUCUUCGU@LB@3'-UUU...UACUU A GAAUU...CAA-5'@LB@ | |@LB@ 58 37@LB@@LB@@LB@Energy -6.42 kcal/mol@LB@Hybridization Energy -17.6382 kcal/mol@LB@Unfolding Energy - mRNA 5.02573 kcal/mol@LB@Unfolding Energy - sRNA 6.19395 kcal/mol@LB@@LB@Position - mRNA 171 -- 195@LB@Position - sRNA 38 -- 57@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 38 -- 44@LB@ |
196 |
0.02353 |
0.3864 |
b1948 |
fliP |
-9.61 |
0.021211 |
171 -- 185 |
45 -- 59 |
flagellar biosynthesis protein |
|
_____________170_____________186\n_____________|_______________|\n5'-AUU...AUGAA_______________UAGCG...GCG-3'\n______________AAAUUUGCUUAAGCG\n______________|||:||||||||||:\n______________UUUGAACGAAUUCGU\n3'-UUU...CCUAC_______________UCUUC...CAA-5'\n_____________|_______________|\n_____________60______________44\n |
178 -- 184 |
46 -- 52 |
-18.3894 kcal/mol |
2.75936 kcal/mol |
6.02152 kcal/mol |
170 186@LB@ | |@LB@5'-AUU...AUGAA UAGCG...GCG-3'@LB@ AAAUUUGCUUAAGCG@LB@ |||:||||||||||:@LB@ UUUGAACGAAUUCGU@LB@3'-UUU...CCUAC UCUUC...CAA-5'@LB@ | |@LB@ 60 44@LB@@LB@@LB@Energy -9.61 kcal/mol@LB@Hybridization Energy -18.3894 kcal/mol@LB@Unfolding Energy - mRNA 2.75936 kcal/mol@LB@Unfolding Energy - sRNA 6.02152 kcal/mol@LB@@LB@Position - mRNA 171 -- 185@LB@Position - sRNA 45 -- 59@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 46 -- 52@LB@ |
13 |
0.0002543 |
0.06302 |
b3583 |
sgbE |
-8.82 |
0.035786 |
171 -- 191 |
39 -- 61 |
L-ribulose-5-phosphate 4-epimerase |
|
_____________170_____________________192\n_____________|_______________________|\n5'-CAA...UGGAU__________GUAU_________UGGAU...ACG-3'\n______________UGAAGC__GC____GCAGGAGGC\n______________||||:|__||____|||:||:||\n______________ACUUUG__CG____CGUUCUUCG\n3'-UUU...GCCCU______AA__AAUU_________UGAAU...CAA-5'\n_____________|_______________________|\n_____________62______________________38\n |
185 -- 191 |
39 -- 45 |
-21.2799 kcal/mol |
5.20492 kcal/mol |
7.25518 kcal/mol |
170 192@LB@ | |@LB@5'-CAA...UGGAU GUAU UGGAU...ACG-3'@LB@ UGAAGC GC GCAGGAGGC@LB@ ||||:| || |||:||:||@LB@ ACUUUG CG CGUUCUUCG@LB@3'-UUU...GCCCU AA AAUU UGAAU...CAA-5'@LB@ | |@LB@ 62 38@LB@@LB@@LB@Energy -8.82 kcal/mol@LB@Hybridization Energy -21.2799 kcal/mol@LB@Unfolding Energy - mRNA 5.20492 kcal/mol@LB@Unfolding Energy - sRNA 7.25518 kcal/mol@LB@@LB@Position - mRNA 171 -- 191@LB@Position - sRNA 39 -- 61@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 39 -- 45@LB@ |
43 |
0.001794 |
0.1344 |
b0631 |
ybeD |
-7.18 |
0.099343 |
171 -- 193 |
16 -- 40 |
UPF0250 family protein |
|
_____________170________________________194\n_____________|__________________________|\n5'-GCU...GAGUU__U______UUA______________AGCUG...AAG-3'\n______________GC_AUUUAA______CGUUACGCCGG\n______________||_|:||||______||||||:||:|\n______________CG_UGAAUU______GCAAUGUGGUC\n3'-UUU...UUCUU_________UUUUAA___________CUUUA...CAA-5'\n_____________|__________________________|\n_____________41_________________________15\n |
187 -- 193 |
16 -- 22 |
-19.4847 kcal/mol |
3.10673 kcal/mol |
9.1996 kcal/mol |
170 194@LB@ | |@LB@5'-GCU...GAGUU U UUA AGCUG...AAG-3'@LB@ GC AUUUAA CGUUACGCCGG@LB@ || |:|||| ||||||:||:|@LB@ CG UGAAUU GCAAUGUGGUC@LB@3'-UUU...UUCUU UUUUAA CUUUA...CAA-5'@LB@ | |@LB@ 41 15@LB@@LB@@LB@Energy -7.18 kcal/mol@LB@Hybridization Energy -19.4847 kcal/mol@LB@Unfolding Energy - mRNA 3.10673 kcal/mol@LB@Unfolding Energy - sRNA 9.1996 kcal/mol@LB@@LB@Position - mRNA 171 -- 193@LB@Position - sRNA 16 -- 40@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 16 -- 22@LB@ |
188 |
0.02199 |
0.3768 |
b3774 |
ilvC |
-7.43 |
0.085257 |
172 -- 181 |
37 -- 46 |
ketol-acid reductoisomerase NAD(P)-binding |
|
_____________171________182\n_____________|__________|\n5'-AUG...AACAA__________AACAU...GCU-3'\n______________UAAGAAGCAC\n______________:|||||||||\n______________GUUCUUCGUG\n3'-UUU...AAUUC__________AAUUU...CAA-5'\n_____________|__________|\n_____________47_________36\n |
175 -- 181 |
37 -- 43 |
-13.663 kcal/mol |
1.01181 kcal/mol |
5.21654 kcal/mol |
171 182@LB@ | |@LB@5'-AUG...AACAA AACAU...GCU-3'@LB@ UAAGAAGCAC@LB@ :|||||||||@LB@ GUUCUUCGUG@LB@3'-UUU...AAUUC AAUUU...CAA-5'@LB@ | |@LB@ 47 36@LB@@LB@@LB@Energy -7.43 kcal/mol@LB@Hybridization Energy -13.663 kcal/mol@LB@Unfolding Energy - mRNA 1.01181 kcal/mol@LB@Unfolding Energy - sRNA 5.21654 kcal/mol@LB@@LB@Position - mRNA 172 -- 181@LB@Position - sRNA 37 -- 46@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 37 -- 43@LB@ |
18 |
0.0004863 |
0.08107 |
b2217 |
rcsB |
-10.91 |
0.008593 |
172 -- 193 |
39 -- 59 |
response regulator in two-component regulatory system with RcsC and YojN |
|
_____________171____________________194\n_____________|______________________|\n5'-AAC...GUCAA_________GU_______U___CUAUU...GCG-3'\n______________GAGCUUGCU__AGCAAGG_AGC\n______________:|:||||||__||||||:_|||\n______________UUUGAACGA__UCGUUCU_UCG\n3'-UUU...CCUAC_________AU___________UGAAU...CAA-5'\n_____________|______________________|\n_____________60_____________________38\n |
183 -- 189 |
42 -- 48 |
-25.4912 kcal/mol |
8.43277 kcal/mol |
6.15149 kcal/mol |
171 194@LB@ | |@LB@5'-AAC...GUCAA GU U CUAUU...GCG-3'@LB@ GAGCUUGCU AGCAAGG AGC@LB@ :|:|||||| ||||||: |||@LB@ UUUGAACGA UCGUUCU UCG@LB@3'-UUU...CCUAC AU UGAAU...CAA-5'@LB@ | |@LB@ 60 38@LB@@LB@@LB@Energy -10.91 kcal/mol@LB@Hybridization Energy -25.4912 kcal/mol@LB@Unfolding Energy - mRNA 8.43277 kcal/mol@LB@Unfolding Energy - sRNA 6.15149 kcal/mol@LB@@LB@Position - mRNA 172 -- 193@LB@Position - sRNA 39 -- 59@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 42 -- 48@LB@ |
65 |
0.003382 |
0.1645 |
b1739 |
osmE |
-4.35 |
0.428849 |
173 -- 228 |
7 -- 58 |
osmotically-inducible lipoprotein |
|
_____________172______________________________________________________229\n_____________|________________________________________________________|\n5'-GAA...UAUCU___AC___GA___A_______A__GAAUAUGAACAAGAA____G______U_____GUGCA...AGC-3'\n______________AAC__GCU__UAA_CAAGAGG_CG_______________UAUG_CAGGAA_UCUGA\n______________|||__|||__|||_|||||:|_|:_______________||::_||||||_|||||\n______________UUG__CGA__AUU_GUUCUUC_GU_______________AUGU_GUCCUU_AGACU\n3'-UUU...CUACU___AA________C__________GAAUUUUUUAAGCA_____G______U_____ACACAA-5'\n_____________|________________________________________________________|\n_____________59_______________________________________________________6\n |
187 -- 193 |
40 -- 46 |
-28.7812 kcal/mol |
10.5809 kcal/mol |
13.8467 kcal/mol |
172 229@LB@ | |@LB@5'-GAA...UAUCU AC GA A A GAAUAUGAACAAGAA G U GUGCA...AGC-3'@LB@ AAC GCU UAA CAAGAGG CG UAUG CAGGAA UCUGA@LB@ ||| ||| ||| |||||:| |: ||:: |||||| |||||@LB@ UUG CGA AUU GUUCUUC GU AUGU GUCCUU AGACU@LB@3'-UUU...CUACU AA C GAAUUUUUUAAGCA G U ACACAA-5'@LB@ | |@LB@ 59 6@LB@@LB@@LB@Energy -4.35 kcal/mol@LB@Hybridization Energy -28.7812 kcal/mol@LB@Unfolding Energy - mRNA 10.5809 kcal/mol@LB@Unfolding Energy - sRNA 13.8467 kcal/mol@LB@@LB@Position - mRNA 173 -- 228@LB@Position - sRNA 7 -- 58@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 40 -- 46@LB@ |
93 |
0.006966 |
0.2379 |
b0436 |
tig |
-6.81 |
0.123164 |
173 -- 190 |
25 -- 42 |
peptidyl-prolyl cis/trans isomerase (trigger factor) |
|
_____________172________________191\n_____________|__________________|\n5'-UAC...UGACC_______GU__UUU____AGGUA...UCA-3'\n______________GAGCACU__GA___UUUG\n______________:||||||__:|___||:|\n______________UUCGUGA__UU___AAGC\n3'-UUU...CGUUC_______AU__UUU____AAUGU...CAA-5'\n_____________|__________________|\n_____________43_________________24\n |
173 -- 179 |
36 -- 42 |
-10.673 kcal/mol |
2.21437 kcal/mol |
1.64855 kcal/mol |
172 191@LB@ | |@LB@5'-UAC...UGACC GU UUU AGGUA...UCA-3'@LB@ GAGCACU GA UUUG@LB@ :|||||| :| ||:|@LB@ UUCGUGA UU AAGC@LB@3'-UUU...CGUUC AU UUU AAUGU...CAA-5'@LB@ | |@LB@ 43 24@LB@@LB@@LB@Energy -6.81 kcal/mol@LB@Hybridization Energy -10.673 kcal/mol@LB@Unfolding Energy - mRNA 2.21437 kcal/mol@LB@Unfolding Energy - sRNA 1.64855 kcal/mol@LB@@LB@Position - mRNA 173 -- 190@LB@Position - sRNA 25 -- 42@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 36 -- 42@LB@ |
47 |
0.002119 |
0.1452 |
b0694 |
kdpE |
-6.96 |
0.113004 |
177 -- 189 |
26 -- 38 |
response regulator in two-component regulatory system with KdpD |
|
_____________176___________190\n_____________|_____________|\n5'-ACG...CCUGA_____________CAUGA...CGC-3'\n______________ACUUGAAGAAUUU\n______________||||:||:||||:\n______________UGAAUUUUUUAAG\n3'-UUU...CUUCG_____________CAAUG...CAA-5'\n_____________|_____________|\n_____________39____________25\n |
179 -- 185 |
30 -- 36 |
-10.6038 kcal/mol |
2.21135 kcal/mol |
1.43364 kcal/mol |
176 190@LB@ | |@LB@5'-ACG...CCUGA CAUGA...CGC-3'@LB@ ACUUGAAGAAUUU@LB@ ||||:||:||||:@LB@ UGAAUUUUUUAAG@LB@3'-UUU...CUUCG CAAUG...CAA-5'@LB@ | |@LB@ 39 25@LB@@LB@@LB@Energy -6.96 kcal/mol@LB@Hybridization Energy -10.6038 kcal/mol@LB@Unfolding Energy - mRNA 2.21135 kcal/mol@LB@Unfolding Energy - sRNA 1.43364 kcal/mol@LB@@LB@Position - mRNA 177 -- 189@LB@Position - sRNA 26 -- 38@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 30 -- 36@LB@ |
141 |
0.01363 |
0.3114 |
b0767 |
pgl |
-6.62 |
0.137481 |
178 -- 199 |
36 -- 55 |
6-phosphogluconolactonase |
|
_____________177____________________200\n_____________|______________________|\n5'-UCA...GUCAG_____A__U__A__________CAUGA...AUG-3'\n______________UUGCU_AA_GC_AAGGAGCAUU\n______________|||||_||_||_|||:||||:|\n______________AACGA_UU_CG_UUCUUCGUGA\n3'-UUU...CUUUG_____A________________AUUUU...CAA-5'\n_____________|______________________|\n_____________56_____________________35\n |
193 -- 199 |
36 -- 42 |
-19.0667 kcal/mol |
6.27112 kcal/mol |
6.17795 kcal/mol |
177 200@LB@ | |@LB@5'-UCA...GUCAG A U A CAUGA...AUG-3'@LB@ UUGCU AA GC AAGGAGCAUU@LB@ ||||| || || |||:||||:|@LB@ AACGA UU CG UUCUUCGUGA@LB@3'-UUU...CUUUG A AUUUU...CAA-5'@LB@ | |@LB@ 56 35@LB@@LB@@LB@Energy -6.62 kcal/mol@LB@Hybridization Energy -19.0667 kcal/mol@LB@Unfolding Energy - mRNA 6.27112 kcal/mol@LB@Unfolding Energy - sRNA 6.17795 kcal/mol@LB@@LB@Position - mRNA 178 -- 199@LB@Position - sRNA 36 -- 55@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 36 -- 42@LB@ |
39 |
0.00159 |
0.1292 |
b1637 |
tyrS |
-8.51 |
0.043578 |
178 -- 203 |
5 -- 27 |
tyrosyl-tRNA synthetase |
|
_____________177________________________204\n_____________|__________________________|\n5'-CAU...UGCAG_________A__U_______U_____GCAAG...CGA-3'\n______________UCGUUAUAU_CA_GGAGAUU_UGAUG\n______________||||||:|:_||_|||:||:_|||||\n______________AGCAAUGUG_GU_CCUUUAG_ACUAC\n3'-UUU...UUUUA__________________________ACAA-5'\n_____________|__________________________|\n_____________28_________________________4\n |
191 -- 197 |
10 -- 16 |
-22.7194 kcal/mol |
5.60368 kcal/mol |
8.60118 kcal/mol |
177 204@LB@ | |@LB@5'-CAU...UGCAG A U U GCAAG...CGA-3'@LB@ UCGUUAUAU CA GGAGAUU UGAUG@LB@ ||||||:|: || |||:||: |||||@LB@ AGCAAUGUG GU CCUUUAG ACUAC@LB@3'-UUU...UUUUA ACAA-5'@LB@ | |@LB@ 28 4@LB@@LB@@LB@Energy -8.51 kcal/mol@LB@Hybridization Energy -22.7194 kcal/mol@LB@Unfolding Energy - mRNA 5.60368 kcal/mol@LB@Unfolding Energy - sRNA 8.60118 kcal/mol@LB@@LB@Position - mRNA 178 -- 203@LB@Position - sRNA 5 -- 27@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 10 -- 16@LB@ |
118 |
0.009927 |
0.271 |
b1654 |
grxD |
-11.37 |
0.006167 |
180 -- 241 |
7 -- 60 |
glutaredoxin-4 |
|
_____________179_______________________________________________________________242\n_____________|_________________________________________________________________|\n5'-AAA...GUAAA________AGG________CAAUG_____CACUAUCG_______C_A_________AUUG_____AAACC...CUG-3'\n______________GAAGUUUG___AAGCAAGA_____AGCAC________AAAAAAU_C___ACGCCAG_____CUGA\n______________|||::|||___||||||||_____|||||________|||||||_|___||:||||_____||||\n______________CUUUGAAC___UUCGUUCU_____UCGUG________UUUUUUA_G___UGUGGUC_____GACU\n3'-UUU...CCCUA________GAA__________________AA_____________A_CAA_______CUUUA____ACACAA-5'\n_____________|_________________________________________________________________|\n_____________61________________________________________________________________6\n |
227 -- 233 |
16 -- 22 |
-34.247 kcal/mol |
9.03509 kcal/mol |
13.8468 kcal/mol |
179 242@LB@ | |@LB@5'-AAA...GUAAA AGG CAAUG CACUAUCG C A AUUG AAACC...CUG-3'@LB@ GAAGUUUG AAGCAAGA AGCAC AAAAAAU C ACGCCAG CUGA@LB@ |||::||| |||||||| ||||| ||||||| | ||:|||| ||||@LB@ CUUUGAAC UUCGUUCU UCGUG UUUUUUA G UGUGGUC GACU@LB@3'-UUU...CCCUA GAA AA A CAA CUUUA ACACAA-5'@LB@ | |@LB@ 61 6@LB@@LB@@LB@Energy -11.37 kcal/mol@LB@Hybridization Energy -34.247 kcal/mol@LB@Unfolding Energy - mRNA 9.03509 kcal/mol@LB@Unfolding Energy - sRNA 13.8468 kcal/mol@LB@@LB@Position - mRNA 180 -- 241@LB@Position - sRNA 7 -- 60@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 16 -- 22@LB@ |
82 |
0.005534 |
0.2146 |
b1342 |
ydaN |
-6.57 |
0.141434 |
180 -- 206 |
30 -- 54 |
putative Zn(II) transporter |
|
_____________179_________________________207\n_____________|___________________________|\n5'-CGU...AAUAA___G____U_AU_________GU____GCGAU...AUG-3'\n______________UGC_UUGA_G__GGAGGCACU__GGAA\n______________|||_||:|_|__:||:|||||__::||\n______________ACG_AAUU_C__UCUUCGUGA__UUUU\n3'-UUU...UUUGA__________GU_________AU____UAAGC...CAA-5'\n_____________|___________________________|\n_____________55__________________________29\n |
194 -- 200 |
36 -- 42 |
-19.056 kcal/mol |
6.29262 kcal/mol |
6.19579 kcal/mol |
179 207@LB@ | |@LB@5'-CGU...AAUAA G U AU GU GCGAU...AUG-3'@LB@ UGC UUGA G GGAGGCACU GGAA@LB@ ||| ||:| | :||:||||| ::||@LB@ ACG AAUU C UCUUCGUGA UUUU@LB@3'-UUU...UUUGA GU AU UAAGC...CAA-5'@LB@ | |@LB@ 55 29@LB@@LB@@LB@Energy -6.57 kcal/mol@LB@Hybridization Energy -19.056 kcal/mol@LB@Unfolding Energy - mRNA 6.29262 kcal/mol@LB@Unfolding Energy - sRNA 6.19579 kcal/mol@LB@@LB@Position - mRNA 180 -- 206@LB@Position - sRNA 30 -- 54@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 36 -- 42@LB@ |
14 |
0.0002995 |
0.06692 |
b4195 |
ulaC |
-9.74 |
0.019405 |
182 -- 212 |
24 -- 54 |
L-ascorbate-specific enzyme IIA component of PTS |
|
_____________181_______________________________213\n_____________|_________________________________|\n5'-GCG...CAGGA___G__________C____CAU_______A___GAUUC...UGG-3'\n______________UGU__AAGUAAGGA_GCGC____GAAAUU_CGU\n______________||:__|||:|||:|_||:|____:|||||_|||\n______________ACG__UUCGUUCUU_CGUG____UUUUAA_GCA\n3'-UUU...UUUGA___AA______________AAUU__________AUGUG...CAA-5'\n_____________|_________________________________|\n_____________55________________________________23\n |
187 -- 193 |
42 -- 48 |
-22.0137 kcal/mol |
6.00518 kcal/mol |
6.26866 kcal/mol |
181 213@LB@ | |@LB@5'-GCG...CAGGA G C CAU A GAUUC...UGG-3'@LB@ UGU AAGUAAGGA GCGC GAAAUU CGU@LB@ ||: |||:|||:| ||:| :||||| |||@LB@ ACG UUCGUUCUU CGUG UUUUAA GCA@LB@3'-UUU...UUUGA AA AAUU AUGUG...CAA-5'@LB@ | |@LB@ 55 23@LB@@LB@@LB@Energy -9.74 kcal/mol@LB@Hybridization Energy -22.0137 kcal/mol@LB@Unfolding Energy - mRNA 6.00518 kcal/mol@LB@Unfolding Energy - sRNA 6.26866 kcal/mol@LB@@LB@Position - mRNA 182 -- 212@LB@Position - sRNA 24 -- 54@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 42 -- 48@LB@ |
174 |
0.01992 |
0.3669 |
b1098 |
tmk |
-8.25 |
0.051647 |
183 -- 196 |
29 -- 42 |
thymidylate kinase |
|
_____________182____________197\n_____________|______________|\n5'-UAA...UCUGA______________AAAAA...GCG-3'\n______________AAGUGCUUAAGGAA\n______________|||::|||||::||\n______________UUCGUGAAUUUUUU\n3'-UUU...CGUUC______________AAGCA...CAA-5'\n_____________|______________|\n_____________43_____________28\n |
190 -- 196 |
29 -- 35 |
-11.8447 kcal/mol |
1.97362 kcal/mol |
1.62369 kcal/mol |
182 197@LB@ | |@LB@5'-UAA...UCUGA AAAAA...GCG-3'@LB@ AAGUGCUUAAGGAA@LB@ |||::|||||::||@LB@ UUCGUGAAUUUUUU@LB@3'-UUU...CGUUC AAGCA...CAA-5'@LB@ | |@LB@ 43 28@LB@@LB@@LB@Energy -8.25 kcal/mol@LB@Hybridization Energy -11.8447 kcal/mol@LB@Unfolding Energy - mRNA 1.97362 kcal/mol@LB@Unfolding Energy - sRNA 1.62369 kcal/mol@LB@@LB@Position - mRNA 183 -- 196@LB@Position - sRNA 29 -- 42@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 29 -- 35@LB@ |
45 |
0.001912 |
0.1369 |
b0080 |
cra |
-5.81 |
0.213706 |
183 -- 197 |
38 -- 52 |
transcriptional repressor-activator for carbon metabolism |
|
_____________182_____________198\n_____________|_______________|\n5'-GGC...UACAU____C__________AUUGU...AAA-3'\n______________UUUA_GCAAGGGGCA\n______________:|||_|||||::|||\n______________GAAU_CGUUCUUCGU\n3'-UUU...UGAAC____U__________GAAUU...CAA-5'\n_____________|_______________|\n_____________53______________37\n |
191 -- 197 |
38 -- 44 |
-16.0644 kcal/mol |
4.16124 kcal/mol |
6.09169 kcal/mol |
182 198@LB@ | |@LB@5'-GGC...UACAU C AUUGU...AAA-3'@LB@ UUUA GCAAGGGGCA@LB@ :||| |||||::|||@LB@ GAAU CGUUCUUCGU@LB@3'-UUU...UGAAC U GAAUU...CAA-5'@LB@ | |@LB@ 53 37@LB@@LB@@LB@Energy -5.81 kcal/mol@LB@Hybridization Energy -16.0644 kcal/mol@LB@Unfolding Energy - mRNA 4.16124 kcal/mol@LB@Unfolding Energy - sRNA 6.09169 kcal/mol@LB@@LB@Position - mRNA 183 -- 197@LB@Position - sRNA 38 -- 52@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 38 -- 44@LB@ |
158 |
0.01725 |
0.3504 |
b3857 |
mobA |
-11.09 |
0.007545 |
184 -- 212 |
5 -- 35 |
molybdopterin-guanine dinucleotide synthase |
|
_____________183_____________________________213\n_____________|_______________________________|\n5'-UCC...CACAA_______GG___________U__________ACGAC...AAC-3'\n______________UAAAAGA__CG__AUAUCGG_GAAUCUGAUG\n______________|||||:|__||__|:|:|:|_:|||||||||\n______________AUUUUUU__GC__UGUGGUC_UUUAGACUAC\n3'-UUU...CGUGA_______AA__AA_______C__________ACAA-5'\n_____________|_______________________________|\n_____________36______________________________4\n |
184 -- 190 |
29 -- 35 |
-25.0811 kcal/mol |
5.24608 kcal/mol |
8.74745 kcal/mol |
183 213@LB@ | |@LB@5'-UCC...CACAA GG U ACGAC...AAC-3'@LB@ UAAAAGA CG AUAUCGG GAAUCUGAUG@LB@ |||||:| || |:|:|:| :|||||||||@LB@ AUUUUUU GC UGUGGUC UUUAGACUAC@LB@3'-UUU...CGUGA AA AA C ACAA-5'@LB@ | |@LB@ 36 4@LB@@LB@@LB@Energy -11.09 kcal/mol@LB@Hybridization Energy -25.0811 kcal/mol@LB@Unfolding Energy - mRNA 5.24608 kcal/mol@LB@Unfolding Energy - sRNA 8.74745 kcal/mol@LB@@LB@Position - mRNA 184 -- 212@LB@Position - sRNA 5 -- 35@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 29 -- 35@LB@ |
10 |
0.0001005 |
0.03239 |
b1260 |
trpA |
-10.26 |
0.013526 |
184 -- 203 |
5 -- 22 |
tryptophan synthase alpha subunit |
|
_____________183__________________204\n_____________|____________________|\n5'-GCC...UGAAA____GAG_____________GAACG...CAU-3'\n______________GCAC___GGGAAAUCUGAUG\n______________:|||___:||||||||||||\n______________UGUG___UCCUUUAGACUAC\n3'-UUU...AGCAA____G_______________ACAA-5'\n_____________|____________________|\n_____________23___________________4\n |
192 -- 198 |
10 -- 16 |
-23.1901 kcal/mol |
5.35202 kcal/mol |
7.57357 kcal/mol |
183 204@LB@ | |@LB@5'-GCC...UGAAA GAG GAACG...CAU-3'@LB@ GCAC GGGAAAUCUGAUG@LB@ :||| :||||||||||||@LB@ UGUG UCCUUUAGACUAC@LB@3'-UUU...AGCAA G ACAA-5'@LB@ | |@LB@ 23 4@LB@@LB@@LB@Energy -10.26 kcal/mol@LB@Hybridization Energy -23.1901 kcal/mol@LB@Unfolding Energy - mRNA 5.35202 kcal/mol@LB@Unfolding Energy - sRNA 7.57357 kcal/mol@LB@@LB@Position - mRNA 184 -- 203@LB@Position - sRNA 5 -- 22@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 10 -- 16@LB@ |
105 |
0.008762 |
0.2688 |
b2735 |
ygbI |
-7.10 |
0.103888 |
185 -- 196 |
38 -- 49 |
DeoR family putative transcriptional regulator |
|
_____________184__________197\n_____________|____________|\n5'-UUC...GGACA___G________AAAGU...AUA-3'\n______________AAG_AAGGAGCA\n______________|||_|||:||||\n______________UUC_UUCUUCGU\n3'-UUU...ACGAA___G________GAAUU...CAA-5'\n_____________|____________|\n_____________50___________37\n |
190 -- 196 |
38 -- 44 |
-14.2659 kcal/mol |
1.1364 kcal/mol |
6.02696 kcal/mol |
184 197@LB@ | |@LB@5'-UUC...GGACA G AAAGU...AUA-3'@LB@ AAG AAGGAGCA@LB@ ||| |||:||||@LB@ UUC UUCUUCGU@LB@3'-UUU...ACGAA G GAAUU...CAA-5'@LB@ | |@LB@ 50 37@LB@@LB@@LB@Energy -7.10 kcal/mol@LB@Hybridization Energy -14.2659 kcal/mol@LB@Unfolding Energy - mRNA 1.1364 kcal/mol@LB@Unfolding Energy - sRNA 6.02696 kcal/mol@LB@@LB@Position - mRNA 185 -- 196@LB@Position - sRNA 38 -- 49@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 38 -- 44@LB@ |
133 |
0.0127 |
0.3077 |
b2452 |
eutH |
-4.80 |
0.352106 |
186 -- 194 |
38 -- 46 |
ethanolamine transporter |
|
_____________185_______195\n_____________|_________|\n5'-UUG...ACUAA_________AAGGC...UCC-3'\n______________CAGGGAGUA\n______________||:|:||:|\n______________GUUCUUCGU\n3'-UUU...AAUUC_________GAAUU...CAA-5'\n_____________|_________|\n_____________47________37\n |
188 -- 194 |
38 -- 44 |
-8.62764 kcal/mol |
1.2009 kcal/mol |
2.62609 kcal/mol |
185 195@LB@ | |@LB@5'-UUG...ACUAA AAGGC...UCC-3'@LB@ CAGGGAGUA@LB@ ||:|:||:|@LB@ GUUCUUCGU@LB@3'-UUU...AAUUC GAAUU...CAA-5'@LB@ | |@LB@ 47 37@LB@@LB@@LB@Energy -4.80 kcal/mol@LB@Hybridization Energy -8.62764 kcal/mol@LB@Unfolding Energy - mRNA 1.2009 kcal/mol@LB@Unfolding Energy - sRNA 2.62609 kcal/mol@LB@@LB@Position - mRNA 186 -- 194@LB@Position - sRNA 38 -- 46@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 38 -- 44@LB@ |
9 |
7.531e-05 |
0.02695 |
b0491 |
fetB |
-11.86 |
0.004271 |
187 -- 209 |
25 -- 47 |
iron export ABC transporter permease; peroxide resistance protein |
|
_____________186_____________________210\n_____________|_______________________|\n5'-GCC...GAAAU___________GCUAU___C___CAUAA...AGA-3'\n______________GCAGGAAGCAC_____GAA_UCG\n______________|||:|||||||_____:||_|||\n______________CGUUCUUCGUG_____UUU_AGC\n3'-UUU...GAAUU___________AAUUU___A___AAUGU...CAA-5'\n_____________|_______________________|\n_____________48______________________24\n |
191 -- 197 |
37 -- 43 |
-22.8314 kcal/mol |
4.71887 kcal/mol |
6.25056 kcal/mol |
186 210@LB@ | |@LB@5'-GCC...GAAAU GCUAU C CAUAA...AGA-3'@LB@ GCAGGAAGCAC GAA UCG@LB@ |||:||||||| :|| |||@LB@ CGUUCUUCGUG UUU AGC@LB@3'-UUU...GAAUU AAUUU A AAUGU...CAA-5'@LB@ | |@LB@ 48 24@LB@@LB@@LB@Energy -11.86 kcal/mol@LB@Hybridization Energy -22.8314 kcal/mol@LB@Unfolding Energy - mRNA 4.71887 kcal/mol@LB@Unfolding Energy - sRNA 6.25056 kcal/mol@LB@@LB@Position - mRNA 187 -- 209@LB@Position - sRNA 25 -- 47@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 37 -- 43@LB@ |
64 |
0.003339 |
0.1645 |
b3166 |
truB |
-7.27 |
0.093914 |
187 -- 199 |
36 -- 48 |
tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase |
|
_____________186___________200\n_____________|_____________|\n5'-GGC...ACGAC_________G___AAUGA...AAC-3'\n______________AGCAAGGAG_ACU\n______________||||||:||_|||\n______________UCGUUCUUC_UGA\n3'-UUU...CGAAU_________G___AUUUU...CAA-5'\n_____________|_____________|\n_____________49____________35\n |
189 -- 195 |
40 -- 46 |
-16.8762 kcal/mol |
3.76451 kcal/mol |
5.83861 kcal/mol |
186 200@LB@ | |@LB@5'-GGC...ACGAC G AAUGA...AAC-3'@LB@ AGCAAGGAG ACU@LB@ ||||||:|| |||@LB@ UCGUUCUUC UGA@LB@3'-UUU...CGAAU G AUUUU...CAA-5'@LB@ | |@LB@ 49 35@LB@@LB@@LB@Energy -7.27 kcal/mol@LB@Hybridization Energy -16.8762 kcal/mol@LB@Unfolding Energy - mRNA 3.76451 kcal/mol@LB@Unfolding Energy - sRNA 5.83861 kcal/mol@LB@@LB@Position - mRNA 187 -- 199@LB@Position - sRNA 36 -- 48@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 40 -- 46@LB@ |
187 |
0.02188 |
0.3768 |
b3065 |
rpsU |
-8.54 |
0.042773 |
188 -- 200 |
37 -- 49 |
30S ribosomal subunit protein S21 |
|
_____________187___________201\n_____________|_____________|\n5'-GAC...AUCAA_____________AUGCC...GUC-3'\n______________AGGUGAGAGGCAC\n______________|:|::|||:||||\n______________UUCGUUCUUCGUG\n3'-UUU...ACGAA_____________AAUUU...CAA-5'\n_____________|_____________|\n_____________50____________36\n |
194 -- 200 |
37 -- 43 |
-18.635 kcal/mol |
4.05763 kcal/mol |
6.03369 kcal/mol |
187 201@LB@ | |@LB@5'-GAC...AUCAA AUGCC...GUC-3'@LB@ AGGUGAGAGGCAC@LB@ |:|::|||:||||@LB@ UUCGUUCUUCGUG@LB@3'-UUU...ACGAA AAUUU...CAA-5'@LB@ | |@LB@ 50 36@LB@@LB@@LB@Energy -8.54 kcal/mol@LB@Hybridization Energy -18.635 kcal/mol@LB@Unfolding Energy - mRNA 4.05763 kcal/mol@LB@Unfolding Energy - sRNA 6.03369 kcal/mol@LB@@LB@Position - mRNA 188 -- 200@LB@Position - sRNA 37 -- 49@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 37 -- 43@LB@ |
151 |
0.0157 |
0.3349 |
b0586 |
entF |
-8.26 |
0.051334 |
189 -- 199 |
37 -- 47 |
enterobactin synthase multienzyme complex component ATP-dependent |
|
_____________188_________200\n_____________|___________|\n5'-CCC...CAGUU___________AAUGA...UUG-3'\n______________GCAGGAGGCAC\n______________|||:||:||||\n______________CGUUCUUCGUG\n3'-UUU...GAAUU___________AAUUU...CAA-5'\n_____________|___________|\n_____________48__________36\n |
193 -- 199 |
37 -- 43 |
-17.6877 kcal/mol |
4.1913 kcal/mol |
5.23944 kcal/mol |
188 200@LB@ | |@LB@5'-CCC...CAGUU AAUGA...UUG-3'@LB@ GCAGGAGGCAC@LB@ |||:||:||||@LB@ CGUUCUUCGUG@LB@3'-UUU...GAAUU AAUUU...CAA-5'@LB@ | |@LB@ 48 36@LB@@LB@@LB@Energy -8.26 kcal/mol@LB@Hybridization Energy -17.6877 kcal/mol@LB@Unfolding Energy - mRNA 4.1913 kcal/mol@LB@Unfolding Energy - sRNA 5.23944 kcal/mol@LB@@LB@Position - mRNA 189 -- 199@LB@Position - sRNA 37 -- 47@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 37 -- 43@LB@ |
157 |
0.01701 |
0.3489 |
b3856 |
mobB |
-4.94 |
0.329991 |
189 -- 197 |
52 -- 60 |
molybdopterin-guanine dinucleotide biosynthesis protein B |
|
_____________188_______198\n_____________|_________|\n5'-GUG...CCAGA_________CCGAU...CCA-3'\n______________GGAGCUUGC\n______________|:|:|||||\n______________CUUUGAACG\n3'-UUU...CCCUA_________AAUUC...CAA-5'\n_____________|_________|\n_____________61________51\n |
191 -- 197 |
52 -- 58 |
-10.6989 kcal/mol |
2.59286 kcal/mol |
3.16562 kcal/mol |
188 198@LB@ | |@LB@5'-GUG...CCAGA CCGAU...CCA-3'@LB@ GGAGCUUGC@LB@ |:|:|||||@LB@ CUUUGAACG@LB@3'-UUU...CCCUA AAUUC...CAA-5'@LB@ | |@LB@ 61 51@LB@@LB@@LB@Energy -4.94 kcal/mol@LB@Hybridization Energy -10.6989 kcal/mol@LB@Unfolding Energy - mRNA 2.59286 kcal/mol@LB@Unfolding Energy - sRNA 3.16562 kcal/mol@LB@@LB@Position - mRNA 189 -- 197@LB@Position - sRNA 52 -- 60@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 52 -- 58@LB@ |
8 |
5.642e-05 |
0.02272 |
b2282 |
nuoH |
-5.33 |
0.272754 |
189 -- 221 |
13 -- 44 |
NADH:ubiquinone oxidoreductase membrane subunit H |
|
_____________188________________________________222\n_____________|__________________________________|\n5'-CUC...CUCAA________AACAAU_____G_A__U_________CUGAU...GCU-3'\n______________GGAGGCAC______GAGUU_G_UA_CACC_GGAA\n______________:||:||||______:|:||_|_||_||||_||||\n______________UCUUCGUG______UUUAA_C_AU_GUGG_CCUU\n3'-UUU...UUCGU________AAUUU______G_A_______U____UAGAC...CAA-5'\n_____________|__________________________________|\n_____________45_________________________________12\n |
190 -- 196 |
37 -- 43 |
-24.1154 kcal/mol |
6.60325 kcal/mol |
12.1776 kcal/mol |
188 222@LB@ | |@LB@5'-CUC...CUCAA AACAAU G A U CUGAU...GCU-3'@LB@ GGAGGCAC GAGUU G UA CACC GGAA@LB@ :||:|||| :|:|| | || |||| ||||@LB@ UCUUCGUG UUUAA C AU GUGG CCUU@LB@3'-UUU...UUCGU AAUUU G A U UAGAC...CAA-5'@LB@ | |@LB@ 45 12@LB@@LB@@LB@Energy -5.33 kcal/mol@LB@Hybridization Energy -24.1154 kcal/mol@LB@Unfolding Energy - mRNA 6.60325 kcal/mol@LB@Unfolding Energy - sRNA 12.1776 kcal/mol@LB@@LB@Position - mRNA 189 -- 221@LB@Position - sRNA 13 -- 44@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 37 -- 43@LB@ |
62 |
0.00332 |
0.1645 |
b1305 |
pspB |
-5.29 |
0.278747 |
189 -- 201 |
34 -- 46 |
psp operon transcription co-activator |
|
_____________188___________202\n_____________|_____________|\n5'-AUU...UCGUC_____________UGAGC...GUG-3'\n______________UAAGGAGUACUUA\n______________:|||:||:|||||\n______________GUUCUUCGUGAAU\n3'-UUU...AAUUC_____________UUUUU...CAA-5'\n_____________|_____________|\n_____________47____________33\n |
195 -- 201 |
34 -- 40 |
-14.7021 kcal/mol |
3.41245 kcal/mol |
5.99897 kcal/mol |
188 202@LB@ | |@LB@5'-AUU...UCGUC UGAGC...GUG-3'@LB@ UAAGGAGUACUUA@LB@ :|||:||:|||||@LB@ GUUCUUCGUGAAU@LB@3'-UUU...AAUUC UUUUU...CAA-5'@LB@ | |@LB@ 47 33@LB@@LB@@LB@Energy -5.29 kcal/mol@LB@Hybridization Energy -14.7021 kcal/mol@LB@Unfolding Energy - mRNA 3.41245 kcal/mol@LB@Unfolding Energy - sRNA 5.99897 kcal/mol@LB@@LB@Position - mRNA 189 -- 201@LB@Position - sRNA 34 -- 46@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 34 -- 40@LB@ |
148 |
0.01496 |
0.3255 |
b2202 |
napC |
-5.47 |
0.254772 |
189 -- 211 |
26 -- 46 |
quinol dehydrogenase electron source for NapAB |
|
_____________188_____________________212\n_____________|_______________________|\n5'-ACG...GGAAA_______U____A__________UGACC...GUU-3'\n______________UAAGAGG_UAUU_UGGGAAAUUC\n______________:||||:|_:|:|_|:::||||||\n______________GUUCUUC_GUGA_AUUUUUUAAG\n3'-UUU...AAUUC_______________________CAAUG...CAA-5'\n_____________|_______________________|\n_____________47______________________25\n |
205 -- 211 |
26 -- 32 |
-14.2639 kcal/mol |
2.66276 kcal/mol |
6.13041 kcal/mol |
188 212@LB@ | |@LB@5'-ACG...GGAAA U A UGACC...GUU-3'@LB@ UAAGAGG UAUU UGGGAAAUUC@LB@ :||||:| :|:| |:::||||||@LB@ GUUCUUC GUGA AUUUUUUAAG@LB@3'-UUU...AAUUC CAAUG...CAA-5'@LB@ | |@LB@ 47 25@LB@@LB@@LB@Energy -5.47 kcal/mol@LB@Hybridization Energy -14.2639 kcal/mol@LB@Unfolding Energy - mRNA 2.66276 kcal/mol@LB@Unfolding Energy - sRNA 6.13041 kcal/mol@LB@@LB@Position - mRNA 189 -- 211@LB@Position - sRNA 26 -- 46@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 26 -- 32@LB@ |
153 |
0.016 |
0.3359 |
b2167 |
fruA |
-4.10 |
0.476180 |
191 -- 199 |
37 -- 45 |
fused fructose-specific PTS enzymes: IIBcomponent/IIC components |
|
_____________190_______200\n_____________|_________|\n5'-CGC...AGCAG_________AAUGA...AAA-3'\n______________GAGAGGCAU\n______________:|||:|||:\n______________UUCUUCGUG\n3'-UUU...AUUCG_________AAUUU...CAA-5'\n_____________|_________|\n_____________46________36\n |
193 -- 199 |
37 -- 43 |
-10.9543 kcal/mol |
1.97714 kcal/mol |
4.8783 kcal/mol |
190 200@LB@ | |@LB@5'-CGC...AGCAG AAUGA...AAA-3'@LB@ GAGAGGCAU@LB@ :|||:|||:@LB@ UUCUUCGUG@LB@3'-UUU...AUUCG AAUUU...CAA-5'@LB@ | |@LB@ 46 36@LB@@LB@@LB@Energy -4.10 kcal/mol@LB@Hybridization Energy -10.9543 kcal/mol@LB@Unfolding Energy - mRNA 1.97714 kcal/mol@LB@Unfolding Energy - sRNA 4.8783 kcal/mol@LB@@LB@Position - mRNA 191 -- 199@LB@Position - sRNA 37 -- 45@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 37 -- 43@LB@ |
70 |
0.003574 |
0.1645 |
b0145 |
dksA |
-6.64 |
0.135564 |
191 -- 197 |
39 -- 45 |
transcriptional regulator of rRNA transcription; DnaK suppressor protein |
|
_____________190_____198\n_____________|_______|\n5'-AAU...UUAAG_______AACAU...AUG-3'\n______________GAGAAGC\n______________:||||||\n______________UUCUUCG\n3'-UUU...AUUCG_______UGAAU...CAA-5'\n_____________|_______|\n_____________46______38\n |
191 -- 197 |
39 -- 45 |
-7.63285 kcal/mol |
0.475666 kcal/mol |
0.514773 kcal/mol |
190 198@LB@ | |@LB@5'-AAU...UUAAG AACAU...AUG-3'@LB@ GAGAAGC@LB@ :||||||@LB@ UUCUUCG@LB@3'-UUU...AUUCG UGAAU...CAA-5'@LB@ | |@LB@ 46 38@LB@@LB@@LB@Energy -6.64 kcal/mol@LB@Hybridization Energy -7.63285 kcal/mol@LB@Unfolding Energy - mRNA 0.475666 kcal/mol@LB@Unfolding Energy - sRNA 0.514773 kcal/mol@LB@@LB@Position - mRNA 191 -- 197@LB@Position - sRNA 39 -- 45@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 39 -- 45@LB@ |
41 |
0.001644 |
0.1292 |
b1918 |
yecS |
-7.37 |
0.088723 |
192 -- 214 |
37 -- 60 |
ABC family putative inner membrane permease |
|
_____________191_______________________215\n_____________|_________________________|\n5'-GGC...CUCCG__________CAU_______A____ACAAC...GCU-3'\n______________GAAAC__GCU___GCAAGAA_GUAU\n______________|||||__|||___|||||||_|:|:\n______________CUUUG__CGA___CGUUCUU_CGUG\n3'-UUU...CCCUA_____AA___AUU____________AAUUU...CAA-5'\n_____________|_________________________|\n_____________61________________________36\n |
203 -- 209 |
41 -- 47 |
-18.5053 kcal/mol |
4.89056 kcal/mol |
6.24651 kcal/mol |
191 215@LB@ | |@LB@5'-GGC...CUCCG CAU A ACAAC...GCU-3'@LB@ GAAAC GCU GCAAGAA GUAU@LB@ ||||| ||| ||||||| |:|:@LB@ CUUUG CGA CGUUCUU CGUG@LB@3'-UUU...CCCUA AA AUU AAUUU...CAA-5'@LB@ | |@LB@ 61 36@LB@@LB@@LB@Energy -7.37 kcal/mol@LB@Hybridization Energy -18.5053 kcal/mol@LB@Unfolding Energy - mRNA 4.89056 kcal/mol@LB@Unfolding Energy - sRNA 6.24651 kcal/mol@LB@@LB@Position - mRNA 192 -- 214@LB@Position - sRNA 37 -- 60@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 41 -- 47@LB@ |
128 |
0.01225 |
0.3033 |
b3299 |
rpmJ |
-5.94 |
0.199813 |
193 -- 212 |
24 -- 42 |
50S ribosomal subunit protein L36 |
|
_____________192__________________213\n_____________|____________________|\n5'-GGA...ACGGA_____AAAAU__________GCUUC...AUA-3'\n______________GAGUA_____GAAAGUUCGU\n______________:||:|_____:|||:|||||\n______________UUCGU_____UUUUUAAGCA\n3'-UUU...CGUUC_____GAAU___________AUGUG...CAA-5'\n_____________|____________________|\n_____________43___________________23\n |
206 -- 212 |
24 -- 30 |
-12.4383 kcal/mol |
4.85088 kcal/mol |
1.64896 kcal/mol |
192 213@LB@ | |@LB@5'-GGA...ACGGA AAAAU GCUUC...AUA-3'@LB@ GAGUA GAAAGUUCGU@LB@ :||:| :|||:|||||@LB@ UUCGU UUUUUAAGCA@LB@3'-UUU...CGUUC GAAU AUGUG...CAA-5'@LB@ | |@LB@ 43 23@LB@@LB@@LB@Energy -5.94 kcal/mol@LB@Hybridization Energy -12.4383 kcal/mol@LB@Unfolding Energy - mRNA 4.85088 kcal/mol@LB@Unfolding Energy - sRNA 1.64896 kcal/mol@LB@@LB@Position - mRNA 193 -- 212@LB@Position - sRNA 24 -- 42@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 24 -- 30@LB@ |
2 |
4.936e-07 |
0.0007949 |
b1237 |
hns |
-13.24 |
0.001473 |
195 -- 222 |
26 -- 57 |
global DNA-binding transcriptional dual regulator H-NS |
|
_____________194______________________________223\n_____________|________________________________|\n5'-CUC...AGAUU___ACAA_________________________UGAAC...UAG-3'\n______________ACU____UGAGC__GAAGCACUUAAA__AUUC\n______________|||____|:|||__||||||||||||__||||\n______________UGA____AUUCG__CUUCGUGAAUUU__UAAG\n3'-UUU...UACUU___ACGA_____UU____________UU____CAAUG...CAA-5'\n_____________|________________________________|\n_____________58_______________________________25\n |
212 -- 218 |
32 -- 38 |
-22.6274 kcal/mol |
3.10903 kcal/mol |
6.27605 kcal/mol |
194 223@LB@ | |@LB@5'-CUC...AGAUU ACAA UGAAC...UAG-3'@LB@ ACU UGAGC GAAGCACUUAAA AUUC@LB@ ||| |:||| |||||||||||| ||||@LB@ UGA AUUCG CUUCGUGAAUUU UAAG@LB@3'-UUU...UACUU ACGA UU UU CAAUG...CAA-5'@LB@ | |@LB@ 58 25@LB@@LB@@LB@Energy -13.24 kcal/mol@LB@Hybridization Energy -22.6274 kcal/mol@LB@Unfolding Energy - mRNA 3.10903 kcal/mol@LB@Unfolding Energy - sRNA 6.27605 kcal/mol@LB@@LB@Position - mRNA 195 -- 222@LB@Position - sRNA 26 -- 57@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 32 -- 38@LB@ |
175 |
0.01993 |
0.3669 |
b0183 |
rnhB |
-5.94 |
0.199165 |
195 -- 215 |
23 -- 41 |
ribonuclease HII degrades RNA of DNA-RNA hybrids |
|
_____________194___________________216\n_____________|_____________________|\n5'-AAU...GAGUU_____AA___UC_________UAUCC...UCC-3'\n______________AGCAC__UGA__GAAUUUGUU\n______________|||||__|:|__:||||:|||\n______________UCGUG__AUU__UUUAAGCAA\n3'-UUU...GUUCU_____A____U__________UGUGG...CAA-5'\n_____________|_____________________|\n_____________42____________________22\n |
209 -- 215 |
23 -- 29 |
-11.3649 kcal/mol |
3.77136 kcal/mol |
1.64896 kcal/mol |
194 216@LB@ | |@LB@5'-AAU...GAGUU AA UC UAUCC...UCC-3'@LB@ AGCAC UGA GAAUUUGUU@LB@ ||||| |:| :||||:|||@LB@ UCGUG AUU UUUAAGCAA@LB@3'-UUU...GUUCU A U UGUGG...CAA-5'@LB@ | |@LB@ 42 22@LB@@LB@@LB@Energy -5.94 kcal/mol@LB@Hybridization Energy -11.3649 kcal/mol@LB@Unfolding Energy - mRNA 3.77136 kcal/mol@LB@Unfolding Energy - sRNA 1.64896 kcal/mol@LB@@LB@Position - mRNA 195 -- 215@LB@Position - sRNA 23 -- 41@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 23 -- 29@LB@ |
116 |
0.009699 |
0.2693 |
b2708 |
srlQ |
-8.08 |
0.057211 |
196 -- 214 |
36 -- 49 |
D-arabinose 5-phosphate isomerase |
|
_____________195_________________215\n_____________|___________________|\n5'-UAC...GGAGA______UGAGU________ACUGA...GCG-3'\n______________GAGCAA_____GAAGCACU\n______________:|||||_____||||||||\n______________UUCGUU_____CUUCGUGA\n3'-UUU...ACGAA___________________AUUUU...CAA-5'\n_____________|___________________|\n_____________50__________________35\n |
208 -- 214 |
36 -- 42 |
-17.2491 kcal/mol |
3.12814 kcal/mol |
6.03645 kcal/mol |
195 215@LB@ | |@LB@5'-UAC...GGAGA UGAGU ACUGA...GCG-3'@LB@ GAGCAA GAAGCACU@LB@ :||||| ||||||||@LB@ UUCGUU CUUCGUGA@LB@3'-UUU...ACGAA AUUUU...CAA-5'@LB@ | |@LB@ 50 35@LB@@LB@@LB@Energy -8.08 kcal/mol@LB@Hybridization Energy -17.2491 kcal/mol@LB@Unfolding Energy - mRNA 3.12814 kcal/mol@LB@Unfolding Energy - sRNA 6.03645 kcal/mol@LB@@LB@Position - mRNA 196 -- 214@LB@Position - sRNA 36 -- 49@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 36 -- 42@LB@ |
163 |
0.0182 |
0.3566 |
b0397 |
sbcC |
-8.10 |
0.056577 |
196 -- 210 |
26 -- 43 |
exonuclease dsDNA ATP-dependent |
|
_____________195________________211\n_____________|__________________|\n5'-GAA...AACAC__________________UCAGC...UUG-3'\n______________GAAGCAU___GAAAAUUC\n______________||||||:___:|||||||\n______________CUUCGUG___UUUUUAAG\n3'-UUU...UCGUU_______AAU________CAAUG...CAA-5'\n_____________|__________________|\n_____________44_________________25\n |
204 -- 210 |
26 -- 32 |
-13.6528 kcal/mol |
1.79109 kcal/mol |
3.75931 kcal/mol |
195 211@LB@ | |@LB@5'-GAA...AACAC UCAGC...UUG-3'@LB@ GAAGCAU GAAAAUUC@LB@ ||||||: :|||||||@LB@ CUUCGUG UUUUUAAG@LB@3'-UUU...UCGUU AAU CAAUG...CAA-5'@LB@ | |@LB@ 44 25@LB@@LB@@LB@Energy -8.10 kcal/mol@LB@Hybridization Energy -13.6528 kcal/mol@LB@Unfolding Energy - mRNA 1.79109 kcal/mol@LB@Unfolding Energy - sRNA 3.75931 kcal/mol@LB@@LB@Position - mRNA 196 -- 210@LB@Position - sRNA 26 -- 43@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 26 -- 32@LB@ |
178 |
0.02074 |
0.3753 |
b4324 |
uxuR |
-9.92 |
0.017203 |
196 -- 210 |
8 -- 22 |
fructuronate-inducible hexuronate regulon transcriptional repressor; autorepressor |
|
_____________195_____________211\n_____________|_______________|\n5'-UAC...ACACA______U________CCACC...UGC-3'\n______________ACACCA_GAAAUCUG\n______________||||||_||||||||\n______________UGUGGU_CUUUAGAC\n3'-UUU...AGCAA______C________UACACAA-5'\n_____________|_______________|\n_____________23______________7\n |
203 -- 209 |
9 -- 15 |
-19.4171 kcal/mol |
1.94047 kcal/mol |
7.56026 kcal/mol |
195 211@LB@ | |@LB@5'-UAC...ACACA U CCACC...UGC-3'@LB@ ACACCA GAAAUCUG@LB@ |||||| ||||||||@LB@ UGUGGU CUUUAGAC@LB@3'-UUU...AGCAA C UACACAA-5'@LB@ | |@LB@ 23 7@LB@@LB@@LB@Energy -9.92 kcal/mol@LB@Hybridization Energy -19.4171 kcal/mol@LB@Unfolding Energy - mRNA 1.94047 kcal/mol@LB@Unfolding Energy - sRNA 7.56026 kcal/mol@LB@@LB@Position - mRNA 196 -- 210@LB@Position - sRNA 8 -- 22@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 9 -- 15@LB@ |
84 |
0.005596 |
0.2146 |
b4065 |
yjcE |
-5.39 |
0.265673 |
197 -- 210 |
9 -- 22 |
putative cation/proton antiporter |
|
_____________196____________211\n_____________|______________|\n5'-UAU...AGGGA____AU________UCUUC...UGC-3'\n______________ACGC__GGAAAUCU\n______________||:|__||||||||\n______________UGUG__CCUUUAGA\n3'-UUU...AGCAA____GU________CUACACAA-5'\n_____________|______________|\n_____________23_____________8\n |
203 -- 209 |
10 -- 16 |
-15.8377 kcal/mol |
2.89158 kcal/mol |
7.5588 kcal/mol |
196 211@LB@ | |@LB@5'-UAU...AGGGA AU UCUUC...UGC-3'@LB@ ACGC GGAAAUCU@LB@ ||:| ||||||||@LB@ UGUG CCUUUAGA@LB@3'-UUU...AGCAA GU CUACACAA-5'@LB@ | |@LB@ 23 8@LB@@LB@@LB@Energy -5.39 kcal/mol@LB@Hybridization Energy -15.8377 kcal/mol@LB@Unfolding Energy - mRNA 2.89158 kcal/mol@LB@Unfolding Energy - sRNA 7.5588 kcal/mol@LB@@LB@Position - mRNA 197 -- 210@LB@Position - sRNA 9 -- 22@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 10 -- 16@LB@ |
32 |
0.0009536 |
0.09599 |
b0637 |
rsfS |
-12.32 |
0.003012 |
197 -- 230 |
23 -- 59 |
ribosomal silencing factor |
|
_____________196___________________________________231\n_____________|_____________________________________|\n5'-AUU...GGGGA________A_______________CC____U______AUCGA...UCA-3'\n______________AAACUUGC__GGGUA__AAGCACU__AGGA_UUUGUU\n______________||||||||__::|:|__|||||||__|::|_||:|||\n______________UUUGAACG__UUCGU__UUCGUGA__UUUU_AAGCAA\n3'-UUU...CCUAC________AA_____UC_______AU____U______UGUGG...CAA-5'\n_____________|_____________________________________|\n_____________60____________________________________22\n |
211 -- 217 |
36 -- 42 |
-25.7611 kcal/mol |
7.16036 kcal/mol |
6.27609 kcal/mol |
196 231@LB@ | |@LB@5'-AUU...GGGGA A CC U AUCGA...UCA-3'@LB@ AAACUUGC GGGUA AAGCACU AGGA UUUGUU@LB@ |||||||| ::|:| ||||||| |::| ||:|||@LB@ UUUGAACG UUCGU UUCGUGA UUUU AAGCAA@LB@3'-UUU...CCUAC AA UC AU U UGUGG...CAA-5'@LB@ | |@LB@ 60 22@LB@@LB@@LB@Energy -12.32 kcal/mol@LB@Hybridization Energy -25.7611 kcal/mol@LB@Unfolding Energy - mRNA 7.16036 kcal/mol@LB@Unfolding Energy - sRNA 6.27609 kcal/mol@LB@@LB@Position - mRNA 197 -- 230@LB@Position - sRNA 23 -- 59@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 36 -- 42@LB@ |
107 |
0.009263 |
0.2693 |
b3034 |
nudF |
-7.86 |
0.065629 |
202 -- 214 |
42 -- 54 |
ADP-ribose pyrophosphatase |
|
_____________201___________215\n_____________|_____________|\n5'-AUU...AACAA_________C___CAACC...UUU-3'\n______________UGCUUAAGC_AGA\n______________|||||||||_|||\n______________ACGAAUUCG_UCU\n3'-UUU...UUUGA_________U___UCGUG...CAA-5'\n_____________|_____________|\n_____________55____________41\n |
204 -- 210 |
46 -- 52 |
-15.7149 kcal/mol |
1.83586 kcal/mol |
6.01534 kcal/mol |
201 215@LB@ | |@LB@5'-AUU...AACAA C CAACC...UUU-3'@LB@ UGCUUAAGC AGA@LB@ ||||||||| |||@LB@ ACGAAUUCG UCU@LB@3'-UUU...UUUGA U UCGUG...CAA-5'@LB@ | |@LB@ 55 41@LB@@LB@@LB@Energy -7.86 kcal/mol@LB@Hybridization Energy -15.7149 kcal/mol@LB@Unfolding Energy - mRNA 1.83586 kcal/mol@LB@Unfolding Energy - sRNA 6.01534 kcal/mol@LB@@LB@Position - mRNA 202 -- 214@LB@Position - sRNA 42 -- 54@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 46 -- 52@LB@ |
91 |
0.006547 |
0.2317 |
b1323 |
tyrR |
-8.26 |
0.051378 |
202 -- 222 |
3 -- 23 |
aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase |
|
_____________201___________________223\n_____________|_____________________|\n5'-UCG...UCCCA______U________UU____AAGAC...UUG-3'\n______________UGCGUC_GGAAGUCU__UGUG\n______________|:|::|_||||:|||__||||\n______________AUGUGG_CCUUUAGA__ACAC\n3'-UUU...AAGCA______U________CU____AA-5'\n_____________|_____________________|\n_____________24____________________2\n |
209 -- 215 |
10 -- 16 |
-19.6247 kcal/mol |
3.79223 kcal/mol |
7.5769 kcal/mol |
201 223@LB@ | |@LB@5'-UCG...UCCCA U UU AAGAC...UUG-3'@LB@ UGCGUC GGAAGUCU UGUG@LB@ |:|::| ||||:||| ||||@LB@ AUGUGG CCUUUAGA ACAC@LB@3'-UUU...AAGCA U CU AA-5'@LB@ | |@LB@ 24 2@LB@@LB@@LB@Energy -8.26 kcal/mol@LB@Hybridization Energy -19.6247 kcal/mol@LB@Unfolding Energy - mRNA 3.79223 kcal/mol@LB@Unfolding Energy - sRNA 7.5769 kcal/mol@LB@@LB@Position - mRNA 202 -- 222@LB@Position - sRNA 3 -- 23@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 10 -- 16@LB@ |
156 |
0.01673 |
0.3455 |
b0740 |
tolB |
-6.75 |
0.127692 |
202 -- 229 |
33 -- 61 |
periplasmic protein |
|
_____________201____________________________230\n_____________|______________________________|\n5'-UCC...UAUGA______AG__A_________U_________UUUUC...CCG-3'\n______________UGAAGC__GC_UUA__CGAG_AGCAUUUGG\n______________||||:|__||_|||__|:||_||||:||::\n______________ACUUUG__CG_AAU__GUUC_UCGUGAAUU\n3'-UUU...GCCCU______AA______UC____U_________UUUUA...CAA-5'\n_____________|______________________________|\n_____________62_____________________________32\n |
222 -- 228 |
34 -- 40 |
-20.0945 kcal/mol |
5.97693 kcal/mol |
7.37029 kcal/mol |
201 230@LB@ | |@LB@5'-UCC...UAUGA AG A U UUUUC...CCG-3'@LB@ UGAAGC GC UUA CGAG AGCAUUUGG@LB@ ||||:| || ||| |:|| ||||:||::@LB@ ACUUUG CG AAU GUUC UCGUGAAUU@LB@3'-UUU...GCCCU AA UC U UUUUA...CAA-5'@LB@ | |@LB@ 62 32@LB@@LB@@LB@Energy -6.75 kcal/mol@LB@Hybridization Energy -20.0945 kcal/mol@LB@Unfolding Energy - mRNA 5.97693 kcal/mol@LB@Unfolding Energy - sRNA 7.37029 kcal/mol@LB@@LB@Position - mRNA 202 -- 229@LB@Position - sRNA 33 -- 61@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 34 -- 40@LB@ |
42 |
0.001686 |
0.1293 |
b2733 |
mutS |
-6.21 |
0.172669 |
203 -- 222 |
25 -- 42 |
methyl-directed mismatch repair protein |
|
_____________202__________________223\n_____________|____________________|\n5'-GAU...CCCAU______AA_________U__ACGCC...UGG-3'\n______________GAGUGC__UAGAAAAUU_CG\n______________:||::|__||:||||||_||\n______________UUCGUG__AUUUUUUAA_GC\n3'-UUU...CGUUC______A_____________AAUGU...CAA-5'\n_____________|____________________|\n_____________43___________________24\n |
213 -- 219 |
27 -- 33 |
-10.4027 kcal/mol |
2.54535 kcal/mol |
1.64855 kcal/mol |
202 223@LB@ | |@LB@5'-GAU...CCCAU AA U ACGCC...UGG-3'@LB@ GAGUGC UAGAAAAUU CG@LB@ :||::| ||:|||||| ||@LB@ UUCGUG AUUUUUUAA GC@LB@3'-UUU...CGUUC A AAUGU...CAA-5'@LB@ | |@LB@ 43 24@LB@@LB@@LB@Energy -6.21 kcal/mol@LB@Hybridization Energy -10.4027 kcal/mol@LB@Unfolding Energy - mRNA 2.54535 kcal/mol@LB@Unfolding Energy - sRNA 1.64855 kcal/mol@LB@@LB@Position - mRNA 203 -- 222@LB@Position - sRNA 25 -- 42@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 27 -- 33@LB@ |
113 |
0.009602 |
0.2693 |
b3237 |
argR |
-14.05 |
0.000763 |
205 -- 250 |
27 -- 60 |
l-arginine-responsive arginine metabolism regulon transcriptional regulator |
|
_____________204_____________________________________________251\n_____________|_______________________________________________|\n5'-ACA...UAUGC______CG____________AGAACUAGUUAA___________C___ACUUA...UGC-3'\n______________GAAGCU__GC_UAAGCAAGA____________AGCAUUUAAAG_AUU\n______________|||:||__||_|||||||||____________||||:|||||:_|||\n______________CUUUGA__CG_AUUCGUUCU____________UCGUGAAUUUU_UAA\n3'-UUU...CCCUA______A___A________________________________U___GCAAU...CAA-5'\n_____________|_______________________________________________|\n_____________61______________________________________________26\n |
238 -- 244 |
33 -- 39 |
-28.1986 kcal/mol |
7.87477 kcal/mol |
6.27096 kcal/mol |
204 251@LB@ | |@LB@5'-ACA...UAUGC CG AGAACUAGUUAA C ACUUA...UGC-3'@LB@ GAAGCU GC UAAGCAAGA AGCAUUUAAAG AUU@LB@ |||:|| || ||||||||| ||||:|||||: |||@LB@ CUUUGA CG AUUCGUUCU UCGUGAAUUUU UAA@LB@3'-UUU...CCCUA A A U GCAAU...CAA-5'@LB@ | |@LB@ 61 26@LB@@LB@@LB@Energy -14.05 kcal/mol@LB@Hybridization Energy -28.1986 kcal/mol@LB@Unfolding Energy - mRNA 7.87477 kcal/mol@LB@Unfolding Energy - sRNA 6.27096 kcal/mol@LB@@LB@Position - mRNA 205 -- 250@LB@Position - sRNA 27 -- 60@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 33 -- 39@LB@ |
145 |
0.01456 |
0.3231 |
b1529 |
marC |
-5.50 |
0.250589 |
206 -- 227 |
39 -- 59 |
UPF0056 family inner membrane protein |
|
_____________205____________________228\n_____________|______________________|\n5'-UGG...AUGUU__________A______UU___CUGGG...GCA-3'\n______________AGAUUUGUUU_AAGCAA__GGC\n______________|:|:|||:||_||||||__:||\n______________UUUGAACGAA_UUCGUU__UCG\n3'-UUU...CCUAC_________________CU___UGAAU...CAA-5'\n_____________|______________________|\n_____________60_____________________38\n |
207 -- 213 |
52 -- 58 |
-17.1508 kcal/mol |
5.49588 kcal/mol |
6.15149 kcal/mol |
205 228@LB@ | |@LB@5'-UGG...AUGUU A UU CUGGG...GCA-3'@LB@ AGAUUUGUUU AAGCAA GGC@LB@ |:|:|||:|| |||||| :||@LB@ UUUGAACGAA UUCGUU UCG@LB@3'-UUU...CCUAC CU UGAAU...CAA-5'@LB@ | |@LB@ 60 38@LB@@LB@@LB@Energy -5.50 kcal/mol@LB@Hybridization Energy -17.1508 kcal/mol@LB@Unfolding Energy - mRNA 5.49588 kcal/mol@LB@Unfolding Energy - sRNA 6.15149 kcal/mol@LB@@LB@Position - mRNA 206 -- 227@LB@Position - sRNA 39 -- 59@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 52 -- 58@LB@ |
52 |
0.002466 |
0.1527 |
b3527 |
yhjJ |
-8.40 |
0.046956 |
207 -- 220 |
25 -- 41 |
putative periplasmic M16 family chaperone |
|
_____________206_______________221\n_____________|_________________|\n5'-CUC...UGCAG_________________ACUUU...GGC-3'\n______________GGCAC___AAAAAUUCG\n______________:||||___|||||||||\n______________UCGUG___UUUUUAAGC\n3'-UUU...GUUCU_____AAU_________AAUGU...CAA-5'\n_____________|_________________|\n_____________42________________24\n |
214 -- 220 |
25 -- 31 |
-13.4116 kcal/mol |
3.36563 kcal/mol |
1.64839 kcal/mol |
206 221@LB@ | |@LB@5'-CUC...UGCAG ACUUU...GGC-3'@LB@ GGCAC AAAAAUUCG@LB@ :|||| |||||||||@LB@ UCGUG UUUUUAAGC@LB@3'-UUU...GUUCU AAU AAUGU...CAA-5'@LB@ | |@LB@ 42 24@LB@@LB@@LB@Energy -8.40 kcal/mol@LB@Hybridization Energy -13.4116 kcal/mol@LB@Unfolding Energy - mRNA 3.36563 kcal/mol@LB@Unfolding Energy - sRNA 1.64839 kcal/mol@LB@@LB@Position - mRNA 207 -- 220@LB@Position - sRNA 25 -- 41@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 25 -- 31@LB@ |
173 |
0.01972 |
0.3669 |
b3426 |
glpD |
-5.91 |
0.203159 |
207 -- 224 |
3 -- 20 |
sn-glycerol-3-phosphate dehydrogenase aerobic FAD/NAD(P)-binding |
|
_____________206_________________225\n_____________|___________________|\n5'-AAC...UGGAA____A_________U____AUAGG...AGG-3'\n______________ACCA__AGAUCUGA_UGUG\n______________||||__|:||||||_||||\n______________UGGU__UUUAGACU_ACAC\n3'-UUU...CAAUG____CC_____________AA-5'\n_____________|___________________|\n_____________21__________________2\n |
213 -- 219 |
7 -- 13 |
-16.1802 kcal/mol |
2.74973 kcal/mol |
7.52321 kcal/mol |
206 225@LB@ | |@LB@5'-AAC...UGGAA A U AUAGG...AGG-3'@LB@ ACCA AGAUCUGA UGUG@LB@ |||| |:|||||| ||||@LB@ UGGU UUUAGACU ACAC@LB@3'-UUU...CAAUG CC AA-5'@LB@ | |@LB@ 21 2@LB@@LB@@LB@Energy -5.91 kcal/mol@LB@Hybridization Energy -16.1802 kcal/mol@LB@Unfolding Energy - mRNA 2.74973 kcal/mol@LB@Unfolding Energy - sRNA 7.52321 kcal/mol@LB@@LB@Position - mRNA 207 -- 224@LB@Position - sRNA 3 -- 20@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 7 -- 13@LB@ |
112 |
0.009574 |
0.2693 |
b2494 |
bepA |
-6.13 |
0.179960 |
208 -- 220 |
29 -- 41 |
OM protein maintenance and assembly metalloprotease and chaperone periplasmic |
|
_____________207___________221\n_____________|_____________|\n5'-UGA...GUUCA____G________AAACC...UGC-3'\n______________GGCA_UUGAAAAA\n______________:|||_||:|||||\n______________UCGU_AAUUUUUU\n3'-UUU...GUUCU____G________AAGCA...CAA-5'\n_____________|_____________|\n_____________42____________28\n |
214 -- 220 |
29 -- 35 |
-11.3192 kcal/mol |
3.5632 kcal/mol |
1.62306 kcal/mol |
207 221@LB@ | |@LB@5'-UGA...GUUCA G AAACC...UGC-3'@LB@ GGCA UUGAAAAA@LB@ :||| ||:|||||@LB@ UCGU AAUUUUUU@LB@3'-UUU...GUUCU G AAGCA...CAA-5'@LB@ | |@LB@ 42 28@LB@@LB@@LB@Energy -6.13 kcal/mol@LB@Hybridization Energy -11.3192 kcal/mol@LB@Unfolding Energy - mRNA 3.5632 kcal/mol@LB@Unfolding Energy - sRNA 1.62306 kcal/mol@LB@@LB@Position - mRNA 208 -- 220@LB@Position - sRNA 29 -- 41@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 29 -- 35@LB@ |
194 |
0.02335 |
0.3864 |
b4182 |
yjfJ |
-9.08 |
0.030148 |
209 -- 238 |
10 -- 37 |
PspA/IM30 family protein |
|
_____________208____________________________239\n_____________|______________________________|\n5'-GAA...GGAAU____________AU______UG________GUUUA...AGC-3'\n______________UUUAAAAAGUUU__UUACGC__GGGAAAUC\n______________:|||||||:||:__||||:|__:|||||||\n______________GAAUUUUUUAAG__AAUGUG__UCCUUUAG\n3'-UUU...UUCGU____________C_______G_________ACUAC...CAA-5'\n_____________|______________________________|\n_____________38_____________________________9\n |
232 -- 238 |
10 -- 16 |
-23.4786 kcal/mol |
5.49388 kcal/mol |
8.90309 kcal/mol |
208 239@LB@ | |@LB@5'-GAA...GGAAU AU UG GUUUA...AGC-3'@LB@ UUUAAAAAGUUU UUACGC GGGAAAUC@LB@ :|||||||:||: ||||:| :|||||||@LB@ GAAUUUUUUAAG AAUGUG UCCUUUAG@LB@3'-UUU...UUCGU C G ACUAC...CAA-5'@LB@ | |@LB@ 38 9@LB@@LB@@LB@Energy -9.08 kcal/mol@LB@Hybridization Energy -23.4786 kcal/mol@LB@Unfolding Energy - mRNA 5.49388 kcal/mol@LB@Unfolding Energy - sRNA 8.90309 kcal/mol@LB@@LB@Position - mRNA 209 -- 238@LB@Position - sRNA 10 -- 37@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 10 -- 16@LB@ |
121 |
0.01057 |
0.2813 |
b0452 |
tesB |
-8.75 |
0.037433 |
210 -- 223 |
26 -- 40 |
acyl-CoA thioesterase 2 |
|
_____________209_____________224\n_____________|_______________|\n5'-CAA...GUCAG_______________ACUGA...AGG-3'\n______________GCGC_UAAAAAAUUU\n______________||:|_|||||||||:\n______________CGUG_AUUUUUUAAG\n3'-UUU...UUCUU____A__________CAAUG...CAA-5'\n_____________|_______________|\n_____________41______________25\n |
217 -- 223 |
26 -- 32 |
-10.9054 kcal/mol |
0.50684 kcal/mol |
1.64811 kcal/mol |
209 224@LB@ | |@LB@5'-CAA...GUCAG ACUGA...AGG-3'@LB@ GCGC UAAAAAAUUU@LB@ ||:| |||||||||:@LB@ CGUG AUUUUUUAAG@LB@3'-UUU...UUCUU A CAAUG...CAA-5'@LB@ | |@LB@ 41 25@LB@@LB@@LB@Energy -8.75 kcal/mol@LB@Hybridization Energy -10.9054 kcal/mol@LB@Unfolding Energy - mRNA 0.50684 kcal/mol@LB@Unfolding Energy - sRNA 1.64811 kcal/mol@LB@@LB@Position - mRNA 210 -- 223@LB@Position - sRNA 26 -- 40@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 26 -- 32@LB@ |
6 |
4.032e-05 |
0.02042 |
b0889 |
lrp |
-10.51 |
0.011361 |
210 -- 221 |
37 -- 48 |
leucine-responsive global transcriptional regulator |
|
_____________209__________222\n_____________|____________|\n5'-GUG...UAGAU____________CCUGG...AGC-3'\n______________AGCAAGAAGCGC\n______________||||||||||:|\n______________UCGUUCUUCGUG\n3'-UUU...CGAAU____________AAUUU...CAA-5'\n_____________|____________|\n_____________49___________36\n |
215 -- 221 |
37 -- 43 |
-19.5953 kcal/mol |
3.24674 kcal/mol |
5.83483 kcal/mol |
209 222@LB@ | |@LB@5'-GUG...UAGAU CCUGG...AGC-3'@LB@ AGCAAGAAGCGC@LB@ ||||||||||:|@LB@ UCGUUCUUCGUG@LB@3'-UUU...CGAAU AAUUU...CAA-5'@LB@ | |@LB@ 49 36@LB@@LB@@LB@Energy -10.51 kcal/mol@LB@Hybridization Energy -19.5953 kcal/mol@LB@Unfolding Energy - mRNA 3.24674 kcal/mol@LB@Unfolding Energy - sRNA 5.83483 kcal/mol@LB@@LB@Position - mRNA 210 -- 221@LB@Position - sRNA 37 -- 48@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 37 -- 43@LB@ |
29 |
0.000834 |
0.09021 |
b2798 |
ygdG |
-11.41 |
0.005967 |
211 -- 245 |
24 -- 57 |
Ssb-binding protein misidentified as ExoIX |
|
_____________210_________________________________246\n_____________|___________________________________|\n5'-CCA...UGUUC_________UUGUC__U_____GAAUCUU______CGCAU...UCG-3'\n______________AUUUGCUUA_____GA_GCACU_______AUUCGU\n______________|:|||||||_____||_|||||_______||||||\n______________UGAACGAAU_____CU_CGUGA_______UAAGCA\n3'-UUU...UACUU_________UCGUU__U_____AUUUUU_______AUGUG...CAA-5'\n_____________|___________________________________|\n_____________58__________________________________23\n |
213 -- 219 |
49 -- 55 |
-23.2646 kcal/mol |
5.57825 kcal/mol |
6.27607 kcal/mol |
210 246@LB@ | |@LB@5'-CCA...UGUUC UUGUC U GAAUCUU CGCAU...UCG-3'@LB@ AUUUGCUUA GA GCACU AUUCGU@LB@ |:||||||| || ||||| ||||||@LB@ UGAACGAAU CU CGUGA UAAGCA@LB@3'-UUU...UACUU UCGUU U AUUUUU AUGUG...CAA-5'@LB@ | |@LB@ 58 23@LB@@LB@@LB@Energy -11.41 kcal/mol@LB@Hybridization Energy -23.2646 kcal/mol@LB@Unfolding Energy - mRNA 5.57825 kcal/mol@LB@Unfolding Energy - sRNA 6.27607 kcal/mol@LB@@LB@Position - mRNA 211 -- 245@LB@Position - sRNA 24 -- 57@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 49 -- 55@LB@ |
176 |
0.02022 |
0.37 |
b0495 |
ybbA |
-5.55 |
0.244939 |
212 -- 247 |
24 -- 59 |
putative ABC transporter ATPase |
|
_____________211___________________________________248\n_____________|_____________________________________|\n5'-GCC...GCGGA____A_____G____UCAUCAU___________C___CGGUC...UCA-3'\n______________AAAC_UUGUU_AAGU________CUUAAGAAGU_CGU\n______________||||_|||:|_|||:________|||||:||:|_|||\n______________UUUG_AACGA_UUCG________GAAUUUUUUA_GCA\n3'-UUU...CCUAC__________A____UUCUUCGU__________A___AUGUG...CAA-5'\n_____________|_____________________________________|\n_____________60____________________________________23\n |
235 -- 241 |
30 -- 36 |
-18.4731 kcal/mol |
6.64875 kcal/mol |
6.27609 kcal/mol |
211 248@LB@ | |@LB@5'-GCC...GCGGA A G UCAUCAU C CGGUC...UCA-3'@LB@ AAAC UUGUU AAGU CUUAAGAAGU CGU@LB@ |||| |||:| |||: |||||:||:| |||@LB@ UUUG AACGA UUCG GAAUUUUUUA GCA@LB@3'-UUU...CCUAC A UUCUUCGU A AUGUG...CAA-5'@LB@ | |@LB@ 60 23@LB@@LB@@LB@Energy -5.55 kcal/mol@LB@Hybridization Energy -18.4731 kcal/mol@LB@Unfolding Energy - mRNA 6.64875 kcal/mol@LB@Unfolding Energy - sRNA 6.27609 kcal/mol@LB@@LB@Position - mRNA 212 -- 247@LB@Position - sRNA 24 -- 59@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 30 -- 36@LB@ |
159 |
0.01739 |
0.3504 |
b2426 |
ucpA |
-8.50 |
0.043854 |
215 -- 229 |
36 -- 49 |
furfural resistance protein putative short-chain oxidoreductase |
|
_____________214_____________230\n_____________|_______________|\n5'-GUG...CUCAC________C______GAUUA...UAA-3'\n______________GGGCAAGA_AGCACU\n______________::||||||_||||||\n______________UUCGUUCU_UCGUGA\n3'-UUU...ACGAA_______________AUUUU...CAA-5'\n_____________|_______________|\n_____________50______________35\n |
216 -- 222 |
42 -- 48 |
-19.0239 kcal/mol |
4.4828 kcal/mol |
6.03645 kcal/mol |
214 230@LB@ | |@LB@5'-GUG...CUCAC C GAUUA...UAA-3'@LB@ GGGCAAGA AGCACU@LB@ ::|||||| ||||||@LB@ UUCGUUCU UCGUGA@LB@3'-UUU...ACGAA AUUUU...CAA-5'@LB@ | |@LB@ 50 35@LB@@LB@@LB@Energy -8.50 kcal/mol@LB@Hybridization Energy -19.0239 kcal/mol@LB@Unfolding Energy - mRNA 4.4828 kcal/mol@LB@Unfolding Energy - sRNA 6.03645 kcal/mol@LB@@LB@Position - mRNA 215 -- 229@LB@Position - sRNA 36 -- 49@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 42 -- 48@LB@ |
44 |
0.001875 |
0.1369 |
b4485 |
ytfR |
-11.10 |
0.007490 |
215 -- 227 |
10 -- 22 |
putative sugar ABC transporter ATPase |
|
_____________214___________228\n_____________|_____________|\n5'-CCU...GACCA_____________CUCCG...GCC-3'\n______________ACACCAGGAGAUC\n______________|||||||||:|||\n______________UGUGGUCCUUUAG\n3'-UUU...AGCAA_____________ACUAC...CAA-5'\n_____________|_____________|\n_____________23____________9\n |
221 -- 227 |
10 -- 16 |
-21.5971 kcal/mol |
2.94097 kcal/mol |
7.55838 kcal/mol |
214 228@LB@ | |@LB@5'-CCU...GACCA CUCCG...GCC-3'@LB@ ACACCAGGAGAUC@LB@ |||||||||:|||@LB@ UGUGGUCCUUUAG@LB@3'-UUU...AGCAA ACUAC...CAA-5'@LB@ | |@LB@ 23 9@LB@@LB@@LB@Energy -11.10 kcal/mol@LB@Hybridization Energy -21.5971 kcal/mol@LB@Unfolding Energy - mRNA 2.94097 kcal/mol@LB@Unfolding Energy - sRNA 7.55838 kcal/mol@LB@@LB@Position - mRNA 215 -- 227@LB@Position - sRNA 10 -- 22@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 10 -- 16@LB@ |
104 |
0.008606 |
0.2665 |
b0956 |
matP |
-4.56 |
0.392859 |
215 -- 228 |
25 -- 38 |
Ter macrodomain organizer matS-binding protein |
|
_____________214____________229\n_____________|______________|\n5'-UUU...CAACA_________UC___AAAGC...AAG-3'\n______________ACUUGAAAA__UUG\n______________||||:||||__|:|\n______________UGAAUUUUU__AGC\n3'-UUU...CUUCG_________UA___AAUGU...CAA-5'\n_____________|______________|\n_____________39_____________24\n |
216 -- 222 |
31 -- 37 |
-8.38693 kcal/mol |
2.39574 kcal/mol |
1.4343 kcal/mol |
214 229@LB@ | |@LB@5'-UUU...CAACA UC AAAGC...AAG-3'@LB@ ACUUGAAAA UUG@LB@ ||||:|||| |:|@LB@ UGAAUUUUU AGC@LB@3'-UUU...CUUCG UA AAUGU...CAA-5'@LB@ | |@LB@ 39 24@LB@@LB@@LB@Energy -4.56 kcal/mol@LB@Hybridization Energy -8.38693 kcal/mol@LB@Unfolding Energy - mRNA 2.39574 kcal/mol@LB@Unfolding Energy - sRNA 1.4343 kcal/mol@LB@@LB@Position - mRNA 215 -- 228@LB@Position - sRNA 25 -- 38@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 31 -- 37@LB@ |
95 |
0.007016 |
0.2379 |
b0464 |
acrR |
-8.52 |
0.043413 |
219 -- 228 |
37 -- 46 |
transcriptional repressor |
|
_____________218________229\n_____________|__________|\n5'-AAG...CCAAA__________AAGAA...CGC-3'\n______________CAAGAAGCGC\n______________||||||||:|\n______________GUUCUUCGUG\n3'-UUU...AAUUC__________AAUUU...CAA-5'\n_____________|__________|\n_____________47_________36\n |
222 -- 228 |
37 -- 43 |
-15.2794 kcal/mol |
1.54243 kcal/mol |
5.21654 kcal/mol |
218 229@LB@ | |@LB@5'-AAG...CCAAA AAGAA...CGC-3'@LB@ CAAGAAGCGC@LB@ ||||||||:|@LB@ GUUCUUCGUG@LB@3'-UUU...AAUUC AAUUU...CAA-5'@LB@ | |@LB@ 47 36@LB@@LB@@LB@Energy -8.52 kcal/mol@LB@Hybridization Energy -15.2794 kcal/mol@LB@Unfolding Energy - mRNA 1.54243 kcal/mol@LB@Unfolding Energy - sRNA 5.21654 kcal/mol@LB@@LB@Position - mRNA 219 -- 228@LB@Position - sRNA 37 -- 46@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 37 -- 43@LB@ |
123 |
0.0108 |
0.2828 |
b2606 |
rplS |
-6.81 |
0.122900 |
220 -- 252 |
37 -- 58 |
50S ribosomal subunit protein L19 |
|
_____________219_______________________________253\n_____________|_________________________________|\n5'-AUA...UAAGC______AACAAGAGCAGAUG________C____CUUCC...UUG-3'\n______________AACUUG______________AAGCAGGA_GUAC\n______________||||||______________|||||:||_|:||\n______________UUGAAC______________UUCGUUCU_CGUG\n3'-UUU...CUACU______GAA___________________U____AAUUU...CAA-5'\n_____________|_________________________________|\n_____________59________________________________36\n |
241 -- 247 |
42 -- 48 |
-17.5998 kcal/mol |
4.54246 kcal/mol |
6.24354 kcal/mol |
219 253@LB@ | |@LB@5'-AUA...UAAGC AACAAGAGCAGAUG C CUUCC...UUG-3'@LB@ AACUUG AAGCAGGA GUAC@LB@ |||||| |||||:|| |:||@LB@ UUGAAC UUCGUUCU CGUG@LB@3'-UUU...CUACU GAA U AAUUU...CAA-5'@LB@ | |@LB@ 59 36@LB@@LB@@LB@Energy -6.81 kcal/mol@LB@Hybridization Energy -17.5998 kcal/mol@LB@Unfolding Energy - mRNA 4.54246 kcal/mol@LB@Unfolding Energy - sRNA 6.24354 kcal/mol@LB@@LB@Position - mRNA 220 -- 252@LB@Position - sRNA 37 -- 58@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 42 -- 48@LB@ |
57 |
0.002825 |
0.1597 |
b2233 |
yfaL |
-10.30 |
0.013161 |
220 -- 233 |
34 -- 47 |
adhesin |
|
_____________219____________234\n_____________|______________|\n5'-UAU...UCUAC______________UCUUU...CAU-3'\n______________GCAAGGAGUAUUUA\n______________|||||:||:|:|||\n______________CGUUCUUCGUGAAU\n3'-UUU...GAAUU______________UUUUU...CAA-5'\n_____________|______________|\n_____________48_____________33\n |
227 -- 233 |
34 -- 40 |
-18.4969 kcal/mol |
2.11117 kcal/mol |
6.08192 kcal/mol |
219 234@LB@ | |@LB@5'-UAU...UCUAC UCUUU...CAU-3'@LB@ GCAAGGAGUAUUUA@LB@ |||||:||:|:|||@LB@ CGUUCUUCGUGAAU@LB@3'-UUU...GAAUU UUUUU...CAA-5'@LB@ | |@LB@ 48 33@LB@@LB@@LB@Energy -10.30 kcal/mol@LB@Hybridization Energy -18.4969 kcal/mol@LB@Unfolding Energy - mRNA 2.11117 kcal/mol@LB@Unfolding Energy - sRNA 6.08192 kcal/mol@LB@@LB@Position - mRNA 220 -- 233@LB@Position - sRNA 34 -- 47@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 34 -- 40@LB@ |
101 |
0.007657 |
0.2442 |
b3928 |
zapB |
-6.83 |
0.122013 |
220 -- 239 |
38 -- 54 |
FtsZ stabilizer septal ring assembly factor cell division stimulator |
|
_____________219__________________240\n_____________|____________________|\n5'-UUU...AGAAG________AAACU_______AAAGU...AAG-3'\n______________UGUUUGAG_____GGAAGCA\n______________||:||:||_____:||||||\n______________ACGAAUUC_____UCUUCGU\n3'-UUU...UUUGA________GU__________GAAUU...CAA-5'\n_____________|____________________|\n_____________55___________________37\n |
233 -- 239 |
38 -- 44 |
-16.6983 kcal/mol |
3.7204 kcal/mol |
6.15149 kcal/mol |
219 240@LB@ | |@LB@5'-UUU...AGAAG AAACU AAAGU...AAG-3'@LB@ UGUUUGAG GGAAGCA@LB@ ||:||:|| :||||||@LB@ ACGAAUUC UCUUCGU@LB@3'-UUU...UUUGA GU GAAUU...CAA-5'@LB@ | |@LB@ 55 37@LB@@LB@@LB@Energy -6.83 kcal/mol@LB@Hybridization Energy -16.6983 kcal/mol@LB@Unfolding Energy - mRNA 3.7204 kcal/mol@LB@Unfolding Energy - sRNA 6.15149 kcal/mol@LB@@LB@Position - mRNA 220 -- 239@LB@Position - sRNA 38 -- 54@LB@Position Seed - mRNA 233 -- 239@LB@Position Seed - sRNA 38 -- 44@LB@ |
87 |
0.005861 |
0.217 |
b3083 |
higB |
-4.01 |
0.492619 |
220 -- 233 |
28 -- 42 |
mRNA interferase toxin of the HigB-HigA toxin-antitoxin system |
|
_____________219_____________234\n_____________|_______________|\n5'-GCA...UCAAA_______________GCUGC...GAU-3'\n______________AAGCAUU_GAAAGAU\n______________|||||:|_:|||:||\n______________UUCGUGA_UUUUUUA\n3'-UUU...CGUUC_______A_______AGCAA...CAA-5'\n_____________|_______________|\n_____________43______________27\n |
220 -- 226 |
36 -- 42 |
-9.16043 kcal/mol |
3.51035 kcal/mol |
1.63711 kcal/mol |
219 234@LB@ | |@LB@5'-GCA...UCAAA GCUGC...GAU-3'@LB@ AAGCAUU GAAAGAU@LB@ |||||:| :|||:||@LB@ UUCGUGA UUUUUUA@LB@3'-UUU...CGUUC A AGCAA...CAA-5'@LB@ | |@LB@ 43 27@LB@@LB@@LB@Energy -4.01 kcal/mol@LB@Hybridization Energy -9.16043 kcal/mol@LB@Unfolding Energy - mRNA 3.51035 kcal/mol@LB@Unfolding Energy - sRNA 1.63711 kcal/mol@LB@@LB@Position - mRNA 220 -- 233@LB@Position - sRNA 28 -- 42@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 36 -- 42@LB@ |
79 |
0.005218 |
0.2128 |
b1264 |
trpE |
-7.84 |
0.066605 |
225 -- 250 |
34 -- 59 |
component I of anthranilate synthase |
|
_____________224__________________________251\n_____________|____________________________|\n5'-UGU...CUCUC_________AACCU______________UCGCG...CGG-3'\n______________GAAC_UGCU_____GCGA_AGGCGCUUA\n______________:|||_||||_____||:|_|:||:||||\n______________UUUG_ACGA_____CGUU_UUCGUGAAU\n3'-UUU...CCUAC____A____AUU______C_________UUUUU...CAA-5'\n_____________|____________________________|\n_____________60___________________________33\n |
244 -- 250 |
34 -- 40 |
-20.2106 kcal/mol |
6.10702 kcal/mol |
6.26371 kcal/mol |
224 251@LB@ | |@LB@5'-UGU...CUCUC AACCU UCGCG...CGG-3'@LB@ GAAC UGCU GCGA AGGCGCUUA@LB@ :||| |||| ||:| |:||:||||@LB@ UUUG ACGA CGUU UUCGUGAAU@LB@3'-UUU...CCUAC A AUU C UUUUU...CAA-5'@LB@ | |@LB@ 60 33@LB@@LB@@LB@Energy -7.84 kcal/mol@LB@Hybridization Energy -20.2106 kcal/mol@LB@Unfolding Energy - mRNA 6.10702 kcal/mol@LB@Unfolding Energy - sRNA 6.26371 kcal/mol@LB@@LB@Position - mRNA 225 -- 250@LB@Position - sRNA 34 -- 59@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 34 -- 40@LB@ |
155 |
0.01672 |
0.3455 |
b1686 |
menI |
-4.77 |
0.356790 |
227 -- 235 |
36 -- 44 |
1 4-dihydroxy-2-naphthoyl-CoA hydrolase |
|
_____________226_______236\n_____________|_________|\n5'-GGC...ACCCU_________GAAUG...AUG-3'\n______________GGAAGCACU\n______________:||||||||\n______________UCUUCGUGA\n3'-UUU...UUCGU_________AUUUU...CAA-5'\n_____________|_________|\n_____________45________35\n |
229 -- 235 |
36 -- 42 |
-13.4239 kcal/mol |
4.1512 kcal/mol |
4.5009 kcal/mol |
226 236@LB@ | |@LB@5'-GGC...ACCCU GAAUG...AUG-3'@LB@ GGAAGCACU@LB@ :||||||||@LB@ UCUUCGUGA@LB@3'-UUU...UUCGU AUUUU...CAA-5'@LB@ | |@LB@ 45 35@LB@@LB@@LB@Energy -4.77 kcal/mol@LB@Hybridization Energy -13.4239 kcal/mol@LB@Unfolding Energy - mRNA 4.1512 kcal/mol@LB@Unfolding Energy - sRNA 4.5009 kcal/mol@LB@@LB@Position - mRNA 227 -- 235@LB@Position - sRNA 36 -- 44@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 36 -- 42@LB@ |
130 |
0.01234 |
0.3033 |
b2958 |
yggN |
-5.61 |
0.236844 |
227 -- 233 |
35 -- 41 |
DUF2884 family putative periplasmic protein |
|
_____________226_____234\n_____________|_______|\n5'-ACG...GCGGC_______UCAGU...UUG-3'\n______________AGCACUU\n______________|||||||\n______________UCGUGAA\n3'-UUU...GUUCU_______UUUUU...CAA-5'\n_____________|_______|\n_____________42______34\n |
227 -- 233 |
35 -- 41 |
-8.1936 kcal/mol |
0.976472 kcal/mol |
1.6033 kcal/mol |
226 234@LB@ | |@LB@5'-ACG...GCGGC UCAGU...UUG-3'@LB@ AGCACUU@LB@ |||||||@LB@ UCGUGAA@LB@3'-UUU...GUUCU UUUUU...CAA-5'@LB@ | |@LB@ 42 34@LB@@LB@@LB@Energy -5.61 kcal/mol@LB@Hybridization Energy -8.1936 kcal/mol@LB@Unfolding Energy - mRNA 0.976472 kcal/mol@LB@Unfolding Energy - sRNA 1.6033 kcal/mol@LB@@LB@Position - mRNA 227 -- 233@LB@Position - sRNA 35 -- 41@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 35 -- 41@LB@ |
189 |
0.02233 |
0.3796 |
b3417 |
malP |
-8.63 |
0.040366 |
227 -- 245 |
35 -- 53 |
maltodextrin phosphorylase |
|
_____________226_________________246\n_____________|___________________|\n5'-ACA...GAUAA__AAUUU____________UCACG...GCC-3'\n______________GC_____CAGGAAGCGCUU\n______________||_____||:|||||:|||\n______________CG_____GUUCUUCGUGAA\n3'-UUU...UUGAA__AAUUC____________UUUUU...CAA-5'\n_____________|___________________|\n_____________54__________________34\n |
239 -- 245 |
35 -- 41 |
-18.4249 kcal/mol |
3.68713 kcal/mol |
6.10399 kcal/mol |
226 246@LB@ | |@LB@5'-ACA...GAUAA AAUUU UCACG...GCC-3'@LB@ GC CAGGAAGCGCUU@LB@ || ||:|||||:|||@LB@ CG GUUCUUCGUGAA@LB@3'-UUU...UUGAA AAUUC UUUUU...CAA-5'@LB@ | |@LB@ 54 34@LB@@LB@@LB@Energy -8.63 kcal/mol@LB@Hybridization Energy -18.4249 kcal/mol@LB@Unfolding Energy - mRNA 3.68713 kcal/mol@LB@Unfolding Energy - sRNA 6.10399 kcal/mol@LB@@LB@Position - mRNA 227 -- 245@LB@Position - sRNA 35 -- 53@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 35 -- 41@LB@ |
81 |
0.005437 |
0.2146 |
b1073 |
flgB |
-5.23 |
0.286610 |
229 -- 247 |
36 -- 53 |
flagellar component of cell-proximal portion of basal-body rod |
|
_____________228_________________248\n_____________|___________________|\n5'-UGA...CUUAC____UCAA___________CAAUC...CCG-3'\n______________GUUU____CAAGAGGCGCU\n______________|:||____|||||:||:||\n______________CGAA____GUUCUUCGUGA\n3'-UUU...UUGAA____UUC____________AUUUU...CAA-5'\n_____________|___________________|\n_____________54__________________35\n |
241 -- 247 |
36 -- 42 |
-18.0666 kcal/mol |
6.73003 kcal/mol |
6.10238 kcal/mol |
228 248@LB@ | |@LB@5'-UGA...CUUAC UCAA CAAUC...CCG-3'@LB@ GUUU CAAGAGGCGCU@LB@ |:|| |||||:||:||@LB@ CGAA GUUCUUCGUGA@LB@3'-UUU...UUGAA UUC AUUUU...CAA-5'@LB@ | |@LB@ 54 35@LB@@LB@@LB@Energy -5.23 kcal/mol@LB@Hybridization Energy -18.0666 kcal/mol@LB@Unfolding Energy - mRNA 6.73003 kcal/mol@LB@Unfolding Energy - sRNA 6.10238 kcal/mol@LB@@LB@Position - mRNA 229 -- 247@LB@Position - sRNA 36 -- 53@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 36 -- 42@LB@ |
132 |
0.01257 |
0.3067 |
b2516 |
rodZ |
-8.98 |
0.032240 |
231 -- 240 |
34 -- 43 |
MreB assembly cytoskeletal protein |
|
_____________230________241\n_____________|__________|\n5'-UAA...AAAAU__________CUACC...UUG-3'\n______________GAAGCACUUA\n______________||||||||||\n______________CUUCGUGAAU\n3'-UUU...UCGUU__________UUUUU...CAA-5'\n_____________|__________|\n_____________44_________33\n |
234 -- 240 |
34 -- 40 |
-13.7965 kcal/mol |
1.10051 kcal/mol |
3.71643 kcal/mol |
230 241@LB@ | |@LB@5'-UAA...AAAAU CUACC...UUG-3'@LB@ GAAGCACUUA@LB@ ||||||||||@LB@ CUUCGUGAAU@LB@3'-UUU...UCGUU UUUUU...CAA-5'@LB@ | |@LB@ 44 33@LB@@LB@@LB@Energy -8.98 kcal/mol@LB@Hybridization Energy -13.7965 kcal/mol@LB@Unfolding Energy - mRNA 1.10051 kcal/mol@LB@Unfolding Energy - sRNA 3.71643 kcal/mol@LB@@LB@Position - mRNA 231 -- 240@LB@Position - sRNA 34 -- 43@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 34 -- 40@LB@ |
63 |
0.003338 |
0.1645 |
b2671 |
ygaC |
-8.88 |
0.034356 |
231 -- 246 |
25 -- 40 |
uncharacterized protein |
|
_____________230______________247\n_____________|________________|\n5'-UAU...CGCGC____________G___GUUUU...AAA-3'\n______________GUACUUGAAAAA_UCG\n______________|:||||:|||||_|||\n______________CGUGAAUUUUUU_AGC\n3'-UUU...UUCUU____________A___AAUGU...CAA-5'\n_____________|________________|\n_____________41_______________24\n |
231 -- 237 |
34 -- 40 |
-15.9773 kcal/mol |
5.44668 kcal/mol |
1.64821 kcal/mol |
230 247@LB@ | |@LB@5'-UAU...CGCGC G GUUUU...AAA-3'@LB@ GUACUUGAAAAA UCG@LB@ |:||||:||||| |||@LB@ CGUGAAUUUUUU AGC@LB@3'-UUU...UUCUU A AAUGU...CAA-5'@LB@ | |@LB@ 41 24@LB@@LB@@LB@Energy -8.88 kcal/mol@LB@Hybridization Energy -15.9773 kcal/mol@LB@Unfolding Energy - mRNA 5.44668 kcal/mol@LB@Unfolding Energy - sRNA 1.64821 kcal/mol@LB@@LB@Position - mRNA 231 -- 246@LB@Position - sRNA 25 -- 40@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 34 -- 40@LB@ |
131 |
0.01234 |
0.3033 |
b4139 |
aspA |
-5.03 |
0.315570 |
237 -- 252 |
26 -- 41 |
aspartate ammonia-lyase |
|
_____________236______________253\n_____________|________________|\n5'-GAU...UGUUG_____CA_________CAGCU...ACU-3'\n______________GGUAC__GGGAAGUUC\n______________:|:||__:::||:|||\n______________UCGUG__UUUUUUAAG\n3'-UUU...GUUCU_____AA_________CAAUG...CAA-5'\n_____________|________________|\n_____________42_______________25\n |
246 -- 252 |
26 -- 32 |
-10.8102 kcal/mol |
4.127 kcal/mol |
1.64829 kcal/mol |
236 253@LB@ | |@LB@5'-GAU...UGUUG CA CAGCU...ACU-3'@LB@ GGUAC GGGAAGUUC@LB@ :|:|| :::||:|||@LB@ UCGUG UUUUUUAAG@LB@3'-UUU...GUUCU AA CAAUG...CAA-5'@LB@ | |@LB@ 42 25@LB@@LB@@LB@Energy -5.03 kcal/mol@LB@Hybridization Energy -10.8102 kcal/mol@LB@Unfolding Energy - mRNA 4.127 kcal/mol@LB@Unfolding Energy - sRNA 1.64829 kcal/mol@LB@@LB@Position - mRNA 237 -- 252@LB@Position - sRNA 26 -- 41@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 26 -- 32@LB@ |
140 |
0.01344 |
0.3093 |
b0426 |
yajQ |
-3.92 |
0.510019 |
240 -- 246 |
37 -- 43 |
phage Phi6 host factor ATP/GTP binding protein |
|
_____________239_____247\n_____________|_______|\n5'-UAA...UUCAG_______GUAAC...GUA-3'\n______________GAAGCAC\n______________|||||||\n______________CUUCGUG\n3'-UUU...UCGUU_______AAUUU...CAA-5'\n_____________|_______|\n_____________44______36\n |
240 -- 246 |
37 -- 43 |
-10.1802 kcal/mol |
2.59742 kcal/mol |
3.6595 kcal/mol |
239 247@LB@ | |@LB@5'-UAA...UUCAG GUAAC...GUA-3'@LB@ GAAGCAC@LB@ |||||||@LB@ CUUCGUG@LB@3'-UUU...UCGUU AAUUU...CAA-5'@LB@ | |@LB@ 44 36@LB@@LB@@LB@Energy -3.92 kcal/mol@LB@Hybridization Energy -10.1802 kcal/mol@LB@Unfolding Energy - mRNA 2.59742 kcal/mol@LB@Unfolding Energy - sRNA 3.6595 kcal/mol@LB@@LB@Position - mRNA 240 -- 246@LB@Position - sRNA 37 -- 43@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 37 -- 43@LB@ |
17 |
0.0004446 |
0.08107 |
b1976 |
mtfA |
-9.25 |
0.026966 |
241 -- 268 |
36 -- 59 |
anti-repressor for DgsA(Mlc) |
|
_____________240___________________________269\n_____________|_____________________________|\n5'-AUA...ACAUC________CCUUCCCU_____________AUCGA...AAC-3'\n______________AAAC_UGC________GGCAGGAAGCACU\n______________||||_|||________:|||:||||||||\n______________UUUG_ACG________UCGUUCUUCGUGA\n3'-UUU...CCUAC____A___AAU__________________AUUUU...CAA-5'\n_____________|_____________________________|\n_____________60____________________________35\n |
262 -- 268 |
36 -- 42 |
-23.9855 kcal/mol |
8.48573 kcal/mol |
6.24948 kcal/mol |
240 269@LB@ | |@LB@5'-AUA...ACAUC CCUUCCCU AUCGA...AAC-3'@LB@ AAAC UGC GGCAGGAAGCACU@LB@ |||| ||| :|||:||||||||@LB@ UUUG ACG UCGUUCUUCGUGA@LB@3'-UUU...CCUAC A AAU AUUUU...CAA-5'@LB@ | |@LB@ 60 35@LB@@LB@@LB@Energy -9.25 kcal/mol@LB@Hybridization Energy -23.9855 kcal/mol@LB@Unfolding Energy - mRNA 8.48573 kcal/mol@LB@Unfolding Energy - sRNA 6.24948 kcal/mol@LB@@LB@Position - mRNA 241 -- 268@LB@Position - sRNA 36 -- 59@LB@Position Seed - mRNA 262 -- 268@LB@Position Seed - sRNA 36 -- 42@LB@ |
137 |
0.01315 |
0.3087 |
b2239 |
glpQ |
-7.04 |
0.107729 |
242 -- 248 |
36 -- 42 |
periplasmic glycerophosphodiester phosphodiesterase |
|
_____________241_____249\n_____________|_______|\n5'-CGG...AUGAU_______AUAGU...UCA-3'\n______________GAGCACU\n______________:||||||\n______________UUCGUGA\n3'-UUU...CGUUC_______AUUUU...CAA-5'\n_____________|_______|\n_____________43______35\n |
242 -- 248 |
36 -- 42 |
-9.09813 kcal/mol |
0.455964 kcal/mol |
1.60154 kcal/mol |
241 249@LB@ | |@LB@5'-CGG...AUGAU AUAGU...UCA-3'@LB@ GAGCACU@LB@ :||||||@LB@ UUCGUGA@LB@3'-UUU...CGUUC AUUUU...CAA-5'@LB@ | |@LB@ 43 35@LB@@LB@@LB@Energy -7.04 kcal/mol@LB@Hybridization Energy -9.09813 kcal/mol@LB@Unfolding Energy - mRNA 0.455964 kcal/mol@LB@Unfolding Energy - sRNA 1.60154 kcal/mol@LB@@LB@Position - mRNA 242 -- 248@LB@Position - sRNA 36 -- 42@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 36 -- 42@LB@ |
59 |
0.003153 |
0.1645 |
b1220 |
ychO |
-8.71 |
0.038404 |
242 -- 262 |
37 -- 56 |
putative invasin |
|
_____________241___________________263\n_____________|_____________________|\n5'-UCA...UUACU________U______C_____AGCUA...CAA-3'\n______________CUUGCUUG_AGCAGG_GGUAC\n______________|||||||:_||||:|_:|:||\n______________GAACGAAU_UCGUUC_UCGUG\n3'-UUU...ACUUU_______________U_____AAUUU...CAA-5'\n_____________|_____________________|\n_____________57____________________36\n |
242 -- 248 |
50 -- 56 |
-24.8668 kcal/mol |
9.95535 kcal/mol |
6.20049 kcal/mol |
241 263@LB@ | |@LB@5'-UCA...UUACU U C AGCUA...CAA-3'@LB@ CUUGCUUG AGCAGG GGUAC@LB@ |||||||: ||||:| :|:||@LB@ GAACGAAU UCGUUC UCGUG@LB@3'-UUU...ACUUU U AAUUU...CAA-5'@LB@ | |@LB@ 57 36@LB@@LB@@LB@Energy -8.71 kcal/mol@LB@Hybridization Energy -24.8668 kcal/mol@LB@Unfolding Energy - mRNA 9.95535 kcal/mol@LB@Unfolding Energy - sRNA 6.20049 kcal/mol@LB@@LB@Position - mRNA 242 -- 262@LB@Position - sRNA 37 -- 56@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 50 -- 56@LB@ |
143 |
0.01412 |
0.3181 |
b0642 |
leuS |
-6.82 |
0.122159 |
244 -- 266 |
37 -- 58 |
leucyl-tRNA synthetase |
|
_____________243_____________________267\n_____________|_______________________|\n5'-AAU...AGUAC_____CA_____A__________ACAUU...AGA-3'\n______________AGCUU__UUGGG_UGAGAAGCGC\n______________|:|||__||::|_::||||||:|\n______________UUGAA__AAUUC_GUUCUUCGUG\n3'-UUU...CUACU_____CG________________AAUUU...CAA-5'\n_____________|_______________________|\n_____________59______________________36\n |
260 -- 266 |
37 -- 43 |
-20.1861 kcal/mol |
7.11823 kcal/mol |
6.24354 kcal/mol |
243 267@LB@ | |@LB@5'-AAU...AGUAC CA A ACAUU...AGA-3'@LB@ AGCUU UUGGG UGAGAAGCGC@LB@ |:||| ||::| ::||||||:|@LB@ UUGAA AAUUC GUUCUUCGUG@LB@3'-UUU...CUACU CG AAUUU...CAA-5'@LB@ | |@LB@ 59 36@LB@@LB@@LB@Energy -6.82 kcal/mol@LB@Hybridization Energy -20.1861 kcal/mol@LB@Unfolding Energy - mRNA 7.11823 kcal/mol@LB@Unfolding Energy - sRNA 6.24354 kcal/mol@LB@@LB@Position - mRNA 244 -- 266@LB@Position - sRNA 37 -- 58@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 37 -- 43@LB@ |
171 |
0.01957 |
0.3668 |
b2498 |
upp |
-5.84 |
0.210430 |
244 -- 265 |
42 -- 61 |
uracil phosphoribosyltransferase |
|
_____________243____________________266\n_____________|______________________|\n5'-GGC...CAAGC_______GA___G_________UAUCA...CCG-3'\n______________UGGGACU__UGC_UGAGCAAGA\n______________||::|||__|||_|:|||||||\n______________ACUUUGA__ACG_AUUCGUUCU\n3'-UUU...GCCCU____________A_________UCGUG...CAA-5'\n_____________|______________________|\n_____________62_____________________41\n |
259 -- 265 |
42 -- 48 |
-21.1169 kcal/mol |
8.03919 kcal/mol |
7.23689 kcal/mol |
243 266@LB@ | |@LB@5'-GGC...CAAGC GA G UAUCA...CCG-3'@LB@ UGGGACU UGC UGAGCAAGA@LB@ ||::||| ||| |:|||||||@LB@ ACUUUGA ACG AUUCGUUCU@LB@3'-UUU...GCCCU A UCGUG...CAA-5'@LB@ | |@LB@ 62 41@LB@@LB@@LB@Energy -5.84 kcal/mol@LB@Hybridization Energy -21.1169 kcal/mol@LB@Unfolding Energy - mRNA 8.03919 kcal/mol@LB@Unfolding Energy - sRNA 7.23689 kcal/mol@LB@@LB@Position - mRNA 244 -- 265@LB@Position - sRNA 42 -- 61@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 42 -- 48@LB@ |
26 |
0.0007705 |
0.09021 |
b3991 |
thiG |
-9.33 |
0.025562 |
246 -- 261 |
25 -- 41 |
thiamine biosynthesis ThiGH complex subunit |
|
_____________245_______________262\n_____________|_________________|\n5'-GCA...UUACC_____A___________CUUCU...CCG-3'\n______________GGCAC__GGGAAAUUCG\n______________:||||__:::|||||||\n______________UCGUG__UUUUUUAAGC\n3'-UUU...GUUCU_____AA__________AAUGU...CAA-5'\n_____________|_________________|\n_____________42________________24\n |
255 -- 261 |
25 -- 31 |
-14.087 kcal/mol |
3.10801 kcal/mol |
1.64839 kcal/mol |
245 262@LB@ | |@LB@5'-GCA...UUACC A CUUCU...CCG-3'@LB@ GGCAC GGGAAAUUCG@LB@ :|||| :::|||||||@LB@ UCGUG UUUUUUAAGC@LB@3'-UUU...GUUCU AA AAUGU...CAA-5'@LB@ | |@LB@ 42 24@LB@@LB@@LB@Energy -9.33 kcal/mol@LB@Hybridization Energy -14.087 kcal/mol@LB@Unfolding Energy - mRNA 3.10801 kcal/mol@LB@Unfolding Energy - sRNA 1.64839 kcal/mol@LB@@LB@Position - mRNA 246 -- 261@LB@Position - sRNA 25 -- 41@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 25 -- 31@LB@ |
152 |
0.01589 |
0.3359 |
b3428 |
glgP |
-3.42 |
0.610648 |
252 -- 258 |
36 -- 42 |
glycogen phosphorylase |
|
_____________251_____259\n_____________|_______|\n5'-CCA...CUCUU_______CUAUC...CGG-3'\n______________AAGCACU\n______________|||||||\n______________UUCGUGA\n3'-UUU...CGUUC_______AUUUU...CAA-5'\n_____________|_______|\n_____________43______35\n |
252 -- 258 |
36 -- 42 |
-8.34293 kcal/mol |
3.32239 kcal/mol |
1.60154 kcal/mol |
251 259@LB@ | |@LB@5'-CCA...CUCUU CUAUC...CGG-3'@LB@ AAGCACU@LB@ |||||||@LB@ UUCGUGA@LB@3'-UUU...CGUUC AUUUU...CAA-5'@LB@ | |@LB@ 43 35@LB@@LB@@LB@Energy -3.42 kcal/mol@LB@Hybridization Energy -8.34293 kcal/mol@LB@Unfolding Energy - mRNA 3.32239 kcal/mol@LB@Unfolding Energy - sRNA 1.60154 kcal/mol@LB@@LB@Position - mRNA 252 -- 258@LB@Position - sRNA 36 -- 42@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 36 -- 42@LB@ |
23 |
0.000685 |
0.09021 |
b3780 |
rhlB |
-7.99 |
0.060609 |
254 -- 278 |
29 -- 60 |
ATP-dependent RNA helicase |
|
_____________253______________________________279\n_____________|________________________________|\n5'-UCG...CAUCC____G_________________C_________AAAGG...CGC-3'\n______________GAAG_UUGU_______AGAAGC_CUUGAAAAA\n______________|||:_|||:_______||||||_|||:|||||\n______________CUUU_AACG_______UCUUCG_GAAUUUUUU\n3'-UUU...CCCUA____G____AAUUCGU______U_________AAGCA...CAA-5'\n_____________|________________________________|\n_____________61_______________________________28\n |
270 -- 276 |
31 -- 37 |
-19.7636 kcal/mol |
5.50064 kcal/mol |
6.27092 kcal/mol |
253 279@LB@ | |@LB@5'-UCG...CAUCC G C AAAGG...CGC-3'@LB@ GAAG UUGU AGAAGC CUUGAAAAA@LB@ |||: |||: |||||| |||:|||||@LB@ CUUU AACG UCUUCG GAAUUUUUU@LB@3'-UUU...CCCUA G AAUUCGU U AAGCA...CAA-5'@LB@ | |@LB@ 61 28@LB@@LB@@LB@Energy -7.99 kcal/mol@LB@Hybridization Energy -19.7636 kcal/mol@LB@Unfolding Energy - mRNA 5.50064 kcal/mol@LB@Unfolding Energy - sRNA 6.27092 kcal/mol@LB@@LB@Position - mRNA 254 -- 278@LB@Position - sRNA 29 -- 60@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 31 -- 37@LB@ |
90 |
0.006331 |
0.2266 |
b1710 |
btuE |
-7.57 |
0.078405 |
256 -- 270 |
25 -- 39 |
glutathione peroxidase |
|
_____________255_____________271\n_____________|_______________|\n5'-GCA...GACCA____G__________CCGGU...UCG-3'\n______________CGCU_GAGAAGUUCG\n______________|:||_:|:||:||||\n______________GUGA_UUUUUUAAGC\n3'-UUU...UCUUC____A__________AAUGU...CAA-5'\n_____________|_______________|\n_____________40______________24\n |
264 -- 270 |
25 -- 31 |
-13.949 kcal/mol |
4.72897 kcal/mol |
1.64678 kcal/mol |
255 271@LB@ | |@LB@5'-GCA...GACCA G CCGGU...UCG-3'@LB@ CGCU GAGAAGUUCG@LB@ |:|| :|:||:||||@LB@ GUGA UUUUUUAAGC@LB@3'-UUU...UCUUC A AAUGU...CAA-5'@LB@ | |@LB@ 40 24@LB@@LB@@LB@Energy -7.57 kcal/mol@LB@Hybridization Energy -13.949 kcal/mol@LB@Unfolding Energy - mRNA 4.72897 kcal/mol@LB@Unfolding Energy - sRNA 1.64678 kcal/mol@LB@@LB@Position - mRNA 256 -- 270@LB@Position - sRNA 25 -- 39@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 25 -- 31@LB@ |
142 |
0.01375 |
0.3119 |
b4166 |
queG |
-9.76 |
0.019130 |
257 -- 284 |
36 -- 60 |
epoxyqueuosine reductase cobalamine-stimulated; queosine biosynthesis |
|
_____________256__________________________285\n_____________|____________________________|\n5'-CGC...GGGCU______GG____UC______U_______ACCGA...UCA-3'\n______________GGAACU__GCUU__AGCAGG_AGGUAUU\n______________|:||||__||||__||||:|_|:|:|:|\n______________CUUUGA__CGAA__UCGUUC_UUCGUGA\n3'-UUU...CCCUA______A_____U_______________AUUUU...CAA-5'\n_____________|____________________________|\n_____________61___________________________35\n |
278 -- 284 |
36 -- 42 |
-22.8123 kcal/mol |
6.80174 kcal/mol |
6.24973 kcal/mol |
256 285@LB@ | |@LB@5'-CGC...GGGCU GG UC U ACCGA...UCA-3'@LB@ GGAACU GCUU AGCAGG AGGUAUU@LB@ |:|||| |||| ||||:| |:|:|:|@LB@ CUUUGA CGAA UCGUUC UUCGUGA@LB@3'-UUU...CCCUA A U AUUUU...CAA-5'@LB@ | |@LB@ 61 35@LB@@LB@@LB@Energy -9.76 kcal/mol@LB@Hybridization Energy -22.8123 kcal/mol@LB@Unfolding Energy - mRNA 6.80174 kcal/mol@LB@Unfolding Energy - sRNA 6.24973 kcal/mol@LB@@LB@Position - mRNA 257 -- 284@LB@Position - sRNA 36 -- 60@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 36 -- 42@LB@ |
136 |
0.01308 |
0.3087 |
b0131 |
panD |
-6.12 |
0.181240 |
260 -- 282 |
17 -- 40 |
aspartate 1-decarboxylase |
|
_____________259______________________283\n_____________|________________________|\n5'-AUU...GACCU_____AU_________________UUGAC...UUG-3'\n______________GCACU__GAAGGUUC_UUGCGCCA\n______________|||||__:||::|||_||:|:|||\n______________CGUGA__UUUUUAAG_AAUGUGGU\n3'-UUU...UUCUU_____AU________C________CCUUU...CAA-5'\n_____________|________________________|\n_____________41_______________________16\n |
268 -- 274 |
26 -- 32 |
-23.1255 kcal/mol |
7.80932 kcal/mol |
9.19627 kcal/mol |
259 283@LB@ | |@LB@5'-AUU...GACCU AU UUGAC...UUG-3'@LB@ GCACU GAAGGUUC UUGCGCCA@LB@ ||||| :||::||| ||:|:|||@LB@ CGUGA UUUUUAAG AAUGUGGU@LB@3'-UUU...UUCUU AU C CCUUU...CAA-5'@LB@ | |@LB@ 41 16@LB@@LB@@LB@Energy -6.12 kcal/mol@LB@Hybridization Energy -23.1255 kcal/mol@LB@Unfolding Energy - mRNA 7.80932 kcal/mol@LB@Unfolding Energy - sRNA 9.19627 kcal/mol@LB@@LB@Position - mRNA 260 -- 282@LB@Position - sRNA 17 -- 40@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 26 -- 32@LB@ |
144 |
0.01453 |
0.3231 |
b3614 |
yibQ |
-4.49 |
0.404320 |
261 -- 267 |
34 -- 40 |
putative polysaccharide deacetylase |
|
_____________260_____268\n_____________|_______|\n5'-UGG...CCCCC_______CUGGC...UUG-3'\n______________GUACUUG\n______________|:||||:\n______________CGUGAAU\n3'-UUU...UUCUU_______UUUUU...CAA-5'\n_____________|_______|\n_____________41______33\n |
261 -- 267 |
34 -- 40 |
-7.10274 kcal/mol |
0.998159 kcal/mol |
1.61352 kcal/mol |
260 268@LB@ | |@LB@5'-UGG...CCCCC CUGGC...UUG-3'@LB@ GUACUUG@LB@ |:||||:@LB@ CGUGAAU@LB@3'-UUU...UUCUU UUUUU...CAA-5'@LB@ | |@LB@ 41 33@LB@@LB@@LB@Energy -4.49 kcal/mol@LB@Hybridization Energy -7.10274 kcal/mol@LB@Unfolding Energy - mRNA 0.998159 kcal/mol@LB@Unfolding Energy - sRNA 1.61352 kcal/mol@LB@@LB@Position - mRNA 261 -- 267@LB@Position - sRNA 34 -- 40@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 34 -- 40@LB@ |
150 |
0.01547 |
0.3321 |
b3736 |
atpF |
-5.86 |
0.208717 |
262 -- 272 |
37 -- 47 |
F0 sector of membrane-bound ATP synthase subunit b |
|
_____________261_________273\n_____________|___________|\n5'-AUU...GUUCU___U_______GUAUG...UCG-3'\n______________GCA_GAAGUAC\n______________|||_||||:||\n______________CGU_CUUCGUG\n3'-UUU...GAAUU___U_______AAUUU...CAA-5'\n_____________|___________|\n_____________48__________36\n |
266 -- 272 |
37 -- 43 |
-12.6044 kcal/mol |
1.50868 kcal/mol |
5.23944 kcal/mol |
261 273@LB@ | |@LB@5'-AUU...GUUCU U GUAUG...UCG-3'@LB@ GCA GAAGUAC@LB@ ||| ||||:||@LB@ CGU CUUCGUG@LB@3'-UUU...GAAUU U AAUUU...CAA-5'@LB@ | |@LB@ 48 36@LB@@LB@@LB@Energy -5.86 kcal/mol@LB@Hybridization Energy -12.6044 kcal/mol@LB@Unfolding Energy - mRNA 1.50868 kcal/mol@LB@Unfolding Energy - sRNA 5.23944 kcal/mol@LB@@LB@Position - mRNA 262 -- 272@LB@Position - sRNA 37 -- 47@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 37 -- 43@LB@ |
114 |
0.009652 |
0.2693 |
b2614 |
grpE |
-8.47 |
0.044767 |
262 -- 275 |
27 -- 41 |
heat shock protein |
|
_____________261_____________276\n_____________|_______________|\n5'-GAG...GGAUC_____G_________GAGGC...CUG-3'\n______________AGCAC__AAGAGAUU\n______________|||||__||:|:|||\n______________UCGUG__UUUUUUAA\n3'-UUU...GUUCU_____AA________GCAAU...CAA-5'\n_____________|_______________|\n_____________42______________26\n |
269 -- 275 |
27 -- 33 |
-11.1078 kcal/mol |
0.992631 kcal/mol |
1.6427 kcal/mol |
261 276@LB@ | |@LB@5'-GAG...GGAUC G GAGGC...CUG-3'@LB@ AGCAC AAGAGAUU@LB@ ||||| ||:|:|||@LB@ UCGUG UUUUUUAA@LB@3'-UUU...GUUCU AA GCAAU...CAA-5'@LB@ | |@LB@ 42 26@LB@@LB@@LB@Energy -8.47 kcal/mol@LB@Hybridization Energy -11.1078 kcal/mol@LB@Unfolding Energy - mRNA 0.992631 kcal/mol@LB@Unfolding Energy - sRNA 1.6427 kcal/mol@LB@@LB@Position - mRNA 262 -- 275@LB@Position - sRNA 27 -- 41@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 27 -- 33@LB@ |
177 |
0.02045 |
0.3721 |
b3148 |
yraN |
-6.85 |
0.120614 |
263 -- 276 |
37 -- 54 |
UPF0102 family protein |
|
_____________262________________277\n_____________|__________________|\n5'-GGU...GGCGA__________________AAGCG...GCA-3'\n______________UGC____GUGGGAAGCAC\n______________|||____|:::|||||||\n______________ACG____CGUUCUUCGUG\n3'-UUU...UUUGA___AAUU___________AAUUU...CAA-5'\n_____________|__________________|\n_____________55_________________36\n |
270 -- 276 |
37 -- 43 |
-17.1481 kcal/mol |
4.14332 kcal/mol |
6.1584 kcal/mol |
262 277@LB@ | |@LB@5'-GGU...GGCGA AAGCG...GCA-3'@LB@ UGC GUGGGAAGCAC@LB@ ||| |:::|||||||@LB@ ACG CGUUCUUCGUG@LB@3'-UUU...UUUGA AAUU AAUUU...CAA-5'@LB@ | |@LB@ 55 36@LB@@LB@@LB@Energy -6.85 kcal/mol@LB@Hybridization Energy -17.1481 kcal/mol@LB@Unfolding Energy - mRNA 4.14332 kcal/mol@LB@Unfolding Energy - sRNA 6.1584 kcal/mol@LB@@LB@Position - mRNA 263 -- 276@LB@Position - sRNA 37 -- 54@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 37 -- 43@LB@ |
37 |
0.00139 |
0.121 |
b2222 |
atoA |
-4.53 |
0.397320 |
265 -- 276 |
25 -- 38 |
acetyl-CoA:acetoacetyl-CoA transferase beta subunit |
|
_____________264____________277\n_____________|______________|\n5'-CGC...CGUUA______________GUUUA...AUU-3'\n______________ACUUAGGGA__UCG\n______________|||||:::|__|||\n______________UGAAUUUUU__AGC\n3'-UUU...CUUCG_________UA___AAUGU...CAA-5'\n_____________|______________|\n_____________39_____________24\n |
266 -- 272 |
31 -- 37 |
-7.73128 kcal/mol |
1.76584 kcal/mol |
1.4343 kcal/mol |
264 277@LB@ | |@LB@5'-CGC...CGUUA GUUUA...AUU-3'@LB@ ACUUAGGGA UCG@LB@ |||||:::| |||@LB@ UGAAUUUUU AGC@LB@3'-UUU...CUUCG UA AAUGU...CAA-5'@LB@ | |@LB@ 39 24@LB@@LB@@LB@Energy -4.53 kcal/mol@LB@Hybridization Energy -7.73128 kcal/mol@LB@Unfolding Energy - mRNA 1.76584 kcal/mol@LB@Unfolding Energy - sRNA 1.4343 kcal/mol@LB@@LB@Position - mRNA 265 -- 276@LB@Position - sRNA 25 -- 38@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 31 -- 37@LB@ |
138 |
0.01322 |
0.3087 |
b1523 |
yneG |
-4.22 |
0.452951 |
267 -- 281 |
24 -- 41 |
DUF4186 family protein |
|
_____________266________________282\n_____________|__________________|\n5'-AUG...GUCUG_____________G____CAGUA...AAG-3'\n______________GGCA__UGAAAGA__CGU\n______________:|||__|:|||:|__|||\n______________UCGU__AUUUUUU__GCA\n3'-UUU...GUUCU____GA_______AA___AUGUG...CAA-5'\n_____________|__________________|\n_____________42_________________23\n |
271 -- 277 |
29 -- 35 |
-8.58312 kcal/mol |
2.71204 kcal/mol |
1.64881 kcal/mol |
266 282@LB@ | |@LB@5'-AUG...GUCUG G CAGUA...AAG-3'@LB@ GGCA UGAAAGA CGU@LB@ :||| |:|||:| |||@LB@ UCGU AUUUUUU GCA@LB@3'-UUU...GUUCU GA AA AUGUG...CAA-5'@LB@ | |@LB@ 42 23@LB@@LB@@LB@Energy -4.22 kcal/mol@LB@Hybridization Energy -8.58312 kcal/mol@LB@Unfolding Energy - mRNA 2.71204 kcal/mol@LB@Unfolding Energy - sRNA 1.64881 kcal/mol@LB@@LB@Position - mRNA 267 -- 281@LB@Position - sRNA 24 -- 41@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 29 -- 35@LB@ |
22 |
0.0006536 |
0.09021 |
b1245 |
oppC |
-8.46 |
0.045181 |
270 -- 288 |
37 -- 58 |
oligopeptide ABC transporter permease |
|
_____________269____________________289\n_____________|______________________|\n5'-GGU...GGCGC_________________C____GUCGA...UUA-3'\n______________AGCUUGU___GGCAGGA_GCAC\n______________|:||||:___:|||:||_||||\n______________UUGAACG___UCGUUCU_CGUG\n3'-UUU...CUACU_______AAU_______U____AAUUU...CAA-5'\n_____________|______________________|\n_____________59_____________________36\n |
277 -- 283 |
42 -- 48 |
-22.602 kcal/mol |
7.90039 kcal/mol |
6.24354 kcal/mol |
269 289@LB@ | |@LB@5'-GGU...GGCGC C GUCGA...UUA-3'@LB@ AGCUUGU GGCAGGA GCAC@LB@ |:||||: :|||:|| ||||@LB@ UUGAACG UCGUUCU CGUG@LB@3'-UUU...CUACU AAU U AAUUU...CAA-5'@LB@ | |@LB@ 59 36@LB@@LB@@LB@Energy -8.46 kcal/mol@LB@Hybridization Energy -22.602 kcal/mol@LB@Unfolding Energy - mRNA 7.90039 kcal/mol@LB@Unfolding Energy - sRNA 6.24354 kcal/mol@LB@@LB@Position - mRNA 270 -- 288@LB@Position - sRNA 37 -- 58@LB@Position Seed - mRNA 277 -- 283@LB@Position Seed - sRNA 42 -- 48@LB@ |
75 |
0.004391 |
0.1886 |
b3708 |
tnaA |
-6.02 |
0.191179 |
273 -- 300 |
28 -- 53 |
tryptophanase/L-cysteine desulfhydrase PLP-dependent |
|
_____________272_________________________300\n_____________|___________________________|\n5'-ACC...CUCGC_____UC__G________A___UU____-3'\n______________GCUUA__GU_AAGAGGCA_UUA__AAAU\n______________|||||__|:_||||:|||_|||__||||\n______________CGAAU__CG_UUCUUCGU_AAU__UUUA\n3'-UUU...UUGAA_____U____________G___UU____AGCAA...CAA-5'\n_____________|____________________________|\n_____________54___________________________27\n |
284 -- 290 |
38 -- 44 |
-17.9242 kcal/mol |
5.66853 kcal/mol |
6.23468 kcal/mol |
272 300@LB@ | |@LB@5'-ACC...CUCGC UC G A UU -3'@LB@ GCUUA GU AAGAGGCA UUA AAAU@LB@ ||||| |: ||||:||| ||| ||||@LB@ CGAAU CG UUCUUCGU AAU UUUA@LB@3'-UUU...UUGAA U G UU AGCAA...CAA-5'@LB@ | |@LB@ 54 27@LB@@LB@@LB@Energy -6.02 kcal/mol@LB@Hybridization Energy -17.9242 kcal/mol@LB@Unfolding Energy - mRNA 5.66853 kcal/mol@LB@Unfolding Energy - sRNA 6.23468 kcal/mol@LB@@LB@Position - mRNA 273 -- 300@LB@Position - sRNA 28 -- 53@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 38 -- 44@LB@ |
134 |
0.01281 |
0.308 |
b3316 |
rpsS |
-8.71 |
0.038435 |
274 -- 288 |
39 -- 53 |
30S ribosomal subunit protein S19 |
|
_____________273______________289\n_____________|________________|\n5'-GCG...GGAAA__G____A________CCCUG...CUU-3'\n______________GC__GAG_CAAGAAGC\n______________||__:||_||||||||\n______________CG__UUC_GUUCUUCG\n3'-UUU...UUGAA__AA____________UGAAU...CAA-5'\n_____________|________________|\n_____________54_______________38\n |
282 -- 288 |
39 -- 45 |
-16.1876 kcal/mol |
1.46049 kcal/mol |
6.01745 kcal/mol |
273 289@LB@ | |@LB@5'-GCG...GGAAA G A CCCUG...CUU-3'@LB@ GC GAG CAAGAAGC@LB@ || :|| ||||||||@LB@ CG UUC GUUCUUCG@LB@3'-UUU...UUGAA AA UGAAU...CAA-5'@LB@ | |@LB@ 54 38@LB@@LB@@LB@Energy -8.71 kcal/mol@LB@Hybridization Energy -16.1876 kcal/mol@LB@Unfolding Energy - mRNA 1.46049 kcal/mol@LB@Unfolding Energy - sRNA 6.01745 kcal/mol@LB@@LB@Position - mRNA 274 -- 288@LB@Position - sRNA 39 -- 53@LB@Position Seed - mRNA 282 -- 288@LB@Position Seed - sRNA 39 -- 45@LB@ |
20 |
0.0005034 |
0.08107 |
b3962 |
sthA |
-8.00 |
0.060263 |
274 -- 291 |
37 -- 54 |
pyridine nucleotide transhydrogenase soluble |
|
_____________273________________292\n_____________|__________________|\n5'-UAC...GGGCC__G__________U____GCGUC...CAG-3'\n______________UG_UUAAGCAAGG_GCGC\n______________||_|||||||||:_||:|\n______________AC_AAUUCGUUCU_CGUG\n3'-UUU...UUUGA__G__________U____AAUUU...CAA-5'\n_____________|__________________|\n_____________55_________________36\n |
280 -- 286 |
42 -- 48 |
-21.3093 kcal/mol |
7.14965 kcal/mol |
6.1584 kcal/mol |
273 292@LB@ | |@LB@5'-UAC...GGGCC G U GCGUC...CAG-3'@LB@ UG UUAAGCAAGG GCGC@LB@ || |||||||||: ||:|@LB@ AC AAUUCGUUCU CGUG@LB@3'-UUU...UUUGA G U AAUUU...CAA-5'@LB@ | |@LB@ 55 36@LB@@LB@@LB@Energy -8.00 kcal/mol@LB@Hybridization Energy -21.3093 kcal/mol@LB@Unfolding Energy - mRNA 7.14965 kcal/mol@LB@Unfolding Energy - sRNA 6.1584 kcal/mol@LB@@LB@Position - mRNA 274 -- 291@LB@Position - sRNA 37 -- 54@LB@Position Seed - mRNA 280 -- 286@LB@Position Seed - sRNA 42 -- 48@LB@ |
161 |
0.01751 |
0.3504 |
b3394 |
hofN |
-4.92 |
0.333288 |
275 -- 286 |
18 -- 29 |
DNA catabolic putative fimbrial assembly protein |
|
_____________274__________287\n_____________|____________|\n5'-UGG...CUGAU____________UCUGC...CCG-3'\n______________GUUCGUUGCGCC\n______________:||||||:|:||\n______________UAAGCAAUGUGG\n3'-UUU...UUUUU____________UCCUU...CAA-5'\n_____________|____________|\n_____________30___________17\n |
275 -- 281 |
23 -- 29 |
-17.9024 kcal/mol |
4.53191 kcal/mol |
8.4513 kcal/mol |
274 287@LB@ | |@LB@5'-UGG...CUGAU UCUGC...CCG-3'@LB@ GUUCGUUGCGCC@LB@ :||||||:|:||@LB@ UAAGCAAUGUGG@LB@3'-UUU...UUUUU UCCUU...CAA-5'@LB@ | |@LB@ 30 17@LB@@LB@@LB@Energy -4.92 kcal/mol@LB@Hybridization Energy -17.9024 kcal/mol@LB@Unfolding Energy - mRNA 4.53191 kcal/mol@LB@Unfolding Energy - sRNA 8.4513 kcal/mol@LB@@LB@Position - mRNA 275 -- 286@LB@Position - sRNA 18 -- 29@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 23 -- 29@LB@ |
135 |
0.01294 |
0.3087 |
b3785 |
wzzE |
-4.46 |
0.409883 |
275 -- 291 |
39 -- 56 |
Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein |
|
_____________274_________________292\n_____________|___________________|\n5'-GCU...CGUAC___________U_______UAUGG...UUA-3'\n______________CUUGU__GGGC_GGGAAGC\n______________||||:__::||_::|||||\n______________GAACG__UUCG_UUCUUCG\n3'-UUU...ACUUU_____AA____________UGAAU...CAA-5'\n_____________|___________________|\n_____________57__________________38\n |
285 -- 291 |
39 -- 45 |
-16.5835 kcal/mol |
6.01236 kcal/mol |
6.11167 kcal/mol |
274 292@LB@ | |@LB@5'-GCU...CGUAC U UAUGG...UUA-3'@LB@ CUUGU GGGC GGGAAGC@LB@ ||||: ::|| ::|||||@LB@ GAACG UUCG UUCUUCG@LB@3'-UUU...ACUUU AA UGAAU...CAA-5'@LB@ | |@LB@ 57 38@LB@@LB@@LB@Energy -4.46 kcal/mol@LB@Hybridization Energy -16.5835 kcal/mol@LB@Unfolding Energy - mRNA 6.01236 kcal/mol@LB@Unfolding Energy - sRNA 6.11167 kcal/mol@LB@@LB@Position - mRNA 275 -- 291@LB@Position - sRNA 39 -- 56@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 39 -- 45@LB@ |
34 |
0.001265 |
0.1198 |
b0826 |
moeB |
-10.82 |
0.009172 |
276 -- 295 |
26 -- 46 |
molybdopterin synthase sulfurylase |
|
_____________275___________________296\n_____________|_____________________|\n5'-CUU...ACGGC_____________________UCGCG-3'\n______________CAGGAGGCGC_UGAAAGAUUC\n______________||:||:||:|_|:|||:||||\n______________GUUCUUCGUG_AUUUUUUAAG\n3'-UUU...AAUUC__________A__________CAAUG...CAA-5'\n_____________|_____________________|\n_____________47____________________25\n |
289 -- 295 |
26 -- 32 |
-23.0973 kcal/mol |
6.15128 kcal/mol |
6.13041 kcal/mol |
275 296@LB@ | |@LB@5'-CUU...ACGGC UCGCG-3'@LB@ CAGGAGGCGC UGAAAGAUUC@LB@ ||:||:||:| |:|||:||||@LB@ GUUCUUCGUG AUUUUUUAAG@LB@3'-UUU...AAUUC A CAAUG...CAA-5'@LB@ | |@LB@ 47 25@LB@@LB@@LB@Energy -10.82 kcal/mol@LB@Hybridization Energy -23.0973 kcal/mol@LB@Unfolding Energy - mRNA 6.15128 kcal/mol@LB@Unfolding Energy - sRNA 6.13041 kcal/mol@LB@@LB@Position - mRNA 276 -- 295@LB@Position - sRNA 26 -- 46@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 26 -- 32@LB@ |
80 |
0.005376 |
0.2146 |
b1520 |
yneE |
-6.66 |
0.134465 |
278 -- 284 |
34 -- 40 |
bestrophin family putative inner membrane protein |
|
_____________277_____285\n_____________|_______|\n5'-CGU...UCCUC_______CUACU...UCU-3'\n______________GCGCUUA\n______________||:||||\n______________CGUGAAU\n3'-UUU...UUCUU_______UUUUU...CAA-5'\n_____________|_______|\n_____________41______33\n |
278 -- 284 |
34 -- 40 |
-8.65652 kcal/mol |
0.386276 kcal/mol |
1.61352 kcal/mol |
277 285@LB@ | |@LB@5'-CGU...UCCUC CUACU...UCU-3'@LB@ GCGCUUA@LB@ ||:||||@LB@ CGUGAAU@LB@3'-UUU...UUCUU UUUUU...CAA-5'@LB@ | |@LB@ 41 33@LB@@LB@@LB@Energy -6.66 kcal/mol@LB@Hybridization Energy -8.65652 kcal/mol@LB@Unfolding Energy - mRNA 0.386276 kcal/mol@LB@Unfolding Energy - sRNA 1.61352 kcal/mol@LB@@LB@Position - mRNA 278 -- 284@LB@Position - sRNA 34 -- 40@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 34 -- 40@LB@ |
12 |
0.0001753 |
0.04706 |
b3676 |
yidH |
-12.46 |
0.002725 |
279 -- 300 |
7 -- 26 |
DUF202 family inner membrane protein |
|
_____________278___________________300\n_____________|_____________________|\n5'-GCC...GGAUC___AC__________UU_____-3'\n______________CGU__UGCACUAGGA__UCUGG\n______________|||__|:|||:||||__||||:\n______________GCA__AUGUGGUCCU__AGACU\n3'-UUU...UUUAA_______________UU_____ACACAA-5'\n_____________|______________________|\n_____________27_____________________6\n |
286 -- 292 |
15 -- 21 |
-23.8048 kcal/mol |
2.98352 kcal/mol |
8.36616 kcal/mol |
278 300@LB@ | |@LB@5'-GCC...GGAUC AC UU -3'@LB@ CGU UGCACUAGGA UCUGG@LB@ ||| |:|||:|||| ||||:@LB@ GCA AUGUGGUCCU AGACU@LB@3'-UUU...UUUAA UU ACACAA-5'@LB@ | |@LB@ 27 6@LB@@LB@@LB@Energy -12.46 kcal/mol@LB@Hybridization Energy -23.8048 kcal/mol@LB@Unfolding Energy - mRNA 2.98352 kcal/mol@LB@Unfolding Energy - sRNA 8.36616 kcal/mol@LB@@LB@Position - mRNA 279 -- 300@LB@Position - sRNA 7 -- 26@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 15 -- 21@LB@ |
56 |
0.002803 |
0.1597 |
b2514 |
hisS |
-5.93 |
0.201249 |
279 -- 295 |
24 -- 41 |
histidyl tRNA synthetase |
|
_____________278_________________296\n_____________|___________________|\n5'-AUG...UUGAA_____AC____________GCUCG-3'\n______________GGCAC__UGAAAAA__CGU\n______________:||||__|:|||||__|||\n______________UCGUG__AUUUUUU__GCA\n3'-UUU...GUUCU_____A________AA___AUGUG...CAA-5'\n_____________|___________________|\n_____________42__________________23\n |
286 -- 292 |
29 -- 35 |
-10.1195 kcal/mol |
2.54562 kcal/mol |
1.64881 kcal/mol |
278 296@LB@ | |@LB@5'-AUG...UUGAA AC GCUCG-3'@LB@ GGCAC UGAAAAA CGU@LB@ :|||| |:||||| |||@LB@ UCGUG AUUUUUU GCA@LB@3'-UUU...GUUCU A AA AUGUG...CAA-5'@LB@ | |@LB@ 42 23@LB@@LB@@LB@Energy -5.93 kcal/mol@LB@Hybridization Energy -10.1195 kcal/mol@LB@Unfolding Energy - mRNA 2.54562 kcal/mol@LB@Unfolding Energy - sRNA 1.64881 kcal/mol@LB@@LB@Position - mRNA 279 -- 295@LB@Position - sRNA 24 -- 41@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 29 -- 35@LB@ |
15 |
0.0003116 |
0.06692 |
b2149 |
mglA |
-7.01 |
0.109495 |
281 -- 289 |
33 -- 41 |
methyl-galactoside ABC transporter ATPase |
|
_____________280_______290\n_____________|_________|\n5'-CGA...GUUAA_________UAACG...AUU-3'\n______________GGCACUUGA\n______________:||||||:|\n______________UCGUGAAUU\n3'-UUU...GUUCU_________UUUUA...CAA-5'\n_____________|_________|\n_____________42________32\n |
283 -- 289 |
33 -- 39 |
-11.227 kcal/mol |
2.59529 kcal/mol |
1.6188 kcal/mol |
280 290@LB@ | |@LB@5'-CGA...GUUAA UAACG...AUU-3'@LB@ GGCACUUGA@LB@ :||||||:|@LB@ UCGUGAAUU@LB@3'-UUU...GUUCU UUUUA...CAA-5'@LB@ | |@LB@ 42 32@LB@@LB@@LB@Energy -7.01 kcal/mol@LB@Hybridization Energy -11.227 kcal/mol@LB@Unfolding Energy - mRNA 2.59529 kcal/mol@LB@Unfolding Energy - sRNA 1.6188 kcal/mol@LB@@LB@Position - mRNA 281 -- 289@LB@Position - sRNA 33 -- 41@LB@Position Seed - mRNA 283 -- 289@LB@Position Seed - sRNA 33 -- 39@LB@ |
179 |
0.02107 |
0.3768 |
b3226 |
nanR |
-7.22 |
0.096643 |
281 -- 296 |
26 -- 41 |
sialic acid-inducible nan operon repressor |
|
_____________280______________297\n_____________|________________|\n5'-AUU...CCGCU_____G_______C__UCCG-3'\n______________GGCGC_UAAAAAA_UC\n______________:||:|_|||||||_||\n______________UCGUG_AUUUUUU_AG\n3'-UUU...GUUCU_____A_______A__CAAUG...CAA-5'\n_____________|________________|\n_____________42_______________25\n |
287 -- 293 |
29 -- 35 |
-11.6683 kcal/mol |
2.7952 kcal/mol |
1.64829 kcal/mol |
280 297@LB@ | |@LB@5'-AUU...CCGCU G C UCCG-3'@LB@ GGCGC UAAAAAA UC@LB@ :||:| ||||||| ||@LB@ UCGUG AUUUUUU AG@LB@3'-UUU...GUUCU A A CAAUG...CAA-5'@LB@ | |@LB@ 42 25@LB@@LB@@LB@Energy -7.22 kcal/mol@LB@Hybridization Energy -11.6683 kcal/mol@LB@Unfolding Energy - mRNA 2.7952 kcal/mol@LB@Unfolding Energy - sRNA 1.64829 kcal/mol@LB@@LB@Position - mRNA 281 -- 296@LB@Position - sRNA 26 -- 41@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 29 -- 35@LB@ |
66 |
0.003432 |
0.1645 |
b0882 |
clpA |
-7.45 |
0.084488 |
282 -- 290 |
34 -- 42 |
ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease chaperone activity |
|
_____________281_______291\n_____________|_________|\n5'-UUU...CCGUC_________UUACU...CGC-3'\n______________GAGCACUUG\n______________:|||||||:\n______________UUCGUGAAU\n3'-UUU...CGUUC_________UUUUU...CAA-5'\n_____________|_________|\n_____________43________33\n |
284 -- 290 |
34 -- 40 |
-10.5586 kcal/mol |
1.49281 kcal/mol |
1.61613 kcal/mol |
281 291@LB@ | |@LB@5'-UUU...CCGUC UUACU...CGC-3'@LB@ GAGCACUUG@LB@ :|||||||:@LB@ UUCGUGAAU@LB@3'-UUU...CGUUC UUUUU...CAA-5'@LB@ | |@LB@ 43 33@LB@@LB@@LB@Energy -7.45 kcal/mol@LB@Hybridization Energy -10.5586 kcal/mol@LB@Unfolding Energy - mRNA 1.49281 kcal/mol@LB@Unfolding Energy - sRNA 1.61613 kcal/mol@LB@@LB@Position - mRNA 282 -- 290@LB@Position - sRNA 34 -- 42@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 34 -- 40@LB@ |
96 |
0.007122 |
0.239 |
b2060 |
wzc |
-5.51 |
0.249431 |
285 -- 291 |
37 -- 43 |
colanic acid production tyrosine-protein kinase; autokinase; Ugd phosphorylase |
|
_____________284_____292\n_____________|_______|\n5'-GAA...UCAUU_______GCUGG...GGG-3'\n______________GAAGCGC\n______________|||||:|\n______________CUUCGUG\n3'-UUU...UCGUU_______AAUUU...CAA-5'\n_____________|_______|\n_____________44______36\n |
285 -- 291 |
37 -- 43 |
-9.9751 kcal/mol |
0.803081 kcal/mol |
3.6595 kcal/mol |
284 292@LB@ | |@LB@5'-GAA...UCAUU GCUGG...GGG-3'@LB@ GAAGCGC@LB@ |||||:|@LB@ CUUCGUG@LB@3'-UUU...UCGUU AAUUU...CAA-5'@LB@ | |@LB@ 44 36@LB@@LB@@LB@Energy -5.51 kcal/mol@LB@Hybridization Energy -9.9751 kcal/mol@LB@Unfolding Energy - mRNA 0.803081 kcal/mol@LB@Unfolding Energy - sRNA 3.6595 kcal/mol@LB@@LB@Position - mRNA 285 -- 291@LB@Position - sRNA 37 -- 43@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 37 -- 43@LB@ |
183 |
0.02165 |
0.3768 |
b4201 |
priB |
-4.41 |
0.419305 |
289 -- 298 |
45 -- 54 |
primosomal protein N |
|
_____________288________299\n_____________|__________|\n5'-AGG...GUUCG__________UC-3'\n______________UGCUUGAGCA\n______________|||||:||||\n______________ACGAAUUCGU\n3'-UUU...UUUGA__________UCUUC...CAA-5'\n_____________|__________|\n_____________55_________44\n |
290 -- 296 |
47 -- 53 |
-14.7774 kcal/mol |
4.46723 kcal/mol |
5.90361 kcal/mol |
288 299@LB@ | |@LB@5'-AGG...GUUCG UC-3'@LB@ UGCUUGAGCA@LB@ |||||:||||@LB@ ACGAAUUCGU@LB@3'-UUU...UUUGA UCUUC...CAA-5'@LB@ | |@LB@ 55 44@LB@@LB@@LB@Energy -4.41 kcal/mol@LB@Hybridization Energy -14.7774 kcal/mol@LB@Unfolding Energy - mRNA 4.46723 kcal/mol@LB@Unfolding Energy - sRNA 5.90361 kcal/mol@LB@@LB@Position - mRNA 289 -- 298@LB@Position - sRNA 45 -- 54@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 47 -- 53@LB@ |