2 |
4.208e-07 |
0.0007412 |
b2531 |
iscR |
-21.46 |
0.000012 |
188 -- 264 |
2 -- 56 |
isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor |
|
_____________187___________________________________________________________________________265\n_____________|_____________________________________________________________________________|\n5'-AUG...UUUGA__U___________UG_GACUGACAUCUAAA______U_____GUGACCG__A______________C__A__U___AAGCG...AAC-3'\n______________GG_GAAGUAAGACA__A______________GGGCGC_AUGCC_______CA_UGCUUGACGUUGCG_UC_AC_CUG\n______________:|_|||||||||||__|______________|:||||_|:|||_______||_:||||||||||||:_||_||_|||\n______________UC_CUUCAUUCUGU__U______________CUCGCG_UGCGG_______GU_GCGAACUGCAACGU_AG_UG_GAC\n3'-UUU...UUUUU______________UA_AC__________________U______________A______________A_________G-5'\n_____________|_____________________________________________________________________________|\n_____________57____________________________________________________________________________1\n |
244 -- 250 |
14 -- 20 |
-58.8762 kcal/mol |
20.5805 kcal/mol |
16.8438 kcal/mol |
187 265@LB@ | |@LB@5'-AUG...UUUGA U UG GACUGACAUCUAAA U GUGACCG A C A U AAGCG...AAC-3'@LB@ GG GAAGUAAGACA A GGGCGC AUGCC CA UGCUUGACGUUGCG UC AC CUG@LB@ :| ||||||||||| | |:|||| |:||| || :||||||||||||: || || |||@LB@ UC CUUCAUUCUGU U CUCGCG UGCGG GU GCGAACUGCAACGU AG UG GAC@LB@3'-UUU...UUUUU UA AC U A A G-5'@LB@ | |@LB@ 57 1@LB@@LB@@LB@Energy -21.46 kcal/mol@LB@Hybridization Energy -58.8762 kcal/mol@LB@Unfolding Energy - mRNA 20.5805 kcal/mol@LB@Unfolding Energy - sRNA 16.8438 kcal/mol@LB@@LB@Position - mRNA 188 -- 264@LB@Position - sRNA 2 -- 56@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 14 -- 20@LB@ |
185 |
0.008022 |
0.1528 |
b1813 |
nudL |
-20.51 |
0.000035 |
188 -- 228 |
15 -- 56 |
putative CoA pyrophosphohydrolase weak 3-phosphohydroxypyruvate phosphatase |
|
_____________187____________________________________________229\n_____________|______________________________________________|\n5'-CCU...CAACU__A__________________AUAC_________G___________AUUUU...CUG-3'\n______________GG_GAAGUAAGAC___GUGGA____CGUAGC_CU_A_CGCUUGAUG\n______________:|_||||||||||___:||||____||:|:|_|:_|_|||||||:|\n______________UC_CUUCAUUCUG___UACCU____GCGUUG_GG_U_GCGAACUGC\n3'-UUU...UUUUU_____________UUA_____C_________C__G_A_________AACGU...ACG-5'\n_____________|______________________________________________|\n_____________57_____________________________________________14\n |
221 -- 227 |
16 -- 22 |
-41.758 kcal/mol |
7.45502 kcal/mol |
13.7937 kcal/mol |
187 229@LB@ | |@LB@5'-CCU...CAACU A AUAC G AUUUU...CUG-3'@LB@ GG GAAGUAAGAC GUGGA CGUAGC CU A CGCUUGAUG@LB@ :| |||||||||| :|||| ||:|:| |: | |||||||:|@LB@ UC CUUCAUUCUG UACCU GCGUUG GG U GCGAACUGC@LB@3'-UUU...UUUUU UUA C C G A AACGU...ACG-5'@LB@ | |@LB@ 57 14@LB@@LB@@LB@Energy -20.51 kcal/mol@LB@Hybridization Energy -41.758 kcal/mol@LB@Unfolding Energy - mRNA 7.45502 kcal/mol@LB@Unfolding Energy - sRNA 13.7937 kcal/mol@LB@@LB@Position - mRNA 188 -- 228@LB@Position - sRNA 15 -- 56@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 16 -- 22@LB@ |
13 |
2.167e-05 |
0.005627 |
b0123 |
cueO |
-18.83 |
0.000188 |
100 -- 180 |
1 -- 93 |
multicopper oxidase (laccase) |
|
_____________99__________________________________________________________________________________________________181\n_____________|___________________________________________________________________________________________________|\n5'-CUG...CAUUA________UUA________C______CU___CC___CCGU_______________U___________________A________U______________UUAAG...CGU-3'\n______________UUGU_CGA___AAUUGUGU__UGCGG__UGA__UUC____AAGGGGAAG___GAC_____________AUGCUCA_CGUUUGAU_UUGU_UUCGCCUGC\n______________|:||_|||___|||||||:__|||:|__|:|__|||____||::|||||___|||_____________|:||:||_||:||||:_|||:_|||:|||||\n______________AGCA_GCU___UUAACACG__ACGUC__AUU__AAG____UUUUCCUUC___CUG_____________UGCGGGU_GCGAACUG_AACG_AAGUGGACG\n3'-UUU...GCCGC____U___UAG________AU_______________UU___________AUU___UUAUACCUCGCGU_______A________C____U_________-5'\n_____________|__________________________________________________________________________________________________|\n_____________94_________________________________________________________________________________________________1\n |
174 -- 180 |
1 -- 7 |
-64.9216 kcal/mol |
25.1682 kcal/mol |
20.925 kcal/mol |
99 181@LB@ | |@LB@5'-CUG...CAUUA UUA C CU CC CCGU U A U UUAAG...CGU-3'@LB@ UUGU CGA AAUUGUGU UGCGG UGA UUC AAGGGGAAG GAC AUGCUCA CGUUUGAU UUGU UUCGCCUGC@LB@ |:|| ||| |||||||: |||:| |:| ||| ||::||||| ||| |:||:|| ||:||||: |||: |||:|||||@LB@ AGCA GCU UUAACACG ACGUC AUU AAG UUUUCCUUC CUG UGCGGGU GCGAACUG AACG AAGUGGACG@LB@3'-UUU...GCCGC U UAG AU UU AUU UUAUACCUCGCGU A C U -5'@LB@ | |@LB@ 94 1@LB@@LB@@LB@Energy -18.83 kcal/mol@LB@Hybridization Energy -64.9216 kcal/mol@LB@Unfolding Energy - mRNA 25.1682 kcal/mol@LB@Unfolding Energy - sRNA 20.925 kcal/mol@LB@@LB@Position - mRNA 100 -- 180@LB@Position - sRNA 1 -- 93@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 1 -- 7@LB@ |
20 |
4.953e-05 |
0.008725 |
b1841 |
yobA |
-18.58 |
0.000237 |
158 -- 228 |
20 -- 76 |
CopC family protein |
|
_____________157_______________________________________________________________________229\n_____________|_________________________________________________________________________|\n5'-GCC...ACAAG_______UCUGUAAAAA___U___AC_________U_____________CUUCAAC____C__U___U_____ACGCG...AGU-3'\n______________GUUAUGC__________AGU_AUU__AAAAAGGAA___AGAUAAUAUGG_______UGCA_GC_CCC_UCGCU\n______________|:|||||__________|||_|||__|||||||||___|||:|||||||_______:|||_:|_|||_|||||\n______________CGAUACG__________UCA_UAA__UUUUUCCUU___UCUGUUAUACC_______GCGU_UG_GGG_AGCGA\n3'-UUU...UAACA____________________U___GU_________CAU___________UC____________C___U_____ACUGC...ACG-5'\n_____________|_________________________________________________________________________|\n_____________77________________________________________________________________________19\n |
198 -- 204 |
38 -- 44 |
-46.9503 kcal/mol |
10.9442 kcal/mol |
17.4278 kcal/mol |
157 229@LB@ | |@LB@5'-GCC...ACAAG UCUGUAAAAA U AC U CUUCAAC C U U ACGCG...AGU-3'@LB@ GUUAUGC AGU AUU AAAAAGGAA AGAUAAUAUGG UGCA GC CCC UCGCU@LB@ |:||||| ||| ||| ||||||||| |||:||||||| :||| :| ||| |||||@LB@ CGAUACG UCA UAA UUUUUCCUU UCUGUUAUACC GCGU UG GGG AGCGA@LB@3'-UUU...UAACA U GU CAU UC C U ACUGC...ACG-5'@LB@ | |@LB@ 77 19@LB@@LB@@LB@Energy -18.58 kcal/mol@LB@Hybridization Energy -46.9503 kcal/mol@LB@Unfolding Energy - mRNA 10.9442 kcal/mol@LB@Unfolding Energy - sRNA 17.4278 kcal/mol@LB@@LB@Position - mRNA 158 -- 228@LB@Position - sRNA 20 -- 76@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 38 -- 44@LB@ |
4 |
1.28e-06 |
0.001128 |
b0884 |
infA |
-17.67 |
0.000535 |
178 -- 264 |
1 -- 71 |
translation initiation factor IF-1 |
|
_____________177_______________________________________________________________________________________265\n_____________|_________________________________________________________________________________________|\n5'-UUU...UUACG________ACCCC______UUAGAUGGCCAA_____________U__AA_____G__A___________AA______CUAA____A___UCCGC...CUG-3'\n______________GUAGUGAU_____AGAGGA____________AG_AAGACAAUAU_GA__UGCAA_GU_CCGUU_CUUGA__CGUUGC____UACC_UGU\n______________|:|||:||_____|:||||____________||_||||||||||_||__:||||_|:_||:|:_|||||__||||||____:|||_||:\n______________CGUCAUUA_____UUUCCU____________UC_UUCUGUUAUA_CU__GCGUU_CG_GGUAG_GAACU__GCAACG____GUGG_ACG\n3'-UUU...CGAUA________AGUUU____________________A__________C__C______G________C_____________UAA_________-5'\n_____________|________________________________________________________________________________________|\n_____________72_______________________________________________________________________________________1\n |
214 -- 220 |
40 -- 46 |
-55.7119 kcal/mol |
17.4656 kcal/mol |
20.5786 kcal/mol |
177 265@LB@ | |@LB@5'-UUU...UUACG ACCCC UUAGAUGGCCAA U AA G A AA CUAA A UCCGC...CUG-3'@LB@ GUAGUGAU AGAGGA AG AAGACAAUAU GA UGCAA GU CCGUU CUUGA CGUUGC UACC UGU@LB@ |:|||:|| |:|||| || |||||||||| || :|||| |: ||:|: ||||| |||||| :||| ||:@LB@ CGUCAUUA UUUCCU UC UUCUGUUAUA CU GCGUU CG GGUAG GAACU GCAACG GUGG ACG@LB@3'-UUU...CGAUA AGUUU A C C G C UAA -5'@LB@ | |@LB@ 72 1@LB@@LB@@LB@Energy -17.67 kcal/mol@LB@Hybridization Energy -55.7119 kcal/mol@LB@Unfolding Energy - mRNA 17.4656 kcal/mol@LB@Unfolding Energy - sRNA 20.5786 kcal/mol@LB@@LB@Position - mRNA 178 -- 264@LB@Position - sRNA 1 -- 71@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 40 -- 46@LB@ |
90 |
0.002477 |
0.09689 |
b4020 |
yjbB |
-17.01 |
0.000941 |
168 -- 222 |
1 -- 56 |
putative Na+/Pi-cotransporter |
|
_____________167________________________________________________________223\n_____________|__________________________________________________________|\n5'-UCC...GCUUC_____CA__UA______A____AACC___AA______GUUA___C_____________UUUCU...UGC-3'\n______________AGGAA__UA__ACGAUA_GGAG_____UG__C_UCGU____ACG_UGC_UUCACCUGC\n______________|||||__||__||:|||_||||_____:|__|_|||:____|||_|||_|||||||||\n______________UCCUU__AU__UGUUAU_CCUC_____GC__G_AGCG____UGC_ACG_AAGUGGACG\n3'-UUU...UUUUU_____C___UC______A____GCGUU__GG_U____AAC____A___U_________-5'\n_____________|_________________________________________________________|\n_____________57________________________________________________________1\n |
216 -- 222 |
1 -- 7 |
-44.3986 kcal/mol |
10.5518 kcal/mol |
16.8439 kcal/mol |
167 223@LB@ | |@LB@5'-UCC...GCUUC CA UA A AACC AA GUUA C UUUCU...UGC-3'@LB@ AGGAA UA ACGAUA GGAG UG C UCGU ACG UGC UUCACCUGC@LB@ ||||| || ||:||| |||| :| | |||: ||| ||| |||||||||@LB@ UCCUU AU UGUUAU CCUC GC G AGCG UGC ACG AAGUGGACG@LB@3'-UUU...UUUUU C UC A GCGUU GG U AAC A U -5'@LB@ | |@LB@ 57 1@LB@@LB@@LB@Energy -17.01 kcal/mol@LB@Hybridization Energy -44.3986 kcal/mol@LB@Unfolding Energy - mRNA 10.5518 kcal/mol@LB@Unfolding Energy - sRNA 16.8439 kcal/mol@LB@@LB@Position - mRNA 168 -- 222@LB@Position - sRNA 1 -- 56@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 1 -- 7@LB@ |
40 |
0.000329 |
0.02897 |
b2513 |
yfgM |
-16.53 |
0.001389 |
180 -- 205 |
37 -- 63 |
ancillary SecYEG translocon subunit; putative anti-RcsB factor |
|
_____________179_________________________206\n_____________|___________________________|\n5'-GGC...CUGGG_____________A_______C_____AAUUU...UUG-3'\n______________UUAAGGAAGG_AG_AGGACAG_GUGGA\n______________|:||::||||_||_|:||||:_:||||\n______________AGUUUUUUCC_UC_UUCUGUU_UACCU\n3'-UUU...CAUUA__________U__A_______A_____CGCGU...ACG-5'\n_____________|___________________________|\n_____________64__________________________36\n |
193 -- 199 |
43 -- 49 |
-25.2652 kcal/mol |
3.41523 kcal/mol |
5.31676 kcal/mol |
179 206@LB@ | |@LB@5'-GGC...CUGGG A C AAUUU...UUG-3'@LB@ UUAAGGAAGG AG AGGACAG GUGGA@LB@ |:||::|||| || |:||||: :||||@LB@ AGUUUUUUCC UC UUCUGUU UACCU@LB@3'-UUU...CAUUA U A A CGCGU...ACG-5'@LB@ | |@LB@ 64 36@LB@@LB@@LB@Energy -16.53 kcal/mol@LB@Hybridization Energy -25.2652 kcal/mol@LB@Unfolding Energy - mRNA 3.41523 kcal/mol@LB@Unfolding Energy - sRNA 5.31676 kcal/mol@LB@@LB@Position - mRNA 180 -- 205@LB@Position - sRNA 37 -- 63@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 43 -- 49@LB@ |
6 |
5.595e-06 |
0.003285 |
b2048 |
cpsG |
-15.91 |
0.002276 |
49 -- 82 |
20 -- 54 |
phosphomannomutase |
|
_____________48__________________________________83\n_____________|___________________________________|\n5'-GGG...AUCUC_________________U____UU___GG______ACGGA...GCG-3'\n______________GAAG_AGGAUGAUGUGG_GCGU__CGC__AUCGCU\n______________||||_|:||::||:|||_|||:__|||__||||||\n______________CUUC_UUCUGUUAUACC_CGCG__GCG__UAGCGA\n3'-UUU...UUUUC____A____________U____UU___GG______ACUGC...ACG-5'\n_____________|___________________________________|\n_____________55__________________________________19\n |
54 -- 60 |
42 -- 48 |
-40.4755 kcal/mol |
10.8622 kcal/mol |
13.7092 kcal/mol |
48 83@LB@ | |@LB@5'-GGG...AUCUC U UU GG ACGGA...GCG-3'@LB@ GAAG AGGAUGAUGUGG GCGU CGC AUCGCU@LB@ |||| |:||::||:||| |||: ||| ||||||@LB@ CUUC UUCUGUUAUACC CGCG GCG UAGCGA@LB@3'-UUU...UUUUC A U UU GG ACUGC...ACG-5'@LB@ | |@LB@ 55 19@LB@@LB@@LB@Energy -15.91 kcal/mol@LB@Hybridization Energy -40.4755 kcal/mol@LB@Unfolding Energy - mRNA 10.8622 kcal/mol@LB@Unfolding Energy - sRNA 13.7092 kcal/mol@LB@@LB@Position - mRNA 49 -- 82@LB@Position - sRNA 20 -- 54@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 42 -- 48@LB@ |
19 |
4.82e-05 |
0.008725 |
b2452 |
eutH |
-15.86 |
0.002353 |
187 -- 206 |
37 -- 56 |
ethanolamine transporter |
|
_____________186___________________207\n_____________|_____________________|\n5'-UUG...CUAAC_______A_____________AUUAA...UCC-3'\n______________AGGGAGU_AAGGCGAUG_GGA\n______________|||:|||_|||:|:||:_|||\n______________UCCUUCA_UUCUGUUAU_CCU\n3'-UUU...UUUUU_________________A___CGCGU...ACG-5'\n_____________|_____________________|\n_____________57____________________36\n |
197 -- 203 |
41 -- 47 |
-22.1606 kcal/mol |
2.59538 kcal/mol |
3.6645 kcal/mol |
186 207@LB@ | |@LB@5'-UUG...CUAAC A AUUAA...UCC-3'@LB@ AGGGAGU AAGGCGAUG GGA@LB@ |||:||| |||:|:||: |||@LB@ UCCUUCA UUCUGUUAU CCU@LB@3'-UUU...UUUUU A CGCGU...ACG-5'@LB@ | |@LB@ 57 36@LB@@LB@@LB@Energy -15.86 kcal/mol@LB@Hybridization Energy -22.1606 kcal/mol@LB@Unfolding Energy - mRNA 2.59538 kcal/mol@LB@Unfolding Energy - sRNA 3.6645 kcal/mol@LB@@LB@Position - mRNA 187 -- 206@LB@Position - sRNA 37 -- 56@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 41 -- 47@LB@ |
5 |
2.521e-06 |
0.001776 |
b3365 |
nirB |
-15.77 |
0.002536 |
156 -- 206 |
35 -- 88 |
nitrite reductase large subunit NAD(P)H-binding |
|
_____________155____________________________________________________207\n_____________|______________________________________________________|\n5'-AUC...GUUGC_______UUAA__G__G_________________A__UC_______AAAU____AAAGU...UUA-3'\n______________UGAAUCG_____G_UA_GCGGUAAU__AGAAAAG_AA__GAGGCAA____GAGC\n______________:|||||:_____|_||_||:|||||__|:|||||_||__:||:|||____||||\n______________GCUUAGU_____C_AU_CGUCAUUA__UUUUUUC_UU__UUCUGUU____CUCG\n3'-UUU...AGCAU_______UAACA_G__A________AG_______C__CA_______AUAC____CGUUG...ACG-5'\n_____________|______________________________________________________|\n_____________89_____________________________________________________34\n |
192 -- 198 |
43 -- 49 |
-31.7984 kcal/mol |
7.74851 kcal/mol |
8.27555 kcal/mol |
155 207@LB@ | |@LB@5'-AUC...GUUGC UUAA G G A UC AAAU AAAGU...UUA-3'@LB@ UGAAUCG G UA GCGGUAAU AGAAAAG AA GAGGCAA GAGC@LB@ :|||||: | || ||:||||| |:||||| || :||:||| ||||@LB@ GCUUAGU C AU CGUCAUUA UUUUUUC UU UUCUGUU CUCG@LB@3'-UUU...AGCAU UAACA G A AG C CA AUAC CGUUG...ACG-5'@LB@ | |@LB@ 89 34@LB@@LB@@LB@Energy -15.77 kcal/mol@LB@Hybridization Energy -31.7984 kcal/mol@LB@Unfolding Energy - mRNA 7.74851 kcal/mol@LB@Unfolding Energy - sRNA 8.27555 kcal/mol@LB@@LB@Position - mRNA 156 -- 206@LB@Position - sRNA 35 -- 88@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 43 -- 49@LB@ |
15 |
2.607e-05 |
0.006123 |
b2552 |
hmp |
-15.14 |
0.004063 |
170 -- 224 |
20 -- 85 |
fused nitric oxide dioxygenase/dihydropteridine reductase 2 |
|
_____________169___________________________________________________________________225\n_____________|_____________________________________________________________________|\n5'-AUU...GAUAC_______AAG_______________________________C_____CUU______UCAAA________ACAGU...UUA-3'\n______________AUCAAUU_____AUGCA_______AAAAAAGGA____AGAC_AUAUG___GA_CGC_____CCAUCGCU\n______________|||||||_____|||||_______|||||||||____||||_|||||___||_|||_____||||||||\n______________UAGUUAA_____UACGU_______UUUUUUCCU____UCUG_UAUAC___CU_GCG_____GGUAGCGA\n3'-UUU...AUGCU_______CACGA_____CAUUAAG_________UCAU____U__________C___UUGCG________ACUGC...ACG-5'\n_____________|_____________________________________________________________________|\n_____________86____________________________________________________________________19\n |
218 -- 224 |
20 -- 26 |
-42.0201 kcal/mol |
9.32625 kcal/mol |
17.5545 kcal/mol |
169 225@LB@ | |@LB@5'-AUU...GAUAC AAG C CUU UCAAA ACAGU...UUA-3'@LB@ AUCAAUU AUGCA AAAAAAGGA AGAC AUAUG GA CGC CCAUCGCU@LB@ ||||||| ||||| ||||||||| |||| ||||| || ||| ||||||||@LB@ UAGUUAA UACGU UUUUUUCCU UCUG UAUAC CU GCG GGUAGCGA@LB@3'-UUU...AUGCU CACGA CAUUAAG UCAU U C UUGCG ACUGC...ACG-5'@LB@ | |@LB@ 86 19@LB@@LB@@LB@Energy -15.14 kcal/mol@LB@Hybridization Energy -42.0201 kcal/mol@LB@Unfolding Energy - mRNA 9.32625 kcal/mol@LB@Unfolding Energy - sRNA 17.5545 kcal/mol@LB@@LB@Position - mRNA 170 -- 224@LB@Position - sRNA 20 -- 85@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 20 -- 26@LB@ |
54 |
0.0007167 |
0.04676 |
b0147 |
ligT |
-15.11 |
0.004153 |
163 -- 244 |
1 -- 81 |
2'-5' RNA ligase |
|
_____________162_________________________________________________________________________________________245\n_____________|___________________________________________________________________________________________|\n5'-CCA...GCCAC_____A__AUC___________UAACC_______CCU__C____CU__AC_____________CUUU___AUC__________________AGAAA...CGG-3'\n______________AUUGU_GC___GCGGUAAUUCA_______GAGUG___CA_AUGU__GA__CGCAACGUCUGUU____GCU___GAC_______UUACCUGC\n______________|||||_||___||:||||||||_______:|||:___||_||:|__||__|||||||:|::|:____|||___|||_______|:||||||\n______________UAACA_CG___CGUCAUUAAGU_______UUCAU___GU_UAUA__CU__GCGUUGCGGGUAG____CGA___CUG_______AGUGGACG\n3'-UUU...UUAGU________AUA___________UUUUUCC_____UCU_______C___C_____________________A_____CAACGUA________-5'\n_____________|__________________________________________________________________________________________|\n_____________82_________________________________________________________________________________________1\n |
238 -- 244 |
1 -- 7 |
-55.1488 kcal/mol |
19.3452 kcal/mol |
20.694 kcal/mol |
162 245@LB@ | |@LB@5'-CCA...GCCAC A AUC UAACC CCU C CU AC CUUU AUC AGAAA...CGG-3'@LB@ AUUGU GC GCGGUAAUUCA GAGUG CA AUGU GA CGCAACGUCUGUU GCU GAC UUACCUGC@LB@ ||||| || ||:|||||||| :|||: || ||:| || |||||||:|::|: ||| ||| |:||||||@LB@ UAACA CG CGUCAUUAAGU UUCAU GU UAUA CU GCGUUGCGGGUAG CGA CUG AGUGGACG@LB@3'-UUU...UUAGU AUA UUUUUCC UCU C C A CAACGUA -5'@LB@ | |@LB@ 82 1@LB@@LB@@LB@Energy -15.11 kcal/mol@LB@Hybridization Energy -55.1488 kcal/mol@LB@Unfolding Energy - mRNA 19.3452 kcal/mol@LB@Unfolding Energy - sRNA 20.694 kcal/mol@LB@@LB@Position - mRNA 163 -- 244@LB@Position - sRNA 1 -- 81@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 1 -- 7@LB@ |
118 |
0.004043 |
0.119 |
b1636 |
pdxY |
-15.07 |
0.004282 |
119 -- 169 |
46 -- 90 |
pyridoxamine kinase |
|
_____________118___________________________________________________170\n_____________|_____________________________________________________|\n5'-UAU...AGAAU___U____U_________GGAAAUA_____U___G_G________________AAUCA...UCU-3'\n______________UAC__GUC_GAUU_UGCU_______AUGCA_UAA_U_GAAAGGGGGAGUGAGA\n______________|||__:||_:|||_||||_______|||||_|||_|_:|||::||:|||:|||\n______________AUG__UAG_UUAA_ACGA_______UACGU_AUU_A_UUUUUUCCUUCAUUCU\n3'-UUU...GCAGC___CU________C________________C___A_G________________GUUAU...ACG-5'\n_____________|_____________________________________________________|\n_____________91____________________________________________________45\n |
163 -- 169 |
46 -- 52 |
-32.4349 kcal/mol |
11.9314 kcal/mol |
5.43414 kcal/mol |
118 170@LB@ | |@LB@5'-UAU...AGAAU U U GGAAAUA U G G AAUCA...UCU-3'@LB@ UAC GUC GAUU UGCU AUGCA UAA U GAAAGGGGGAGUGAGA@LB@ ||| :|| :||| |||| ||||| ||| | :|||::||:|||:|||@LB@ AUG UAG UUAA ACGA UACGU AUU A UUUUUUCCUUCAUUCU@LB@3'-UUU...GCAGC CU C C A G GUUAU...ACG-5'@LB@ | |@LB@ 91 45@LB@@LB@@LB@Energy -15.07 kcal/mol@LB@Hybridization Energy -32.4349 kcal/mol@LB@Unfolding Energy - mRNA 11.9314 kcal/mol@LB@Unfolding Energy - sRNA 5.43414 kcal/mol@LB@@LB@Position - mRNA 119 -- 169@LB@Position - sRNA 46 -- 90@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 46 -- 52@LB@ |
144 |
0.005571 |
0.1363 |
b1843 |
yobB |
-15.05 |
0.004361 |
174 -- 196 |
50 -- 72 |
C-N hydrolase family protein |
|
_____________173_____________________197\n_____________|_______________________|\n5'-CCU...UAAUU______C____U___________CAUUA...CCA-3'\n______________UGCAGU_AUUU_GAAAAGGAAGU\n______________||||||_|||:_:||||||||||\n______________ACGUCA_UAAG_UUUUUCCUUCA\n3'-UUU...ACGAU______U____U___________UUCUG...ACG-5'\n_____________|_______________________|\n_____________73______________________49\n |
190 -- 196 |
50 -- 56 |
-24.355 kcal/mol |
5.29079 kcal/mol |
4.01539 kcal/mol |
173 197@LB@ | |@LB@5'-CCU...UAAUU C U CAUUA...CCA-3'@LB@ UGCAGU AUUU GAAAAGGAAGU@LB@ |||||| |||: :||||||||||@LB@ ACGUCA UAAG UUUUUCCUUCA@LB@3'-UUU...ACGAU U U UUCUG...ACG-5'@LB@ | |@LB@ 73 49@LB@@LB@@LB@Energy -15.05 kcal/mol@LB@Hybridization Energy -24.355 kcal/mol@LB@Unfolding Energy - mRNA 5.29079 kcal/mol@LB@Unfolding Energy - sRNA 4.01539 kcal/mol@LB@@LB@Position - mRNA 174 -- 196@LB@Position - sRNA 50 -- 72@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 50 -- 56@LB@ |
93 |
0.002751 |
0.1042 |
b3407 |
yhgF |
-15.01 |
0.004479 |
248 -- 282 |
1 -- 31 |
putative transcriptional accessory protein |
|
_____________247_________________________________283\n_____________|___________________________________|\n5'-CCC...CAGGC_______GAACA_G______C__C___________UUGAC...CCG-3'\n______________GCGCCCG_____G_UUGACG_UG_CGUUCGCCUGC\n______________:|||||:_____|_||||||_||_|:|||:|||||\n______________UGCGGGU_____C_AACUGC_AC_GUAAGUGGACG\n3'-UUU...CGCGU_______AG____G______A______________-5'\n_____________|__________________________________|\n_____________32_________________________________1\n |
276 -- 282 |
1 -- 7 |
-43.3047 kcal/mol |
13.2535 kcal/mol |
15.0438 kcal/mol |
247 283@LB@ | |@LB@5'-CCC...CAGGC GAACA G C C UUGAC...CCG-3'@LB@ GCGCCCG G UUGACG UG CGUUCGCCUGC@LB@ :|||||: | |||||| || |:|||:|||||@LB@ UGCGGGU C AACUGC AC GUAAGUGGACG@LB@3'-UUU...CGCGU AG G A -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -15.01 kcal/mol@LB@Hybridization Energy -43.3047 kcal/mol@LB@Unfolding Energy - mRNA 13.2535 kcal/mol@LB@Unfolding Energy - sRNA 15.0438 kcal/mol@LB@@LB@Position - mRNA 248 -- 282@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 1 -- 7@LB@ |
75 |
0.001837 |
0.08273 |
b1816 |
yoaE |
-14.98 |
0.004573 |
118 -- 155 |
1 -- 35 |
putative membrane protein/conserved protein |
|
_____________117____________________________________156\n_____________|______________________________________|\n5'-GAU...CUCUA___C__A___U_______C__U___U____A_______AUUAU...UUC-3'\n______________UGC_GC_CCU_UCGUUUG_AU_UUG_CGUU_CGCCUGC\n______________:||_:|_||:_|||:|||_|:_|||_|:||_|:|||||\n______________GCG_UG_GGG_AGCGAAC_UG_AAC_GUAA_GUGGACG\n3'-UUU...ACCUC___U__C___U__________C________________-5'\n_____________|_____________________________________|\n_____________36____________________________________1\n |
149 -- 155 |
1 -- 7 |
-36.6264 kcal/mol |
6.36146 kcal/mol |
15.286 kcal/mol |
117 156@LB@ | |@LB@5'-GAU...CUCUA C A U C U U A AUUAU...UUC-3'@LB@ UGC GC CCU UCGUUUG AU UUG CGUU CGCCUGC@LB@ :|| :| ||: |||:||| |: ||| |:|| |:|||||@LB@ GCG UG GGG AGCGAAC UG AAC GUAA GUGGACG@LB@3'-UUU...ACCUC U C U C -5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -14.98 kcal/mol@LB@Hybridization Energy -36.6264 kcal/mol@LB@Unfolding Energy - mRNA 6.36146 kcal/mol@LB@Unfolding Energy - sRNA 15.286 kcal/mol@LB@@LB@Position - mRNA 118 -- 155@LB@Position - sRNA 1 -- 35@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 1 -- 7@LB@ |
41 |
0.0003478 |
0.02948 |
b1478 |
adhP |
-14.79 |
0.005262 |
167 -- 196 |
51 -- 77 |
ethanol-active dehydrogenase/acetaldehyde-active reductase |
|
_____________166____________________________197\n_____________|______________________________|\n5'-GCA...UCACC__________AACA___UCC__________AACUA...GUU-3'\n______________UGCUAUGCAG____UCA___GAAAAGGAGG\n______________||||||||||____|||___:|||||||:|\n______________ACGAUACGUC____AGU___UUUUUCCUUC\n3'-UUU...UUAAC__________AUUA________________AUUCU...ACG-5'\n_____________|______________________________|\n_____________78_____________________________50\n |
190 -- 196 |
51 -- 57 |
-28.1635 kcal/mol |
8.82843 kcal/mol |
4.54711 kcal/mol |
166 197@LB@ | |@LB@5'-GCA...UCACC AACA UCC AACUA...GUU-3'@LB@ UGCUAUGCAG UCA GAAAAGGAGG@LB@ |||||||||| ||| :|||||||:|@LB@ ACGAUACGUC AGU UUUUUCCUUC@LB@3'-UUU...UUAAC AUUA AUUCU...ACG-5'@LB@ | |@LB@ 78 50@LB@@LB@@LB@Energy -14.79 kcal/mol@LB@Hybridization Energy -28.1635 kcal/mol@LB@Unfolding Energy - mRNA 8.82843 kcal/mol@LB@Unfolding Energy - sRNA 4.54711 kcal/mol@LB@@LB@Position - mRNA 167 -- 196@LB@Position - sRNA 51 -- 77@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 51 -- 57@LB@ |
18 |
4.045e-05 |
0.007917 |
b0723 |
sdhA |
-14.73 |
0.005501 |
172 -- 195 |
67 -- 90 |
succinate dehydrogenase flavoprotein subunit |
|
_____________171______________________196\n_____________|________________________|\n5'-GGU...UGAUU________C______G____G___GUGUG...GUG-3'\n______________UAUGGAUU_GUUGUG_UGUG_GGU\n______________||:|:||:_:|||||_|:||_:||\n______________AUGCUUAG_UAACAC_AUAC_UCA\n3'-UUU...GCAGC________U______G____G___UUAAG...ACG-5'\n_____________|________________________|\n_____________91_______________________66\n |
173 -- 179 |
83 -- 89 |
-23.9499 kcal/mol |
4.69238 kcal/mol |
4.5307 kcal/mol |
171 196@LB@ | |@LB@5'-GGU...UGAUU C G G GUGUG...GUG-3'@LB@ UAUGGAUU GUUGUG UGUG GGU@LB@ ||:|:||: :||||| |:|| :||@LB@ AUGCUUAG UAACAC AUAC UCA@LB@3'-UUU...GCAGC U G G UUAAG...ACG-5'@LB@ | |@LB@ 91 66@LB@@LB@@LB@Energy -14.73 kcal/mol@LB@Hybridization Energy -23.9499 kcal/mol@LB@Unfolding Energy - mRNA 4.69238 kcal/mol@LB@Unfolding Energy - sRNA 4.5307 kcal/mol@LB@@LB@Position - mRNA 172 -- 195@LB@Position - sRNA 67 -- 90@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 83 -- 89@LB@ |
78 |
0.001866 |
0.08273 |
b2952 |
yggT |
-14.70 |
0.005634 |
84 -- 104 |
37 -- 56 |
putative inner membrane protein; compensates for loss in K+ uptake |
|
_____________83____________________105\n_____________|_____________________|\n5'-AGG...UCUCU_____U__C____________AGCCG...ACA-3'\n______________GGGAA_GU_GGACGAUAUGGA\n______________:||||_||_:|||:|||||||\n______________UCCUU_CA_UCUGUUAUACCU\n3'-UUU...UUUUU________U____________CGCGU...ACG-5'\n_____________|_____________________|\n_____________57____________________36\n |
98 -- 104 |
37 -- 43 |
-24.1681 kcal/mol |
5.76987 kcal/mol |
3.6645 kcal/mol |
83 105@LB@ | |@LB@5'-AGG...UCUCU U C AGCCG...ACA-3'@LB@ GGGAA GU GGACGAUAUGGA@LB@ :|||| || :|||:|||||||@LB@ UCCUU CA UCUGUUAUACCU@LB@3'-UUU...UUUUU U CGCGU...ACG-5'@LB@ | |@LB@ 57 36@LB@@LB@@LB@Energy -14.70 kcal/mol@LB@Hybridization Energy -24.1681 kcal/mol@LB@Unfolding Energy - mRNA 5.76987 kcal/mol@LB@Unfolding Energy - sRNA 3.6645 kcal/mol@LB@@LB@Position - mRNA 84 -- 104@LB@Position - sRNA 37 -- 56@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 37 -- 43@LB@ |
177 |
0.007289 |
0.1451 |
b4002 |
zraP |
-14.65 |
0.005839 |
172 -- 192 |
36 -- 54 |
Zn-dependent periplasmic chaperone |
|
_____________171___________________193\n_____________|_____________________|\n5'-AAU...UACCC____________CCAC_____GAUUA...GGC-3'\n______________GAAGUAAGACAA____UGGAG\n______________||||||||||||____|||||\n______________CUUCAUUCUGUU____ACCUC\n3'-UUU...UUUUC____________AU_______GCGUU...ACG-5'\n_____________|_____________________|\n_____________55____________________35\n |
177 -- 183 |
43 -- 49 |
-21.9873 kcal/mol |
3.76916 kcal/mol |
3.53499 kcal/mol |
171 193@LB@ | |@LB@5'-AAU...UACCC CCAC GAUUA...GGC-3'@LB@ GAAGUAAGACAA UGGAG@LB@ |||||||||||| |||||@LB@ CUUCAUUCUGUU ACCUC@LB@3'-UUU...UUUUC AU GCGUU...ACG-5'@LB@ | |@LB@ 55 35@LB@@LB@@LB@Energy -14.65 kcal/mol@LB@Hybridization Energy -21.9873 kcal/mol@LB@Unfolding Energy - mRNA 3.76916 kcal/mol@LB@Unfolding Energy - sRNA 3.53499 kcal/mol@LB@@LB@Position - mRNA 172 -- 192@LB@Position - sRNA 36 -- 54@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 43 -- 49@LB@ |
134 |
0.004994 |
0.1313 |
b1518 |
lsrG |
-14.53 |
0.006358 |
14 -- 66 |
30 -- 79 |
autoinducer-2 (AI-2) degrading protein LsrG |
|
_____________13_______________________________________________________67\n_____________|________________________________________________________|\n5'-GAG...GGAAA____________GCUA____UC____CGCUUCU____UG_________________AUUUU...AAG-3'\n______________UGUGCUG_GCAG____UCGA__AGGG_______GGUG____GAUAUGGGGCGUAAU\n______________||||||:_||||____||:|__|:||_______:||:____:||||||:|||:||:\n______________ACACGAU_CGUC____AGUU__UUCC_______UCAU____UUAUACCUCGCGUUG\n3'-UUU...AGUUA_______A____AUUA____UU____U__________UCUG_______________CGGGU...ACG-5'\n_____________|________________________________________________________|\n_____________80_______________________________________________________29\n |
58 -- 64 |
32 -- 38 |
-43.6874 kcal/mol |
15.7058 kcal/mol |
13.4555 kcal/mol |
13 67@LB@ | |@LB@5'-GAG...GGAAA GCUA UC CGCUUCU UG AUUUU...AAG-3'@LB@ UGUGCUG GCAG UCGA AGGG GGUG GAUAUGGGGCGUAAU@LB@ ||||||: |||| ||:| |:|| :||: :||||||:|||:||:@LB@ ACACGAU CGUC AGUU UUCC UCAU UUAUACCUCGCGUUG@LB@3'-UUU...AGUUA A AUUA UU U UCUG CGGGU...ACG-5'@LB@ | |@LB@ 80 29@LB@@LB@@LB@Energy -14.53 kcal/mol@LB@Hybridization Energy -43.6874 kcal/mol@LB@Unfolding Energy - mRNA 15.7058 kcal/mol@LB@Unfolding Energy - sRNA 13.4555 kcal/mol@LB@@LB@Position - mRNA 14 -- 66@LB@Position - sRNA 30 -- 79@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 32 -- 38@LB@ |
63 |
0.00104 |
0.05816 |
b1856 |
mepM |
-14.49 |
0.006560 |
139 -- 249 |
1 -- 88 |
murein DD-endopeptidase space-maker hydrolase septation protein |
|
_____________138________________________________________________________________________________________________________________250\n_____________|__________________________________________________________________________________________________________________|\n5'-CAA...AUUCC__________A___CAACCAG______AGCUGCCU_________AU___U__G__A___AUUAC_______AGAUA____GCUCU_____CC_______UAAUA__________GACCA...UCG-3'\n______________UGAGUCAAUU__GC_______UAUGCG_________GAAAGGAG__UAA_GA_GA_GUG_____GUGCAAC_____GCCC_____GUCGC__UGGCGUU_____AUUUACC_GC\n______________:||:||||||__||_______|||||:_________:||||||:__|||_||_:|_:||_____|:|||||_____||||_____:||||__||:||||_____|||:|||_||\n______________GCUUAGUUAA__CG_______AUACGU_________UUUUCCUU__AUU_CU_UU_UAC_____CGCGUUG_____CGGG_____UAGCG__ACUGCAA_____UAAGUGG_CG\n3'-UUU...AGCAU__________CA_______________CAUUAAGUU________C_______G__A___CU_____________________________A________CG__________A__-5'\n_____________|_________________________________________________________________________________________________________________|\n_____________89________________________________________________________________________________________________________________1\n |
241 -- 247 |
4 -- 10 |
-60.5282 kcal/mol |
25.2709 kcal/mol |
20.7761 kcal/mol |
138 250@LB@ | |@LB@5'-CAA...AUUCC A CAACCAG AGCUGCCU AU U G A AUUAC AGAUA GCUCU CC UAAUA GACCA...UCG-3'@LB@ UGAGUCAAUU GC UAUGCG GAAAGGAG UAA GA GA GUG GUGCAAC GCCC GUCGC UGGCGUU AUUUACC GC@LB@ :||:|||||| || |||||: :||||||: ||| || :| :|| |:||||| |||| :|||| ||:|||| |||:||| ||@LB@ GCUUAGUUAA CG AUACGU UUUUCCUU AUU CU UU UAC CGCGUUG CGGG UAGCG ACUGCAA UAAGUGG CG@LB@3'-UUU...AGCAU CA CAUUAAGUU C G A CU A CG A -5'@LB@ | |@LB@ 89 1@LB@@LB@@LB@Energy -14.49 kcal/mol@LB@Hybridization Energy -60.5282 kcal/mol@LB@Unfolding Energy - mRNA 25.2709 kcal/mol@LB@Unfolding Energy - sRNA 20.7761 kcal/mol@LB@@LB@Position - mRNA 139 -- 249@LB@Position - sRNA 1 -- 88@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 4 -- 10@LB@ |
12 |
2.043e-05 |
0.005627 |
b3935 |
priA |
-14.36 |
0.007166 |
198 -- 229 |
1 -- 34 |
Primosome factor n' (replication factor Y) |
|
_____________197________________________________230\n_____________|__________________________________|\n5'-GAA...AUGAU__U___________CC________C______C__UCCGC...GCG-3'\n______________GC_AUGCCCGUUGC___ACGUUGC__UUGCC_GU\n______________||_|:||||:|:||___|||||||__|::||_|:\n______________CG_UGCGGGUAGCG___UGCAACG__AGUGG_CG\n3'-UUU...CCUCG__U___________AAC_______UA_____A__-5'\n_____________|_________________________________|\n_____________35________________________________1\n |
214 -- 220 |
11 -- 17 |
-36.548 kcal/mol |
6.92453 kcal/mol |
15.2664 kcal/mol |
197 230@LB@ | |@LB@5'-GAA...AUGAU U CC C C UCCGC...GCG-3'@LB@ GC AUGCCCGUUGC ACGUUGC UUGCC GU@LB@ || |:||||:|:|| ||||||| |::|| |:@LB@ CG UGCGGGUAGCG UGCAACG AGUGG CG@LB@3'-UUU...CCUCG U AAC UA A -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -14.36 kcal/mol@LB@Hybridization Energy -36.548 kcal/mol@LB@Unfolding Energy - mRNA 6.92453 kcal/mol@LB@Unfolding Energy - sRNA 15.2664 kcal/mol@LB@@LB@Position - mRNA 198 -- 229@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 11 -- 17@LB@ |
47 |
0.0004845 |
0.03632 |
b0102 |
zapD |
-14.30 |
0.007459 |
100 -- 148 |
1 -- 47 |
FtsZ stabilizer |
|
_____________99____________________________________________________149\n_____________|_____________________________________________________|\n5'-ACC...UCAUU_______AC_______CCGG___________AUCG________C_________ACGCA...CCA-3'\n______________GAUAAUA___GGCGCA____AUG_CUAUCGC____GAUGUUGC___CGCCUGC\n______________||:||||___:|||||____|:|_|:|||||____||:|||||___|:|||||\n______________CUGUUAU___UCGCGU____UGC_GGUAGCG____CUGCAACG___GUGGACG\n3'-UUU...UCAUU_______ACC_____________G_______AA__________UAA_______-5'\n_____________|____________________________________________________|\n_____________48___________________________________________________1\n |
142 -- 148 |
1 -- 7 |
-50.0565 kcal/mol |
18.9794 kcal/mol |
16.7767 kcal/mol |
99 149@LB@ | |@LB@5'-ACC...UCAUU AC CCGG AUCG C ACGCA...CCA-3'@LB@ GAUAAUA GGCGCA AUG CUAUCGC GAUGUUGC CGCCUGC@LB@ ||:|||| :||||| |:| |:||||| ||:||||| |:|||||@LB@ CUGUUAU UCGCGU UGC GGUAGCG CUGCAACG GUGGACG@LB@3'-UUU...UCAUU ACC G AA UAA -5'@LB@ | |@LB@ 48 1@LB@@LB@@LB@Energy -14.30 kcal/mol@LB@Hybridization Energy -50.0565 kcal/mol@LB@Unfolding Energy - mRNA 18.9794 kcal/mol@LB@Unfolding Energy - sRNA 16.7767 kcal/mol@LB@@LB@Position - mRNA 100 -- 148@LB@Position - sRNA 1 -- 47@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 1 -- 7@LB@ |
11 |
1.858e-05 |
0.005627 |
b4015 |
aceA |
-14.28 |
0.007567 |
72 -- 114 |
4 -- 39 |
isocitrate lyase |
|
_____________71___________________________________________115\n_____________|____________________________________________|\n5'-UUG...UCCCA_______UUUGAC______G____________GAA__GA_____ACUUC...UGA-3'\n______________GGGGCGU______GAUGCC_CA_CGCUUGAUG___CA__UCACC\n______________||:|||:______:|:|||_||_|||||||:|___||__|||||\n______________CCUCGCG______UUGCGG_GU_GCGAACUGC___GU__AGUGG\n3'-UUU...UUAUA______________________A_________AAC__A______ACG-5'\n_____________|____________________________________________|\n_____________40___________________________________________3\n |
96 -- 102 |
15 -- 21 |
-43.7402 kcal/mol |
14.1704 kcal/mol |
15.29 kcal/mol |
71 115@LB@ | |@LB@5'-UUG...UCCCA UUUGAC G GAA GA ACUUC...UGA-3'@LB@ GGGGCGU GAUGCC CA CGCUUGAUG CA UCACC@LB@ ||:|||: :|:||| || |||||||:| || |||||@LB@ CCUCGCG UUGCGG GU GCGAACUGC GU AGUGG@LB@3'-UUU...UUAUA A AAC A ACG-5'@LB@ | |@LB@ 40 3@LB@@LB@@LB@Energy -14.28 kcal/mol@LB@Hybridization Energy -43.7402 kcal/mol@LB@Unfolding Energy - mRNA 14.1704 kcal/mol@LB@Unfolding Energy - sRNA 15.29 kcal/mol@LB@@LB@Position - mRNA 72 -- 114@LB@Position - sRNA 4 -- 39@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 15 -- 21@LB@ |
92 |
0.002723 |
0.1042 |
b1413 |
hrpA |
-14.20 |
0.008055 |
24 -- 69 |
1 -- 41 |
putative ATP-dependent helicase |
|
_____________23_______________________________________________70\n_____________|________________________________________________|\n5'-GGU...UUUGA________AU____________UGU____ACUU______CAAU_____CACAG...GCG-3'\n______________AUGG_GCG__GC_CCCGUUGCU___UGAC____UAUUCA____CCUGC\n______________||||_|||__:|_|||:|:|||___||||____:|||||____|||||\n______________UACC_CGC__UG_GGGUAGCGA___ACUG____GUAAGU____GGACG\n3'-UUU...UGUUA____U___GU__C________________CAAC_______________-5'\n_____________|_______________________________________________|\n_____________42______________________________________________1\n |
37 -- 43 |
20 -- 26 |
-41.3168 kcal/mol |
11.8333 kcal/mol |
15.2922 kcal/mol |
23 70@LB@ | |@LB@5'-GGU...UUUGA AU UGU ACUU CAAU CACAG...GCG-3'@LB@ AUGG GCG GC CCCGUUGCU UGAC UAUUCA CCUGC@LB@ |||| ||| :| |||:|:||| |||| :||||| |||||@LB@ UACC CGC UG GGGUAGCGA ACUG GUAAGU GGACG@LB@3'-UUU...UGUUA U GU C CAAC -5'@LB@ | |@LB@ 42 1@LB@@LB@@LB@Energy -14.20 kcal/mol@LB@Hybridization Energy -41.3168 kcal/mol@LB@Unfolding Energy - mRNA 11.8333 kcal/mol@LB@Unfolding Energy - sRNA 15.2922 kcal/mol@LB@@LB@Position - mRNA 24 -- 69@LB@Position - sRNA 1 -- 41@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 20 -- 26@LB@ |
55 |
0.0007336 |
0.04699 |
b0585 |
fes |
-14.13 |
0.008457 |
197 -- 228 |
46 -- 77 |
enterobactin/ferrienterobactin esterase |
|
_____________196________________________________229\n_____________|__________________________________|\n5'-CAU...GGUUA__G____A___CG_________U___________GCUGG...GGU-3'\n______________UG_UGUG_CGG____UUAAAAG_AGGAAGUGAGA\n______________||_|:||_|:|____|:||||:_|||||||:|||\n______________AC_AUAC_GUC____AGUUUUU_UCCUUCAUUCU\n3'-UUU...UUAAC__G________AUUA___________________GUUAU...ACG-5'\n_____________|__________________________________|\n_____________78_________________________________45\n |
222 -- 228 |
46 -- 52 |
-26.4508 kcal/mol |
7.03406 kcal/mol |
5.29333 kcal/mol |
196 229@LB@ | |@LB@5'-CAU...GGUUA G A CG U GCUGG...GGU-3'@LB@ UG UGUG CGG UUAAAAG AGGAAGUGAGA@LB@ || |:|| |:| |:||||: |||||||:|||@LB@ AC AUAC GUC AGUUUUU UCCUUCAUUCU@LB@3'-UUU...UUAAC G AUUA GUUAU...ACG-5'@LB@ | |@LB@ 78 45@LB@@LB@@LB@Energy -14.13 kcal/mol@LB@Hybridization Energy -26.4508 kcal/mol@LB@Unfolding Energy - mRNA 7.03406 kcal/mol@LB@Unfolding Energy - sRNA 5.29333 kcal/mol@LB@@LB@Position - mRNA 197 -- 228@LB@Position - sRNA 46 -- 77@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 46 -- 52@LB@ |
165 |
0.006479 |
0.1377 |
b3132 |
kbaZ |
-14.08 |
0.008730 |
160 -- 208 |
44 -- 89 |
tagatose 6-phosphate aldolase 1 kbaZ subunit |
b2095 |
_____________159__________________________________________________209\n_____________|____________________________________________________|\n5'-CGC...ACAAA_____A_____AA_____C________CUGAACU_________A____A___UCUGA...CAA-3'\n______________ACGAA__GAUU____UAU_GCAGUAAU_______GGAGAGGAA_GUGA_ACA\n______________|||||__:|||____|||_||||||||_______::|:|||||_||:|_|||\n______________UGCUU__UUAA____AUA_CGUCAUUA_______UUUUUCCUU_CAUU_UGU\n3'-UUU...CAGCA_____AG____CACG____________AGU__________________C___UAUAC...ACG-5'\n_____________|____________________________________________________|\n_____________90___________________________________________________43\n |
193 -- 199 |
52 -- 58 |
-26.7556 kcal/mol |
6.95106 kcal/mol |
5.72676 kcal/mol |
159 209@LB@ | |@LB@5'-CGC...ACAAA A AA C CUGAACU A A UCUGA...CAA-3'@LB@ ACGAA GAUU UAU GCAGUAAU GGAGAGGAA GUGA ACA@LB@ ||||| :||| ||| |||||||| ::|:||||| ||:| |||@LB@ UGCUU UUAA AUA CGUCAUUA UUUUUCCUU CAUU UGU@LB@3'-UUU...CAGCA AG CACG AGU C UAUAC...ACG-5'@LB@ | |@LB@ 90 43@LB@@LB@@LB@Energy -14.08 kcal/mol@LB@Hybridization Energy -26.7556 kcal/mol@LB@Unfolding Energy - mRNA 6.95106 kcal/mol@LB@Unfolding Energy - sRNA 5.72676 kcal/mol@LB@@LB@Position - mRNA 160 -- 208@LB@Position - sRNA 44 -- 89@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 52 -- 58@LB@ |
46 |
0.0004731 |
0.03623 |
b2279 |
nuoK |
-14.07 |
0.008802 |
136 -- 157 |
69 -- 92 |
NADH:ubiquinone oxidoreductase membrane subunit K |
|
_____________135______________________158\n_____________|________________________|\n5'-GGU...AAGAG_________G__________A___AUCGU...UUG-3'\n______________CGUGCGGGU_AA__GUGCUG_GCA\n______________|||:||::|_||__|||||:_|||\n______________GCAUGCUUA_UU__CACGAU_CGU\n3'-UUU...CCGCA_________G__AA______A___CAUUA...ACG-5'\n_____________|________________________|\n_____________93_______________________68\n |
138 -- 144 |
84 -- 90 |
-25.4547 kcal/mol |
6.72556 kcal/mol |
4.66371 kcal/mol |
135 158@LB@ | |@LB@5'-GGU...AAGAG G A AUCGU...UUG-3'@LB@ CGUGCGGGU AA GUGCUG GCA@LB@ |||:||::| || |||||: |||@LB@ GCAUGCUUA UU CACGAU CGU@LB@3'-UUU...CCGCA G AA A CAUUA...ACG-5'@LB@ | |@LB@ 93 68@LB@@LB@@LB@Energy -14.07 kcal/mol@LB@Hybridization Energy -25.4547 kcal/mol@LB@Unfolding Energy - mRNA 6.72556 kcal/mol@LB@Unfolding Energy - sRNA 4.66371 kcal/mol@LB@@LB@Position - mRNA 136 -- 157@LB@Position - sRNA 69 -- 92@LB@Position Seed - mRNA 138 -- 144@LB@Position Seed - sRNA 84 -- 90@LB@ |
59 |
0.0009764 |
0.05816 |
b0593 |
entC |
-14.06 |
0.008887 |
219 -- 262 |
19 -- 57 |
isochorismate synthase 1 |
|
_____________218____________________________________________263\n_____________|______________________________________________|\n5'-GGC...UGGCU_________CAGC____C______CAACACUU______A_______UUUCU...CAG-3'\n______________GAGGAAGUA____AGAC___AUGG________GCGCCC_AUCGCUU\n______________:||||||||____||||___||||________:|||||_|||||||\n______________UUCCUUCAU____UCUG___UACC________UGCGGG_UAGCGAA\n3'-UUU...GUUUU_________________UUA____UCGCGU________________CUGCA...ACG-5'\n_____________|______________________________________________|\n_____________58_____________________________________________18\n |
256 -- 262 |
19 -- 25 |
-38.3486 kcal/mol |
10.4998 kcal/mol |
13.7965 kcal/mol |
218 263@LB@ | |@LB@5'-GGC...UGGCU CAGC C CAACACUU A UUUCU...CAG-3'@LB@ GAGGAAGUA AGAC AUGG GCGCCC AUCGCUU@LB@ :|||||||| |||| |||| :||||| |||||||@LB@ UUCCUUCAU UCUG UACC UGCGGG UAGCGAA@LB@3'-UUU...GUUUU UUA UCGCGU CUGCA...ACG-5'@LB@ | |@LB@ 58 18@LB@@LB@@LB@Energy -14.06 kcal/mol@LB@Hybridization Energy -38.3486 kcal/mol@LB@Unfolding Energy - mRNA 10.4998 kcal/mol@LB@Unfolding Energy - sRNA 13.7965 kcal/mol@LB@@LB@Position - mRNA 219 -- 262@LB@Position - sRNA 19 -- 57@LB@Position Seed - mRNA 256 -- 262@LB@Position Seed - sRNA 19 -- 25@LB@ |
25 |
0.0001129 |
0.01591 |
b3304 |
rplR |
-13.93 |
0.009701 |
159 -- 205 |
37 -- 94 |
50S ribosomal subunit protein L18 |
|
_____________158___________________________________________________________206\n_____________|_____________________________________________________________|\n5'-AUC...ACGAA________UAC___AGAG______________________________GUA___C______UAAGA...GUC-3'\n______________GUCGUGCG___CAA____GCUA_____________AGAA_GAAGUAAG___ACA_UAUGGA\n______________|||||:||___|||____||||_____________|:||_||||||||___|||_||||||\n______________CAGCAUGC___GUU____CGAU_____________UUUU_CUUCAUUC___UGU_AUACCU\n3'-UUU...AGCCG________UUA___AACA____ACGUCAUUAAGUU____C______________U______CGCGU...ACG-5'\n_____________|_____________________________________________________________|\n_____________95____________________________________________________________36\n |
186 -- 192 |
47 -- 53 |
-32.9659 kcal/mol |
11.091 kcal/mol |
7.93697 kcal/mol |
158 206@LB@ | |@LB@5'-AUC...ACGAA UAC AGAG GUA C UAAGA...GUC-3'@LB@ GUCGUGCG CAA GCUA AGAA GAAGUAAG ACA UAUGGA@LB@ |||||:|| ||| |||| |:|| |||||||| ||| ||||||@LB@ CAGCAUGC GUU CGAU UUUU CUUCAUUC UGU AUACCU@LB@3'-UUU...AGCCG UUA AACA ACGUCAUUAAGUU C U CGCGU...ACG-5'@LB@ | |@LB@ 95 36@LB@@LB@@LB@Energy -13.93 kcal/mol@LB@Hybridization Energy -32.9659 kcal/mol@LB@Unfolding Energy - mRNA 11.091 kcal/mol@LB@Unfolding Energy - sRNA 7.93697 kcal/mol@LB@@LB@Position - mRNA 159 -- 205@LB@Position - sRNA 37 -- 94@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 47 -- 53@LB@ |
35 |
0.0002679 |
0.02697 |
b2152 |
yeiB |
-13.89 |
0.009991 |
187 -- 220 |
20 -- 59 |
DUF418 family putative inner membrane protein |
|
_____________186______________________________________221\n_____________|________________________________________|\n5'-GCU...UGAUU______C_______ACC________________A______CGAUU...AUC-3'\n______________AAAAGG____AGGA____AUGGAGCGCAACGUC___CGCU\n______________||||||____|:||____|||||||||||||:|___||||\n______________UUUUCC____UUCU____UACCUCGCGUUGCGG___GCGA\n3'-UUU...AAGUU______UUCA____GUUA_______________GUA____ACUGC...ACG-5'\n_____________|________________________________________|\n_____________60_______________________________________19\n |
209 -- 215 |
27 -- 33 |
-38.6917 kcal/mol |
10.9969 kcal/mol |
13.8113 kcal/mol |
186 221@LB@ | |@LB@5'-GCU...UGAUU C ACC A CGAUU...AUC-3'@LB@ AAAAGG AGGA AUGGAGCGCAACGUC CGCU@LB@ |||||| |:|| |||||||||||||:| ||||@LB@ UUUUCC UUCU UACCUCGCGUUGCGG GCGA@LB@3'-UUU...AAGUU UUCA GUUA GUA ACUGC...ACG-5'@LB@ | |@LB@ 60 19@LB@@LB@@LB@Energy -13.89 kcal/mol@LB@Hybridization Energy -38.6917 kcal/mol@LB@Unfolding Energy - mRNA 10.9969 kcal/mol@LB@Unfolding Energy - sRNA 13.8113 kcal/mol@LB@@LB@Position - mRNA 187 -- 220@LB@Position - sRNA 20 -- 59@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 27 -- 33@LB@ |
10 |
1.762e-05 |
0.005627 |
b1112 |
bhsA |
-13.86 |
0.010205 |
165 -- 186 |
1 -- 22 |
biofilm cell surface and signaling protein |
b0806 b0802 |
_____________164_____________________187\n_____________|_______________________|\n5'-UAA...UAAUU________AC_U___________AUAAG...AAC-3'\n______________GCUUG_CG__G_CAUUCAUCUGC\n______________|||||_||__|_||||||:||||\n______________CGAAC_GC__C_GUAAGUGGACG\n3'-UUU...GGUAG_____U__AA_____________-5'\n_____________|______________________|\n_____________23_____________________1\n |
180 -- 186 |
1 -- 7 |
-25.8922 kcal/mol |
3.94114 kcal/mol |
8.09964 kcal/mol |
164 187@LB@ | |@LB@5'-UAA...UAAUU AC U AUAAG...AAC-3'@LB@ GCUUG CG G CAUUCAUCUGC@LB@ ||||| || | ||||||:||||@LB@ CGAAC GC C GUAAGUGGACG@LB@3'-UUU...GGUAG U AA -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -13.86 kcal/mol@LB@Hybridization Energy -25.8922 kcal/mol@LB@Unfolding Energy - mRNA 3.94114 kcal/mol@LB@Unfolding Energy - sRNA 8.09964 kcal/mol@LB@@LB@Position - mRNA 165 -- 186@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 1 -- 7@LB@ |
97 |
0.002994 |
0.1087 |
b1452 |
yncE |
-13.85 |
0.010262 |
151 -- 196 |
50 -- 89 |
ATP-binding protein periplasmic function unknown |
|
_____________150_______________________________________________197\n_____________|_________________________________________________|\n5'-AUG...GCUUA_____GC_______AA______CAAAAAUAUC______UC_________CGUCA...AAA-3'\n______________GCGAA___AUUGUG____GCAG__________GGUUCA__AAAGGGAGU\n______________:||||___||||||____||||__________::||||__|||||:|||\n______________UGCUU___UAACAC____CGUC__________UUAAGU__UUUCCUUCA\n3'-UUU...CAGCA_____AGU______GAUA____A_______________UU_________UUCUG...ACG-5'\n_____________|_________________________________________________|\n_____________90________________________________________________49\n |
190 -- 196 |
50 -- 56 |
-28.7036 kcal/mol |
10.1778 kcal/mol |
4.68197 kcal/mol |
150 197@LB@ | |@LB@5'-AUG...GCUUA GC AA CAAAAAUAUC UC CGUCA...AAA-3'@LB@ GCGAA AUUGUG GCAG GGUUCA AAAGGGAGU@LB@ :|||| |||||| |||| ::|||| |||||:|||@LB@ UGCUU UAACAC CGUC UUAAGU UUUCCUUCA@LB@3'-UUU...CAGCA AGU GAUA A UU UUCUG...ACG-5'@LB@ | |@LB@ 90 49@LB@@LB@@LB@Energy -13.85 kcal/mol@LB@Hybridization Energy -28.7036 kcal/mol@LB@Unfolding Energy - mRNA 10.1778 kcal/mol@LB@Unfolding Energy - sRNA 4.68197 kcal/mol@LB@@LB@Position - mRNA 151 -- 196@LB@Position - sRNA 50 -- 89@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 50 -- 56@LB@ |
34 |
0.0002646 |
0.02697 |
b1206 |
dauA |
-13.80 |
0.010599 |
120 -- 158 |
1 -- 34 |
C4-dicarboxylic acid transporter |
|
_____________119_____________________________________159\n_____________|_______________________________________|\n5'-CCU...UGUCU_____A____U____A____CUA___CUCC_________CAUUU...UGA-3'\n______________GUAAU_UCCA_UUGU_UGAC___UGC____UUCACCUGC\n______________|:||:_:|||_|:|:_||||___|||____|||||||||\n______________CGUUG_GGGU_AGCG_ACUG___ACG____AAGUGGACG\n3'-UUU...CCUCG_____C_________A____CA____U____________-5'\n_____________|______________________________________|\n_____________35_____________________________________1\n |
152 -- 158 |
1 -- 7 |
-32.3364 kcal/mol |
3.2737 kcal/mol |
15.2664 kcal/mol |
119 159@LB@ | |@LB@5'-CCU...UGUCU A U A CUA CUCC CAUUU...UGA-3'@LB@ GUAAU UCCA UUGU UGAC UGC UUCACCUGC@LB@ |:||: :||| |:|: |||| ||| |||||||||@LB@ CGUUG GGGU AGCG ACUG ACG AAGUGGACG@LB@3'-UUU...CCUCG C A CA U -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -13.80 kcal/mol@LB@Hybridization Energy -32.3364 kcal/mol@LB@Unfolding Energy - mRNA 3.2737 kcal/mol@LB@Unfolding Energy - sRNA 15.2664 kcal/mol@LB@@LB@Position - mRNA 120 -- 158@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 1 -- 7@LB@ |
22 |
6.552e-05 |
0.01049 |
b3829 |
metE |
-13.68 |
0.011485 |
203 -- 246 |
1 -- 47 |
5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase |
|
_____________202_____________________________________________247\n_____________|_______________________________________________|\n5'-GAG...AAAAU________U__AUC____A_______G__UCCCUC_____G______GUCGC...GUG-3'\n______________GACAAUAU_GA_____AC_CCC_UCG_UU______GCGUU_GCCUGC\n______________||||||||_||_____||_|||_|||_||______||:||_:|||||\n______________CUGUUAUA_CU_____UG_GGG_AGC_AA______CGUAA_UGGACG\n3'-UUU...UCAUU________C__CGCGU__C___U___G__CUGCAA_____G______-5'\n_____________|______________________________________________|\n_____________48_____________________________________________1\n |
204 -- 210 |
40 -- 46 |
-38.0501 kcal/mol |
7.59426 kcal/mol |
16.7767 kcal/mol |
202 247@LB@ | |@LB@5'-GAG...AAAAU U AUC A G UCCCUC G GUCGC...GUG-3'@LB@ GACAAUAU GA AC CCC UCG UU GCGUU GCCUGC@LB@ |||||||| || || ||| ||| || ||:|| :|||||@LB@ CUGUUAUA CU UG GGG AGC AA CGUAA UGGACG@LB@3'-UUU...UCAUU C CGCGU C U G CUGCAA G -5'@LB@ | |@LB@ 48 1@LB@@LB@@LB@Energy -13.68 kcal/mol@LB@Hybridization Energy -38.0501 kcal/mol@LB@Unfolding Energy - mRNA 7.59426 kcal/mol@LB@Unfolding Energy - sRNA 16.7767 kcal/mol@LB@@LB@Position - mRNA 203 -- 246@LB@Position - sRNA 1 -- 47@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 40 -- 46@LB@ |
51 |
0.0005809 |
0.04013 |
b2507 |
guaA |
-13.60 |
0.012166 |
41 -- 74 |
55 -- 93 |
GMP synthetase (glutamine aminotransferase) |
|
_____________40______________________________________75\n_____________|_______________________________________|\n5'-GGC...GGAGU_______U___________G______GC___________CCACG...ACU-3'\n______________UUGUACG_AUCA_____GC_GUGCGG__AUUCAGGAAAG\n______________|:|||||_||||_____||_:|||:|__|||||::||||\n______________AGCAUGC_UAGU_____CG_UACGUC__UAAGUUUUUUC\n3'-UUU...GCCGC_______U____UAACA__A______AU___________CUUCA...ACG-5'\n_____________|_______________________________________|\n_____________94______________________________________54\n |
41 -- 47 |
87 -- 93 |
-31.8361 kcal/mol |
13.3993 kcal/mol |
4.84189 kcal/mol |
40 75@LB@ | |@LB@5'-GGC...GGAGU U G GC CCACG...ACU-3'@LB@ UUGUACG AUCA GC GUGCGG AUUCAGGAAAG@LB@ |:||||| |||| || :|||:| |||||::||||@LB@ AGCAUGC UAGU CG UACGUC UAAGUUUUUUC@LB@3'-UUU...GCCGC U UAACA A AU CUUCA...ACG-5'@LB@ | |@LB@ 94 54@LB@@LB@@LB@Energy -13.60 kcal/mol@LB@Hybridization Energy -31.8361 kcal/mol@LB@Unfolding Energy - mRNA 13.3993 kcal/mol@LB@Unfolding Energy - sRNA 4.84189 kcal/mol@LB@@LB@Position - mRNA 41 -- 74@LB@Position - sRNA 55 -- 93@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 87 -- 93@LB@ |
64 |
0.001067 |
0.05874 |
b3340 |
fusA |
-13.60 |
0.012173 |
191 -- 223 |
21 -- 57 |
protein chain elongation factor EF-G GTP-binding |
|
_____________190_____________________________________224\n_____________|_______________________________________|\n5'-AAC...UAAAC____________________CUC__A____A________ACGCU...ACA-3'\n______________GAGGAA_____ACAA_AUGG___GU_CAAC_CCCAUCGC\n______________:|||||_____||||_||||___|:_||||_||||||||\n______________UUCCUU_____UGUU_UACC___CG_GUUG_GGGUAGCG\n3'-UUU...GUUUU______CAUUC____A____U____C____C________AACUG...ACG-5'\n_____________|_______________________________________|\n_____________58______________________________________20\n |
217 -- 223 |
21 -- 27 |
-33.2696 kcal/mol |
6.00361 kcal/mol |
13.6712 kcal/mol |
190 224@LB@ | |@LB@5'-AAC...UAAAC CUC A A ACGCU...ACA-3'@LB@ GAGGAA ACAA AUGG GU CAAC CCCAUCGC@LB@ :||||| |||| |||| |: |||| ||||||||@LB@ UUCCUU UGUU UACC CG GUUG GGGUAGCG@LB@3'-UUU...GUUUU CAUUC A U C C AACUG...ACG-5'@LB@ | |@LB@ 58 20@LB@@LB@@LB@Energy -13.60 kcal/mol@LB@Hybridization Energy -33.2696 kcal/mol@LB@Unfolding Energy - mRNA 6.00361 kcal/mol@LB@Unfolding Energy - sRNA 13.6712 kcal/mol@LB@@LB@Position - mRNA 191 -- 223@LB@Position - sRNA 21 -- 57@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 21 -- 27@LB@ |
1 |
1.057e-08 |
3.724e-05 |
b0889 |
lrp |
-13.58 |
0.012310 |
166 -- 227 |
21 -- 70 |
leucine-responsive global transcriptional regulator |
|
_____________165_______________________________________________________________228\n_____________|_________________________________________________________________|\n5'-GUG...UCAGA___GAG____________AUAC__A_________AUAA___U__AUA___AGAA________G__AAAGA...AGC-3'\n______________CAG_____UAGGGAAGGA____AG_GAGACAAUA____UGG_AG___GCA____GCGCCC_U_GC\n______________|||_____:|:::|||||____||_:||||||||____|||_||___|||____:|||||_|_||\n______________GUC_____GUUUUUUCCU____UC_UUCUGUUAU____ACC_UC___CGU____UGCGGG_A_CG\n3'-UUU...GAUAC___AUUAA________________A___________________G_______________U_G__AACUG...ACG-5'\n_____________|_________________________________________________________________|\n_____________71________________________________________________________________20\n |
191 -- 197 |
41 -- 47 |
-39.3483 kcal/mol |
8.89245 kcal/mol |
16.878 kcal/mol |
165 228@LB@ | |@LB@5'-GUG...UCAGA GAG AUAC A AUAA U AUA AGAA G AAAGA...AGC-3'@LB@ CAG UAGGGAAGGA AG GAGACAAUA UGG AG GCA GCGCCC U GC@LB@ ||| :|:::||||| || :|||||||| ||| || ||| :||||| | ||@LB@ GUC GUUUUUUCCU UC UUCUGUUAU ACC UC CGU UGCGGG A CG@LB@3'-UUU...GAUAC AUUAA A G U G AACUG...ACG-5'@LB@ | |@LB@ 71 20@LB@@LB@@LB@Energy -13.58 kcal/mol@LB@Hybridization Energy -39.3483 kcal/mol@LB@Unfolding Energy - mRNA 8.89245 kcal/mol@LB@Unfolding Energy - sRNA 16.878 kcal/mol@LB@@LB@Position - mRNA 166 -- 227@LB@Position - sRNA 21 -- 70@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 41 -- 47@LB@ |
36 |
0.0002859 |
0.02798 |
b3927 |
glpF |
-13.42 |
0.013702 |
41 -- 78 |
5 -- 41 |
glycerol facilitator |
|
_____________40_____________________________________79\n_____________|______________________________________|\n5'-GAU...AAUAA____C___A___________UUA_____AG___CA___AUUUU...AAG-3'\n______________AUGG_GCG_UAACGCUCAUU___UGACG__GCA__CAC\n______________||||_|||_:|||||:|||:___|||||__|||__|||\n______________UACC_CGC_GUUGCGGGUAG___ACUGC__CGU__GUG\n3'-UUU...UGUUA____U_______________CGA_____AA___AA___GACG-5'\n_____________|______________________________________|\n_____________42_____________________________________4\n |
52 -- 58 |
25 -- 31 |
-39.917 kcal/mol |
11.2361 kcal/mol |
15.2629 kcal/mol |
40 79@LB@ | |@LB@5'-GAU...AAUAA C A UUA AG CA AUUUU...AAG-3'@LB@ AUGG GCG UAACGCUCAUU UGACG GCA CAC@LB@ |||| ||| :|||||:|||: ||||| ||| |||@LB@ UACC CGC GUUGCGGGUAG ACUGC CGU GUG@LB@3'-UUU...UGUUA U CGA AA AA GACG-5'@LB@ | |@LB@ 42 4@LB@@LB@@LB@Energy -13.42 kcal/mol@LB@Hybridization Energy -39.917 kcal/mol@LB@Unfolding Energy - mRNA 11.2361 kcal/mol@LB@Unfolding Energy - sRNA 15.2629 kcal/mol@LB@@LB@Position - mRNA 41 -- 78@LB@Position - sRNA 5 -- 41@LB@Position Seed - mRNA 52 -- 58@LB@Position Seed - sRNA 25 -- 31@LB@ |
196 |
0.008885 |
0.1548 |
b3052 |
hldE |
-13.36 |
0.014255 |
113 -- 160 |
38 -- 93 |
heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase |
|
_____________112______________________________________________________161\n_____________|________________________________________________________|\n5'-GCG...UGAAC_G________________________A___GGCUGGU______AAU__________UAUUA...CGC-3'\n______________U_GUGCGGG_CAA____GCUG_GCAG_AGU________GGAAG___GA_AGUAUGG\n______________|_||:||::_|||____|||:_||||_|:|________|||||___||_|:|||||\n______________A_CAUGCUU_GUU____CGAU_CGUC_UUA________CCUUC___CU_UUAUACC\n3'-UUU...GCCGC_G_______A___AACA____A____A___AGUUUUUU_____AUU__G_______UCGCG...ACG-5'\n_____________|________________________________________________________|\n_____________94_______________________________________________________37\n |
154 -- 160 |
38 -- 44 |
-32.7339 kcal/mol |
11.626 kcal/mol |
7.73696 kcal/mol |
112 161@LB@ | |@LB@5'-GCG...UGAAC G A GGCUGGU AAU UAUUA...CGC-3'@LB@ U GUGCGGG CAA GCUG GCAG AGU GGAAG GA AGUAUGG@LB@ | ||:||:: ||| |||: |||| |:| ||||| || |:|||||@LB@ A CAUGCUU GUU CGAU CGUC UUA CCUUC CU UUAUACC@LB@3'-UUU...GCCGC G A AACA A A AGUUUUUU AUU G UCGCG...ACG-5'@LB@ | |@LB@ 94 37@LB@@LB@@LB@Energy -13.36 kcal/mol@LB@Hybridization Energy -32.7339 kcal/mol@LB@Unfolding Energy - mRNA 11.626 kcal/mol@LB@Unfolding Energy - sRNA 7.73696 kcal/mol@LB@@LB@Position - mRNA 113 -- 160@LB@Position - sRNA 38 -- 93@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 38 -- 44@LB@ |
151 |
0.005924 |
0.1368 |
b3248 |
yhdE |
-13.35 |
0.014399 |
2 -- 41 |
1 -- 42 |
dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo-UTP pyrophosphatase |
|
_____________1___________________________________________42\n_____________|___________________________________________|\n__________5'-U_____C___A_______G_____C_________U______G__GGUGG...AGC-3'\n______________UAUGG_AGC__GGCGCU_GUCGU___AUGUUGC_UUCGCU_GU\n______________|||||_|||__::|||:_:|||:___|:|||||_|||:|:_|:\n______________AUACC_UCG__UUGCGG_UAGCG___UGCAACG_AAGUGG_CG\n3'-UUU...CUGUU_________CG______G_____AAC_______U______A__-5'\n_____________|__________________________________________|\n_____________43_________________________________________1\n |
25 -- 31 |
11 -- 17 |
-43.9582 kcal/mol |
15.3205 kcal/mol |
15.293 kcal/mol |
1 42@LB@ | |@LB@ 5'-U C A G C U G GGUGG...AGC-3'@LB@ UAUGG AGC GGCGCU GUCGU AUGUUGC UUCGCU GU@LB@ ||||| ||| ::|||: :|||: |:||||| |||:|: |:@LB@ AUACC UCG UUGCGG UAGCG UGCAACG AAGUGG CG@LB@3'-UUU...CUGUU CG G AAC U A -5'@LB@ | |@LB@ 43 1@LB@@LB@@LB@Energy -13.35 kcal/mol@LB@Hybridization Energy -43.9582 kcal/mol@LB@Unfolding Energy - mRNA 15.3205 kcal/mol@LB@Unfolding Energy - sRNA 15.293 kcal/mol@LB@@LB@Position - mRNA 2 -- 41@LB@Position - sRNA 1 -- 42@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 11 -- 17@LB@ |
143 |
0.005544 |
0.1363 |
b2936 |
loiP |
-13.30 |
0.014839 |
83 -- 152 |
1 -- 41 |
Phe-Phe periplasmic metalloprotease OM lipoprotein; low salt-inducible; Era-binding heat shock protein |
|
_____________82______________________________________________________________________153\n_____________|_______________________________________________________________________|\n5'-UUG...CUCGC___UU______UCUACU_______C____GCGCUUUUCCUUAUAC__AGACUGA____C____________AAACG...AAG-3'\n______________AUG__GCGCAA______CGCCCGU_CGCU________________UG_______GCGU_G_AUUCACCUGC\n______________|||__||||||______|||||:|_||||________________||_______:|||_|_||||||||||\n______________UAC__CGCGUU______GCGGGUA_GCGA________________AC_______UGCA_C_UAAGUGGACG\n3'-UUU...UGUUA___CU_____________________________________________________A_G__________-5'\n_____________|______________________________________________________________________|\n_____________42_____________________________________________________________________1\n |
146 -- 152 |
1 -- 7 |
-44.3719 kcal/mol |
15.78 kcal/mol |
15.2922 kcal/mol |
82 153@LB@ | |@LB@5'-UUG...CUCGC UU UCUACU C GCGCUUUUCCUUAUAC AGACUGA C AAACG...AAG-3'@LB@ AUG GCGCAA CGCCCGU CGCU UG GCGU G AUUCACCUGC@LB@ ||| |||||| |||||:| |||| || :||| | ||||||||||@LB@ UAC CGCGUU GCGGGUA GCGA AC UGCA C UAAGUGGACG@LB@3'-UUU...UGUUA CU A G -5'@LB@ | |@LB@ 42 1@LB@@LB@@LB@Energy -13.30 kcal/mol@LB@Hybridization Energy -44.3719 kcal/mol@LB@Unfolding Energy - mRNA 15.78 kcal/mol@LB@Unfolding Energy - sRNA 15.2922 kcal/mol@LB@@LB@Position - mRNA 83 -- 152@LB@Position - sRNA 1 -- 41@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 1 -- 7@LB@ |
129 |
0.00462 |
0.126 |
b1795 |
yeaQ |
-13.29 |
0.014930 |
139 -- 150 |
70 -- 81 |
UPF0410 family protein |
|
_____________138__________151\n_____________|____________|\n5'-AUA...CCGAU____________UUUUU...UCC-3'\n______________GUUGUGCUAUGC\n______________:|||||||||||\n______________UAACACGAUACG\n3'-UUU...UUAGU____________UCAUU...ACG-5'\n_____________|____________|\n_____________82___________69\n |
144 -- 150 |
70 -- 76 |
-18.6071 kcal/mol |
3.49189 kcal/mol |
1.8201 kcal/mol |
138 151@LB@ | |@LB@5'-AUA...CCGAU UUUUU...UCC-3'@LB@ GUUGUGCUAUGC@LB@ :|||||||||||@LB@ UAACACGAUACG@LB@3'-UUU...UUAGU UCAUU...ACG-5'@LB@ | |@LB@ 82 69@LB@@LB@@LB@Energy -13.29 kcal/mol@LB@Hybridization Energy -18.6071 kcal/mol@LB@Unfolding Energy - mRNA 3.49189 kcal/mol@LB@Unfolding Energy - sRNA 1.8201 kcal/mol@LB@@LB@Position - mRNA 139 -- 150@LB@Position - sRNA 70 -- 81@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 70 -- 76@LB@ |
69 |
0.001222 |
0.06239 |
b0699 |
ybfA |
-13.19 |
0.016050 |
183 -- 205 |
37 -- 62 |
DUF2517 family protein |
|
_____________182________________________206\n_____________|__________________________|\n5'-AUG...AGAUA____________AAA___________ACUCU...GGA-3'\n______________CAAAAGGGGGAG______AGUAUGGA\n______________|||||::||:||______|:||||||\n______________GUUUUUUCCUUC______UUAUACCU\n3'-UUU...AUUAA____________AUUCUG________CGCGU...ACG-5'\n_____________|__________________________|\n_____________63_________________________36\n |
199 -- 205 |
37 -- 43 |
-21.7 kcal/mol |
3.27833 kcal/mol |
5.2343 kcal/mol |
182 206@LB@ | |@LB@5'-AUG...AGAUA AAA ACUCU...GGA-3'@LB@ CAAAAGGGGGAG AGUAUGGA@LB@ |||||::||:|| |:||||||@LB@ GUUUUUUCCUUC UUAUACCU@LB@3'-UUU...AUUAA AUUCUG CGCGU...ACG-5'@LB@ | |@LB@ 63 36@LB@@LB@@LB@Energy -13.19 kcal/mol@LB@Hybridization Energy -21.7 kcal/mol@LB@Unfolding Energy - mRNA 3.27833 kcal/mol@LB@Unfolding Energy - sRNA 5.2343 kcal/mol@LB@@LB@Position - mRNA 183 -- 205@LB@Position - sRNA 37 -- 62@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 37 -- 43@LB@ |
172 |
0.007014 |
0.1437 |
b3430 |
glgC |
-13.14 |
0.016567 |
21 -- 80 |
1 -- 39 |
glucose-1-phosphate adenylyltransferase |
|
_____________20______________________________________________________________81\n_____________|_______________________________________________________________|\n5'-CAG...CUCUC___U___UUUUUGAUCGCAAUU______A_________G__AACAGAGAU_____________UGGGG...UGA-3'\n______________GGA_CGC_______________AACGCC___CGCUUGA_GU_________UGU_UUUACCUGC\n______________|||_|||_______________||||||___|||||||_||_________||:_||:||||||\n______________CCU_GCG_______________UUGCGG___GCGAACU_CA_________ACG_AAGUGGACG\n3'-UUU...UUAUA___C________________________GUA_______G______________U_________-5'\n_____________|______________________________________________________________|\n_____________40_____________________________________________________________1\n |
74 -- 80 |
1 -- 7 |
-41.5646 kcal/mol |
13.1395 kcal/mol |
15.291 kcal/mol |
20 81@LB@ | |@LB@5'-CAG...CUCUC U UUUUUGAUCGCAAUU A G AACAGAGAU UGGGG...UGA-3'@LB@ GGA CGC AACGCC CGCUUGA GU UGU UUUACCUGC@LB@ ||| ||| |||||| ||||||| || ||: ||:||||||@LB@ CCU GCG UUGCGG GCGAACU CA ACG AAGUGGACG@LB@3'-UUU...UUAUA C GUA G U -5'@LB@ | |@LB@ 40 1@LB@@LB@@LB@Energy -13.14 kcal/mol@LB@Hybridization Energy -41.5646 kcal/mol@LB@Unfolding Energy - mRNA 13.1395 kcal/mol@LB@Unfolding Energy - sRNA 15.291 kcal/mol@LB@@LB@Position - mRNA 21 -- 80@LB@Position - sRNA 1 -- 39@LB@Position Seed - mRNA 74 -- 80@LB@Position Seed - sRNA 1 -- 7@LB@ |
125 |
0.004538 |
0.1258 |
b0951 |
pqiB |
-12.90 |
0.019327 |
185 -- 205 |
37 -- 57 |
paraquat-inducible SoxRS-regulated MCE domain protein |
|
_____________184___________________206\n_____________|_____________________|\n5'-CUG...AGCAU______UCCU___________AUCUA...UUC-3'\n______________GAGGAG____GACAGUAUGGA\n______________:||||:____||||:||||||\n______________UUCCUU____CUGUUAUACCU\n3'-UUU...GUUUU______CAUU___________CGCGU...ACG-5'\n_____________|_____________________|\n_____________58____________________36\n |
199 -- 205 |
37 -- 43 |
-21.8788 kcal/mol |
5.24969 kcal/mol |
3.68958 kcal/mol |
184 206@LB@ | |@LB@5'-CUG...AGCAU UCCU AUCUA...UUC-3'@LB@ GAGGAG GACAGUAUGGA@LB@ :||||: ||||:||||||@LB@ UUCCUU CUGUUAUACCU@LB@3'-UUU...GUUUU CAUU CGCGU...ACG-5'@LB@ | |@LB@ 58 36@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -21.8788 kcal/mol@LB@Unfolding Energy - mRNA 5.24969 kcal/mol@LB@Unfolding Energy - sRNA 3.68958 kcal/mol@LB@@LB@Position - mRNA 185 -- 205@LB@Position - sRNA 37 -- 57@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 37 -- 43@LB@ |
198 |
0.008909 |
0.1548 |
b2205 |
napG |
-12.90 |
0.019402 |
153 -- 203 |
39 -- 89 |
ferredoxin-type protein |
|
_____________152_____________________________________________________204\n_____________|_______________________________________________________|\n5'-AAG...AAGAG_____CU____GAA____________CAAACU________U______C__U____UCCCG...GGU-3'\n______________ACGGA__UCAA___GUGC___GCGGU______GGAGAAGG__GUAAG_CA_UAUG\n______________|||:|__||||___||||___||:||______::|:||||__|||||_||_||||\n______________UGCUU__AGUU___CACG___CGUCA______UUUUUUCC__CAUUC_GU_AUAC\n3'-UUU...CAGCA___________AA_____AUA_____UUAAG_________UU_____U__U____CUCGC...ACG-5'\n_____________|_______________________________________________________|\n_____________90______________________________________________________38\n |
183 -- 189 |
54 -- 60 |
-32.365 kcal/mol |
12.639 kcal/mol |
6.82686 kcal/mol |
152 204@LB@ | |@LB@5'-AAG...AAGAG CU GAA CAAACU U C U UCCCG...GGU-3'@LB@ ACGGA UCAA GUGC GCGGU GGAGAAGG GUAAG CA UAUG@LB@ |||:| |||| |||| ||:|| ::|:|||| ||||| || ||||@LB@ UGCUU AGUU CACG CGUCA UUUUUUCC CAUUC GU AUAC@LB@3'-UUU...CAGCA AA AUA UUAAG UU U U CUCGC...ACG-5'@LB@ | |@LB@ 90 38@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -32.365 kcal/mol@LB@Unfolding Energy - mRNA 12.639 kcal/mol@LB@Unfolding Energy - sRNA 6.82686 kcal/mol@LB@@LB@Position - mRNA 153 -- 203@LB@Position - sRNA 39 -- 89@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 54 -- 60@LB@ |
27 |
0.0001238 |
0.01616 |
b0081 |
mraZ |
-12.77 |
0.021128 |
157 -- 196 |
45 -- 91 |
RsmH methytransferase inhibitor |
|
_____________156_____________________________________________197\n_____________|_______________________________________________|\n5'-GAU...UUUCA___G____________GG_____A____GG___U_____________UGGCA...AAA-3'\n______________GUG_GA___AAUUGUG____GCA__AGU__GAA_AAGG_GGUGAGGC\n______________||:_||___|||||||____|||__|:|__:||_||||_:||:||:|\n______________CAU_CU___UUAACAC____CGU__UUA__UUU_UUCC_UCAUUCUG\n3'-UUU...CGCAG___G__UAG_______GAUA___CA___AG___U____U________UUAUA...ACG-5'\n_____________|_______________________________________________|\n_____________92______________________________________________44\n |
190 -- 196 |
45 -- 51 |
-27.6686 kcal/mol |
9.1766 kcal/mol |
5.72765 kcal/mol |
156 197@LB@ | |@LB@5'-GAU...UUUCA G GG A GG U UGGCA...AAA-3'@LB@ GUG GA AAUUGUG GCA AGU GAA AAGG GGUGAGGC@LB@ ||: || ||||||| ||| |:| :|| |||| :||:||:|@LB@ CAU CU UUAACAC CGU UUA UUU UUCC UCAUUCUG@LB@3'-UUU...CGCAG G UAG GAUA CA AG U U UUAUA...ACG-5'@LB@ | |@LB@ 92 44@LB@@LB@@LB@Energy -12.77 kcal/mol@LB@Hybridization Energy -27.6686 kcal/mol@LB@Unfolding Energy - mRNA 9.1766 kcal/mol@LB@Unfolding Energy - sRNA 5.72765 kcal/mol@LB@@LB@Position - mRNA 157 -- 196@LB@Position - sRNA 45 -- 91@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 45 -- 51@LB@ |
7 |
8.167e-06 |
0.003921 |
b1531 |
marA |
-12.70 |
0.022098 |
183 -- 204 |
40 -- 62 |
multiple antibiotic resistance transcriptional regulator |
|
_____________182_____________________205\n_____________|_______________________|\n5'-AAG...GUAAA______________U________CCAGA...AGC-3'\n______________CAAAAAA_GAGGUA_GACGAUGU\n______________|||||||_||:|||_|||:||:|\n______________GUUUUUU_CUUCAU_CUGUUAUA\n3'-UUU...AUUAA_______C______U________CCUCG...ACG-5'\n_____________|_______________________|\n_____________63______________________39\n |
198 -- 204 |
40 -- 46 |
-19.9636 kcal/mol |
3.18051 kcal/mol |
4.08673 kcal/mol |
182 205@LB@ | |@LB@5'-AAG...GUAAA U CCAGA...AGC-3'@LB@ CAAAAAA GAGGUA GACGAUGU@LB@ ||||||| ||:||| |||:||:|@LB@ GUUUUUU CUUCAU CUGUUAUA@LB@3'-UUU...AUUAA C U CCUCG...ACG-5'@LB@ | |@LB@ 63 39@LB@@LB@@LB@Energy -12.70 kcal/mol@LB@Hybridization Energy -19.9636 kcal/mol@LB@Unfolding Energy - mRNA 3.18051 kcal/mol@LB@Unfolding Energy - sRNA 4.08673 kcal/mol@LB@@LB@Position - mRNA 183 -- 204@LB@Position - sRNA 40 -- 62@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 40 -- 46@LB@ |
180 |
0.007638 |
0.1495 |
b2007 |
yeeX |
-12.65 |
0.022752 |
43 -- 93 |
41 -- 87 |
UPF0265 family protein |
|
_____________42____________________________________________________94\n_____________|_____________________________________________________|\n5'-AUC...CUUCA______UCU______C___UUC_______C______UAAAG____U_______AAAAG...AAA-3'\n______________GAAUCA____UGCUG_UGC___GAUUCAG__AAGGA_____GGUA_GAUAGUG\n______________||||||____||||:_|||___:|||||:__|||||_____:|||_||:|:|:\n______________CUUAGU____ACGAU_ACG___UUAAGUU__UUCCU_____UCAU_CUGUUAU\n3'-UUU...GCAUG______UAAC_________UCA_______UU______________U_______ACCUC...ACG-5'\n_____________|_____________________________________________________|\n_____________88____________________________________________________40\n |
87 -- 93 |
41 -- 47 |
-32.6236 kcal/mol |
14.1148 kcal/mol |
5.85929 kcal/mol |
42 94@LB@ | |@LB@5'-AUC...CUUCA UCU C UUC C UAAAG U AAAAG...AAA-3'@LB@ GAAUCA UGCUG UGC GAUUCAG AAGGA GGUA GAUAGUG@LB@ |||||| ||||: ||| :|||||: ||||| :||| ||:|:|:@LB@ CUUAGU ACGAU ACG UUAAGUU UUCCU UCAU CUGUUAU@LB@3'-UUU...GCAUG UAAC UCA UU U ACCUC...ACG-5'@LB@ | |@LB@ 88 40@LB@@LB@@LB@Energy -12.65 kcal/mol@LB@Hybridization Energy -32.6236 kcal/mol@LB@Unfolding Energy - mRNA 14.1148 kcal/mol@LB@Unfolding Energy - sRNA 5.85929 kcal/mol@LB@@LB@Position - mRNA 43 -- 93@LB@Position - sRNA 41 -- 87@LB@Position Seed - mRNA 87 -- 93@LB@Position Seed - sRNA 41 -- 47@LB@ |
192 |
0.008587 |
0.1548 |
b2366 |
dsdA |
-12.64 |
0.022913 |
191 -- 232 |
21 -- 49 |
D-serine dehydratase |
|
_____________190________________________________________233\n_____________|__________________________________________|\n5'-AUU...GCAAA______UAC______AAA___UAAAAUGAACU__________CCAGU...CCU-3'\n______________GAGACG___UAUGGA___CGC___________CGCUCAUCGC\n______________:||||:___||||||___|||___________|||:||||||\n______________UUCUGU___AUACCU___GCG___________GCGGGUAGCG\n3'-UUU...CUUCA______U________C_____UU___________________AACUG...ACG-5'\n_____________|__________________________________________|\n_____________50_________________________________________20\n |
226 -- 232 |
21 -- 27 |
-32.1247 kcal/mol |
5.89431 kcal/mol |
13.5917 kcal/mol |
190 233@LB@ | |@LB@5'-AUU...GCAAA UAC AAA UAAAAUGAACU CCAGU...CCU-3'@LB@ GAGACG UAUGGA CGC CGCUCAUCGC@LB@ :||||: |||||| ||| |||:||||||@LB@ UUCUGU AUACCU GCG GCGGGUAGCG@LB@3'-UUU...CUUCA U C UU AACUG...ACG-5'@LB@ | |@LB@ 50 20@LB@@LB@@LB@Energy -12.64 kcal/mol@LB@Hybridization Energy -32.1247 kcal/mol@LB@Unfolding Energy - mRNA 5.89431 kcal/mol@LB@Unfolding Energy - sRNA 13.5917 kcal/mol@LB@@LB@Position - mRNA 191 -- 232@LB@Position - sRNA 21 -- 49@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 21 -- 27@LB@ |
33 |
0.0002072 |
0.02212 |
b2101 |
yegW |
-12.62 |
0.023301 |
188 -- 205 |
37 -- 56 |
putative DNA-binding transcriptional regulator |
|
_____________187__________________206\n_____________|____________________|\n5'-CGG...CCGGC_____A______________ACAAG...AAA-3'\n______________AGGAA__AAGACAA_AUGGA\n______________|||||__|||||||_|||||\n______________UCCUU__UUCUGUU_UACCU\n3'-UUU...UUUUU_____CA_______A_____CGCGU...ACG-5'\n_____________|____________________|\n_____________57___________________36\n |
194 -- 200 |
43 -- 49 |
-17.4469 kcal/mol |
1.13054 kcal/mol |
3.6645 kcal/mol |
187 206@LB@ | |@LB@5'-CGG...CCGGC A ACAAG...AAA-3'@LB@ AGGAA AAGACAA AUGGA@LB@ ||||| ||||||| |||||@LB@ UCCUU UUCUGUU UACCU@LB@3'-UUU...UUUUU CA A CGCGU...ACG-5'@LB@ | |@LB@ 57 36@LB@@LB@@LB@Energy -12.62 kcal/mol@LB@Hybridization Energy -17.4469 kcal/mol@LB@Unfolding Energy - mRNA 1.13054 kcal/mol@LB@Unfolding Energy - sRNA 3.6645 kcal/mol@LB@@LB@Position - mRNA 188 -- 205@LB@Position - sRNA 37 -- 56@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 43 -- 49@LB@ |
29 |
0.0001601 |
0.01945 |
b3472 |
dcrB |
-12.60 |
0.023536 |
186 -- 203 |
41 -- 59 |
putative lipoprotein |
|
_____________185_________________204\n_____________|___________________|\n5'-UGG...UUAUC_____________U_____CGCAA...UCG-3'\n______________GAAAGGAAG_AAG_CAAUG\n______________:||||||||_|||_||||:\n______________UUUUCCUUC_UUC_GUUAU\n3'-UUU...AAGUU_________A___U_____ACCUC...ACG-5'\n_____________|___________________|\n_____________60__________________40\n |
188 -- 194 |
51 -- 57 |
-16.362 kcal/mol |
1.80431 kcal/mol |
1.95655 kcal/mol |
185 204@LB@ | |@LB@5'-UGG...UUAUC U CGCAA...UCG-3'@LB@ GAAAGGAAG AAG CAAUG@LB@ :|||||||| ||| ||||:@LB@ UUUUCCUUC UUC GUUAU@LB@3'-UUU...AAGUU A U ACCUC...ACG-5'@LB@ | |@LB@ 60 40@LB@@LB@@LB@Energy -12.60 kcal/mol@LB@Hybridization Energy -16.362 kcal/mol@LB@Unfolding Energy - mRNA 1.80431 kcal/mol@LB@Unfolding Energy - sRNA 1.95655 kcal/mol@LB@@LB@Position - mRNA 186 -- 203@LB@Position - sRNA 41 -- 59@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 51 -- 57@LB@ |
48 |
0.0005049 |
0.03706 |
b2331 |
smrB |
-12.55 |
0.024312 |
152 -- 200 |
43 -- 92 |
putative DNA endonuclease |
|
_____________151__________________________________________________201\n_____________|____________________________________________________|\n5'-UCA...GAUUG__C__________GUAAAC_______GAAAA_______UA___AC_______AUGAA...GAC-3'\n______________CG_UACGAGUCGG________UGUAG_____UUAGAAA__GAG___AGAUAA\n______________||_|||||:||::________||:||_____|:|:|||__||:___|||:||\n______________GC_AUGCUUAGUU________ACGUC_____AGUUUUU__CUU___UCUGUU\n3'-UUU...CCGCA_____________AACACGAU_____AUUA________UC___CAU______AUACC...ACG-5'\n_____________|____________________________________________________|\n_____________93___________________________________________________42\n |
158 -- 164 |
81 -- 87 |
-25.319 kcal/mol |
6.91043 kcal/mol |
5.86211 kcal/mol |
151 201@LB@ | |@LB@5'-UCA...GAUUG C GUAAAC GAAAA UA AC AUGAA...GAC-3'@LB@ CG UACGAGUCGG UGUAG UUAGAAA GAG AGAUAA@LB@ || |||||:||:: ||:|| |:|:||| ||: |||:||@LB@ GC AUGCUUAGUU ACGUC AGUUUUU CUU UCUGUU@LB@3'-UUU...CCGCA AACACGAU AUUA UC CAU AUACC...ACG-5'@LB@ | |@LB@ 93 42@LB@@LB@@LB@Energy -12.55 kcal/mol@LB@Hybridization Energy -25.319 kcal/mol@LB@Unfolding Energy - mRNA 6.91043 kcal/mol@LB@Unfolding Energy - sRNA 5.86211 kcal/mol@LB@@LB@Position - mRNA 152 -- 200@LB@Position - sRNA 43 -- 92@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 81 -- 87@LB@ |
30 |
0.0001707 |
0.01997 |
b1847 |
yebF |
-12.53 |
0.024655 |
175 -- 194 |
68 -- 88 |
extracellular Colicin M immunity family protein |
|
_____________174___________________195\n_____________|_____________________|\n5'-AAC...UCUCC__________________G__AAAAA...CAA-3'\n______________UGAAUC_AUUGUGCUAUG_AG\n______________:|||||_|||||||||||_||\n______________GCUUAG_UAACACGAUAC_UC\n3'-UUU...AGCAU______U___________G__AUUAA...ACG-5'\n_____________|_____________________|\n_____________89____________________67\n |
185 -- 191 |
71 -- 77 |
-25.1828 kcal/mol |
8.15856 kcal/mol |
4.50023 kcal/mol |
174 195@LB@ | |@LB@5'-AAC...UCUCC G AAAAA...CAA-3'@LB@ UGAAUC AUUGUGCUAUG AG@LB@ :||||| ||||||||||| ||@LB@ GCUUAG UAACACGAUAC UC@LB@3'-UUU...AGCAU U G AUUAA...ACG-5'@LB@ | |@LB@ 89 67@LB@@LB@@LB@Energy -12.53 kcal/mol@LB@Hybridization Energy -25.1828 kcal/mol@LB@Unfolding Energy - mRNA 8.15856 kcal/mol@LB@Unfolding Energy - sRNA 4.50023 kcal/mol@LB@@LB@Position - mRNA 175 -- 194@LB@Position - sRNA 68 -- 88@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 71 -- 77@LB@ |
42 |
0.0003514 |
0.02948 |
b3847 |
pepQ |
-12.53 |
0.024661 |
145 -- 205 |
37 -- 89 |
proline dipeptidase |
|
_____________144______________________________________________________________206\n_____________|________________________________________________________________|\n5'-UUG...UCUGG_________________AGA_____AGACU___GG________ACA____GGUAA___A_____AUCAC...UUC-3'\n______________AUGAA_CGA_UGUGCUA___UGCGG_____UAA__UCAAAAAA___GAAG______AA_AUGGA\n______________|:|||_|:|_|||||||___|||:|_____|||__||||||||___||||______||_|||||\n______________UGCUU_GUU_ACACGAU___ACGUC_____AUU__AGUUUUUU___CUUC______UU_UACCU\n3'-UUU...CAGCA_____A___A_______________________A_________C______AUUCUG__A_____CGCGU...ACG-5'\n_____________|________________________________________________________________|\n_____________90_______________________________________________________________36\n |
153 -- 159 |
73 -- 79 |
-31.666 kcal/mol |
11.3417 kcal/mol |
7.78939 kcal/mol |
144 206@LB@ | |@LB@5'-UUG...UCUGG AGA AGACU GG ACA GGUAA A AUCAC...UUC-3'@LB@ AUGAA CGA UGUGCUA UGCGG UAA UCAAAAAA GAAG AA AUGGA@LB@ |:||| |:| ||||||| |||:| ||| |||||||| |||| || |||||@LB@ UGCUU GUU ACACGAU ACGUC AUU AGUUUUUU CUUC UU UACCU@LB@3'-UUU...CAGCA A A A C AUUCUG A CGCGU...ACG-5'@LB@ | |@LB@ 90 36@LB@@LB@@LB@Energy -12.53 kcal/mol@LB@Hybridization Energy -31.666 kcal/mol@LB@Unfolding Energy - mRNA 11.3417 kcal/mol@LB@Unfolding Energy - sRNA 7.78939 kcal/mol@LB@@LB@Position - mRNA 145 -- 205@LB@Position - sRNA 37 -- 89@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 73 -- 79@LB@ |
67 |
0.00114 |
0.05992 |
b4141 |
yjeH |
-12.53 |
0.024616 |
129 -- 146 |
73 -- 89 |
putative transporter |
|
_____________128________________147\n_____________|__________________|\n5'-CAG...CAUAA_______U__________CCAUC...CUG-3'\n______________GCGAAUC_GAUUGUGCUA\n______________:||||||_:|||||||||\n______________UGCUUAG_UUAACACGAU\n3'-UUU...CAGCA__________________ACGUC...ACG-5'\n_____________|__________________|\n_____________90_________________72\n |
140 -- 146 |
73 -- 79 |
-22.1843 kcal/mol |
7.4128 kcal/mol |
2.24587 kcal/mol |
128 147@LB@ | |@LB@5'-CAG...CAUAA U CCAUC...CUG-3'@LB@ GCGAAUC GAUUGUGCUA@LB@ :|||||| :|||||||||@LB@ UGCUUAG UUAACACGAU@LB@3'-UUU...CAGCA ACGUC...ACG-5'@LB@ | |@LB@ 90 72@LB@@LB@@LB@Energy -12.53 kcal/mol@LB@Hybridization Energy -22.1843 kcal/mol@LB@Unfolding Energy - mRNA 7.4128 kcal/mol@LB@Unfolding Energy - sRNA 2.24587 kcal/mol@LB@@LB@Position - mRNA 129 -- 146@LB@Position - sRNA 73 -- 89@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 73 -- 79@LB@ |
21 |
6.29e-05 |
0.01049 |
b4040 |
ubiA |
-12.44 |
0.026053 |
187 -- 207 |
35 -- 59 |
p-hydroxybenzoate octaprenyltransferase |
|
_____________186_______________________208\n_____________|_________________________|\n5'-AGC...GUACU________AAA______________GGAGU...UAU-3'\n______________AAGAGGAA_______AAUAUGGAGU\n______________||:|||||_______|||||||||:\n______________UUUUCCUU_______UUAUACCUCG\n3'-UUU...AAGUU________CAUUCUG__________CGUUG...ACG-5'\n_____________|_________________________|\n_____________60________________________34\n |
201 -- 207 |
35 -- 41 |
-18.3412 kcal/mol |
1.63668 kcal/mol |
4.22714 kcal/mol |
186 208@LB@ | |@LB@5'-AGC...GUACU AAA GGAGU...UAU-3'@LB@ AAGAGGAA AAUAUGGAGU@LB@ ||:||||| |||||||||:@LB@ UUUUCCUU UUAUACCUCG@LB@3'-UUU...AAGUU CAUUCUG CGUUG...ACG-5'@LB@ | |@LB@ 60 34@LB@@LB@@LB@Energy -12.44 kcal/mol@LB@Hybridization Energy -18.3412 kcal/mol@LB@Unfolding Energy - mRNA 1.63668 kcal/mol@LB@Unfolding Energy - sRNA 4.22714 kcal/mol@LB@@LB@Position - mRNA 187 -- 207@LB@Position - sRNA 35 -- 59@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 35 -- 41@LB@ |
81 |
0.001932 |
0.08273 |
b2763 |
cysI |
-12.36 |
0.027367 |
234 -- 285 |
1 -- 58 |
sulfite reductase beta subunit NAD(P)-binding heme-binding |
|
_____________233_________________________________________________________286\n_____________|___________________________________________________________|\n5'-GAA...UGGUC_______AACU_____ACGCC__________AA______A___AA_____AC_______GCGGC...CGG-3'\n______________GAAGGAA____GACAG_____GAGCGC_AUG______GC_UGA____GCA__UACCUGC\n______________:||||||____||||:_____||||||_|:|______||_|||____|||__:||||||\n______________UUUCCUU____CUGUU_____CUCGCG_UGC______CG_ACU____CGU__GUGGACG\n3'-UUU...AGUUU_______CAUU_____AUAC_______U___GGGUAG__A___GCAA___AA_______-5'\n_____________|__________________________________________________________|\n_____________59_________________________________________________________1\n |
279 -- 285 |
1 -- 7 |
-40.3147 kcal/mol |
11.0832 kcal/mol |
16.8724 kcal/mol |
233 286@LB@ | |@LB@5'-GAA...UGGUC AACU ACGCC AA A AA AC GCGGC...CGG-3'@LB@ GAAGGAA GACAG GAGCGC AUG GC UGA GCA UACCUGC@LB@ :|||||| ||||: |||||| |:| || ||| ||| :||||||@LB@ UUUCCUU CUGUU CUCGCG UGC CG ACU CGU GUGGACG@LB@3'-UUU...AGUUU CAUU AUAC U GGGUAG A GCAA AA -5'@LB@ | |@LB@ 59 1@LB@@LB@@LB@Energy -12.36 kcal/mol@LB@Hybridization Energy -40.3147 kcal/mol@LB@Unfolding Energy - mRNA 11.0832 kcal/mol@LB@Unfolding Energy - sRNA 16.8724 kcal/mol@LB@@LB@Position - mRNA 234 -- 285@LB@Position - sRNA 1 -- 58@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 1 -- 7@LB@ |
124 |
0.004441 |
0.1258 |
b1656 |
sodB |
-12.34 |
0.027802 |
164 -- 220 |
1 -- 93 |
superoxide dismutase Fe |
|
_____________163____________________________________________________________________________________________221\n_____________|______________________________________________________________________________________________|\n5'-UCU...GGCUA_________________________AAUUAA___U________________________A________AU___AA___________________ACUAC...AGA-3'\n______________UUGUACG____________UAUGCA______UAA_AAAGGA______________GAGU_GCAAUGUC__UCG_____________UUACCUGC\n______________|:|||||____________||||||______:||_||||||______________|||:_||||:|:|__|||_____________|:||||||\n______________AGCAUGC____________AUACGU______GUU_UUUCCU______________CUCG_CGUUGCGG__AGC_____________AGUGGACG\n3'-UUU...GCCGC_______UUAGUUAACACG______CAUUAA___U______UCAUUCUGUUAUAC_____________GU___GAACUGCAACGUA________-5'\n_____________|_____________________________________________________________________________________________|\n_____________94____________________________________________________________________________________________1\n |
214 -- 220 |
1 -- 7 |
-45.1977 kcal/mol |
11.9384 kcal/mol |
20.925 kcal/mol |
163 221@LB@ | |@LB@5'-UCU...GGCUA AAUUAA U A AU AA ACUAC...AGA-3'@LB@ UUGUACG UAUGCA UAA AAAGGA GAGU GCAAUGUC UCG UUACCUGC@LB@ |:||||| |||||| :|| |||||| |||: ||||:|:| ||| |:||||||@LB@ AGCAUGC AUACGU GUU UUUCCU CUCG CGUUGCGG AGC AGUGGACG@LB@3'-UUU...GCCGC UUAGUUAACACG CAUUAA U UCAUUCUGUUAUAC GU GAACUGCAACGUA -5'@LB@ | |@LB@ 94 1@LB@@LB@@LB@Energy -12.34 kcal/mol@LB@Hybridization Energy -45.1977 kcal/mol@LB@Unfolding Energy - mRNA 11.9384 kcal/mol@LB@Unfolding Energy - sRNA 20.925 kcal/mol@LB@@LB@Position - mRNA 164 -- 220@LB@Position - sRNA 1 -- 93@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 1 -- 7@LB@ |
133 |
0.004969 |
0.1313 |
b0148 |
hrpB |
-12.31 |
0.028366 |
190 -- 234 |
2 -- 40 |
putative ATP-dependent helicase |
|
_____________189___________________________________________235\n_____________|_____________________________________________|\n5'-GCA...CCCUC________UU___G________GCC______UGCCGUC_______AAUUA...AAU-3'\n______________UGGAGCGU__UGU_UCGUCGUU___CGUUGC_______UUACCUG\n______________|||||||:__:|:_:|:|||:|___||||||_______|:|||||\n______________ACCUCGCG__GCG_GGUAGCGA___GCAACG_______AGUGGAC\n3'-UUU...GUUAU________UU____________ACU______UA____________G-5'\n_____________|_____________________________________________|\n_____________41____________________________________________1\n |
228 -- 234 |
2 -- 8 |
-41.1674 kcal/mol |
13.5737 kcal/mol |
15.2914 kcal/mol |
189 235@LB@ | |@LB@5'-GCA...CCCUC UU G GCC UGCCGUC AAUUA...AAU-3'@LB@ UGGAGCGU UGU UCGUCGUU CGUUGC UUACCUG@LB@ |||||||: :|: :|:|||:| |||||| |:|||||@LB@ ACCUCGCG GCG GGUAGCGA GCAACG AGUGGAC@LB@3'-UUU...GUUAU UU ACU UA G-5'@LB@ | |@LB@ 41 1@LB@@LB@@LB@Energy -12.31 kcal/mol@LB@Hybridization Energy -41.1674 kcal/mol@LB@Unfolding Energy - mRNA 13.5737 kcal/mol@LB@Unfolding Energy - sRNA 15.2914 kcal/mol@LB@@LB@Position - mRNA 190 -- 234@LB@Position - sRNA 2 -- 40@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 2 -- 8@LB@ |
79 |
0.001882 |
0.08273 |
b2219 |
atoS |
-12.26 |
0.029240 |
6 -- 44 |
51 -- 94 |
sensory histidine kinase in two-component regulatory system with AtoC |
|
_____________5_____________________________________________45\n_____________|_____________________________________________|\n______5'-UCAGG__________AA__A_____AA_______U__________C____CUCCG...AUA-3'\n______________GUUGUACGAA__GA____GC_____GGUA_UUCAAAGGGG_GAAG\n______________||:|||||||__:|____||_____:|||_||||||:::|_||||\n______________CAGCAUGCUU__UU____CG_____UCAU_AAGUUUUUUC_CUUC\n3'-UUU...AGCCG__________AG__AACA__AUACG____U_______________AUUCU...ACG-5'\n_____________|_____________________________________________|\n_____________95____________________________________________50\n |
9 -- 15 |
85 -- 91 |
-28.4119 kcal/mol |
11.2894 kcal/mol |
4.86774 kcal/mol |
5 45@LB@ | |@LB@ 5'-UCAGG AA A AA U C CUCCG...AUA-3'@LB@ GUUGUACGAA GA GC GGUA UUCAAAGGGG GAAG@LB@ ||:||||||| :| || :||| ||||||:::| ||||@LB@ CAGCAUGCUU UU CG UCAU AAGUUUUUUC CUUC@LB@3'-UUU...AGCCG AG AACA AUACG U AUUCU...ACG-5'@LB@ | |@LB@ 95 50@LB@@LB@@LB@Energy -12.26 kcal/mol@LB@Hybridization Energy -28.4119 kcal/mol@LB@Unfolding Energy - mRNA 11.2894 kcal/mol@LB@Unfolding Energy - sRNA 4.86774 kcal/mol@LB@@LB@Position - mRNA 6 -- 44@LB@Position - sRNA 51 -- 94@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 85 -- 91@LB@ |
14 |
2.236e-05 |
0.005627 |
b3306 |
rpsH |
-12.22 |
0.029933 |
187 -- 206 |
35 -- 55 |
30S ribosomal subunit protein S8 |
|
_____________186____________________207\n_____________|______________________|\n5'-AGC...AUCAC______A_______________AUGCA...AAG-3'\n______________GGGAGU_AAGACAG_AU_GAGC\n______________||:|||_||||||:_||_||||\n______________CCUUCA_UUCUGUU_UA_CUCG\n3'-UUU...UUUUU______________A__C____CGUUG...ACG-5'\n_____________|______________________|\n_____________56_____________________34\n |
194 -- 200 |
43 -- 49 |
-20.142 kcal/mol |
3.78995 kcal/mol |
4.0932 kcal/mol |
186 207@LB@ | |@LB@5'-AGC...AUCAC A AUGCA...AAG-3'@LB@ GGGAGU AAGACAG AU GAGC@LB@ ||:||| ||||||: || ||||@LB@ CCUUCA UUCUGUU UA CUCG@LB@3'-UUU...UUUUU A C CGUUG...ACG-5'@LB@ | |@LB@ 56 34@LB@@LB@@LB@Energy -12.22 kcal/mol@LB@Hybridization Energy -20.142 kcal/mol@LB@Unfolding Energy - mRNA 3.78995 kcal/mol@LB@Unfolding Energy - sRNA 4.0932 kcal/mol@LB@@LB@Position - mRNA 187 -- 206@LB@Position - sRNA 35 -- 55@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 43 -- 49@LB@ |
24 |
0.0001125 |
0.01591 |
b3212 |
gltB |
-12.14 |
0.031409 |
27 -- 43 |
59 -- 75 |
glutamate synthase large subunit |
|
_____________26________________44\n_____________|_________________|\n5'-CUG...CAUAU_____________G___UCCCC...UAC-3'\n______________UUAUGCAGUAAUU_AGA\n______________:||||||||||||_|:|\n______________GAUACGUCAUUAA_UUU\n3'-UUU...AACAC_____________G___UUUCC...ACG-5'\n_____________|_________________|\n_____________76________________58\n |
33 -- 39 |
63 -- 69 |
-17.8824 kcal/mol |
2.24537 kcal/mol |
3.49177 kcal/mol |
26 44@LB@ | |@LB@5'-CUG...CAUAU G UCCCC...UAC-3'@LB@ UUAUGCAGUAAUU AGA@LB@ :|||||||||||| |:|@LB@ GAUACGUCAUUAA UUU@LB@3'-UUU...AACAC G UUUCC...ACG-5'@LB@ | |@LB@ 76 58@LB@@LB@@LB@Energy -12.14 kcal/mol@LB@Hybridization Energy -17.8824 kcal/mol@LB@Unfolding Energy - mRNA 2.24537 kcal/mol@LB@Unfolding Energy - sRNA 3.49177 kcal/mol@LB@@LB@Position - mRNA 27 -- 43@LB@Position - sRNA 59 -- 75@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 63 -- 69@LB@ |
105 |
0.003386 |
0.1114 |
b0517 |
allD |
-12.14 |
0.031589 |
151 -- 204 |
43 -- 92 |
ureidoglycolate dehydrogenase |
b0801 |
_____________150______________________________________________________205\n_____________|________________________________________________________|\n5'-AAA...UUCCC_______________CA__C____UUCACACCG___UU__________AC______AAAUC...UGG-3'\n______________UGUAUG__UUAAUUG__GU_AUGC_________UCG__AAAAAGGAAG__AGAUGA\n______________:|||:|__|:|||||__|:_||||_________||:__||||||||||__|||::|\n______________GCAUGC__AGUUAAC__CG_UACG_________AGU__UUUUUCCUUC__UCUGUU\n3'-UUU...CCGCA______UU_______A___A____UCAUUA__________________AU______AUACC...ACG-5'\n_____________|________________________________________________________|\n_____________93_______________________________________________________42\n |
190 -- 196 |
51 -- 57 |
-28.1957 kcal/mol |
10.2009 kcal/mol |
5.86211 kcal/mol |
150 205@LB@ | |@LB@5'-AAA...UUCCC CA C UUCACACCG UU AC AAAUC...UGG-3'@LB@ UGUAUG UUAAUUG GU AUGC UCG AAAAAGGAAG AGAUGA@LB@ :|||:| |:||||| |: |||| ||: |||||||||| |||::|@LB@ GCAUGC AGUUAAC CG UACG AGU UUUUUCCUUC UCUGUU@LB@3'-UUU...CCGCA UU A A UCAUUA AU AUACC...ACG-5'@LB@ | |@LB@ 93 42@LB@@LB@@LB@Energy -12.14 kcal/mol@LB@Hybridization Energy -28.1957 kcal/mol@LB@Unfolding Energy - mRNA 10.2009 kcal/mol@LB@Unfolding Energy - sRNA 5.86211 kcal/mol@LB@@LB@Position - mRNA 151 -- 204@LB@Position - sRNA 43 -- 92@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 51 -- 57@LB@ |
149 |
0.005854 |
0.1368 |
b2166 |
psuK |
-12.08 |
0.032688 |
265 -- 298 |
54 -- 89 |
pseudouridine kinase |
|
_____________264___________________________________299\n_____________|_____________________________________|\n5'-UUU...UUCAC________UUAAA__________________UCC___UA-3'\n______________AUGAAUCA______UUAUGCGG__AUUCAAA___AGG\n______________|:||||||______:|||||:|__|||||||___|||\n______________UGCUUAGU______GAUACGUC__UAAGUUU___UCC\n3'-UUU...CAGCA________UAACAC________AU_______UU____UUCAU...ACG-5'\n_____________|_____________________________________|\n_____________90____________________________________53\n |
279 -- 285 |
68 -- 74 |
-22.7366 kcal/mol |
5.9989 kcal/mol |
4.66068 kcal/mol |
264 299@LB@ | |@LB@5'-UUU...UUCAC UUAAA UCC UA-3'@LB@ AUGAAUCA UUAUGCGG AUUCAAA AGG@LB@ |:|||||| :|||||:| ||||||| |||@LB@ UGCUUAGU GAUACGUC UAAGUUU UCC@LB@3'-UUU...CAGCA UAACAC AU UU UUCAU...ACG-5'@LB@ | |@LB@ 90 53@LB@@LB@@LB@Energy -12.08 kcal/mol@LB@Hybridization Energy -22.7366 kcal/mol@LB@Unfolding Energy - mRNA 5.9989 kcal/mol@LB@Unfolding Energy - sRNA 4.66068 kcal/mol@LB@@LB@Position - mRNA 265 -- 298@LB@Position - sRNA 54 -- 89@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 68 -- 74@LB@ |
8 |
8.903e-06 |
0.003921 |
b1654 |
grxD |
-12.06 |
0.033180 |
187 -- 203 |
41 -- 57 |
glutaredoxin-4 |
|
_____________186_____________________204\n_____________|_______________________|\n5'-AAA...AGUUU_______C_______________ACCAC...CUG-3'\n______________GAGGAAG_AAGACAAU___GAGC\n______________:||||||_||||||||___||||\n______________UUCCUUC_UUCUGUUA___CUCG\n3'-UUU...GUUUU_______A________UAC____CGUUG...ACG-5'\n_____________|_______________________|\n_____________58______________________40\n |
196 -- 202 |
42 -- 48 |
-22.6133 kcal/mol |
5.89741 kcal/mol |
4.1846 kcal/mol |
186 204@LB@ | |@LB@5'-AAA...AGUUU C ACCAC...CUG-3'@LB@ GAGGAAG AAGACAAU GAGC@LB@ :|||||| |||||||| ||||@LB@ UUCCUUC UUCUGUUA CUCG@LB@3'-UUU...GUUUU A UAC CGUUG...ACG-5'@LB@ | |@LB@ 58 40@LB@@LB@@LB@Energy -12.06 kcal/mol@LB@Hybridization Energy -22.6133 kcal/mol@LB@Unfolding Energy - mRNA 5.89741 kcal/mol@LB@Unfolding Energy - sRNA 4.1846 kcal/mol@LB@@LB@Position - mRNA 187 -- 203@LB@Position - sRNA 41 -- 57@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 42 -- 48@LB@ |
138 |
0.00525 |
0.1336 |
b0031 |
dapB |
-12.01 |
0.034078 |
16 -- 66 |
61 -- 114 |
dihydrodipicolinate reductase |
|
_____________15____________________________________________________________67\n_____________|_____________________________________________________________|\n5'-GUG...GAGGU__________________________ACCU____CAUGUU_______________C_____UCGAC...UGG-3'\n______________GCUGGCUC________UGGCGUCGUA____GUCA______AUUG_GC_AUGCAGU_AUUCA\n______________||:|:|||________:|||||||||____:|||______||||_||_|||||||_|||||\n______________CGGCUGAG________GCCGCAGCAU____UAGU______UAAC_CG_UACGUCA_UAAGU\n___3'-UUUUUUUU________UAGUUUCA__________GCU_______________A__A_______U_____UUUUU...ACG-5'\n_____________|_____________________________________________________________|\n_____________115___________________________________________________________60\n |
54 -- 60 |
67 -- 73 |
-49.0979 kcal/mol |
18.4253 kcal/mol |
18.6631 kcal/mol |
15 67@LB@ | |@LB@5'-GUG...GAGGU ACCU CAUGUU C UCGAC...UGG-3'@LB@ GCUGGCUC UGGCGUCGUA GUCA AUUG GC AUGCAGU AUUCA@LB@ ||:|:||| :||||||||| :||| |||| || ||||||| |||||@LB@ CGGCUGAG GCCGCAGCAU UAGU UAAC CG UACGUCA UAAGU@LB@ 3'-UUUUUUUU UAGUUUCA GCU A A U UUUUU...ACG-5'@LB@ | |@LB@ 115 60@LB@@LB@@LB@Energy -12.01 kcal/mol@LB@Hybridization Energy -49.0979 kcal/mol@LB@Unfolding Energy - mRNA 18.4253 kcal/mol@LB@Unfolding Energy - sRNA 18.6631 kcal/mol@LB@@LB@Position - mRNA 16 -- 66@LB@Position - sRNA 61 -- 114@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 67 -- 73@LB@ |
44 |
0.0004181 |
0.03347 |
b3429 |
glgA |
-12.00 |
0.034422 |
173 -- 196 |
35 -- 55 |
glycogen synthase |
|
_____________172______________________197\n_____________|________________________|\n5'-GUA...GCUAC_____U_______UAAACA_____GAUAA...ACG-3'\n______________GGAAG_UAGGGCA______GGAGC\n______________|||||_||:|:||______|||||\n______________CCUUC_AUUCUGU______CCUCG\n3'-UUU...UUUUU_____________UAUA_______CGUUG...ACG-5'\n_____________|________________________|\n_____________56_______________________34\n |
179 -- 185 |
44 -- 50 |
-21.7083 kcal/mol |
5.57994 kcal/mol |
4.0932 kcal/mol |
172 197@LB@ | |@LB@5'-GUA...GCUAC U UAAACA GAUAA...ACG-3'@LB@ GGAAG UAGGGCA GGAGC@LB@ ||||| ||:|:|| |||||@LB@ CCUUC AUUCUGU CCUCG@LB@3'-UUU...UUUUU UAUA CGUUG...ACG-5'@LB@ | |@LB@ 56 34@LB@@LB@@LB@Energy -12.00 kcal/mol@LB@Hybridization Energy -21.7083 kcal/mol@LB@Unfolding Energy - mRNA 5.57994 kcal/mol@LB@Unfolding Energy - sRNA 4.0932 kcal/mol@LB@@LB@Position - mRNA 173 -- 196@LB@Position - sRNA 35 -- 55@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 44 -- 50@LB@ |
56 |
0.0007477 |
0.04704 |
b2777 |
queE |
-11.99 |
0.034574 |
197 -- 232 |
45 -- 77 |
7-carboxy-7-deazaguanine synthase; queosine biosynthesis |
|
_____________196___________________________________233\n_____________|_____________________________________|\n5'-AAU...GAGAA____________CC____UU__C_A__U__UCC____CCUGC...UUG-3'\n______________UGCUAUGCAGUA___CGA__AA_G_GA_GU___AGAC\n______________||||||||||||___|:|__||_|_||_||___||||\n______________ACGAUACGUCAU___GUU__UU_C_CU_CA___UCUG\n3'-UUU...UUAAC____________UAA___UU_______U__U______UUAUA...ACG-5'\n_____________|_____________________________________|\n_____________78____________________________________44\n |
202 -- 208 |
66 -- 72 |
-23.7263 kcal/mol |
6.13303 kcal/mol |
5.60521 kcal/mol |
196 233@LB@ | |@LB@5'-AAU...GAGAA CC UU C A U UCC CCUGC...UUG-3'@LB@ UGCUAUGCAGUA CGA AA G GA GU AGAC@LB@ |||||||||||| |:| || | || || ||||@LB@ ACGAUACGUCAU GUU UU C CU CA UCUG@LB@3'-UUU...UUAAC UAA UU U U UUAUA...ACG-5'@LB@ | |@LB@ 78 44@LB@@LB@@LB@Energy -11.99 kcal/mol@LB@Hybridization Energy -23.7263 kcal/mol@LB@Unfolding Energy - mRNA 6.13303 kcal/mol@LB@Unfolding Energy - sRNA 5.60521 kcal/mol@LB@@LB@Position - mRNA 197 -- 232@LB@Position - sRNA 45 -- 77@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 66 -- 72@LB@ |
195 |
0.008697 |
0.1548 |
b0192 |
nlpE |
-11.98 |
0.034903 |
167 -- 206 |
41 -- 78 |
lipoprotein involved with copper homeostasis and adhesion |
|
_____________166________________________________________207\n_____________|__________________________________________|\n5'-UCA...GCAAA____GCA_____CGGG___AA__________U__________AAAAA...CGC-3'\n______________GUGC___GCGGU____AAU__AAAGAAGGAA___GGAUGGUG\n______________||||___||:||____|||__|||:||||||___:||:::|:\n______________CACG___CGUCA____UUA__UUUUUUCCUU___UCUGUUAU\n3'-UUU...GUUAA____AUA____________AG__________CAU________ACCUC...ACG-5'\n_____________|__________________________________________|\n_____________79_________________________________________40\n |
200 -- 206 |
41 -- 47 |
-26.7874 kcal/mol |
9.04038 kcal/mol |
5.77415 kcal/mol |
166 207@LB@ | |@LB@5'-UCA...GCAAA GCA CGGG AA U AAAAA...CGC-3'@LB@ GUGC GCGGU AAU AAAGAAGGAA GGAUGGUG@LB@ |||| ||:|| ||| |||:|||||| :||:::|:@LB@ CACG CGUCA UUA UUUUUUCCUU UCUGUUAU@LB@3'-UUU...GUUAA AUA AG CAU ACCUC...ACG-5'@LB@ | |@LB@ 79 40@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -26.7874 kcal/mol@LB@Unfolding Energy - mRNA 9.04038 kcal/mol@LB@Unfolding Energy - sRNA 5.77415 kcal/mol@LB@@LB@Position - mRNA 167 -- 206@LB@Position - sRNA 41 -- 78@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 41 -- 47@LB@ |
3 |
7.57e-07 |
0.0008889 |
b1763 |
topB |
-11.97 |
0.035059 |
233 -- 258 |
1 -- 37 |
DNA topoisomerase III |
|
_____________232___________________________________259\n_____________|_____________________________________|\n5'-UCU...AGUCU_____________________________________CCAAA...GUA-3'\n______________GGCGC_GCG_CCAUUGCU_GAUGU________CCUGC\n______________:||||_:||_||||:|||_||:||________|||||\n______________UCGCG_UGC_GGUAGCGA_CUGCA________GGACG\n3'-UUU...AUACC_____U___G________A_____ACGUAAGU_____-5'\n_____________|____________________________________|\n_____________38___________________________________1\n |
242 -- 248 |
20 -- 26 |
-35.9728 kcal/mol |
8.72127 kcal/mol |
15.288 kcal/mol |
232 259@LB@ | |@LB@5'-UCU...AGUCU CCAAA...GUA-3'@LB@ GGCGC GCG CCAUUGCU GAUGU CCUGC@LB@ :|||| :|| ||||:||| ||:|| |||||@LB@ UCGCG UGC GGUAGCGA CUGCA GGACG@LB@3'-UUU...AUACC U G A ACGUAAGU -5'@LB@ | |@LB@ 38 1@LB@@LB@@LB@Energy -11.97 kcal/mol@LB@Hybridization Energy -35.9728 kcal/mol@LB@Unfolding Energy - mRNA 8.72127 kcal/mol@LB@Unfolding Energy - sRNA 15.288 kcal/mol@LB@@LB@Position - mRNA 233 -- 258@LB@Position - sRNA 1 -- 37@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 20 -- 26@LB@ |
160 |
0.006309 |
0.1377 |
b2602 |
yfiL |
-11.97 |
0.035037 |
175 -- 199 |
46 -- 76 |
lipoprotein |
|
_____________174_____________________________200\n_____________|_______________________________|\n5'-CCU...AAUCC__________________________A____AAUGA...GGU-3'\n______________GCUAUGC_____UUUGAAAAAGGA_G_AAGA\n______________|||||||_____||::||||||||_|_||||\n______________CGAUACG_____AAGUUUUUUCCU_C_UUCU\n3'-UUU...UAACA_______UCAUU____________U_A____GUUAU...ACG-5'\n_____________|_______________________________|\n_____________77______________________________45\n |
187 -- 193 |
53 -- 59 |
-23.3315 kcal/mol |
6.08708 kcal/mol |
5.27798 kcal/mol |
174 200@LB@ | |@LB@5'-CCU...AAUCC A AAUGA...GGU-3'@LB@ GCUAUGC UUUGAAAAAGGA G AAGA@LB@ ||||||| ||::|||||||| | ||||@LB@ CGAUACG AAGUUUUUUCCU C UUCU@LB@3'-UUU...UAACA UCAUU U A GUUAU...ACG-5'@LB@ | |@LB@ 77 45@LB@@LB@@LB@Energy -11.97 kcal/mol@LB@Hybridization Energy -23.3315 kcal/mol@LB@Unfolding Energy - mRNA 6.08708 kcal/mol@LB@Unfolding Energy - sRNA 5.27798 kcal/mol@LB@@LB@Position - mRNA 175 -- 199@LB@Position - sRNA 46 -- 76@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 53 -- 59@LB@ |
176 |
0.007245 |
0.145 |
b0397 |
sbcC |
-11.91 |
0.036282 |
117 -- 185 |
1 -- 55 |
exonuclease dsDNA ATP-dependent |
|
_____________116____________________________________________________________________186\n_____________|______________________________________________________________________|\n5'-GAA...GCACU_____AACU______AUCGC___A__________CA__AUCUUUUCACCAC__________A_____C__CGGAG...UUG-3'\n______________GGAAG____GGAUGA_____AGC_GCAACGUCUG__GC_____________GACGUUGCAU_C_CCU_GC\n______________|||||____:||::|_____|||_||||||:|::__||_____________||||||||||_|_|||_||\n______________CCUUC____UCUGUU_____UCG_CGUUGCGGGU__CG_____________CUGCAACGUA_G_GGA_CG\n3'-UUU...UUUUU_____AU________AUACC______________AG__AA_____________________A_U______-5'\n_____________|_____________________________________________________________________|\n_____________56____________________________________________________________________1\n |
170 -- 176 |
10 -- 16 |
-47.2501 kcal/mol |
18.5328 kcal/mol |
16.8092 kcal/mol |
116 186@LB@ | |@LB@5'-GAA...GCACU AACU AUCGC A CA AUCUUUUCACCAC A C CGGAG...UUG-3'@LB@ GGAAG GGAUGA AGC GCAACGUCUG GC GACGUUGCAU C CCU GC@LB@ ||||| :||::| ||| ||||||:|:: || |||||||||| | ||| ||@LB@ CCUUC UCUGUU UCG CGUUGCGGGU CG CUGCAACGUA G GGA CG@LB@3'-UUU...UUUUU AU AUACC AG AA A U -5'@LB@ | |@LB@ 56 1@LB@@LB@@LB@Energy -11.91 kcal/mol@LB@Hybridization Energy -47.2501 kcal/mol@LB@Unfolding Energy - mRNA 18.5328 kcal/mol@LB@Unfolding Energy - sRNA 16.8092 kcal/mol@LB@@LB@Position - mRNA 117 -- 185@LB@Position - sRNA 1 -- 55@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 10 -- 16@LB@ |
199 |
0.008927 |
0.1548 |
b1019 |
efeB |
-11.91 |
0.036296 |
188 -- 218 |
52 -- 88 |
deferrrochelatase periplasmic |
|
_____________187___________________________________219\n_____________|_____________________________________|\n5'-GCC...GGGAC________GC______________________U____AACGG...CUC-3'\n______________UGGAUUAA____GUUAUGCAGUA___UAAAGA__GAA\n______________:|:||:||____|:|||||||||___:|||:|__|||\n______________GCUUAGUU____CGAUACGUCAU___GUUUUU__CUU\n3'-UUU...AGCAU________AACA___________UAA______UC___CAUUC...ACG-5'\n_____________|_____________________________________|\n_____________89____________________________________51\n |
202 -- 208 |
66 -- 72 |
-22.4719 kcal/mol |
5.89402 kcal/mol |
4.66982 kcal/mol |
187 219@LB@ | |@LB@5'-GCC...GGGAC GC U AACGG...CUC-3'@LB@ UGGAUUAA GUUAUGCAGUA UAAAGA GAA@LB@ :|:||:|| |:||||||||| :|||:| |||@LB@ GCUUAGUU CGAUACGUCAU GUUUUU CUU@LB@3'-UUU...AGCAU AACA UAA UC CAUUC...ACG-5'@LB@ | |@LB@ 89 51@LB@@LB@@LB@Energy -11.91 kcal/mol@LB@Hybridization Energy -22.4719 kcal/mol@LB@Unfolding Energy - mRNA 5.89402 kcal/mol@LB@Unfolding Energy - sRNA 4.66982 kcal/mol@LB@@LB@Position - mRNA 188 -- 218@LB@Position - sRNA 52 -- 88@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 66 -- 72@LB@ |
153 |
0.00596 |
0.1368 |
b3892 |
fdoI |
-11.89 |
0.036676 |
181 -- 200 |
31 -- 53 |
formate dehydrogenase-O cytochrome b556 subunit |
|
_____________180_____________________201\n_____________|_______________________|\n5'-CCA...ACGAA___A___________________AUGAA...UGG-3'\n______________GAG_AAGACGA___GGAGCGCAA\n______________:||_|||||:|___|||||||||\n______________UUC_UUCUGUU___CCUCGCGUU\n3'-UUU...UUUCC___A_______AUA_________GCGGG...ACG-5'\n_____________|_______________________|\n_____________54______________________30\n |
194 -- 200 |
31 -- 37 |
-24.6235 kcal/mol |
2.95491 kcal/mol |
9.77014 kcal/mol |
180 201@LB@ | |@LB@5'-CCA...ACGAA A AUGAA...UGG-3'@LB@ GAG AAGACGA GGAGCGCAA@LB@ :|| |||||:| |||||||||@LB@ UUC UUCUGUU CCUCGCGUU@LB@3'-UUU...UUUCC A AUA GCGGG...ACG-5'@LB@ | |@LB@ 54 30@LB@@LB@@LB@Energy -11.89 kcal/mol@LB@Hybridization Energy -24.6235 kcal/mol@LB@Unfolding Energy - mRNA 2.95491 kcal/mol@LB@Unfolding Energy - sRNA 9.77014 kcal/mol@LB@@LB@Position - mRNA 181 -- 200@LB@Position - sRNA 31 -- 53@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 31 -- 37@LB@ |
163 |
0.006379 |
0.1377 |
b2210 |
mqo |
-11.85 |
0.037664 |
161 -- 168 |
1 -- 8 |
malate dehydrogenase FAD/NAD(P)-binding domain |
|
_____________160______169\n_____________|________|\n5'-GGC...AAAUC________AAUAA...AUG-3'\n______________UCACCUGC\n______________||||||||\n______________AGUGGACG\n3'-UUU...ACGUA________-5'\n_____________|_______|\n_____________9_______1\n |
162 -- 168 |
1 -- 7 |
-15.6271 kcal/mol |
1.41654 kcal/mol |
2.36381 kcal/mol |
160 169@LB@ | |@LB@5'-GGC...AAAUC AAUAA...AUG-3'@LB@ UCACCUGC@LB@ ||||||||@LB@ AGUGGACG@LB@3'-UUU...ACGUA -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -11.85 kcal/mol@LB@Hybridization Energy -15.6271 kcal/mol@LB@Unfolding Energy - mRNA 1.41654 kcal/mol@LB@Unfolding Energy - sRNA 2.36381 kcal/mol@LB@@LB@Position - mRNA 161 -- 168@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 1 -- 7@LB@ |
182 |
0.007798 |
0.1509 |
b3523 |
yhjE |
-11.78 |
0.039321 |
145 -- 165 |
64 -- 85 |
putative MFS transporter; membrane protein |
|
_____________144____________________166\n_____________|______________________|\n5'-AAC...GAAAU____C__U______________AUGGC...UUG-3'\n______________AUCA_UU_UGCUGUGC_GUAAU\n______________||||_||_||||:|||_|||||\n______________UAGU_AA_ACGAUACG_CAUUA\n3'-UUU...AUGCU____U__C________U_____AGUUU...ACG-5'\n_____________|______________________|\n_____________86_____________________63\n |
154 -- 160 |
70 -- 76 |
-18.5967 kcal/mol |
3.10692 kcal/mol |
3.70798 kcal/mol |
144 166@LB@ | |@LB@5'-AAC...GAAAU C U AUGGC...UUG-3'@LB@ AUCA UU UGCUGUGC GUAAU@LB@ |||| || ||||:||| |||||@LB@ UAGU AA ACGAUACG CAUUA@LB@3'-UUU...AUGCU U C U AGUUU...ACG-5'@LB@ | |@LB@ 86 63@LB@@LB@@LB@Energy -11.78 kcal/mol@LB@Hybridization Energy -18.5967 kcal/mol@LB@Unfolding Energy - mRNA 3.10692 kcal/mol@LB@Unfolding Energy - sRNA 3.70798 kcal/mol@LB@@LB@Position - mRNA 145 -- 165@LB@Position - sRNA 64 -- 85@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 70 -- 76@LB@ |
96 |
0.002937 |
0.1078 |
b1539 |
ydfG |
-11.63 |
0.043083 |
159 -- 205 |
42 -- 78 |
NADP-dependent 3-hydroxy acid dehydrogenase; malonic semialdehyde reductase |
|
_____________158_____________________________________________206\n_____________|_______________________________________________|\n5'-GAU...AUCCC_________UAUUGACACA_____GCGUU_____AC___________CGUUU...GCC-3'\n______________GUGCUAUGU__________CAAAA_____GAGGA__AGUGAGAUGAU\n______________||||||||:__________|||||_____:||||__|||:|||::||\n______________CACGAUACG__________GUUUU_____UUCCU__UCAUUCUGUUA\n3'-UUU...GUUAA_________UCAUUAA_______________________________UACCU...ACG-5'\n_____________|_______________________________________________|\n_____________79______________________________________________41\n |
199 -- 205 |
42 -- 48 |
-28.6775 kcal/mol |
11.4217 kcal/mol |
5.62659 kcal/mol |
158 206@LB@ | |@LB@5'-GAU...AUCCC UAUUGACACA GCGUU AC CGUUU...GCC-3'@LB@ GUGCUAUGU CAAAA GAGGA AGUGAGAUGAU@LB@ ||||||||: ||||| :|||| |||:|||::||@LB@ CACGAUACG GUUUU UUCCU UCAUUCUGUUA@LB@3'-UUU...GUUAA UCAUUAA UACCU...ACG-5'@LB@ | |@LB@ 79 41@LB@@LB@@LB@Energy -11.63 kcal/mol@LB@Hybridization Energy -28.6775 kcal/mol@LB@Unfolding Energy - mRNA 11.4217 kcal/mol@LB@Unfolding Energy - sRNA 5.62659 kcal/mol@LB@@LB@Position - mRNA 159 -- 205@LB@Position - sRNA 42 -- 78@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 42 -- 48@LB@ |
166 |
0.006486 |
0.1377 |
b0440 |
hupB |
-11.63 |
0.043010 |
149 -- 200 |
46 -- 93 |
HU DNA-binding transcriptional regulator beta subunit |
|
_____________148______________________________________________________201\n_____________|________________________________________________________|\n5'-CGC...CGCGU______CUUGAAG__U__________GAUAUA______AU__________AG____GUGAA...CUG-3'\n______________UCGUAC_______GA_UCAA__GUGC________AAUU__AAAGAGGAAG__AAGA\n______________||||||_______||_||||__||||________||||__|||:||||||__||||\n______________AGCAUG_______CU_AGUU__CACG________UUAA__UUUUUCCUUC__UUCU\n3'-UUU...GCCGC_______________U____AA____AUACGUCA____GU__________A_____GUUAU...ACG-5'\n_____________|________________________________________________________|\n_____________94_______________________________________________________45\n |
188 -- 194 |
51 -- 57 |
-29.0191 kcal/mol |
11.8112 kcal/mol |
5.57675 kcal/mol |
148 201@LB@ | |@LB@5'-CGC...CGCGU CUUGAAG U GAUAUA AU AG GUGAA...CUG-3'@LB@ UCGUAC GA UCAA GUGC AAUU AAAGAGGAAG AAGA@LB@ |||||| || |||| |||| |||| |||:|||||| ||||@LB@ AGCAUG CU AGUU CACG UUAA UUUUUCCUUC UUCU@LB@3'-UUU...GCCGC U AA AUACGUCA GU A GUUAU...ACG-5'@LB@ | |@LB@ 94 45@LB@@LB@@LB@Energy -11.63 kcal/mol@LB@Hybridization Energy -29.0191 kcal/mol@LB@Unfolding Energy - mRNA 11.8112 kcal/mol@LB@Unfolding Energy - sRNA 5.57675 kcal/mol@LB@@LB@Position - mRNA 149 -- 200@LB@Position - sRNA 46 -- 93@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 51 -- 57@LB@ |
57 |
0.0009345 |
0.05776 |
b3755 |
yieP |
-11.62 |
0.043293 |
183 -- 203 |
41 -- 61 |
putative transcriptional regulator |
|
_____________182____________________204\n_____________|______________________|\n5'-UUC...AAAAA___________A__________CCUUU...CCG-3'\n______________GAAAAAGGAAG_UAAG_UAAUG\n______________:||||||||||_||||_:|||:\n______________UUUUUUCCUUC_AUUC_GUUAU\n3'-UUU...UUAAG________________U_____ACCUC...ACG-5'\n_____________|______________________|\n_____________62_____________________40\n |
187 -- 193 |
51 -- 57 |
-16.3745 kcal/mol |
2.38082 kcal/mol |
2.36907 kcal/mol |
182 204@LB@ | |@LB@5'-UUC...AAAAA A CCUUU...CCG-3'@LB@ GAAAAAGGAAG UAAG UAAUG@LB@ :|||||||||| |||| :|||:@LB@ UUUUUUCCUUC AUUC GUUAU@LB@3'-UUU...UUAAG U ACCUC...ACG-5'@LB@ | |@LB@ 62 40@LB@@LB@@LB@Energy -11.62 kcal/mol@LB@Hybridization Energy -16.3745 kcal/mol@LB@Unfolding Energy - mRNA 2.38082 kcal/mol@LB@Unfolding Energy - sRNA 2.36907 kcal/mol@LB@@LB@Position - mRNA 183 -- 203@LB@Position - sRNA 41 -- 61@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 51 -- 57@LB@ |
189 |
0.008291 |
0.1545 |
b3882 |
yihU |
-11.60 |
0.044017 |
173 -- 244 |
4 -- 78 |
3-sulpholactaldehyde (SLA) reductase NADH-dependent; gamma-hydroxybutyrate dehydrogenase NADH-dependent |
b0509 b3125 |
_____________172________________________________________________________________________________245\n_____________|__________________________________________________________________________________|\n5'-CAC...AAAAA___ACAUAACU________________U______________C___AAUC__________G__UAG___AAA__G_______AAUGG...ACG-3'\n______________GUG________GU_AUUCAGGAGAGGG__________UAUGG_AGC____GCGUUUAUCG_UU___GAC___UG_GUUCGCC\n______________|||________||_|||||::|:|||:__________|||||_|||____:||:::||||_||___|||___||_:|||:||\n______________CAC________CA_UAAGUUUUUUCCU__________AUACC_UCG____UGCGGGUAGC_AA___CUG___AC_UAAGUGG\n3'-UUU...GUUAA___GAUACGU___U_____________UCAUUCUGUU_________CGU___________G________CA___G_______ACG-5'\n_____________|__________________________________________________________________________________|\n_____________79_________________________________________________________________________________3\n |
238 -- 244 |
4 -- 10 |
-50.248 kcal/mol |
17.9839 kcal/mol |
20.6724 kcal/mol |
172 245@LB@ | |@LB@5'-CAC...AAAAA ACAUAACU U C AAUC G UAG AAA G AAUGG...ACG-3'@LB@ GUG GU AUUCAGGAGAGGG UAUGG AGC GCGUUUAUCG UU GAC UG GUUCGCC@LB@ ||| || |||||::|:|||: ||||| ||| :||:::|||| || ||| || :|||:||@LB@ CAC CA UAAGUUUUUUCCU AUACC UCG UGCGGGUAGC AA CUG AC UAAGUGG@LB@3'-UUU...GUUAA GAUACGU U UCAUUCUGUU CGU G CA G ACG-5'@LB@ | |@LB@ 79 3@LB@@LB@@LB@Energy -11.60 kcal/mol@LB@Hybridization Energy -50.248 kcal/mol@LB@Unfolding Energy - mRNA 17.9839 kcal/mol@LB@Unfolding Energy - sRNA 20.6724 kcal/mol@LB@@LB@Position - mRNA 173 -- 244@LB@Position - sRNA 4 -- 78@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 4 -- 10@LB@ |
121 |
0.004137 |
0.1205 |
b0353 |
mhpT |
-11.58 |
0.044392 |
170 -- 179 |
1 -- 10 |
3-hydroxyphenylpropionic transporter |
|
_____________169________180\n_____________|__________|\n5'-CGG...UCGCG__________ACUCG...CGG-3'\n______________AUUCACCUGC\n______________||||||||||\n______________UAAGUGGACG\n3'-UUU...CAACG__________-5'\n_____________|_________|\n_____________11________1\n |
173 -- 179 |
1 -- 7 |
-16.6324 kcal/mol |
2.26547 kcal/mol |
2.7891 kcal/mol |
169 180@LB@ | |@LB@5'-CGG...UCGCG ACUCG...CGG-3'@LB@ AUUCACCUGC@LB@ ||||||||||@LB@ UAAGUGGACG@LB@3'-UUU...CAACG -5'@LB@ | |@LB@ 11 1@LB@@LB@@LB@Energy -11.58 kcal/mol@LB@Hybridization Energy -16.6324 kcal/mol@LB@Unfolding Energy - mRNA 2.26547 kcal/mol@LB@Unfolding Energy - sRNA 2.7891 kcal/mol@LB@@LB@Position - mRNA 170 -- 179@LB@Position - sRNA 1 -- 10@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 1 -- 7@LB@ |
116 |
0.003923 |
0.1189 |
b4515 |
cydX |
-11.57 |
0.044828 |
15 -- 31 |
37 -- 53 |
cytochrome d (bd-I) ubiquinol oxidase subunit X |
|
_____________14________________32\n_____________|_________________|\n5'-ACC...AACGC____CU___________AUGCA...GUC-3'\n______________AAGU__GACAAUGUGGG\n______________||||__||||||:|||:\n______________UUCA__CUGUUAUACCU\n3'-UUU...UUUCC____UU___________CGCGU...ACG-5'\n_____________|_________________|\n_____________54________________36\n |
25 -- 31 |
37 -- 43 |
-18.6761 kcal/mol |
3.6374 kcal/mol |
3.44536 kcal/mol |
14 32@LB@ | |@LB@5'-ACC...AACGC CU AUGCA...GUC-3'@LB@ AAGU GACAAUGUGGG@LB@ |||| ||||||:|||:@LB@ UUCA CUGUUAUACCU@LB@3'-UUU...UUUCC UU CGCGU...ACG-5'@LB@ | |@LB@ 54 36@LB@@LB@@LB@Energy -11.57 kcal/mol@LB@Hybridization Energy -18.6761 kcal/mol@LB@Unfolding Energy - mRNA 3.6374 kcal/mol@LB@Unfolding Energy - sRNA 3.44536 kcal/mol@LB@@LB@Position - mRNA 15 -- 31@LB@Position - sRNA 37 -- 53@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 37 -- 43@LB@ |
26 |
0.000123 |
0.01616 |
b3280 |
yrdB |
-11.55 |
0.045184 |
198 -- 244 |
43 -- 92 |
DUF1488 family protein |
|
_____________197__________________________________________________245\n_____________|____________________________________________________|\n5'-CCA...UUGUC__CG______________C__C____UUC_____C_____AG__________GAAUA...GCG-3'\n______________CG__UGAAUCAG____GC_AU_CAGU____CGGA_AGGGA__AGUGGGACGA\n______________||__:||||||:____||_||_||||____|::|_|:|||__|||::|||:|\n______________GC__GCUUAGUU____CG_UA_GUCA____GUUU_UUCCU__UCAUUCUGUU\n3'-UUU...CCGCA__AU________AACA__A__C____UUAA____U_________________AUACC...ACG-5'\n_____________|____________________________________________________|\n_____________93___________________________________________________42\n |
238 -- 244 |
43 -- 49 |
-31.3697 kcal/mol |
13.9577 kcal/mol |
5.86211 kcal/mol |
197 245@LB@ | |@LB@5'-CCA...UUGUC CG C C UUC C AG GAAUA...GCG-3'@LB@ CG UGAAUCAG GC AU CAGU CGGA AGGGA AGUGGGACGA@LB@ || :||||||: || || |||| |::| |:||| |||::|||:|@LB@ GC GCUUAGUU CG UA GUCA GUUU UUCCU UCAUUCUGUU@LB@3'-UUU...CCGCA AU AACA A C UUAA U AUACC...ACG-5'@LB@ | |@LB@ 93 42@LB@@LB@@LB@Energy -11.55 kcal/mol@LB@Hybridization Energy -31.3697 kcal/mol@LB@Unfolding Energy - mRNA 13.9577 kcal/mol@LB@Unfolding Energy - sRNA 5.86211 kcal/mol@LB@@LB@Position - mRNA 198 -- 244@LB@Position - sRNA 43 -- 92@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 43 -- 49@LB@ |
72 |
0.001523 |
0.07451 |
b2296 |
ackA |
-11.55 |
0.045253 |
141 -- 168 |
13 -- 36 |
acetate kinase A and propionate kinase 2 |
|
_____________140__________________________169\n_____________|____________________________|\n5'-AUU...AUCAU____U____U____G___CCC_______UUUUU...UAG-3'\n______________GCGC_ACGC_CUAU_GCU___UGACGUU\n______________||||_||||_|:||_|||___|||||||\n______________CGCG_UGCG_GGUA_CGA___ACUGCAA\n3'-UUU...UACCU____U_________G_____________CGUAA...ACG-5'\n_____________|____________________________|\n_____________37___________________________12\n |
162 -- 168 |
13 -- 19 |
-30.8127 kcal/mol |
7.01729 kcal/mol |
12.2493 kcal/mol |
140 169@LB@ | |@LB@5'-AUU...AUCAU U U G CCC UUUUU...UAG-3'@LB@ GCGC ACGC CUAU GCU UGACGUU@LB@ |||| |||| |:|| ||| |||||||@LB@ CGCG UGCG GGUA CGA ACUGCAA@LB@3'-UUU...UACCU U G CGUAA...ACG-5'@LB@ | |@LB@ 37 12@LB@@LB@@LB@Energy -11.55 kcal/mol@LB@Hybridization Energy -30.8127 kcal/mol@LB@Unfolding Energy - mRNA 7.01729 kcal/mol@LB@Unfolding Energy - sRNA 12.2493 kcal/mol@LB@@LB@Position - mRNA 141 -- 168@LB@Position - sRNA 13 -- 36@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 13 -- 19@LB@ |
85 |
0.002164 |
0.08969 |
b0910 |
cmk |
-11.54 |
0.045559 |
249 -- 300 |
1 -- 56 |
cytidylate kinase |
|
_____________248________________________________________________________300\n_____________|__________________________________________________________|\n5'-CCG...GUGCA_____________CCUU_________G______G__GGAA________AUGG_______-3'\n______________GGGA___AAGGCA_______GUGUAA_G_CUAU_GC____GCGUUGCA____CAUCUGC\n______________:|||___|||:||_______|:|:||_|_|:||_||____:|||||||____||:||||\n______________UCCU___UUCUGU_______CGCGUU_C_GGUA_CG____UGCAACGU____GUGGACG\n3'-UUU...UUUUU____UCA______UAUACCU______G_G____G__AAC_________AA_________-5'\n_____________|__________________________________________________________|\n_____________57_________________________________________________________1\n |
294 -- 300 |
1 -- 7 |
-44.7718 kcal/mol |
16.3932 kcal/mol |
16.8439 kcal/mol |
248 300@LB@ | |@LB@5'-CCG...GUGCA CCUU G G GGAA AUGG -3'@LB@ GGGA AAGGCA GUGUAA G CUAU GC GCGUUGCA CAUCUGC@LB@ :||| |||:|| |:|:|| | |:|| || :||||||| ||:||||@LB@ UCCU UUCUGU CGCGUU C GGUA CG UGCAACGU GUGGACG@LB@3'-UUU...UUUUU UCA UAUACCU G G G AAC AA -5'@LB@ | |@LB@ 57 1@LB@@LB@@LB@Energy -11.54 kcal/mol@LB@Hybridization Energy -44.7718 kcal/mol@LB@Unfolding Energy - mRNA 16.3932 kcal/mol@LB@Unfolding Energy - sRNA 16.8439 kcal/mol@LB@@LB@Position - mRNA 249 -- 300@LB@Position - sRNA 1 -- 56@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 1 -- 7@LB@ |
87 |
0.002406 |
0.09689 |
b3317 |
rplB |
-11.53 |
0.045926 |
6 -- 24 |
68 -- 86 |
50S ribosomal subunit protein L2 |
|
_____________5___________________25\n_____________|___________________|\n______5'-GCAGA______AGC__________AAACU...UGC-3'\n______________AAUCAA___UGCUGUGCAG\n______________||||||___||||:|||||\n______________UUAGUU___ACGAUACGUC\n3'-UUU...CAUGC______AAC__________AUUAA...ACG-5'\n_____________|___________________|\n_____________87__________________67\n |
18 -- 24 |
68 -- 74 |
-20.8348 kcal/mol |
5.62876 kcal/mol |
3.67996 kcal/mol |
5 25@LB@ | |@LB@ 5'-GCAGA AGC AAACU...UGC-3'@LB@ AAUCAA UGCUGUGCAG@LB@ |||||| ||||:|||||@LB@ UUAGUU ACGAUACGUC@LB@3'-UUU...CAUGC AAC AUUAA...ACG-5'@LB@ | |@LB@ 87 67@LB@@LB@@LB@Energy -11.53 kcal/mol@LB@Hybridization Energy -20.8348 kcal/mol@LB@Unfolding Energy - mRNA 5.62876 kcal/mol@LB@Unfolding Energy - sRNA 3.67996 kcal/mol@LB@@LB@Position - mRNA 6 -- 24@LB@Position - sRNA 68 -- 86@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 68 -- 74@LB@ |
200 |
0.008935 |
0.1548 |
b1427 |
rimL |
-11.51 |
0.046463 |
223 -- 252 |
68 -- 89 |
ribosomal-protein-L7/L12-serine acetyltransferase |
|
_____________222____________________________253\n_____________|______________________________|\n5'-GAU...AGUAA________C___AAUUACA_____U_____AAAAU...CCU-3'\n______________GCGAAUCA_UUG_______UGCUG_UGCAG\n______________:|||||||_|||_______||||:_|||||\n______________UGCUUAGU_AAC_______ACGAU_ACGUC\n3'-UUU...CAGCA________U_____________________AUUAA...ACG-5'\n_____________|______________________________|\n_____________90_____________________________67\n |
224 -- 230 |
82 -- 88 |
-23.0393 kcal/mol |
7.0303 kcal/mol |
4.506 kcal/mol |
222 253@LB@ | |@LB@5'-GAU...AGUAA C AAUUACA U AAAAU...CCU-3'@LB@ GCGAAUCA UUG UGCUG UGCAG@LB@ :||||||| ||| ||||: |||||@LB@ UGCUUAGU AAC ACGAU ACGUC@LB@3'-UUU...CAGCA U AUUAA...ACG-5'@LB@ | |@LB@ 90 67@LB@@LB@@LB@Energy -11.51 kcal/mol@LB@Hybridization Energy -23.0393 kcal/mol@LB@Unfolding Energy - mRNA 7.0303 kcal/mol@LB@Unfolding Energy - sRNA 4.506 kcal/mol@LB@@LB@Position - mRNA 223 -- 252@LB@Position - sRNA 68 -- 89@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 82 -- 88@LB@ |
136 |
0.005087 |
0.1318 |
b3057 |
bacA |
-11.47 |
0.047548 |
153 -- 174 |
49 -- 71 |
undecaprenyl pyrophosphate phosphatase |
|
_____________152_____________________175\n_____________|_______________________|\n5'-UUC...CAUAC_____________C___C_____CAUUU...UUG-3'\n______________GCAGUAGUUCGGA_AAG__GGUA\n______________||||||:|||::|_|||__:|||\n______________CGUCAUUAAGUUU_UUC__UCAU\n3'-UUU...CGAUA_____________U___CU____UCUGU...ACG-5'\n_____________|_______________________|\n_____________72______________________48\n |
156 -- 162 |
62 -- 68 |
-21.4579 kcal/mol |
5.97 kcal/mol |
4.02052 kcal/mol |
152 175@LB@ | |@LB@5'-UUC...CAUAC C C CAUUU...UUG-3'@LB@ GCAGUAGUUCGGA AAG GGUA@LB@ ||||||:|||::| ||| :|||@LB@ CGUCAUUAAGUUU UUC UCAU@LB@3'-UUU...CGAUA U CU UCUGU...ACG-5'@LB@ | |@LB@ 72 48@LB@@LB@@LB@Energy -11.47 kcal/mol@LB@Hybridization Energy -21.4579 kcal/mol@LB@Unfolding Energy - mRNA 5.97 kcal/mol@LB@Unfolding Energy - sRNA 4.02052 kcal/mol@LB@@LB@Position - mRNA 153 -- 174@LB@Position - sRNA 49 -- 71@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 62 -- 68@LB@ |
9 |
1.504e-05 |
0.005627 |
b1189 |
dadA |
-11.44 |
0.048458 |
195 -- 226 |
48 -- 78 |
D-amino acid dehydrogenase |
|
_____________194_______________________________227\n_____________|_________________________________|\n5'-CCG...UCGGA__G_______G___UG____UACU_________UGUGG...CGG-3'\n______________GU_GCUAUGC_AGU___UCA____GGGAAGUGG\n______________||_|||||||_|||___|||____:||||||::\n______________CA_CGAUACG_UCA___AGU____UCCUUCAUU\n3'-UUU...GUUAA______________UUA___UUUU_________CUGUU...ACG-5'\n_____________|_________________________________|\n_____________79________________________________47\n |
220 -- 226 |
48 -- 54 |
-26.7579 kcal/mol |
10.7545 kcal/mol |
4.57065 kcal/mol |
194 227@LB@ | |@LB@5'-CCG...UCGGA G G UG UACU UGUGG...CGG-3'@LB@ GU GCUAUGC AGU UCA GGGAAGUGG@LB@ || ||||||| ||| ||| :||||||::@LB@ CA CGAUACG UCA AGU UCCUUCAUU@LB@3'-UUU...GUUAA UUA UUUU CUGUU...ACG-5'@LB@ | |@LB@ 79 47@LB@@LB@@LB@Energy -11.44 kcal/mol@LB@Hybridization Energy -26.7579 kcal/mol@LB@Unfolding Energy - mRNA 10.7545 kcal/mol@LB@Unfolding Energy - sRNA 4.57065 kcal/mol@LB@@LB@Position - mRNA 195 -- 226@LB@Position - sRNA 48 -- 78@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 48 -- 54@LB@ |
52 |
0.0006076 |
0.04117 |
b1119 |
nagK |
-11.33 |
0.051615 |
175 -- 204 |
40 -- 71 |
N-acetyl-D-glucosamine kinase |
|
_____________174_______________________________205\n_____________|_________________________________|\n5'-UCA...UAAAG______CA______C______C___________AUUAC...GUG-3'\n______________GCAGUA__UUAAAA_AAGGAG____GGCAAUGU\n______________||||||__|:||||_|||||:____|:||||:|\n______________CGUCAU__AGUUUU_UUCCUU____CUGUUAUA\n3'-UUU...CGAUA______UA_____________CAUU________CCUCG...ACG-5'\n_____________|_________________________________|\n_____________72________________________________39\n |
197 -- 203 |
41 -- 47 |
-22.8361 kcal/mol |
5.88825 kcal/mol |
5.61718 kcal/mol |
174 205@LB@ | |@LB@5'-UCA...UAAAG CA C C AUUAC...GUG-3'@LB@ GCAGUA UUAAAA AAGGAG GGCAAUGU@LB@ |||||| |:|||| |||||: |:||||:|@LB@ CGUCAU AGUUUU UUCCUU CUGUUAUA@LB@3'-UUU...CGAUA UA CAUU CCUCG...ACG-5'@LB@ | |@LB@ 72 39@LB@@LB@@LB@Energy -11.33 kcal/mol@LB@Hybridization Energy -22.8361 kcal/mol@LB@Unfolding Energy - mRNA 5.88825 kcal/mol@LB@Unfolding Energy - sRNA 5.61718 kcal/mol@LB@@LB@Position - mRNA 175 -- 204@LB@Position - sRNA 40 -- 71@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 41 -- 47@LB@ |
110 |
0.003505 |
0.1114 |
b4111 |
proP |
-11.30 |
0.052648 |
186 -- 222 |
48 -- 93 |
proline/glycine betaine transporter |
|
_____________185________________________________________________223\n_____________|__________________________________________________|\n5'-CAC...CCAAC_________GA_____________U________________AAAA_____AACCG...GUA-3'\n______________UC_UGCGAG__AA____GCUAUGC_________GAAAAGGA____AGUAA\n______________||_|:|||:__||____|||||||_________:|||||||____|||||\n______________AG_AUGCUU__UU____CGAUACG_________UUUUUCCU____UCAUU\n3'-UUU...GCCGC__C______AG__AACA_______UCAUUAAGU_________________CUGUU...ACG-5'\n_____________|__________________________________________________|\n_____________94_________________________________________________47\n |
198 -- 204 |
70 -- 76 |
-22.6159 kcal/mol |
6.45165 kcal/mol |
4.87071 kcal/mol |
185 223@LB@ | |@LB@5'-CAC...CCAAC GA U AAAA AACCG...GUA-3'@LB@ UC UGCGAG AA GCUAUGC GAAAAGGA AGUAA@LB@ || |:|||: || ||||||| :||||||| |||||@LB@ AG AUGCUU UU CGAUACG UUUUUCCU UCAUU@LB@3'-UUU...GCCGC C AG AACA UCAUUAAGU CUGUU...ACG-5'@LB@ | |@LB@ 94 47@LB@@LB@@LB@Energy -11.30 kcal/mol@LB@Hybridization Energy -22.6159 kcal/mol@LB@Unfolding Energy - mRNA 6.45165 kcal/mol@LB@Unfolding Energy - sRNA 4.87071 kcal/mol@LB@@LB@Position - mRNA 186 -- 222@LB@Position - sRNA 48 -- 93@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 70 -- 76@LB@ |
159 |
0.006259 |
0.1377 |
b2194 |
ccmH |
-11.29 |
0.052751 |
252 -- 296 |
43 -- 89 |
heme lyase CcmH subunit |
|
_____________251__________________________________________________297\n_____________|____________________________________________________|\n5'-CUG...CGCUG____CC_____________________________U_____CAC___A____CAGU-3'\n______________GCGA__AUCGA_UGUGUUG__CAGU___UUAAAGA__GAAG___AGG_ACAA\n______________:|||__|||:|_||||:|:__||||___|:|||:|__||||___|:|_||||\n______________UGCU__UAGUU_ACACGAU__GUCA___AGUUUUU__CUUC___UUC_UGUU\n3'-UUU...CAGCA___________A_______AC____UUA_______UC____A__________AUACC...ACG-5'\n_____________|____________________________________________________|\n_____________90___________________________________________________42\n |
263 -- 269 |
73 -- 79 |
-25.337 kcal/mol |
8.31324 kcal/mol |
5.7326 kcal/mol |
251 297@LB@ | |@LB@5'-CUG...CGCUG CC U CAC A CAGU-3'@LB@ GCGA AUCGA UGUGUUG CAGU UUAAAGA GAAG AGG ACAA@LB@ :||| |||:| ||||:|: |||| |:|||:| |||| |:| ||||@LB@ UGCU UAGUU ACACGAU GUCA AGUUUUU CUUC UUC UGUU@LB@3'-UUU...CAGCA A AC UUA UC A AUACC...ACG-5'@LB@ | |@LB@ 90 42@LB@@LB@@LB@Energy -11.29 kcal/mol@LB@Hybridization Energy -25.337 kcal/mol@LB@Unfolding Energy - mRNA 8.31324 kcal/mol@LB@Unfolding Energy - sRNA 5.7326 kcal/mol@LB@@LB@Position - mRNA 252 -- 296@LB@Position - sRNA 43 -- 89@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 73 -- 79@LB@ |
94 |
0.002802 |
0.105 |
b2905 |
gcvT |
-11.27 |
0.053451 |
219 -- 244 |
68 -- 93 |
aminomethyltransferase tetrahydrofolate-dependent subunit (T protein) of glycine cleavage complex |
|
_____________218_________________________245\n_____________|___________________________|\n5'-CUG...CUCCU_____________CACAC___U_____CGCUC...AAA-3'\n______________UUGUACGAA_CAA_____GCU_UGCGG\n______________|:|||||||_|||_____|||_|||:|\n______________AGCAUGCUU_GUU_____CGA_ACGUC\n3'-UUU...GCCGC_________A___AACA____U_____AUUAA...ACG-5'\n_____________|___________________________|\n_____________94__________________________67\n |
221 -- 227 |
85 -- 91 |
-21.376 kcal/mol |
5.42013 kcal/mol |
4.68758 kcal/mol |
218 245@LB@ | |@LB@5'-CUG...CUCCU CACAC U CGCUC...AAA-3'@LB@ UUGUACGAA CAA GCU UGCGG@LB@ |:||||||| ||| ||| |||:|@LB@ AGCAUGCUU GUU CGA ACGUC@LB@3'-UUU...GCCGC A AACA U AUUAA...ACG-5'@LB@ | |@LB@ 94 67@LB@@LB@@LB@Energy -11.27 kcal/mol@LB@Hybridization Energy -21.376 kcal/mol@LB@Unfolding Energy - mRNA 5.42013 kcal/mol@LB@Unfolding Energy - sRNA 4.68758 kcal/mol@LB@@LB@Position - mRNA 219 -- 244@LB@Position - sRNA 68 -- 93@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 85 -- 91@LB@ |
164 |
0.006461 |
0.1377 |
b0864 |
artP |
-11.21 |
0.055481 |
74 -- 84 |
70 -- 80 |
arginine ABC transporter ATPase |
|
_____________73__________85\n_____________|___________|\n5'-AAA...UUAUU___________UUAUU...UAC-3'\n______________UUGUGCUAUGU\n______________||||||||||:\n______________AACACGAUACG\n3'-UUU...UAGUU___________UCAUU...ACG-5'\n_____________|___________|\n_____________81__________69\n |
78 -- 84 |
70 -- 76 |
-15.8897 kcal/mol |
2.86206 kcal/mol |
1.81863 kcal/mol |
73 85@LB@ | |@LB@5'-AAA...UUAUU UUAUU...UAC-3'@LB@ UUGUGCUAUGU@LB@ ||||||||||:@LB@ AACACGAUACG@LB@3'-UUU...UAGUU UCAUU...ACG-5'@LB@ | |@LB@ 81 69@LB@@LB@@LB@Energy -11.21 kcal/mol@LB@Hybridization Energy -15.8897 kcal/mol@LB@Unfolding Energy - mRNA 2.86206 kcal/mol@LB@Unfolding Energy - sRNA 1.81863 kcal/mol@LB@@LB@Position - mRNA 74 -- 84@LB@Position - sRNA 70 -- 80@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 70 -- 76@LB@ |
169 |
0.006778 |
0.1407 |
b3300 |
secY |
-11.17 |
0.056917 |
151 -- 190 |
56 -- 93 |
preprotein translocase membrane subunit |
|
_____________150_______________________________________191\n_____________|_________________________________________|\n5'-CCU...GGCGC______UGCU_____AGC_____________AA________UAAGU...UCC-3'\n______________UCGUGC____AUCGA___UGCUG_GCGGUAA__UCGAGGAA\n______________||||:|____|||:|___||||:_||:||||__||:|::||\n______________AGCAUG____UAGUU___ACGAU_CGUCAUU__AGUUUUUU\n3'-UUU...GCCGC______CU_______AAC_____A_______A_________CCUUC...ACG-5'\n_____________|_________________________________________|\n_____________94________________________________________55\n |
174 -- 180 |
65 -- 71 |
-28.5007 kcal/mol |
12.5083 kcal/mol |
4.83069 kcal/mol |
150 191@LB@ | |@LB@5'-CCU...GGCGC UGCU AGC AA UAAGU...UCC-3'@LB@ UCGUGC AUCGA UGCUG GCGGUAA UCGAGGAA@LB@ ||||:| |||:| ||||: ||:|||| ||:|::||@LB@ AGCAUG UAGUU ACGAU CGUCAUU AGUUUUUU@LB@3'-UUU...GCCGC CU AAC A A CCUUC...ACG-5'@LB@ | |@LB@ 94 55@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -28.5007 kcal/mol@LB@Unfolding Energy - mRNA 12.5083 kcal/mol@LB@Unfolding Energy - sRNA 4.83069 kcal/mol@LB@@LB@Position - mRNA 151 -- 190@LB@Position - sRNA 56 -- 93@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 65 -- 71@LB@ |
184 |
0.008005 |
0.1528 |
b3209 |
elbB |
-11.15 |
0.057587 |
162 -- 192 |
53 -- 86 |
isoprenoid biosynthesis protein with amidotransferase-like domain |
|
_____________161_________________________________193\n_____________|___________________________________|\n5'-GCG...AAAAA_____________U______C____GC________UGAUC...GUG-3'\n______________AAUUAA_UGUGUU___CAGU_AAUU___GAAAGGA\n______________|||:||_||||:|___||||_||||___:||||||\n______________UUAGUU_ACACGA___GUCA_UUAA___UUUUCCU\n3'-UUU...CAUGC______A______UAC_________GUU_______UCAUU...ACG-5'\n_____________|___________________________________|\n_____________87__________________________________52\n |
186 -- 192 |
53 -- 59 |
-19.5143 kcal/mol |
4.60736 kcal/mol |
3.76074 kcal/mol |
161 193@LB@ | |@LB@5'-GCG...AAAAA U C GC UGAUC...GUG-3'@LB@ AAUUAA UGUGUU CAGU AAUU GAAAGGA@LB@ |||:|| ||||:| |||| |||| :||||||@LB@ UUAGUU ACACGA GUCA UUAA UUUUCCU@LB@3'-UUU...CAUGC A UAC GUU UCAUU...ACG-5'@LB@ | |@LB@ 87 52@LB@@LB@@LB@Energy -11.15 kcal/mol@LB@Hybridization Energy -19.5143 kcal/mol@LB@Unfolding Energy - mRNA 4.60736 kcal/mol@LB@Unfolding Energy - sRNA 3.76074 kcal/mol@LB@@LB@Position - mRNA 162 -- 192@LB@Position - sRNA 53 -- 86@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 53 -- 59@LB@ |
111 |
0.003511 |
0.1114 |
b0077 |
ilvI |
-11.05 |
0.061087 |
188 -- 206 |
36 -- 52 |
acetolactate synthase 3 large subunit |
|
_____________187_________________207\n_____________|___________________|\n5'-AAA...CAAAC__________GCC______AUGUU...UUU-3'\n______________AGUGAGGCAG___AUGGAG\n______________|||:||:||:___||||||\n______________UCAUUCUGUU___UACCUC\n3'-UUU...UUCCU__________A________GCGUU...ACG-5'\n_____________|___________________|\n_____________53__________________35\n |
191 -- 197 |
43 -- 49 |
-19.2253 kcal/mol |
4.72052 kcal/mol |
3.43382 kcal/mol |
187 207@LB@ | |@LB@5'-AAA...CAAAC GCC AUGUU...UUU-3'@LB@ AGUGAGGCAG AUGGAG@LB@ |||:||:||: ||||||@LB@ UCAUUCUGUU UACCUC@LB@3'-UUU...UUCCU A GCGUU...ACG-5'@LB@ | |@LB@ 53 35@LB@@LB@@LB@Energy -11.05 kcal/mol@LB@Hybridization Energy -19.2253 kcal/mol@LB@Unfolding Energy - mRNA 4.72052 kcal/mol@LB@Unfolding Energy - sRNA 3.43382 kcal/mol@LB@@LB@Position - mRNA 188 -- 206@LB@Position - sRNA 36 -- 52@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 43 -- 49@LB@ |
77 |
0.00185 |
0.08273 |
b2325 |
yfcL |
-11.04 |
0.061434 |
190 -- 213 |
35 -- 57 |
uncharacterized protein |
|
_____________189______________________214\n_____________|________________________|\n5'-AAC...ACAAU______AG________CGC_____UUGAA...GCC-3'\n______________GAGGAA__AAGAUGAU___GGAGU\n______________:|||||__||||::||___||||:\n______________UUCCUU__UUCUGUUA___CCUCG\n3'-UUU...GUUUU______CA________UA______CGUUG...ACG-5'\n_____________|________________________|\n_____________58_______________________34\n |
199 -- 205 |
42 -- 48 |
-19.5886 kcal/mol |
4.3321 kcal/mol |
4.1846 kcal/mol |
189 214@LB@ | |@LB@5'-AAC...ACAAU AG CGC UUGAA...GCC-3'@LB@ GAGGAA AAGAUGAU GGAGU@LB@ :||||| ||||::|| ||||:@LB@ UUCCUU UUCUGUUA CCUCG@LB@3'-UUU...GUUUU CA UA CGUUG...ACG-5'@LB@ | |@LB@ 58 34@LB@@LB@@LB@Energy -11.04 kcal/mol@LB@Hybridization Energy -19.5886 kcal/mol@LB@Unfolding Energy - mRNA 4.3321 kcal/mol@LB@Unfolding Energy - sRNA 4.1846 kcal/mol@LB@@LB@Position - mRNA 190 -- 213@LB@Position - sRNA 35 -- 57@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 42 -- 48@LB@ |
171 |
0.006844 |
0.141 |
b4537 |
yecJ |
-11.04 |
0.061373 |
25 -- 77 |
39 -- 91 |
DUF2766 family protein |
|
_____________24_______________________________________________________78\n_____________|________________________________________________________|\n5'-UGA...GAAAA_____U______AA_____U___A__AC_________CGUACCGCC__________UUCCG...CGC-3'\n______________GUAUG__UCAAU____CUA_UGC_AG__GUUCAAAGA_________AGGCAAUAUG\n______________|||:|__|||||____|||_|||_||__:||||||:|_________||:|||||||\n______________CAUGC__AGUUA____GAU_ACG_UC__UAAGUUUUU_________UCUGUUAUAC\n3'-UUU...CGCAG_____UU_____ACAC__________AU_________UCCUUCAU___________CUCGC...ACG-5'\n_____________|________________________________________________________|\n_____________92_______________________________________________________38\n |
71 -- 77 |
39 -- 45 |
-28.4449 kcal/mol |
10.572 kcal/mol |
6.83352 kcal/mol |
24 78@LB@ | |@LB@5'-UGA...GAAAA U AA U A AC CGUACCGCC UUCCG...CGC-3'@LB@ GUAUG UCAAU CUA UGC AG GUUCAAAGA AGGCAAUAUG@LB@ |||:| ||||| ||| ||| || :||||||:| ||:|||||||@LB@ CAUGC AGUUA GAU ACG UC UAAGUUUUU UCUGUUAUAC@LB@3'-UUU...CGCAG UU ACAC AU UCCUUCAU CUCGC...ACG-5'@LB@ | |@LB@ 92 38@LB@@LB@@LB@Energy -11.04 kcal/mol@LB@Hybridization Energy -28.4449 kcal/mol@LB@Unfolding Energy - mRNA 10.572 kcal/mol@LB@Unfolding Energy - sRNA 6.83352 kcal/mol@LB@@LB@Position - mRNA 25 -- 77@LB@Position - sRNA 39 -- 91@LB@Position Seed - mRNA 71 -- 77@LB@Position Seed - sRNA 39 -- 45@LB@ |
126 |
0.004539 |
0.1258 |
b0546 |
ybcM |
-11.00 |
0.062763 |
188 -- 220 |
45 -- 91 |
DLP12 prophage; putative DNA-binding transcriptional regulator |
b1499 b0564 b3515 b4116 b0566 b3516 |
_____________187_____________________________________________221\n_____________|_______________________________________________|\n5'-GCU...AUAAA___G__UGA__GUA_________A_______________________UAACU...GUC-3'\n______________GUA_GG___GA___UGCUG_GCA______________GAGGUAAGAC\n______________|||_|:___:|___||||:_|||______________||:|||||||\n______________CAU_CU___UU___ACGAU_CGU______________CUUCAUUCUG\n3'-UUU...CGCAG___G__UAG__AAC_____A___CAUUAAGUUUUUUC__________UUAUA...ACG-5'\n_____________|_______________________________________________|\n_____________92______________________________________________44\n |
214 -- 220 |
45 -- 51 |
-23.4531 kcal/mol |
6.72952 kcal/mol |
5.72765 kcal/mol |
187 221@LB@ | |@LB@5'-GCU...AUAAA G UGA GUA A UAACU...GUC-3'@LB@ GUA GG GA UGCUG GCA GAGGUAAGAC@LB@ ||| |: :| ||||: ||| ||:|||||||@LB@ CAU CU UU ACGAU CGU CUUCAUUCUG@LB@3'-UUU...CGCAG G UAG AAC A CAUUAAGUUUUUUC UUAUA...ACG-5'@LB@ | |@LB@ 92 44@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -23.4531 kcal/mol@LB@Unfolding Energy - mRNA 6.72952 kcal/mol@LB@Unfolding Energy - sRNA 5.72765 kcal/mol@LB@@LB@Position - mRNA 188 -- 220@LB@Position - sRNA 45 -- 91@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 45 -- 51@LB@ |
89 |
0.002455 |
0.09689 |
b0466 |
ybaM |
-10.99 |
0.063193 |
248 -- 263 |
68 -- 82 |
DUF2496 family protein |
|
_____________247______________264\n_____________|________________|\n5'-GCA...GAUUU__________C__G__GAAAA...CGC-3'\n______________GAUUGUGCUG_UG_AG\n______________:||||||||:_||_||\n______________UUAACACGAU_AC_UC\n3'-UUU...CUUAG_____________G__AUUAA...ACG-5'\n_____________|________________|\n_____________83_______________67\n |
251 -- 257 |
73 -- 79 |
-16.1643 kcal/mol |
2.45269 kcal/mol |
2.72435 kcal/mol |
247 264@LB@ | |@LB@5'-GCA...GAUUU C G GAAAA...CGC-3'@LB@ GAUUGUGCUG UG AG@LB@ :||||||||: || ||@LB@ UUAACACGAU AC UC@LB@3'-UUU...CUUAG G AUUAA...ACG-5'@LB@ | |@LB@ 83 67@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -16.1643 kcal/mol@LB@Unfolding Energy - mRNA 2.45269 kcal/mol@LB@Unfolding Energy - sRNA 2.72435 kcal/mol@LB@@LB@Position - mRNA 248 -- 263@LB@Position - sRNA 68 -- 82@LB@Position Seed - mRNA 251 -- 257@LB@Position Seed - sRNA 73 -- 79@LB@ |
142 |
0.005444 |
0.1351 |
b3950 |
frwB |
-10.99 |
0.063119 |
13 -- 50 |
47 -- 86 |
putative enzyme IIB component of PTS |
b3899 |
_____________12__________________________________________51\n_____________|___________________________________________|\n5'-GCA...GGGGU____U__________C__________________C___C____UUAUA...GGG-3'\n______________GGUC_GAUUGUGCUG__CGGUGGUU____GAAGG_AAG_UGGG\n______________::||_:||||||||:__|:||::||____:||||_|||_|::|\n______________UUAG_UUAACACGAU__GUCAUUAA____UUUCC_UUC_AUUC\n3'-UUU...CAUGC_______________AC________GUUU______________UGUUA...ACG-5'\n_____________|___________________________________________|\n_____________87__________________________________________46\n |
30 -- 36 |
63 -- 69 |
-27.1662 kcal/mol |
11.4404 kcal/mol |
4.74035 kcal/mol |
12 51@LB@ | |@LB@5'-GCA...GGGGU U C C C UUAUA...GGG-3'@LB@ GGUC GAUUGUGCUG CGGUGGUU GAAGG AAG UGGG@LB@ ::|| :||||||||: |:||::|| :|||| ||| |::|@LB@ UUAG UUAACACGAU GUCAUUAA UUUCC UUC AUUC@LB@3'-UUU...CAUGC AC GUUU UGUUA...ACG-5'@LB@ | |@LB@ 87 46@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -27.1662 kcal/mol@LB@Unfolding Energy - mRNA 11.4404 kcal/mol@LB@Unfolding Energy - sRNA 4.74035 kcal/mol@LB@@LB@Position - mRNA 13 -- 50@LB@Position - sRNA 47 -- 86@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 63 -- 69@LB@ |
173 |
0.007186 |
0.145 |
b3554 |
yiaF |
-10.99 |
0.063148 |
166 -- 198 |
46 -- 94 |
barrier effect co-colonization resistance factor; DUF3053 family lipoprotein |
|
_____________165_______________________________________________199\n_____________|_________________________________________________|\n5'-AAU...GUGUC________CU__UU___G_______________________________AAAUG...AGC-3'\n______________GUUGUGCG__UU__UUG_GU_______________GAAAGG_AGUAAGA\n______________||:||:||__|:__|||_|:_______________:|||||_|||||||\n______________CAGCAUGC__AG__AAC_CG_______________UUUUCC_UCAUUCU\n3'-UUU...AGCCG________UU__UU___A__AUACGUCAUUAAGUU______U_______GUUAU...ACG-5'\n_____________|_________________________________________________|\n_____________95________________________________________________45\n |
192 -- 198 |
46 -- 52 |
-24.2986 kcal/mol |
7.73667 kcal/mol |
5.5768 kcal/mol |
165 199@LB@ | |@LB@5'-AAU...GUGUC CU UU G AAAUG...AGC-3'@LB@ GUUGUGCG UU UUG GU GAAAGG AGUAAGA@LB@ ||:||:|| |: ||| |: :||||| |||||||@LB@ CAGCAUGC AG AAC CG UUUUCC UCAUUCU@LB@3'-UUU...AGCCG UU UU A AUACGUCAUUAAGUU U GUUAU...ACG-5'@LB@ | |@LB@ 95 45@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -24.2986 kcal/mol@LB@Unfolding Energy - mRNA 7.73667 kcal/mol@LB@Unfolding Energy - sRNA 5.5768 kcal/mol@LB@@LB@Position - mRNA 166 -- 198@LB@Position - sRNA 46 -- 94@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 46 -- 52@LB@ |
101 |
0.003313 |
0.1114 |
b1193 |
emtA |
-10.98 |
0.063602 |
227 -- 257 |
55 -- 82 |
lytic murein endotransglycosylase E |
|
_____________226_____________________________258\n_____________|_______________________________|\n5'-UUG...UUUUU___________UA____GUU_____UC____CAUGA...UGC-3'\n______________GAUUGUGUUAU__GCGG___GUUCA__AAAG\n______________:||||||:|||__||:|___:||||__||||\n______________UUAACACGAUA__CGUC___UAAGU__UUUC\n3'-UUU...CUUAG_________________AU______UU____CUUCA...ACG-5'\n_____________|_______________________________|\n_____________83______________________________54\n |
231 -- 237 |
72 -- 78 |
-21.9468 kcal/mol |
7.33111 kcal/mol |
3.63929 kcal/mol |
226 258@LB@ | |@LB@5'-UUG...UUUUU UA GUU UC CAUGA...UGC-3'@LB@ GAUUGUGUUAU GCGG GUUCA AAAG@LB@ :||||||:||| ||:| :|||| ||||@LB@ UUAACACGAUA CGUC UAAGU UUUC@LB@3'-UUU...CUUAG AU UU CUUCA...ACG-5'@LB@ | |@LB@ 83 54@LB@@LB@@LB@Energy -10.98 kcal/mol@LB@Hybridization Energy -21.9468 kcal/mol@LB@Unfolding Energy - mRNA 7.33111 kcal/mol@LB@Unfolding Energy - sRNA 3.63929 kcal/mol@LB@@LB@Position - mRNA 227 -- 257@LB@Position - sRNA 55 -- 82@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 72 -- 78@LB@ |
16 |
3.593e-05 |
0.007912 |
b2294 |
yfbU |
-10.97 |
0.063921 |
276 -- 297 |
1 -- 22 |
UPF0304 family protein |
|
_____________275____________________298\n_____________|______________________|\n5'-GCA...CAAAU___GA_____ACCG________AAA-3'\n______________GCU__ACGUU____UCGCCUGC\n______________|||__|||||____||:|||||\n______________CGA__UGCAA____AGUGGACG\n3'-UUU...GGUAG___AC_____CGUA________-5'\n_____________|_____________________|\n_____________23____________________1\n |
291 -- 297 |
1 -- 7 |
-25.1893 kcal/mol |
6.12655 kcal/mol |
8.09964 kcal/mol |
275 298@LB@ | |@LB@5'-GCA...CAAAU GA ACCG AAA-3'@LB@ GCU ACGUU UCGCCUGC@LB@ ||| ||||| ||:|||||@LB@ CGA UGCAA AGUGGACG@LB@3'-UUU...GGUAG AC CGUA -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -10.97 kcal/mol@LB@Hybridization Energy -25.1893 kcal/mol@LB@Unfolding Energy - mRNA 6.12655 kcal/mol@LB@Unfolding Energy - sRNA 8.09964 kcal/mol@LB@@LB@Position - mRNA 276 -- 297@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 1 -- 7@LB@ |
107 |
0.003422 |
0.1114 |
b0415 |
ribE |
-10.96 |
0.064092 |
190 -- 254 |
4 -- 58 |
riboflavin synthase beta chain |
|
_____________189_________________________________________________________________255\n_____________|___________________________________________________________________|\n5'-CGG...AACCC________AAAAU_A___U___U_A_________UUGCUAC____GA____C_____C__CA_____AUCGC...GUG-3'\n______________GAAGGAAG_____G_ACA_UAU_G_AGC_UAACG_______CCCG__CGCU__GCGU_GC__UCACC\n______________:|||||||_____|_|||_|||_|_|||_:||||_______|||:__||||__:|||_||__|||||\n______________UUUCCUUC_____C_UGU_AUA_C_UCG_GUUGC_______GGGU__GCGA__UGCA_CG__AGUGG\n3'-UUU...AGUUU________AUU_______U___C_____C________________A_____AC____A__UA_____ACG-5'\n_____________|___________________________________________________________________|\n_____________59__________________________________________________________________3\n |
191 -- 197 |
51 -- 57 |
-41.366 kcal/mol |
13.5359 kcal/mol |
16.8715 kcal/mol |
189 255@LB@ | |@LB@5'-CGG...AACCC AAAAU A U U A UUGCUAC GA C C CA AUCGC...GUG-3'@LB@ GAAGGAAG G ACA UAU G AGC UAACG CCCG CGCU GCGU GC UCACC@LB@ :||||||| | ||| ||| | ||| :|||| |||: |||| :||| || |||||@LB@ UUUCCUUC C UGU AUA C UCG GUUGC GGGU GCGA UGCA CG AGUGG@LB@3'-UUU...AGUUU AUU U C C A AC A UA ACG-5'@LB@ | |@LB@ 59 3@LB@@LB@@LB@Energy -10.96 kcal/mol@LB@Hybridization Energy -41.366 kcal/mol@LB@Unfolding Energy - mRNA 13.5359 kcal/mol@LB@Unfolding Energy - sRNA 16.8715 kcal/mol@LB@@LB@Position - mRNA 190 -- 254@LB@Position - sRNA 4 -- 58@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 51 -- 57@LB@ |
113 |
0.00365 |
0.1131 |
b3154 |
yhbP |
-10.91 |
0.065979 |
249 -- 297 |
26 -- 85 |
UPF0306 family protein |
|
_____________248___________________________________________________________298\n_____________|_____________________________________________________________|\n5'-AAA...AUGUU____C___GUG_______C_____________________ACUC____U____U_______UUU-3'\n______________GUCA_UUG___UGUGCAG___________AGGAAG_GGGA_____UGG_GCGC_AAUGCCU\n______________:|||_|||___|:|||||___________||||||_::||_____|||_||||_||:|||:\n______________UAGU_AAC___AUACGUC___________UCCUUC_UUCU_____ACC_CGCG_UUGCGGG\n3'-UUU...AUGCU____U___ACG_______AUUAAGUUUUU______A____GUUAU___U____________UAGCG...ACG-5'\n_____________|_____________________________________________________________|\n_____________86____________________________________________________________25\n |
260 -- 266 |
68 -- 74 |
-42.816 kcal/mol |
18.2405 kcal/mol |
13.6657 kcal/mol |
248 298@LB@ | |@LB@5'-AAA...AUGUU C GUG C ACUC U U UUU-3'@LB@ GUCA UUG UGUGCAG AGGAAG GGGA UGG GCGC AAUGCCU@LB@ :||| ||| |:||||| |||||| ::|| ||| |||| ||:|||:@LB@ UAGU AAC AUACGUC UCCUUC UUCU ACC CGCG UUGCGGG@LB@3'-UUU...AUGCU U ACG AUUAAGUUUUU A GUUAU U UAGCG...ACG-5'@LB@ | |@LB@ 86 25@LB@@LB@@LB@Energy -10.91 kcal/mol@LB@Hybridization Energy -42.816 kcal/mol@LB@Unfolding Energy - mRNA 18.2405 kcal/mol@LB@Unfolding Energy - sRNA 13.6657 kcal/mol@LB@@LB@Position - mRNA 249 -- 297@LB@Position - sRNA 26 -- 85@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 68 -- 74@LB@ |
32 |
0.0001844 |
0.0203 |
b0006 |
yaaA |
-10.88 |
0.067423 |
215 -- 223 |
1 -- 9 |
peroxide resistance protein lowers intracellular iron |
|
_____________214_______224\n_____________|_________|\n5'-UUC...CUUAU_________GAAAA...AGU-3'\n______________UUCACCUGC\n______________|||||||||\n______________AAGUGGACG\n3'-UUU...AACGU_________-5'\n_____________|________|\n_____________10_______1\n |
217 -- 223 |
1 -- 7 |
-15.2887 kcal/mol |
2.04449 kcal/mol |
2.37317 kcal/mol |
214 224@LB@ | |@LB@5'-UUC...CUUAU GAAAA...AGU-3'@LB@ UUCACCUGC@LB@ |||||||||@LB@ AAGUGGACG@LB@3'-UUU...AACGU -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -10.88 kcal/mol@LB@Hybridization Energy -15.2887 kcal/mol@LB@Unfolding Energy - mRNA 2.04449 kcal/mol@LB@Unfolding Energy - sRNA 2.37317 kcal/mol@LB@@LB@Position - mRNA 215 -- 223@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 1 -- 7@LB@ |
155 |
0.006038 |
0.137 |
b4374 |
yjjG |
-10.88 |
0.067155 |
203 -- 266 |
1 -- 54 |
dUMP phosphatase |
|
_____________202_____________________________________________________________________267\n_____________|_______________________________________________________________________|\n5'-CUG...AUAAU__________________UUUUCUUU______G__GAAA____GUUUACCUU____U___________G__CUGCA...CCU-3'\n______________GAAGUGGGAC____UGGA________GAUGCC_AU____CGCU_________UGAC____CAUUCACC_GC\n______________|||||::|||____||||________:|:|||_||____||||_________||||____||||||||_||\n______________CUUCAUUCUG____ACCU________UUGCGG_UA____GCGA_________ACUG____GUAAGUGG_CG\n3'-UUU...UUUUC__________UUAU____CGCG__________G_______________________CAAC________A__-5'\n_____________|______________________________________________________________________|\n_____________55_____________________________________________________________________1\n |
257 -- 263 |
4 -- 10 |
-41.6423 kcal/mol |
13.9643 kcal/mol |
16.8 kcal/mol |
202 267@LB@ | |@LB@5'-CUG...AUAAU UUUUCUUU G GAAA GUUUACCUU U G CUGCA...CCU-3'@LB@ GAAGUGGGAC UGGA GAUGCC AU CGCU UGAC CAUUCACC GC@LB@ |||||::||| |||| :|:||| || |||| |||| |||||||| ||@LB@ CUUCAUUCUG ACCU UUGCGG UA GCGA ACUG GUAAGUGG CG@LB@3'-UUU...UUUUC UUAU CGCG G CAAC A -5'@LB@ | |@LB@ 55 1@LB@@LB@@LB@Energy -10.88 kcal/mol@LB@Hybridization Energy -41.6423 kcal/mol@LB@Unfolding Energy - mRNA 13.9643 kcal/mol@LB@Unfolding Energy - sRNA 16.8 kcal/mol@LB@@LB@Position - mRNA 203 -- 266@LB@Position - sRNA 1 -- 54@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 4 -- 10@LB@ |
135 |
0.00505 |
0.1318 |
b0918 |
kdsB |
-10.75 |
0.072320 |
21 -- 54 |
1 -- 42 |
3-deoxy-manno-octulosonate cytidylyltransferase |
|
_____________20_________________________________________55\n_____________|__________________________________________|\n5'-CCC...GGAAC______U____U______________AAU_____________CCGGU...UUC-3'\n______________UAUGGA___CA_CGUC___UGCUUGA_____CAUU_GCCUGC\n______________||||||___||_||:|___:||||||_____||||_:|||||\n______________AUACCU___GU_GCGG___GCGAACU_____GUAA_UGGACG\n3'-UUU...CUGUU______CGC__U____GUA_______GCAAC____G______-5'\n_____________|_________________________________________|\n_____________43________________________________________1\n |
35 -- 41 |
17 -- 23 |
-30.6746 kcal/mol |
4.6323 kcal/mol |
15.293 kcal/mol |
20 55@LB@ | |@LB@5'-CCC...GGAAC U U AAU CCGGU...UUC-3'@LB@ UAUGGA CA CGUC UGCUUGA CAUU GCCUGC@LB@ |||||| || ||:| :|||||| |||| :|||||@LB@ AUACCU GU GCGG GCGAACU GUAA UGGACG@LB@3'-UUU...CUGUU CGC U GUA GCAAC G -5'@LB@ | |@LB@ 43 1@LB@@LB@@LB@Energy -10.75 kcal/mol@LB@Hybridization Energy -30.6746 kcal/mol@LB@Unfolding Energy - mRNA 4.6323 kcal/mol@LB@Unfolding Energy - sRNA 15.293 kcal/mol@LB@@LB@Position - mRNA 21 -- 54@LB@Position - sRNA 1 -- 42@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 17 -- 23@LB@ |
150 |
0.005897 |
0.1368 |
b0887 |
cydD |
-10.72 |
0.073556 |
183 -- 190 |
1 -- 8 |
glutathione/cysteine ABC transporter export permease/ATPase |
|
_____________182______191\n_____________|________|\n5'-AUU...AUAAC________UAAGC...UGA-3'\n______________UCACCUGC\n______________||||||||\n______________AGUGGACG\n3'-UUU...ACGUA________-5'\n_____________|_______|\n_____________9_______1\n |
184 -- 190 |
1 -- 7 |
-15.001 kcal/mol |
1.91816 kcal/mol |
2.36381 kcal/mol |
182 191@LB@ | |@LB@5'-AUU...AUAAC UAAGC...UGA-3'@LB@ UCACCUGC@LB@ ||||||||@LB@ AGUGGACG@LB@3'-UUU...ACGUA -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -10.72 kcal/mol@LB@Hybridization Energy -15.001 kcal/mol@LB@Unfolding Energy - mRNA 1.91816 kcal/mol@LB@Unfolding Energy - sRNA 2.36381 kcal/mol@LB@@LB@Position - mRNA 183 -- 190@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 1 -- 7@LB@ |
17 |
4.003e-05 |
0.007917 |
b1066 |
rimJ |
-10.62 |
0.078044 |
194 -- 220 |
65 -- 91 |
ribosomal-protein-S5-alanine N-acetyltransferase |
|
_____________193___________________________221\n_____________|_____________________________|\n5'-AUU...AGUAG____A____GU__________C_______CGUGC...AUU-3'\n______________GUAU_GAAU___UUG_GCUAU_GCAGUAA\n______________|||:_||||___|||_|||||_|||||||\n______________CAUG_CUUA___AAC_CGAUA_CGUCAUU\n3'-UUU...CGCAG_________GUU___A_____________AAGUU...ACG-5'\n_____________|_____________________________|\n_____________92____________________________64\n |
214 -- 220 |
65 -- 71 |
-21.0331 kcal/mol |
5.8812 kcal/mol |
4.53558 kcal/mol |
193 221@LB@ | |@LB@5'-AUU...AGUAG A GU C CGUGC...AUU-3'@LB@ GUAU GAAU UUG GCUAU GCAGUAA@LB@ |||: |||| ||| ||||| |||||||@LB@ CAUG CUUA AAC CGAUA CGUCAUU@LB@3'-UUU...CGCAG GUU A AAGUU...ACG-5'@LB@ | |@LB@ 92 64@LB@@LB@@LB@Energy -10.62 kcal/mol@LB@Hybridization Energy -21.0331 kcal/mol@LB@Unfolding Energy - mRNA 5.8812 kcal/mol@LB@Unfolding Energy - sRNA 4.53558 kcal/mol@LB@@LB@Position - mRNA 194 -- 220@LB@Position - sRNA 65 -- 91@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 65 -- 71@LB@ |
65 |
0.001098 |
0.05953 |
b1479 |
maeA |
-10.62 |
0.077885 |
180 -- 205 |
37 -- 65 |
malate dehydrogenase decarboxylating NAD-requiring; malic enzyme |
|
_____________179___________________________206\n_____________|_____________________________|\n5'-UAG...UGGAU_______________________C_____ACCAA...GCA-3'\n______________AUUCAAAAAAG__AGUGAG_UGA_AUGGA\n______________|||||||||||__|||:||_::|_|||||\n______________UAAGUUUUUUC__UCAUUC_GUU_UACCU\n3'-UUU...GUCAU___________CU______U___A_____CGCGU...ACG-5'\n_____________|_____________________________|\n_____________66____________________________36\n |
184 -- 190 |
55 -- 61 |
-21.4117 kcal/mol |
4.89609 kcal/mol |
5.88101 kcal/mol |
179 206@LB@ | |@LB@5'-UAG...UGGAU C ACCAA...GCA-3'@LB@ AUUCAAAAAAG AGUGAG UGA AUGGA@LB@ ||||||||||| |||:|| ::| |||||@LB@ UAAGUUUUUUC UCAUUC GUU UACCU@LB@3'-UUU...GUCAU CU U A CGCGU...ACG-5'@LB@ | |@LB@ 66 36@LB@@LB@@LB@Energy -10.62 kcal/mol@LB@Hybridization Energy -21.4117 kcal/mol@LB@Unfolding Energy - mRNA 4.89609 kcal/mol@LB@Unfolding Energy - sRNA 5.88101 kcal/mol@LB@@LB@Position - mRNA 180 -- 205@LB@Position - sRNA 37 -- 65@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 55 -- 61@LB@ |
137 |
0.005185 |
0.1333 |
b2256 |
arnD |
-10.61 |
0.078275 |
62 -- 106 |
20 -- 56 |
undecaprenyl phosphate-alpha-L-ara4FN deformylase |
|
_____________61____________________________________________107\n_____________|_____________________________________________|\n5'-UUC...AUAUC____C____A___UC___AACC____AUCC__________C____GCCUG...AGG-3'\n______________AGGA_GUAG_GCA__GUA____GAGC____GCAAUGCCCA_CGCU\n______________||||_|||:_:||__:||____||||____||||:|||||_||||\n______________UCCU_CAUU_UGU__UAU____CUCG____CGUUGCGGGU_GCGA\n3'-UUU...UUUUU____U____C________AC____________________A____ACUGC...ACG-5'\n_____________|_____________________________________________|\n_____________57____________________________________________19\n |
95 -- 101 |
25 -- 31 |
-37.0072 kcal/mol |
12.6417 kcal/mol |
13.7538 kcal/mol |
61 107@LB@ | |@LB@5'-UUC...AUAUC C A UC AACC AUCC C GCCUG...AGG-3'@LB@ AGGA GUAG GCA GUA GAGC GCAAUGCCCA CGCU@LB@ |||| |||: :|| :|| |||| ||||:||||| ||||@LB@ UCCU CAUU UGU UAU CUCG CGUUGCGGGU GCGA@LB@3'-UUU...UUUUU U C AC A ACUGC...ACG-5'@LB@ | |@LB@ 57 19@LB@@LB@@LB@Energy -10.61 kcal/mol@LB@Hybridization Energy -37.0072 kcal/mol@LB@Unfolding Energy - mRNA 12.6417 kcal/mol@LB@Unfolding Energy - sRNA 13.7538 kcal/mol@LB@@LB@Position - mRNA 62 -- 106@LB@Position - sRNA 20 -- 56@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 25 -- 31@LB@ |
43 |
0.0004177 |
0.03347 |
b3652 |
recG |
-10.52 |
0.082371 |
49 -- 71 |
17 -- 38 |
ATP-dependent DNA helicase |
|
_____________48______________________72\n_____________|_______________________|\n5'-CAA...AAGCA____AA_________________AGGCG...UGC-3'\n______________GAGC__CAACGCCUGUUGUUUGA\n______________||||__|||||||::|:|:||||\n______________CUCG__GUUGCGGGUAGCGAACU\n3'-UUU...UAUAC____C__________________GCAAC...ACG-5'\n_____________|_______________________|\n_____________39______________________16\n |
63 -- 69 |
19 -- 25 |
-31.2627 kcal/mol |
8.52631 kcal/mol |
12.2147 kcal/mol |
48 72@LB@ | |@LB@5'-CAA...AAGCA AA AGGCG...UGC-3'@LB@ GAGC CAACGCCUGUUGUUUGA@LB@ |||| |||||||::|:|:||||@LB@ CUCG GUUGCGGGUAGCGAACU@LB@3'-UUU...UAUAC C GCAAC...ACG-5'@LB@ | |@LB@ 39 16@LB@@LB@@LB@Energy -10.52 kcal/mol@LB@Hybridization Energy -31.2627 kcal/mol@LB@Unfolding Energy - mRNA 8.52631 kcal/mol@LB@Unfolding Energy - sRNA 12.2147 kcal/mol@LB@@LB@Position - mRNA 49 -- 71@LB@Position - sRNA 17 -- 38@LB@Position Seed - mRNA 63 -- 69@LB@Position Seed - sRNA 19 -- 25@LB@ |
109 |
0.003466 |
0.1114 |
b4485 |
ytfR |
-10.51 |
0.083206 |
29 -- 56 |
35 -- 61 |
putative sugar ABC transporter ATPase |
|
_____________28____________________________57\n_____________|_____________________________|\n5'-CCU...AAGAA___UU__A_________AA__________AUUGA...GCC-3'\n______________GAA__AG_GAAG_AAGA__AAUAUGGGGU\n______________:||__||_||||_||||__|||||||:|:\n______________UUU__UC_CUUC_UUCU__UUAUACCUCG\n3'-UUU...UUAAG___UU_______A____G___________CGUUG...ACG-5'\n_____________|_____________________________|\n_____________62____________________________34\n |
50 -- 56 |
35 -- 41 |
-20.6661 kcal/mol |
5.51365 kcal/mol |
4.61294 kcal/mol |
28 57@LB@ | |@LB@5'-CCU...AAGAA UU A AA AUUGA...GCC-3'@LB@ GAA AG GAAG AAGA AAUAUGGGGU@LB@ :|| || |||| |||| |||||||:|:@LB@ UUU UC CUUC UUCU UUAUACCUCG@LB@3'-UUU...UUAAG UU A G CGUUG...ACG-5'@LB@ | |@LB@ 62 34@LB@@LB@@LB@Energy -10.51 kcal/mol@LB@Hybridization Energy -20.6661 kcal/mol@LB@Unfolding Energy - mRNA 5.51365 kcal/mol@LB@Unfolding Energy - sRNA 4.61294 kcal/mol@LB@@LB@Position - mRNA 29 -- 56@LB@Position - sRNA 35 -- 61@LB@Position Seed - mRNA 50 -- 56@LB@Position Seed - sRNA 35 -- 41@LB@ |
100 |
0.003303 |
0.1114 |
b1126 |
potA |
-10.42 |
0.087379 |
73 -- 89 |
61 -- 76 |
spermidine/putrescine ABC transporter ATPase |
|
_____________72________________90\n_____________|_________________|\n5'-CAA...AUAAA____A_C__________CAACA...UUC-3'\n______________GCUA_G_CAGUAAUUCA\n______________||||_|_||||||||||\n______________CGAU_C_GUCAUUAAGU\n3'-UUU...UAACA____A____________UUUUU...ACG-5'\n_____________|_________________|\n_____________77________________60\n |
83 -- 89 |
61 -- 67 |
-17.6149 kcal/mol |
3.71554 kcal/mol |
3.47887 kcal/mol |
72 90@LB@ | |@LB@5'-CAA...AUAAA A C CAACA...UUC-3'@LB@ GCUA G CAGUAAUUCA@LB@ |||| | ||||||||||@LB@ CGAU C GUCAUUAAGU@LB@3'-UUU...UAACA A UUUUU...ACG-5'@LB@ | |@LB@ 77 60@LB@@LB@@LB@Energy -10.42 kcal/mol@LB@Hybridization Energy -17.6149 kcal/mol@LB@Unfolding Energy - mRNA 3.71554 kcal/mol@LB@Unfolding Energy - sRNA 3.47887 kcal/mol@LB@@LB@Position - mRNA 73 -- 89@LB@Position - sRNA 61 -- 76@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 61 -- 67@LB@ |
132 |
0.004965 |
0.1313 |
b0876 |
ybjD |
-10.35 |
0.091015 |
20 -- 74 |
49 -- 93 |
putative OLD family ATP-dependent endonuclease; DUF2813 family protein |
|
_____________19______________________________________________________75\n_____________|_______________________________________________________|\n5'-CGU...AUUUA__A___U_____U___AUUU_____UUUU_____ACUUA____C___________UAACG...GGG-3'\n______________UC_UGC_AAUUA_UUG____UGUUG____UGCAG_____UCAG_AAGAGGGAGUA\n______________||_|:|_|||:|_|||____||:|:____|||||_____|||:_||:|||:||||\n______________AG_AUG_UUAGU_AAC____ACGAU____ACGUC_____AGUU_UUUUCCUUCAU\n3'-UUU...GCCGC__C___C_____U_____________________AUUA_________________UCUGU...ACG-5'\n_____________|_______________________________________________________|\n_____________94______________________________________________________48\n |
68 -- 74 |
49 -- 55 |
-28.5607 kcal/mol |
13.348 kcal/mol |
4.86987 kcal/mol |
19 75@LB@ | |@LB@5'-CGU...AUUUA A U U AUUU UUUU ACUUA C UAACG...GGG-3'@LB@ UC UGC AAUUA UUG UGUUG UGCAG UCAG AAGAGGGAGUA@LB@ || |:| |||:| ||| ||:|: ||||| |||: ||:|||:||||@LB@ AG AUG UUAGU AAC ACGAU ACGUC AGUU UUUUCCUUCAU@LB@3'-UUU...GCCGC C C U AUUA UCUGU...ACG-5'@LB@ | |@LB@ 94 48@LB@@LB@@LB@Energy -10.35 kcal/mol@LB@Hybridization Energy -28.5607 kcal/mol@LB@Unfolding Energy - mRNA 13.348 kcal/mol@LB@Unfolding Energy - sRNA 4.86987 kcal/mol@LB@@LB@Position - mRNA 20 -- 74@LB@Position - sRNA 49 -- 93@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 49 -- 55@LB@ |
23 |
8.752e-05 |
0.01341 |
b1476 |
fdnI |
-10.32 |
0.092280 |
170 -- 193 |
36 -- 57 |
formate dehydrogenase-N cytochrome B556 (gamma) subunit nitrate-inducible |
|
_____________169_______________________194\n_____________|_________________________|\n5'-CGU...CGAAU_________________ACGA____GAUCA...UUU-3'\n______________AAGGAAGU_GGACGAUG____GGAG\n______________||||||||_:|||:||:____||||\n______________UUCCUUCA_UCUGUUAU____CCUC\n3'-UUU...GUUUU________U________A_______GCGUU...ACG-5'\n_____________|_________________________|\n_____________58________________________35\n |
179 -- 185 |
41 -- 47 |
-22.1274 kcal/mol |
8.02585 kcal/mol |
3.74338 kcal/mol |
169 194@LB@ | |@LB@5'-CGU...CGAAU ACGA GAUCA...UUU-3'@LB@ AAGGAAGU GGACGAUG GGAG@LB@ |||||||| :|||:||: ||||@LB@ UUCCUUCA UCUGUUAU CCUC@LB@3'-UUU...GUUUU U A GCGUU...ACG-5'@LB@ | |@LB@ 58 35@LB@@LB@@LB@Energy -10.32 kcal/mol@LB@Hybridization Energy -22.1274 kcal/mol@LB@Unfolding Energy - mRNA 8.02585 kcal/mol@LB@Unfolding Energy - sRNA 3.74338 kcal/mol@LB@@LB@Position - mRNA 170 -- 193@LB@Position - sRNA 36 -- 57@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 41 -- 47@LB@ |
175 |
0.007208 |
0.145 |
b1444 |
patD |
-10.32 |
0.092173 |
197 -- 205 |
69 -- 77 |
gamma-aminobutyraldehyde dehydrogenase |
|
_____________196_______206\n_____________|_________|\n5'-UCG...GAAUA_________ACAUA...UUG-3'\n______________UGCUAUGCA\n______________|||||||||\n______________ACGAUACGU\n3'-UUU...UUAAC_________CAUUA...ACG-5'\n_____________|_________|\n_____________78________68\n |
199 -- 205 |
69 -- 75 |
-13.9965 kcal/mol |
1.91367 kcal/mol |
1.75858 kcal/mol |
196 206@LB@ | |@LB@5'-UCG...GAAUA ACAUA...UUG-3'@LB@ UGCUAUGCA@LB@ |||||||||@LB@ ACGAUACGU@LB@3'-UUU...UUAAC CAUUA...ACG-5'@LB@ | |@LB@ 78 68@LB@@LB@@LB@Energy -10.32 kcal/mol@LB@Hybridization Energy -13.9965 kcal/mol@LB@Unfolding Energy - mRNA 1.91367 kcal/mol@LB@Unfolding Energy - sRNA 1.75858 kcal/mol@LB@@LB@Position - mRNA 197 -- 205@LB@Position - sRNA 69 -- 77@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 69 -- 75@LB@ |
37 |
0.0003128 |
0.02889 |
b1107 |
nagZ |
-10.24 |
0.096497 |
189 -- 204 |
38 -- 57 |
beta N-acetyl-glucosaminidase |
|
_____________188__________________205\n_____________|____________________|\n5'-AUU...ACAAU____________________GUCCA...CGC-3'\n______________AAGGA___GAG_CAGUGUGG\n______________|||||___:||_||:|:|||\n______________UUCCU___UUC_GUUAUACC\n3'-UUU...GUUUU_____UCA___U________UCGCG...ACG-5'\n_____________|____________________|\n_____________58___________________37\n |
198 -- 204 |
38 -- 44 |
-15.5747 kcal/mol |
1.78066 kcal/mol |
3.52446 kcal/mol |
188 205@LB@ | |@LB@5'-AUU...ACAAU GUCCA...CGC-3'@LB@ AAGGA GAG CAGUGUGG@LB@ ||||| :|| ||:|:|||@LB@ UUCCU UUC GUUAUACC@LB@3'-UUU...GUUUU UCA U UCGCG...ACG-5'@LB@ | |@LB@ 58 37@LB@@LB@@LB@Energy -10.24 kcal/mol@LB@Hybridization Energy -15.5747 kcal/mol@LB@Unfolding Energy - mRNA 1.78066 kcal/mol@LB@Unfolding Energy - sRNA 3.52446 kcal/mol@LB@@LB@Position - mRNA 189 -- 204@LB@Position - sRNA 38 -- 57@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 38 -- 44@LB@ |
50 |
0.0005726 |
0.04013 |
b2215 |
ompC |
-10.22 |
0.097386 |
138 -- 180 |
44 -- 87 |
outer membrane porin protein C |
b0929 b0241 b1377 |
_____________137___________________________________________181\n_____________|_____________________________________________|\n5'-AUC...AAUGA________CAG____________CA________CAAAUA______UAUAA...AUC-3'\n______________GGGUUAAU_____UAUGCAGUGG__UAAAAAAG______AAGGCA\n______________|::|:|||_____||||||||::__:|||||||______|||:||\n______________CUUAGUUA_____AUACGUCAUU__GUUUUUUC______UUCUGU\n3'-UUU...GCAUG________ACACG__________AA________CUUCA_______UAUAC...ACG-5'\n_____________|_____________________________________________|\n_____________88____________________________________________43\n |
162 -- 168 |
55 -- 61 |
-25.937 kcal/mol |
10.0096 kcal/mol |
5.70573 kcal/mol |
137 181@LB@ | |@LB@5'-AUC...AAUGA CAG CA CAAAUA UAUAA...AUC-3'@LB@ GGGUUAAU UAUGCAGUGG UAAAAAAG AAGGCA@LB@ |::|:||| ||||||||:: :||||||| |||:||@LB@ CUUAGUUA AUACGUCAUU GUUUUUUC UUCUGU@LB@3'-UUU...GCAUG ACACG AA CUUCA UAUAC...ACG-5'@LB@ | |@LB@ 88 43@LB@@LB@@LB@Energy -10.22 kcal/mol@LB@Hybridization Energy -25.937 kcal/mol@LB@Unfolding Energy - mRNA 10.0096 kcal/mol@LB@Unfolding Energy - sRNA 5.70573 kcal/mol@LB@@LB@Position - mRNA 138 -- 180@LB@Position - sRNA 44 -- 87@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 55 -- 61@LB@ |
141 |
0.005411 |
0.1351 |
b3260 |
dusB |
-10.20 |
0.098848 |
236 -- 254 |
20 -- 38 |
tRNA-dihydrouridine synthase B |
|
_____________235_________________255\n_____________|___________________|\n5'-ACU...CGCCU__U____________G___GGCAU...GAG-3'\n______________GA_CGCAGCGCCCAU_GCU\n______________||_||||:|||||||_|||\n______________CU_GCGUUGCGGGUA_CGA\n3'-UUU...UAUAC__C____________G___ACUGC...ACG-5'\n_____________|___________________|\n_____________39__________________19\n |
244 -- 250 |
24 -- 30 |
-30.8965 kcal/mol |
8.5282 kcal/mol |
12.1733 kcal/mol |
235 255@LB@ | |@LB@5'-ACU...CGCCU U G GGCAU...GAG-3'@LB@ GA CGCAGCGCCCAU GCU@LB@ || ||||:||||||| |||@LB@ CU GCGUUGCGGGUA CGA@LB@3'-UUU...UAUAC C G ACUGC...ACG-5'@LB@ | |@LB@ 39 19@LB@@LB@@LB@Energy -10.20 kcal/mol@LB@Hybridization Energy -30.8965 kcal/mol@LB@Unfolding Energy - mRNA 8.5282 kcal/mol@LB@Unfolding Energy - sRNA 12.1733 kcal/mol@LB@@LB@Position - mRNA 236 -- 254@LB@Position - sRNA 20 -- 38@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 24 -- 30@LB@ |
106 |
0.003401 |
0.1114 |
b1848 |
yebG |
-10.18 |
0.099613 |
222 -- 299 |
16 -- 71 |
DNA damage-inducible protein regulated by LexA |
|
_____________221_______________________________________________________________________________300\n_____________|_________________________________________________________________________________|\n5'-GUU...AAUAC_____C_____U_____C_________A_____CGUUUACCAGCAAAAA__A______________GACAAAA________A-3'\n______________GUAGU_AUUCG_GAGGG_GAAG__AGA_AAUGU________________GG_AGC_CGAUGCUUAU_______UGCUUGAU\n______________|:|||_||||:_:|::|_||||__|||_|||:|________________||_|||_|:|:||::||_______:||||||:\n______________CGUCA_UAAGU_UUUUC_CUUC__UCU_UUAUA________________CC_UCG_GUUGCGGGUA_______GCGAACUG\n3'-UUU...CGAUA_____U_____U__________AU___G___________________________C_________________________CAACG...ACG-5'\n_____________|_________________________________________________________________________________|\n_____________72________________________________________________________________________________15\n |
293 -- 299 |
16 -- 22 |
-43.4853 kcal/mol |
15.7801 kcal/mol |
17.5254 kcal/mol |
221 300@LB@ | |@LB@5'-GUU...AAUAC C U C A CGUUUACCAGCAAAAA A GACAAAA A-3'@LB@ GUAGU AUUCG GAGGG GAAG AGA AAUGU GG AGC CGAUGCUUAU UGCUUGAU@LB@ |:||| ||||: :|::| |||| ||| |||:| || ||| |:|:||::|| :||||||:@LB@ CGUCA UAAGU UUUUC CUUC UCU UUAUA CC UCG GUUGCGGGUA GCGAACUG@LB@3'-UUU...CGAUA U U AU G C CAACG...ACG-5'@LB@ | |@LB@ 72 15@LB@@LB@@LB@Energy -10.18 kcal/mol@LB@Hybridization Energy -43.4853 kcal/mol@LB@Unfolding Energy - mRNA 15.7801 kcal/mol@LB@Unfolding Energy - sRNA 17.5254 kcal/mol@LB@@LB@Position - mRNA 222 -- 299@LB@Position - sRNA 16 -- 71@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 16 -- 22@LB@ |
53 |
0.0006788 |
0.04512 |
b3949 |
frwC |
-10.17 |
0.100438 |
200 -- 218 |
68 -- 90 |
putative enzyme IIC component of PTS |
|
_____________199_____________________219\n_____________|_______________________|\n5'-UUG...CAGCU_______G_______________AUCCU...UGG-3'\n______________UAUGAAU_AGUUG____GUGCAG\n______________||:||||_|:|||____:|||||\n______________AUGCUUA_UUAAC____UACGUC\n3'-UUU...GCAGC_______G_____ACGA______AUUAA...ACG-5'\n_____________|_______________________|\n_____________91______________________67\n |
200 -- 206 |
84 -- 90 |
-18.2816 kcal/mol |
3.60123 kcal/mol |
4.51505 kcal/mol |
199 219@LB@ | |@LB@5'-UUG...CAGCU G AUCCU...UGG-3'@LB@ UAUGAAU AGUUG GUGCAG@LB@ ||:|||| |:||| :|||||@LB@ AUGCUUA UUAAC UACGUC@LB@3'-UUU...GCAGC G ACGA AUUAA...ACG-5'@LB@ | |@LB@ 91 67@LB@@LB@@LB@Energy -10.17 kcal/mol@LB@Hybridization Energy -18.2816 kcal/mol@LB@Unfolding Energy - mRNA 3.60123 kcal/mol@LB@Unfolding Energy - sRNA 4.51505 kcal/mol@LB@@LB@Position - mRNA 200 -- 218@LB@Position - sRNA 68 -- 90@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 84 -- 90@LB@ |
82 |
0.001946 |
0.08273 |
b2661 |
gabD |
-10.13 |
0.102437 |
19 -- 25 |
1 -- 7 |
succinate-semialdehyde dehydrogenase I NADP-dependent |
|
_____________18______26\n_____________|_______|\n5'-CAC...AUCCA_______AAUGC...CGG-3'\n______________CACCUGC\n______________|||||||\n______________GUGGACG\n3'-UUU...CGUAA_______-5'\n_____________|______|\n_____________8______1\n |
19 -- 25 |
1 -- 7 |
-13.7555 kcal/mol |
1.28845 kcal/mol |
2.34039 kcal/mol |
18 26@LB@ | |@LB@5'-CAC...AUCCA AAUGC...CGG-3'@LB@ CACCUGC@LB@ |||||||@LB@ GUGGACG@LB@3'-UUU...CGUAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -10.13 kcal/mol@LB@Hybridization Energy -13.7555 kcal/mol@LB@Unfolding Energy - mRNA 1.28845 kcal/mol@LB@Unfolding Energy - sRNA 2.34039 kcal/mol@LB@@LB@Position - mRNA 19 -- 25@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 1 -- 7@LB@ |
122 |
0.004264 |
0.1231 |
b2914 |
rpiA |
-10.11 |
0.103884 |
190 -- 234 |
45 -- 89 |
ribose 5-phosphate isomerase constitutive |
|
_____________189______________________________________________235\n_____________|________________________________________________|\n5'-GAA...CACAG_____A____CA__AC______GAUGA___G_______C_________GGGCG...CAC-3'\n______________GCGAA_CGAU__UG____GCAG_____AUU_AAAAAAG__AGUAGGAU\n______________:||||_|:||__||____||||_____|||_|||||||__||||:||:\n______________UGCUU_GUUA__AC____CGUC_____UAA_UUUUUUC__UCAUUCUG\n3'-UUU...CAGCA_____A____AC__GAUA____AU______G_______CU________UUAUA...ACG-5'\n_____________|________________________________________________|\n_____________90_______________________________________________44\n |
228 -- 234 |
45 -- 51 |
-27.3521 kcal/mol |
11.527 kcal/mol |
5.72096 kcal/mol |
189 235@LB@ | |@LB@5'-GAA...CACAG A CA AC GAUGA G C GGGCG...CAC-3'@LB@ GCGAA CGAU UG GCAG AUU AAAAAAG AGUAGGAU@LB@ :|||| |:|| || |||| ||| ||||||| ||||:||:@LB@ UGCUU GUUA AC CGUC UAA UUUUUUC UCAUUCUG@LB@3'-UUU...CAGCA A AC GAUA AU G CU UUAUA...ACG-5'@LB@ | |@LB@ 90 44@LB@@LB@@LB@Energy -10.11 kcal/mol@LB@Hybridization Energy -27.3521 kcal/mol@LB@Unfolding Energy - mRNA 11.527 kcal/mol@LB@Unfolding Energy - sRNA 5.72096 kcal/mol@LB@@LB@Position - mRNA 190 -- 234@LB@Position - sRNA 45 -- 89@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 45 -- 51@LB@ |
95 |
0.002866 |
0.1063 |
b1338 |
abgA |
-10.09 |
0.104797 |
206 -- 225 |
73 -- 94 |
p-aminobenzoyl-glutamate hydrolase A subunit |
|
_____________205____________________226\n_____________|______________________|\n5'-GAU...AUGGA___UU_________________AUUCG...UCC-3'\n______________GUC___UGAAUCAAUU_UGUUA\n______________|||___:|||||||||_||:||\n______________CAG___GCUUAGUUAA_ACGAU\n3'-UUU...AGCCG___CAU__________C_____ACGUC...ACG-5'\n_____________|______________________|\n_____________95_____________________72\n |
214 -- 220 |
79 -- 85 |
-14.4971 kcal/mol |
2.01447 kcal/mol |
2.39569 kcal/mol |
205 226@LB@ | |@LB@5'-GAU...AUGGA UU AUUCG...UCC-3'@LB@ GUC UGAAUCAAUU UGUUA@LB@ ||| :||||||||| ||:||@LB@ CAG GCUUAGUUAA ACGAU@LB@3'-UUU...AGCCG CAU C ACGUC...ACG-5'@LB@ | |@LB@ 95 72@LB@@LB@@LB@Energy -10.09 kcal/mol@LB@Hybridization Energy -14.4971 kcal/mol@LB@Unfolding Energy - mRNA 2.01447 kcal/mol@LB@Unfolding Energy - sRNA 2.39569 kcal/mol@LB@@LB@Position - mRNA 206 -- 225@LB@Position - sRNA 73 -- 94@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 79 -- 85@LB@ |
162 |
0.006351 |
0.1377 |
b1869 |
yecN |
-10.06 |
0.106335 |
266 -- 273 |
1 -- 8 |
MAPEG family inner membrane protein |
|
_____________265______274\n_____________|________|\n5'-UCA...GUCGU________GAAUG...GCG-3'\n______________UCGCCUGC\n______________||:|||||\n______________AGUGGACG\n3'-UUU...ACGUA________-5'\n_____________|_______|\n_____________9_______1\n |
267 -- 273 |
1 -- 7 |
-14.5941 kcal/mol |
2.17055 kcal/mol |
2.36381 kcal/mol |
265 274@LB@ | |@LB@5'-UCA...GUCGU GAAUG...GCG-3'@LB@ UCGCCUGC@LB@ ||:|||||@LB@ AGUGGACG@LB@3'-UUU...ACGUA -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -10.06 kcal/mol@LB@Hybridization Energy -14.5941 kcal/mol@LB@Unfolding Energy - mRNA 2.17055 kcal/mol@LB@Unfolding Energy - sRNA 2.36381 kcal/mol@LB@@LB@Position - mRNA 266 -- 273@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 1 -- 7@LB@ |
66 |
0.001137 |
0.05992 |
b0076 |
leuO |
-9.90 |
0.116504 |
167 -- 195 |
35 -- 60 |
global transcription factor |
|
_____________166_____________________________196\n_____________|_______________________________|\n5'-UAU...AUAAG___________UAAGUGU_____________UAAGU...UGA-3'\n______________GGAAAGGGAGU_______GACA__GUGGAGU\n______________::|||||:|||_______||||__:|||||:\n______________UUUUUCCUUCA_______CUGU__UACCUCG\n3'-UUU...UAAGU___________UU_________UA_______CGUUG...ACG-5'\n_____________|_______________________________|\n_____________61______________________________34\n |
189 -- 195 |
35 -- 41 |
-23.1584 kcal/mol |
8.98888 kcal/mol |
4.23745 kcal/mol |
166 196@LB@ | |@LB@5'-UAU...AUAAG UAAGUGU UAAGU...UGA-3'@LB@ GGAAAGGGAGU GACA GUGGAGU@LB@ ::|||||:||| |||| :|||||:@LB@ UUUUUCCUUCA CUGU UACCUCG@LB@3'-UUU...UAAGU UU UA CGUUG...ACG-5'@LB@ | |@LB@ 61 34@LB@@LB@@LB@Energy -9.90 kcal/mol@LB@Hybridization Energy -23.1584 kcal/mol@LB@Unfolding Energy - mRNA 8.98888 kcal/mol@LB@Unfolding Energy - sRNA 4.23745 kcal/mol@LB@@LB@Position - mRNA 167 -- 195@LB@Position - sRNA 35 -- 60@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 35 -- 41@LB@ |
80 |
0.001886 |
0.08273 |
b3205 |
yhbJ |
-9.88 |
0.117656 |
21 -- 27 |
1 -- 7 |
adaptor protein for GlmZ/GlmY sRNA decay glucosamine-6-phosphate-regulated; NTPase |
|
_____________20______28\n_____________|_______|\n5'-CGG...AAACG_______AUACU...CCG-3'\n______________CACCUGC\n______________|||||||\n______________GUGGACG\n3'-UUU...CGUAA_______-5'\n_____________|______|\n_____________8______1\n |
21 -- 27 |
1 -- 7 |
-13.6981 kcal/mol |
1.48735 kcal/mol |
2.34039 kcal/mol |
20 28@LB@ | |@LB@5'-CGG...AAACG AUACU...CCG-3'@LB@ CACCUGC@LB@ |||||||@LB@ GUGGACG@LB@3'-UUU...CGUAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -13.6981 kcal/mol@LB@Unfolding Energy - mRNA 1.48735 kcal/mol@LB@Unfolding Energy - sRNA 2.34039 kcal/mol@LB@@LB@Position - mRNA 21 -- 27@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 1 -- 7@LB@ |
103 |
0.003335 |
0.1114 |
b3494 |
uspB |
-9.88 |
0.117554 |
193 -- 207 |
43 -- 57 |
universal stress (ethanol tolerance) protein B |
|
_____________192_____________208\n_____________|_______________|\n5'-AAU...CCGGG_________U_____GCACC...UGC-3'\n______________GAGGAGGUA_GAUAA\n______________:||||:|||_||:||\n______________UUCCUUCAU_CUGUU\n3'-UUU...GUUUU_________U_____AUACC...ACG-5'\n_____________|_______________|\n_____________58______________42\n |
195 -- 201 |
49 -- 55 |
-16.0492 kcal/mol |
4.41466 kcal/mol |
1.75421 kcal/mol |
192 208@LB@ | |@LB@5'-AAU...CCGGG U GCACC...UGC-3'@LB@ GAGGAGGUA GAUAA@LB@ :||||:||| ||:||@LB@ UUCCUUCAU CUGUU@LB@3'-UUU...GUUUU U AUACC...ACG-5'@LB@ | |@LB@ 58 42@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -16.0492 kcal/mol@LB@Unfolding Energy - mRNA 4.41466 kcal/mol@LB@Unfolding Energy - sRNA 1.75421 kcal/mol@LB@@LB@Position - mRNA 193 -- 207@LB@Position - sRNA 43 -- 57@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 49 -- 55@LB@ |
193 |
0.00868 |
0.1548 |
b4226 |
ppa |
-9.88 |
0.117380 |
102 -- 122 |
43 -- 61 |
inorganic pyrophosphatase |
|
_____________101___________________123\n_____________|_____________________|\n5'-AUA...CUGGU__________AAUG_______AAACA...UCG-3'\n______________GAAAAAGGAA____AAGACGA\n______________:|||||||||____|||||:|\n______________UUUUUUCCUU____UUCUGUU\n3'-UUU...UUAAG__________CA_________AUACC...ACG-5'\n_____________|_____________________|\n_____________62____________________42\n |
116 -- 122 |
43 -- 49 |
-15.2744 kcal/mol |
3.19261 kcal/mol |
2.19883 kcal/mol |
101 123@LB@ | |@LB@5'-AUA...CUGGU AAUG AAACA...UCG-3'@LB@ GAAAAAGGAA AAGACGA@LB@ :||||||||| |||||:|@LB@ UUUUUUCCUU UUCUGUU@LB@3'-UUU...UUAAG CA AUACC...ACG-5'@LB@ | |@LB@ 62 42@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -15.2744 kcal/mol@LB@Unfolding Energy - mRNA 3.19261 kcal/mol@LB@Unfolding Energy - sRNA 2.19883 kcal/mol@LB@@LB@Position - mRNA 102 -- 122@LB@Position - sRNA 43 -- 61@LB@Position Seed - mRNA 116 -- 122@LB@Position Seed - sRNA 43 -- 49@LB@ |
45 |
0.0004696 |
0.03623 |
b4035 |
malK |
-9.83 |
0.120497 |
188 -- 201 |
44 -- 57 |
maltose ABC transportor ATPase |
|
_____________187____________202\n_____________|______________|\n5'-CGC...UUACA_______A______UGGCG...UGU-3'\n______________AAGGGAG_AGGGCA\n______________||||:||_|:|:||\n______________UUCCUUC_UUCUGU\n3'-UUU...GUUUU_______A______UAUAC...ACG-5'\n_____________|______________|\n_____________58_____________43\n |
188 -- 194 |
51 -- 57 |
-14.5332 kcal/mol |
2.95068 kcal/mol |
1.74831 kcal/mol |
187 202@LB@ | |@LB@5'-CGC...UUACA A UGGCG...UGU-3'@LB@ AAGGGAG AGGGCA@LB@ ||||:|| |:|:||@LB@ UUCCUUC UUCUGU@LB@3'-UUU...GUUUU A UAUAC...ACG-5'@LB@ | |@LB@ 58 43@LB@@LB@@LB@Energy -9.83 kcal/mol@LB@Hybridization Energy -14.5332 kcal/mol@LB@Unfolding Energy - mRNA 2.95068 kcal/mol@LB@Unfolding Energy - sRNA 1.74831 kcal/mol@LB@@LB@Position - mRNA 188 -- 201@LB@Position - sRNA 44 -- 57@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 51 -- 57@LB@ |
68 |
0.001184 |
0.06134 |
b3188 |
sfsB |
-9.82 |
0.121108 |
186 -- 205 |
37 -- 57 |
malPQ operon transcriptional activator |
|
_____________185___________________206\n_____________|_____________________|\n5'-CGG...AACUU____________AAAA_____AAGUA...UGA-3'\n______________AAGG_AGUGAGG____AUGGA\n______________||||_|||:||:____|||||\n______________UUCC_UCAUUCU____UACCU\n3'-UUU...GUUUU____U_______GUUA_____CGCGU...ACG-5'\n_____________|_____________________|\n_____________58____________________36\n |
190 -- 196 |
46 -- 52 |
-17.294 kcal/mol |
3.7439 kcal/mol |
3.68958 kcal/mol |
185 206@LB@ | |@LB@5'-CGG...AACUU AAAA AAGUA...UGA-3'@LB@ AAGG AGUGAGG AUGGA@LB@ |||| |||:||: |||||@LB@ UUCC UCAUUCU UACCU@LB@3'-UUU...GUUUU U GUUA CGCGU...ACG-5'@LB@ | |@LB@ 58 36@LB@@LB@@LB@Energy -9.82 kcal/mol@LB@Hybridization Energy -17.294 kcal/mol@LB@Unfolding Energy - mRNA 3.7439 kcal/mol@LB@Unfolding Energy - sRNA 3.68958 kcal/mol@LB@@LB@Position - mRNA 186 -- 205@LB@Position - sRNA 37 -- 57@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 46 -- 52@LB@ |
83 |
0.001966 |
0.08273 |
b1584 |
speG |
-9.79 |
0.123144 |
169 -- 214 |
25 -- 77 |
spermidine N(1)-acetyltransferase |
|
_____________168_____________________________________________________215\n_____________|_______________________________________________________|\n5'-UCU...UAACC__________________________U____G____CGUUAU___CA________CAGUG...GGU-3'\n______________UGUUAU____UGAUUUA____AGGAA_GUAA_GACA_______GC__AGCGCCCA\n______________||:|||____|:|||:|____|||||_||||_||||_______||__|:||||||\n______________ACGAUA____AUUAAGU____UCCUU_CAUU_CUGU_______CG__UUGCGGGU\n3'-UUU...UUAAC______CGUC_______UUUU_______________UAUACCU__CG________AGCGA...ACG-5'\n_____________|_______________________________________________________|\n_____________78______________________________________________________24\n |
208 -- 214 |
25 -- 31 |
-32.6914 kcal/mol |
9.23779 kcal/mol |
13.6641 kcal/mol |
168 215@LB@ | |@LB@5'-UCU...UAACC U G CGUUAU CA CAGUG...GGU-3'@LB@ UGUUAU UGAUUUA AGGAA GUAA GACA GC AGCGCCCA@LB@ ||:||| |:|||:| ||||| |||| |||| || |:||||||@LB@ ACGAUA AUUAAGU UCCUU CAUU CUGU CG UUGCGGGU@LB@3'-UUU...UUAAC CGUC UUUU UAUACCU CG AGCGA...ACG-5'@LB@ | |@LB@ 78 24@LB@@LB@@LB@Energy -9.79 kcal/mol@LB@Hybridization Energy -32.6914 kcal/mol@LB@Unfolding Energy - mRNA 9.23779 kcal/mol@LB@Unfolding Energy - sRNA 13.6641 kcal/mol@LB@@LB@Position - mRNA 169 -- 214@LB@Position - sRNA 25 -- 77@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 25 -- 31@LB@ |
28 |
0.0001471 |
0.01851 |
b0997 |
torA |
-9.78 |
0.123932 |
184 -- 203 |
41 -- 60 |
trimethylamine N-oxide (TMAO) reductase I catalytic subunit |
b3551 b1872 |
_____________183__________________204\n_____________|____________________|\n5'-UAC...GCGAU__________A__A______AACAA...CGC-3'\n______________AAGAAGGAAG_AA_AUAAUG\n______________||:|||||||_||_|:|||:\n______________UUUUUCCUUC_UU_UGUUAU\n3'-UUU...UAAGU__________A__C______ACCUC...ACG-5'\n_____________|____________________|\n_____________61___________________40\n |
187 -- 193 |
51 -- 57 |
-13.1224 kcal/mol |
1.37417 kcal/mol |
1.96633 kcal/mol |
183 204@LB@ | |@LB@5'-UAC...GCGAU A A AACAA...CGC-3'@LB@ AAGAAGGAAG AA AUAAUG@LB@ ||:||||||| || |:|||:@LB@ UUUUUCCUUC UU UGUUAU@LB@3'-UUU...UAAGU A C ACCUC...ACG-5'@LB@ | |@LB@ 61 40@LB@@LB@@LB@Energy -9.78 kcal/mol@LB@Hybridization Energy -13.1224 kcal/mol@LB@Unfolding Energy - mRNA 1.37417 kcal/mol@LB@Unfolding Energy - sRNA 1.96633 kcal/mol@LB@@LB@Position - mRNA 184 -- 203@LB@Position - sRNA 41 -- 60@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 51 -- 57@LB@ |
70 |
0.001371 |
0.06901 |
b2989 |
yghU |
-9.78 |
0.124117 |
251 -- 269 |
4 -- 23 |
putative S-transferase |
|
_____________250__________________270\n_____________|____________________|\n5'-UUA...AAAUC_________GC_________AAUAU...CGC-3'\n______________CGC_UGGCG__GCGUUCGCC\n______________|||_||:||__||:|||:||\n______________GCG_ACUGC__CGUAAGUGG\n3'-UUU...GGGUA___A_____AA_________ACG-5'\n_____________|____________________|\n_____________24___________________3\n |
263 -- 269 |
4 -- 10 |
-26.6155 kcal/mol |
8.73321 kcal/mol |
8.10973 kcal/mol |
250 270@LB@ | |@LB@5'-UUA...AAAUC GC AAUAU...CGC-3'@LB@ CGC UGGCG GCGUUCGCC@LB@ ||| ||:|| ||:|||:||@LB@ GCG ACUGC CGUAAGUGG@LB@3'-UUU...GGGUA A AA ACG-5'@LB@ | |@LB@ 24 3@LB@@LB@@LB@Energy -9.78 kcal/mol@LB@Hybridization Energy -26.6155 kcal/mol@LB@Unfolding Energy - mRNA 8.73321 kcal/mol@LB@Unfolding Energy - sRNA 8.10973 kcal/mol@LB@@LB@Position - mRNA 251 -- 269@LB@Position - sRNA 4 -- 23@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 4 -- 10@LB@ |
58 |
0.0009751 |
0.05816 |
b3809 |
dapF |
-9.70 |
0.129467 |
46 -- 52 |
1 -- 7 |
diaminopimelate epimerase |
|
_____________45______53\n_____________|_______|\n5'-UCU...UUUCC_______AGAUA...UGG-3'\n______________CGCCUGC\n______________|:|||||\n______________GUGGACG\n3'-UUU...CGUAA_______-5'\n_____________|______|\n_____________8______1\n |
46 -- 52 |
1 -- 7 |
-13.4276 kcal/mol |
1.39772 kcal/mol |
2.34039 kcal/mol |
45 53@LB@ | |@LB@5'-UCU...UUUCC AGAUA...UGG-3'@LB@ CGCCUGC@LB@ |:|||||@LB@ GUGGACG@LB@3'-UUU...CGUAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.70 kcal/mol@LB@Hybridization Energy -13.4276 kcal/mol@LB@Unfolding Energy - mRNA 1.39772 kcal/mol@LB@Unfolding Energy - sRNA 2.34039 kcal/mol@LB@@LB@Position - mRNA 46 -- 52@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 1 -- 7@LB@ |
183 |
0.007971 |
0.1528 |
b1874 |
cutC |
-9.62 |
0.134922 |
271 -- 300 |
54 -- 87 |
copper homeostasis protein |
|
_____________270________________________________300\n_____________|__________________________________|\n5'-CCG...AGACA_____G____A__________CCC___________-3'\n______________GAGUU_AAUU_UGC___GCAG_____CAAAAGAGG\n______________||:|:_||||_|||___||||_____|||||:|||\n______________CUUAG_UUAA_ACG___CGUC_____GUUUUUUCC\n3'-UUU...GCAUG__________C___AUA____AUUAA_________UUCAU...ACG-5'\n_____________|___________________________________|\n_____________88__________________________________53\n |
294 -- 300 |
54 -- 60 |
-18.7273 kcal/mol |
5.34866 kcal/mol |
3.76003 kcal/mol |
270 300@LB@ | |@LB@5'-CCG...AGACA G A CCC -3'@LB@ GAGUU AAUU UGC GCAG CAAAAGAGG@LB@ ||:|: |||| ||| |||| |||||:|||@LB@ CUUAG UUAA ACG CGUC GUUUUUUCC@LB@3'-UUU...GCAUG C AUA AUUAA UUCAU...ACG-5'@LB@ | |@LB@ 88 53@LB@@LB@@LB@Energy -9.62 kcal/mol@LB@Hybridization Energy -18.7273 kcal/mol@LB@Unfolding Energy - mRNA 5.34866 kcal/mol@LB@Unfolding Energy - sRNA 3.76003 kcal/mol@LB@@LB@Position - mRNA 271 -- 300@LB@Position - sRNA 54 -- 87@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 54 -- 60@LB@ |
76 |
0.001842 |
0.08273 |
b1717 |
rpmI |
-9.61 |
0.135308 |
218 -- 256 |
48 -- 92 |
50S ribosomal subunit protein L35 |
|
_____________217___________________________________________257\n_____________|_____________________________________________|\n5'-GCG...AAGAC_____________GC_____A___C____________ACC_____AGGUG...UGA-3'\n______________CGUACG___CGGU__UGCUA_GCG____UUCAAAAAA___GGUAA\n______________||||||___|::|__|||||_||:____|||||||||___:||||\n______________GCAUGC___GUUA__ACGAU_CGU____AAGUUUUUU___UCAUU\n3'-UUU...CCGCA______UUA____AC_____A___CAUU_________CCU_____CUGUU...ACG-5'\n_____________|_____________________________________________|\n_____________93____________________________________________47\n |
242 -- 248 |
56 -- 62 |
-26.2826 kcal/mol |
11.8203 kcal/mol |
4.85131 kcal/mol |
217 257@LB@ | |@LB@5'-GCG...AAGAC GC A C ACC AGGUG...UGA-3'@LB@ CGUACG CGGU UGCUA GCG UUCAAAAAA GGUAA@LB@ |||||| |::| ||||| ||: ||||||||| :||||@LB@ GCAUGC GUUA ACGAU CGU AAGUUUUUU UCAUU@LB@3'-UUU...CCGCA UUA AC A CAUU CCU CUGUU...ACG-5'@LB@ | |@LB@ 93 47@LB@@LB@@LB@Energy -9.61 kcal/mol@LB@Hybridization Energy -26.2826 kcal/mol@LB@Unfolding Energy - mRNA 11.8203 kcal/mol@LB@Unfolding Energy - sRNA 4.85131 kcal/mol@LB@@LB@Position - mRNA 218 -- 256@LB@Position - sRNA 48 -- 92@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 56 -- 62@LB@ |
178 |
0.007484 |
0.1481 |
b1243 |
oppA |
-9.58 |
0.138030 |
24 -- 34 |
81 -- 91 |
oligopeptide ABC transporter periplasmic binding protein |
|
_____________23__________35\n_____________|___________|\n5'-UGU...ACACA___________CAUAA...UCA-3'\n______________GUACGAAUCGA\n______________|||||||||:|\n______________CAUGCUUAGUU\n3'-UUU...CGCAG___________AACAC...ACG-5'\n_____________|___________|\n_____________92__________80\n |
28 -- 34 |
81 -- 87 |
-14.5847 kcal/mol |
2.82098 kcal/mol |
2.19089 kcal/mol |
23 35@LB@ | |@LB@5'-UGU...ACACA CAUAA...UCA-3'@LB@ GUACGAAUCGA@LB@ |||||||||:|@LB@ CAUGCUUAGUU@LB@3'-UUU...CGCAG AACAC...ACG-5'@LB@ | |@LB@ 92 80@LB@@LB@@LB@Energy -9.58 kcal/mol@LB@Hybridization Energy -14.5847 kcal/mol@LB@Unfolding Energy - mRNA 2.82098 kcal/mol@LB@Unfolding Energy - sRNA 2.19089 kcal/mol@LB@@LB@Position - mRNA 24 -- 34@LB@Position - sRNA 81 -- 91@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 81 -- 87@LB@ |
131 |
0.004841 |
0.1302 |
b3242 |
aaeX |
-9.57 |
0.138370 |
170 -- 176 |
1 -- 7 |
DUF1656 family putative inner membrane efflux pump associated protein |
|
_____________169_____177\n_____________|_______|\n5'-GCG...AAUAA_______UCUCU...GGG-3'\n______________CGCCUGC\n______________|:|||||\n______________GUGGACG\n3'-UUU...CGUAA_______-5'\n_____________|______|\n_____________8______1\n |
170 -- 176 |
1 -- 7 |
-12.9142 kcal/mol |
1.00865 kcal/mol |
2.34039 kcal/mol |
169 177@LB@ | |@LB@5'-GCG...AAUAA UCUCU...GGG-3'@LB@ CGCCUGC@LB@ |:|||||@LB@ GUGGACG@LB@3'-UUU...CGUAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.57 kcal/mol@LB@Hybridization Energy -12.9142 kcal/mol@LB@Unfolding Energy - mRNA 1.00865 kcal/mol@LB@Unfolding Energy - sRNA 2.34039 kcal/mol@LB@@LB@Position - mRNA 170 -- 176@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 1 -- 7@LB@ |
152 |
0.005935 |
0.1368 |
b2701 |
mltB |
-9.57 |
0.138424 |
83 -- 107 |
69 -- 92 |
membrane-bound lytic murein transglycosylase B |
|
_____________82________________________108\n_____________|_________________________|\n5'-AGA...GAUAG__AG_G____G_____A________AAGUC...GAA-3'\n______________CG__G_GAAU_AGUUG_GUUAUGUA\n______________||__:_||||_|:|||_|:||||:|\n______________GC__U_CUUA_UUAAC_CGAUACGU\n3'-UUU...CCGCA__A__G____G_____A________CAUUA...ACG-5'\n_____________|_________________________|\n_____________93________________________68\n |
101 -- 107 |
69 -- 75 |
-19.8359 kcal/mol |
5.60429 kcal/mol |
4.66371 kcal/mol |
82 108@LB@ | |@LB@5'-AGA...GAUAG AG G G A AAGUC...GAA-3'@LB@ CG G GAAU AGUUG GUUAUGUA@LB@ || : |||| |:||| |:||||:|@LB@ GC U CUUA UUAAC CGAUACGU@LB@3'-UUU...CCGCA A G G A CAUUA...ACG-5'@LB@ | |@LB@ 93 68@LB@@LB@@LB@Energy -9.57 kcal/mol@LB@Hybridization Energy -19.8359 kcal/mol@LB@Unfolding Energy - mRNA 5.60429 kcal/mol@LB@Unfolding Energy - sRNA 4.66371 kcal/mol@LB@@LB@Position - mRNA 83 -- 107@LB@Position - sRNA 69 -- 92@LB@Position Seed - mRNA 101 -- 107@LB@Position Seed - sRNA 69 -- 75@LB@ |
38 |
0.0003163 |
0.02889 |
b4315 |
fimI |
-9.52 |
0.141947 |
182 -- 216 |
45 -- 80 |
fimbrial protein involved in type 1 pilus biosynthesis |
|
_____________181___________________________________217\n_____________|_____________________________________|\n5'-UGC...CACCC______GAUAAAAAUAACGAU________________UAUUU...AAU-3'\n______________UUGUGC_______________GAAAAGGAAG__AGAU\n______________||||||_______________:|||||||||__|||:\n______________AACACG_______________UUUUUCCUUC__UCUG\n3'-UUU...UAGUU______AUACGUCAUUAAGU___________AU____UUAUA...ACG-5'\n_____________|_____________________________________|\n_____________81____________________________________44\n |
206 -- 212 |
51 -- 57 |
-20.4045 kcal/mol |
5.26447 kcal/mol |
5.61905 kcal/mol |
181 217@LB@ | |@LB@5'-UGC...CACCC GAUAAAAAUAACGAU UAUUU...AAU-3'@LB@ UUGUGC GAAAAGGAAG AGAU@LB@ |||||| :||||||||| |||:@LB@ AACACG UUUUUCCUUC UCUG@LB@3'-UUU...UAGUU AUACGUCAUUAAGU AU UUAUA...ACG-5'@LB@ | |@LB@ 81 44@LB@@LB@@LB@Energy -9.52 kcal/mol@LB@Hybridization Energy -20.4045 kcal/mol@LB@Unfolding Energy - mRNA 5.26447 kcal/mol@LB@Unfolding Energy - sRNA 5.61905 kcal/mol@LB@@LB@Position - mRNA 182 -- 216@LB@Position - sRNA 45 -- 80@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 51 -- 57@LB@ |
102 |
0.003332 |
0.1114 |
b1279 |
yciS |
-9.50 |
0.143375 |
3 -- 9 |
1 -- 7 |
DUF1049 family inner membrane protein function unknown |
|
_____________2_______10\n_____________|_______|\n_________5'-AC_______GGAAG...UGU-3'\n______________CACCUGC\n______________|||||||\n______________GUGGACG\n3'-UUU...CGUAA_______-5'\n_____________|______|\n_____________8______1\n |
3 -- 9 |
1 -- 7 |
-13.2462 kcal/mol |
1.40693 kcal/mol |
2.34039 kcal/mol |
2 10@LB@ | |@LB@ 5'-AC GGAAG...UGU-3'@LB@ CACCUGC@LB@ |||||||@LB@ GUGGACG@LB@3'-UUU...CGUAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.50 kcal/mol@LB@Hybridization Energy -13.2462 kcal/mol@LB@Unfolding Energy - mRNA 1.40693 kcal/mol@LB@Unfolding Energy - sRNA 2.34039 kcal/mol@LB@@LB@Position - mRNA 3 -- 9@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 3 -- 9@LB@Position Seed - sRNA 1 -- 7@LB@ |
145 |
0.00562 |
0.1365 |
b2532 |
trmJ |
-9.44 |
0.148020 |
215 -- 233 |
68 -- 84 |
tRNA mC32 mU32 2'-O-methyltransferase SAM-dependent |
|
_____________214_________________234\n_____________|___________________|\n5'-CGU...AAUAU__G__________G__G__ACGUC...UGU-3'\n______________UC_AAUUGUGCUG_UG_AG\n______________||_|||||||||:_||_||\n______________AG_UUAACACGAU_AC_UC\n3'-UUU...UGCUU________________G__AUUAA...ACG-5'\n_____________|___________________|\n_____________85__________________67\n |
221 -- 227 |
73 -- 79 |
-16.7979 kcal/mol |
3.71432 kcal/mol |
3.64047 kcal/mol |
214 234@LB@ | |@LB@5'-CGU...AAUAU G G G ACGUC...UGU-3'@LB@ UC AAUUGUGCUG UG AG@LB@ || |||||||||: || ||@LB@ AG UUAACACGAU AC UC@LB@3'-UUU...UGCUU G AUUAA...ACG-5'@LB@ | |@LB@ 85 67@LB@@LB@@LB@Energy -9.44 kcal/mol@LB@Hybridization Energy -16.7979 kcal/mol@LB@Unfolding Energy - mRNA 3.71432 kcal/mol@LB@Unfolding Energy - sRNA 3.64047 kcal/mol@LB@@LB@Position - mRNA 215 -- 233@LB@Position - sRNA 68 -- 84@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 73 -- 79@LB@ |
99 |
0.003254 |
0.1114 |
b2839 |
lysR |
-9.43 |
0.148712 |
276 -- 282 |
1 -- 7 |
transcriptional activator of lysA; autorepressor |
|
_____________275_____283\n_____________|_______|\n5'-GGC...CGGCA_______UACAC...CAA-3'\n______________CACCUGC\n______________|||||||\n______________GUGGACG\n3'-UUU...CGUAA_______-5'\n_____________|______|\n_____________8______1\n |
276 -- 282 |
1 -- 7 |
-13.2779 kcal/mol |
1.51062 kcal/mol |
2.34039 kcal/mol |
275 283@LB@ | |@LB@5'-GGC...CGGCA UACAC...CAA-3'@LB@ CACCUGC@LB@ |||||||@LB@ GUGGACG@LB@3'-UUU...CGUAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.43 kcal/mol@LB@Hybridization Energy -13.2779 kcal/mol@LB@Unfolding Energy - mRNA 1.51062 kcal/mol@LB@Unfolding Energy - sRNA 2.34039 kcal/mol@LB@@LB@Position - mRNA 276 -- 282@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 1 -- 7@LB@ |
130 |
0.00465 |
0.126 |
b2916 |
argP |
-9.43 |
0.148863 |
238 -- 266 |
47 -- 73 |
transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
|
_____________237___________________________267\n_____________|_____________________________|\n5'-GGC...ACUGG__________ACG____C_____UU____CGCGC...CAG-3'\n______________AUGCGGUGAU___UGAA_GAGGA__UGAG\n______________||||:||:||___::||_:||||__|:||\n______________UACGUCAUUA___GUUU_UUCCU__AUUC\n3'-UUU...CACGA__________A______U_____UC____UGUUA...ACG-5'\n_____________|_____________________________|\n_____________74____________________________46\n |
240 -- 246 |
65 -- 71 |
-19.9139 kcal/mol |
5.97985 kcal/mol |
4.50495 kcal/mol |
237 267@LB@ | |@LB@5'-GGC...ACUGG ACG C UU CGCGC...CAG-3'@LB@ AUGCGGUGAU UGAA GAGGA UGAG@LB@ ||||:||:|| ::|| :|||| |:||@LB@ UACGUCAUUA GUUU UUCCU AUUC@LB@3'-UUU...CACGA A U UC UGUUA...ACG-5'@LB@ | |@LB@ 74 46@LB@@LB@@LB@Energy -9.43 kcal/mol@LB@Hybridization Energy -19.9139 kcal/mol@LB@Unfolding Energy - mRNA 5.97985 kcal/mol@LB@Unfolding Energy - sRNA 4.50495 kcal/mol@LB@@LB@Position - mRNA 238 -- 266@LB@Position - sRNA 47 -- 73@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 65 -- 71@LB@ |
186 |
0.008102 |
0.1535 |
b1768 |
pncA |
-9.42 |
0.149628 |
191 -- 212 |
21 -- 39 |
nicotinamidase/pyrazinamidase |
|
_____________190____________________213\n_____________|______________________|\n5'-UAA...AUUAA____A_U_________CC____GCCCU...CUA-3'\n______________GGAG_C_GUAAUGCCC__UCGC\n______________||||_|_|:||:||||__||||\n______________CCUC_G_CGUUGCGGG__AGCG\n3'-UUU...UUAUA________________U_____AACUG...ACG-5'\n_____________|______________________|\n_____________40_____________________20\n |
200 -- 206 |
26 -- 32 |
-26.7187 kcal/mol |
5.14291 kcal/mol |
12.1569 kcal/mol |
190 213@LB@ | |@LB@5'-UAA...AUUAA A U CC GCCCU...CUA-3'@LB@ GGAG C GUAAUGCCC UCGC@LB@ |||| | |:||:|||| ||||@LB@ CCUC G CGUUGCGGG AGCG@LB@3'-UUU...UUAUA U AACUG...ACG-5'@LB@ | |@LB@ 40 20@LB@@LB@@LB@Energy -9.42 kcal/mol@LB@Hybridization Energy -26.7187 kcal/mol@LB@Unfolding Energy - mRNA 5.14291 kcal/mol@LB@Unfolding Energy - sRNA 12.1569 kcal/mol@LB@@LB@Position - mRNA 191 -- 212@LB@Position - sRNA 21 -- 39@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 26 -- 32@LB@ |
61 |
0.001027 |
0.05816 |
b0443 |
fadM |
-9.40 |
0.151451 |
193 -- 205 |
69 -- 81 |
long-chain acyl-CoA thioesterase III |
|
_____________192___________206\n_____________|_____________|\n5'-GUU...AGGUU____C________AACAC...AUG-3'\n______________AUUG_GCUAUGCA\n______________||||_||||||||\n______________UAAC_CGAUACGU\n3'-UUU...UUAGU____A________CAUUA...ACG-5'\n_____________|_____________|\n_____________82____________68\n |
199 -- 205 |
69 -- 75 |
-15.9471 kcal/mol |
4.72824 kcal/mol |
1.82028 kcal/mol |
192 206@LB@ | |@LB@5'-GUU...AGGUU C AACAC...AUG-3'@LB@ AUUG GCUAUGCA@LB@ |||| ||||||||@LB@ UAAC CGAUACGU@LB@3'-UUU...UUAGU A CAUUA...ACG-5'@LB@ | |@LB@ 82 68@LB@@LB@@LB@Energy -9.40 kcal/mol@LB@Hybridization Energy -15.9471 kcal/mol@LB@Unfolding Energy - mRNA 4.72824 kcal/mol@LB@Unfolding Energy - sRNA 1.82028 kcal/mol@LB@@LB@Position - mRNA 193 -- 205@LB@Position - sRNA 69 -- 81@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 69 -- 75@LB@ |
39 |
0.0003198 |
0.02889 |
b3960 |
argH |
-9.38 |
0.152930 |
179 -- 221 |
28 -- 64 |
argininosuccinate lyase |
|
_____________178__________________________________________222\n_____________|____________________________________________|\n5'-GCA...UGAAU_______U_____AACAG___UAU____CUU_____________UUUAC...AUA-3'\n______________UUCAAAA_AAGGA_____AGU___GGCA___UGGGGCG_GGCGU\n______________|||||||_|||||_____|||___|:||___|||:|||_::||:\n______________AAGUUUU_UUCCU_____UCA___CUGU___ACCUCGC_UUGCG\n3'-UUU...UCAUU_____________________UU_____UAU_______G_____GGUAG...ACG-5'\n_____________|____________________________________________|\n_____________65___________________________________________27\n |
210 -- 216 |
34 -- 40 |
-30.4591 kcal/mol |
8.02766 kcal/mol |
13.054 kcal/mol |
178 222@LB@ | |@LB@5'-GCA...UGAAU U AACAG UAU CUU UUUAC...AUA-3'@LB@ UUCAAAA AAGGA AGU GGCA UGGGGCG GGCGU@LB@ ||||||| ||||| ||| |:|| |||:||| ::||:@LB@ AAGUUUU UUCCU UCA CUGU ACCUCGC UUGCG@LB@3'-UUU...UCAUU UU UAU G GGUAG...ACG-5'@LB@ | |@LB@ 65 27@LB@@LB@@LB@Energy -9.38 kcal/mol@LB@Hybridization Energy -30.4591 kcal/mol@LB@Unfolding Energy - mRNA 8.02766 kcal/mol@LB@Unfolding Energy - sRNA 13.054 kcal/mol@LB@@LB@Position - mRNA 179 -- 221@LB@Position - sRNA 28 -- 64@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 34 -- 40@LB@ |
174 |
0.007207 |
0.145 |
b1034 |
ycdX |
-9.36 |
0.154134 |
94 -- 120 |
35 -- 63 |
alkaline phosphatase |
|
_____________93_____________________________121\n_____________|______________________________|\n5'-GGC...CCAGC__________________G___C__C____AAGUC...AAC-3'\n______________UCGAAAAAGGG___GAGA_GGU_UG_GGGC\n______________||:|||||||:___:|||_::|_||_|:||\n______________AGUUUUUUCCU___UUCU_UUA_AC_CUCG\n3'-UUU...CAUUA___________UCA____G___U_______CGUUG...ACG-5'\n_____________|______________________________|\n_____________64_____________________________34\n |
98 -- 104 |
53 -- 59 |
-21.9855 kcal/mol |
6.52956 kcal/mol |
6.08557 kcal/mol |
93 121@LB@ | |@LB@5'-GGC...CCAGC G C C AAGUC...AAC-3'@LB@ UCGAAAAAGGG GAGA GGU UG GGGC@LB@ ||:|||||||: :||| ::| || |:||@LB@ AGUUUUUUCCU UUCU UUA AC CUCG@LB@3'-UUU...CAUUA UCA G U CGUUG...ACG-5'@LB@ | |@LB@ 64 34@LB@@LB@@LB@Energy -9.36 kcal/mol@LB@Hybridization Energy -21.9855 kcal/mol@LB@Unfolding Energy - mRNA 6.52956 kcal/mol@LB@Unfolding Energy - sRNA 6.08557 kcal/mol@LB@@LB@Position - mRNA 94 -- 120@LB@Position - sRNA 35 -- 63@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 53 -- 59@LB@ |
128 |
0.004569 |
0.1258 |
b3033 |
yqiB |
-9.35 |
0.155553 |
90 -- 130 |
43 -- 87 |
DUF1249 protein YqiB |
|
_____________89_____________________________________________131\n_____________|______________________________________________|\n5'-UGG...GCCGG_____________AUAC______GUA__________AAAUC_____CGCAG...GCG-3'\n______________GAA_CAG____GC____CAGUGG___GAAGAGGGGA_____GACAA\n______________|||_||:____||____||||::___:||:|:||:|_____|||||\n______________CUU_GUU____CG____GUCAUU___UUUUUUCCUU_____CUGUU\n3'-UUU...GCAUG___A___AACA__AUAC______AAG__________CAUU______AUACC...ACG-5'\n_____________|______________________________________________|\n_____________88_____________________________________________42\n |
114 -- 120 |
52 -- 58 |
-22.1335 kcal/mol |
7.07839 kcal/mol |
5.71172 kcal/mol |
89 131@LB@ | |@LB@5'-UGG...GCCGG AUAC GUA AAAUC CGCAG...GCG-3'@LB@ GAA CAG GC CAGUGG GAAGAGGGGA GACAA@LB@ ||| ||: || ||||:: :||:|:||:| |||||@LB@ CUU GUU CG GUCAUU UUUUUUCCUU CUGUU@LB@3'-UUU...GCAUG A AACA AUAC AAG CAUU AUACC...ACG-5'@LB@ | |@LB@ 88 42@LB@@LB@@LB@Energy -9.35 kcal/mol@LB@Hybridization Energy -22.1335 kcal/mol@LB@Unfolding Energy - mRNA 7.07839 kcal/mol@LB@Unfolding Energy - sRNA 5.71172 kcal/mol@LB@@LB@Position - mRNA 90 -- 130@LB@Position - sRNA 43 -- 87@LB@Position Seed - mRNA 114 -- 120@LB@Position Seed - sRNA 52 -- 58@LB@ |
157 |
0.006139 |
0.1377 |
b2347 |
yfdC |
-9.29 |
0.160067 |
171 -- 205 |
37 -- 76 |
putative inner membrane protein |
|
_____________170________________________________________206\n_____________|__________________________________________|\n5'-GCA...CUUUA_____AC___C_______________________C_______CAACG...UCC-3'\n______________GCUAU__GUG_UAAUUCAAGA___GAAG__AGAC___AUGGA\n______________|||||__|::_||||||||:|___||||__||||___|||||\n______________CGAUA__CGU_AUUAAGUUUU___CUUC__UCUG___UACCU\n3'-UUU...UAACA__________C__________UUC____AU____UUA_____CGCGU...ACG-5'\n_____________|__________________________________________|\n_____________77_________________________________________36\n |
185 -- 191 |
58 -- 64 |
-24.5838 kcal/mol |
7.63937 kcal/mol |
7.64142 kcal/mol |
170 206@LB@ | |@LB@5'-GCA...CUUUA AC C C CAACG...UCC-3'@LB@ GCUAU GUG UAAUUCAAGA GAAG AGAC AUGGA@LB@ ||||| |:: ||||||||:| |||| |||| |||||@LB@ CGAUA CGU AUUAAGUUUU CUUC UCUG UACCU@LB@3'-UUU...UAACA C UUC AU UUA CGCGU...ACG-5'@LB@ | |@LB@ 77 36@LB@@LB@@LB@Energy -9.29 kcal/mol@LB@Hybridization Energy -24.5838 kcal/mol@LB@Unfolding Energy - mRNA 7.63937 kcal/mol@LB@Unfolding Energy - sRNA 7.64142 kcal/mol@LB@@LB@Position - mRNA 171 -- 205@LB@Position - sRNA 37 -- 76@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 58 -- 64@LB@ |
98 |
0.003129 |
0.1114 |
b0357 |
frmR |
-9.19 |
0.168108 |
184 -- 207 |
25 -- 48 |
regulator protein that represses frmRAB operon |
|
_____________183______________________208\n_____________|________________________|\n5'-CUG...CAUGC________A__U___AA_______GUACU...CCG-3'\n______________AGAUGAUG_GG_GCG__AUGCCCA\n______________|||::||:_||_|||__|:|||||\n______________UCUGUUAU_CC_CGC__UGCGGGU\n3'-UUU...UUCAU________A__U___GU_______AGCGA...ACG-5'\n_____________|________________________|\n_____________49_______________________24\n |
201 -- 207 |
25 -- 31 |
-27.7971 kcal/mol |
6.33291 kcal/mol |
12.271 kcal/mol |
183 208@LB@ | |@LB@5'-CUG...CAUGC A U AA GUACU...CCG-3'@LB@ AGAUGAUG GG GCG AUGCCCA@LB@ |||::||: || ||| |:|||||@LB@ UCUGUUAU CC CGC UGCGGGU@LB@3'-UUU...UUCAU A U GU AGCGA...ACG-5'@LB@ | |@LB@ 49 24@LB@@LB@@LB@Energy -9.19 kcal/mol@LB@Hybridization Energy -27.7971 kcal/mol@LB@Unfolding Energy - mRNA 6.33291 kcal/mol@LB@Unfolding Energy - sRNA 12.271 kcal/mol@LB@@LB@Position - mRNA 184 -- 207@LB@Position - sRNA 25 -- 48@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 25 -- 31@LB@ |
156 |
0.006066 |
0.137 |
b0005 |
yaaX |
-9.16 |
0.170742 |
96 -- 118 |
53 -- 73 |
DUF2502 family putative periplasmic protein |
b2390 |
_____________95______________________119\n_____________|_______________________|\n5'-UCU...AAUAA_________C_______UU____UUGCG...AAU-3'\n______________AUGCGGUAA_UUAGAGA__AGGA\n______________||||:||||_|:|:|:|__||||\n______________UACGUCAUU_AGUUUUU__UCCU\n3'-UUU...CACGA_________A_____________UCAUU...ACG-5'\n_____________|_______________________|\n_____________74______________________52\n |
98 -- 104 |
65 -- 71 |
-18.9701 kcal/mol |
6.27714 kcal/mol |
3.52907 kcal/mol |
95 119@LB@ | |@LB@5'-UCU...AAUAA C UU UUGCG...AAU-3'@LB@ AUGCGGUAA UUAGAGA AGGA@LB@ ||||:|||| |:|:|:| ||||@LB@ UACGUCAUU AGUUUUU UCCU@LB@3'-UUU...CACGA A UCAUU...ACG-5'@LB@ | |@LB@ 74 52@LB@@LB@@LB@Energy -9.16 kcal/mol@LB@Hybridization Energy -18.9701 kcal/mol@LB@Unfolding Energy - mRNA 6.27714 kcal/mol@LB@Unfolding Energy - sRNA 3.52907 kcal/mol@LB@@LB@Position - mRNA 96 -- 118@LB@Position - sRNA 53 -- 73@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 65 -- 71@LB@ |
139 |
0.00529 |
0.1336 |
b3211 |
yhcC |
-9.14 |
0.172713 |
199 -- 227 |
39 -- 75 |
putative Fe-S oxidoreductase Radical SAM superfamily protein |
|
_____________198___________________________________228\n_____________|_____________________________________|\n5'-UGC...UCAGA_________UA________UU________U_______UUUGG...GCC-3'\n______________UUAUGCAGU____CAGAAA________AG_CAAUAUG\n______________:||||||||____||:|||________||_|||||||\n______________GAUACGUCA____GUUUUU________UC_GUUAUAC\n3'-UUU...AACAC_________UUAA______UCCUUCAU__U_______CUCGC...ACG-5'\n_____________|_____________________________________|\n_____________76____________________________________38\n |
221 -- 227 |
39 -- 45 |
-19.1659 kcal/mol |
3.3824 kcal/mol |
6.6377 kcal/mol |
198 228@LB@ | |@LB@5'-UGC...UCAGA UA UU U UUUGG...GCC-3'@LB@ UUAUGCAGU CAGAAA AG CAAUAUG@LB@ :|||||||| ||:||| || |||||||@LB@ GAUACGUCA GUUUUU UC GUUAUAC@LB@3'-UUU...AACAC UUAA UCCUUCAU U CUCGC...ACG-5'@LB@ | |@LB@ 76 38@LB@@LB@@LB@Energy -9.14 kcal/mol@LB@Hybridization Energy -19.1659 kcal/mol@LB@Unfolding Energy - mRNA 3.3824 kcal/mol@LB@Unfolding Energy - sRNA 6.6377 kcal/mol@LB@@LB@Position - mRNA 199 -- 227@LB@Position - sRNA 39 -- 75@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 39 -- 45@LB@ |
119 |
0.004048 |
0.119 |
b3607 |
cysE |
-9.06 |
0.179616 |
191 -- 204 |
40 -- 54 |
serine acetyltransferase |
|
_____________190_____________205\n_____________|_______________|\n5'-CGG...CGUGU_______________CGUGU...CGA-3'\n______________GGAGUAAG_CAAUGU\n______________|:||||||_||||:|\n______________CUUCAUUC_GUUAUA\n3'-UUU...UUUUC________U______CCUCG...ACG-5'\n_____________|_______________|\n_____________55______________39\n |
192 -- 198 |
47 -- 53 |
-13.6491 kcal/mol |
2.75521 kcal/mol |
1.82942 kcal/mol |
190 205@LB@ | |@LB@5'-CGG...CGUGU CGUGU...CGA-3'@LB@ GGAGUAAG CAAUGU@LB@ |:|||||| ||||:|@LB@ CUUCAUUC GUUAUA@LB@3'-UUU...UUUUC U CCUCG...ACG-5'@LB@ | |@LB@ 55 39@LB@@LB@@LB@Energy -9.06 kcal/mol@LB@Hybridization Energy -13.6491 kcal/mol@LB@Unfolding Energy - mRNA 2.75521 kcal/mol@LB@Unfolding Energy - sRNA 1.82942 kcal/mol@LB@@LB@Position - mRNA 191 -- 204@LB@Position - sRNA 40 -- 54@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 47 -- 53@LB@ |
60 |
0.001013 |
0.05816 |
b2207 |
napD |
-8.99 |
0.186283 |
27 -- 46 |
75 -- 92 |
assembly protein for periplasmic nitrate reductase |
|
_____________26___________________47\n_____________|____________________|\n5'-GUU...CCUGG_____C_________AA___CGCCG...AAG-3'\n______________CGUAU_AGUCAGUUG__UGC\n______________||||:_|:|||:|||__|||\n______________GCAUG_UUAGUUAAC__ACG\n3'-UUU...CCGCA_____C______________AUACG...ACG-5'\n_____________|____________________|\n_____________93___________________74\n |
35 -- 41 |
78 -- 84 |
-16.0375 kcal/mol |
4.6767 kcal/mol |
2.37539 kcal/mol |
26 47@LB@ | |@LB@5'-GUU...CCUGG C AA CGCCG...AAG-3'@LB@ CGUAU AGUCAGUUG UGC@LB@ ||||: |:|||:||| |||@LB@ GCAUG UUAGUUAAC ACG@LB@3'-UUU...CCGCA C AUACG...ACG-5'@LB@ | |@LB@ 93 74@LB@@LB@@LB@Energy -8.99 kcal/mol@LB@Hybridization Energy -16.0375 kcal/mol@LB@Unfolding Energy - mRNA 4.6767 kcal/mol@LB@Unfolding Energy - sRNA 2.37539 kcal/mol@LB@@LB@Position - mRNA 27 -- 46@LB@Position - sRNA 75 -- 92@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 78 -- 84@LB@ |
31 |
0.0001757 |
0.01997 |
b4222 |
ytfP |
-8.86 |
0.198985 |
202 -- 224 |
67 -- 90 |
GGCT-like protein |
|
_____________201_______________________225\n_____________|_________________________|\n5'-ACC...AGCAA_______AU_________CG_____UUACG...ACC-3'\n______________UGCGAAU___UUGU_CUA__GCAGU\n______________|:|||||___||||_|||__|||||\n______________AUGCUUA___AACA_GAU__CGUCA\n3'-UUU...GCAGC_______GUU____C___A______UUAAG...ACG-5'\n_____________|_________________________|\n_____________91________________________66\n |
202 -- 208 |
84 -- 90 |
-18.173 kcal/mol |
4.78992 kcal/mol |
4.5307 kcal/mol |
201 225@LB@ | |@LB@5'-ACC...AGCAA AU CG UUACG...ACC-3'@LB@ UGCGAAU UUGU CUA GCAGU@LB@ |:||||| |||| ||| |||||@LB@ AUGCUUA AACA GAU CGUCA@LB@3'-UUU...GCAGC GUU C A UUAAG...ACG-5'@LB@ | |@LB@ 91 66@LB@@LB@@LB@Energy -8.86 kcal/mol@LB@Hybridization Energy -18.173 kcal/mol@LB@Unfolding Energy - mRNA 4.78992 kcal/mol@LB@Unfolding Energy - sRNA 4.5307 kcal/mol@LB@@LB@Position - mRNA 202 -- 224@LB@Position - sRNA 67 -- 90@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 84 -- 90@LB@ |
49 |
0.0005476 |
0.03937 |
b2432 |
yfeY |
-8.84 |
0.200409 |
189 -- 199 |
48 -- 58 |
RpoE-regulated lipoprotein |
|
_____________188_________200\n_____________|___________|\n5'-GCU...UAACC___________CAUGA...ACU-3'\n______________AAAGGAAGUGA\n______________|||||||||:|\n______________UUUCCUUCAUU\n3'-UUU...AGUUU___________CUGUU...ACG-5'\n_____________|___________|\n_____________59__________47\n |
193 -- 199 |
48 -- 54 |
-12.8959 kcal/mol |
3.31176 kcal/mol |
0.745549 kcal/mol |
188 200@LB@ | |@LB@5'-GCU...UAACC CAUGA...ACU-3'@LB@ AAAGGAAGUGA@LB@ |||||||||:|@LB@ UUUCCUUCAUU@LB@3'-UUU...AGUUU CUGUU...ACG-5'@LB@ | |@LB@ 59 47@LB@@LB@@LB@Energy -8.84 kcal/mol@LB@Hybridization Energy -12.8959 kcal/mol@LB@Unfolding Energy - mRNA 3.31176 kcal/mol@LB@Unfolding Energy - sRNA 0.745549 kcal/mol@LB@@LB@Position - mRNA 189 -- 199@LB@Position - sRNA 48 -- 58@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 48 -- 54@LB@ |
181 |
0.007702 |
0.1499 |
b3145 |
yraK |
-8.82 |
0.202558 |
266 -- 280 |
35 -- 49 |
putative fimbrial-like adhesin protein |
b0533 b0941 |
_____________265_____________281\n_____________|_______________|\n5'-CGA...UCCUC____G__________CGACA...CGA-3'\n______________AGGA_GGUGUGGAGC\n______________|:||_::|:||||||\n______________UUCU_UUAUACCUCG\n3'-UUU...CUUCA____G__________CGUUG...ACG-5'\n_____________|_______________|\n_____________50______________34\n |
274 -- 280 |
35 -- 41 |
-19.5909 kcal/mol |
7.00879 kcal/mol |
3.74396 kcal/mol |
265 281@LB@ | |@LB@5'-CGA...UCCUC G CGACA...CGA-3'@LB@ AGGA GGUGUGGAGC@LB@ |:|| ::|:||||||@LB@ UUCU UUAUACCUCG@LB@3'-UUU...CUUCA G CGUUG...ACG-5'@LB@ | |@LB@ 50 34@LB@@LB@@LB@Energy -8.82 kcal/mol@LB@Hybridization Energy -19.5909 kcal/mol@LB@Unfolding Energy - mRNA 7.00879 kcal/mol@LB@Unfolding Energy - sRNA 3.74396 kcal/mol@LB@@LB@Position - mRNA 266 -- 280@LB@Position - sRNA 35 -- 49@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 35 -- 41@LB@ |
191 |
0.008524 |
0.1548 |
b3203 |
hpf |
-8.75 |
0.209451 |
199 -- 206 |
68 -- 75 |
ribosome hibernation promoting factor HPF; stabilizes 100S dimers |
|
_____________198______207\n_____________|________|\n5'-GAU...AGACA________CUCAA...GAA-3'\n______________CUAUGCAG\n______________||||||||\n______________GAUACGUC\n3'-UUU...AACAC________AUUAA...ACG-5'\n_____________|________|\n_____________76_______67\n |
200 -- 206 |
68 -- 74 |
-11.4515 kcal/mol |
0.966058 kcal/mol |
1.73443 kcal/mol |
198 207@LB@ | |@LB@5'-GAU...AGACA CUCAA...GAA-3'@LB@ CUAUGCAG@LB@ ||||||||@LB@ GAUACGUC@LB@3'-UUU...AACAC AUUAA...ACG-5'@LB@ | |@LB@ 76 67@LB@@LB@@LB@Energy -8.75 kcal/mol@LB@Hybridization Energy -11.4515 kcal/mol@LB@Unfolding Energy - mRNA 0.966058 kcal/mol@LB@Unfolding Energy - sRNA 1.73443 kcal/mol@LB@@LB@Position - mRNA 199 -- 206@LB@Position - sRNA 68 -- 75@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 68 -- 74@LB@ |
74 |
0.001758 |
0.08273 |
b4012 |
yjaB |
-8.69 |
0.215298 |
234 -- 243 |
51 -- 60 |
GNAT-family putative N-acetyltransferase; acetyl coenzyme A-binding protein |
|
_____________233________244\n_____________|__________|\n5'-AAG...AUGAG__________AACUC...CAG-3'\n______________GAAGGGGAGG\n______________:||::|||:|\n______________UUUUUCCUUC\n3'-UUU...UAAGU__________AUUCU...ACG-5'\n_____________|__________|\n_____________61_________50\n |
237 -- 243 |
51 -- 57 |
-10.2171 kcal/mol |
0.810771 kcal/mol |
0.715621 kcal/mol |
233 244@LB@ | |@LB@5'-AAG...AUGAG AACUC...CAG-3'@LB@ GAAGGGGAGG@LB@ :||::|||:|@LB@ UUUUUCCUUC@LB@3'-UUU...UAAGU AUUCU...ACG-5'@LB@ | |@LB@ 61 50@LB@@LB@@LB@Energy -8.69 kcal/mol@LB@Hybridization Energy -10.2171 kcal/mol@LB@Unfolding Energy - mRNA 0.810771 kcal/mol@LB@Unfolding Energy - sRNA 0.715621 kcal/mol@LB@@LB@Position - mRNA 234 -- 243@LB@Position - sRNA 51 -- 60@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 51 -- 57@LB@ |
127 |
0.004567 |
0.1258 |
b2320 |
pdxB |
-8.62 |
0.223386 |
291 -- 299 |
20 -- 28 |
erythronate-4-phosphate dehydrogenase |
|
_____________290_______300\n_____________|_________|\n5'-ACG...CAAUC_________C-3'\n______________CCCGUCGCU\n______________|||:|||||\n______________GGGUAGCGA\n3'-UUU...GUUGC_________ACUGC...ACG-5'\n_____________|_________|\n_____________29________19\n |
293 -- 299 |
20 -- 26 |
-15.7186 kcal/mol |
1.54056 kcal/mol |
5.56153 kcal/mol |
290 300@LB@ | |@LB@5'-ACG...CAAUC C-3'@LB@ CCCGUCGCU@LB@ |||:|||||@LB@ GGGUAGCGA@LB@3'-UUU...GUUGC ACUGC...ACG-5'@LB@ | |@LB@ 29 19@LB@@LB@@LB@Energy -8.62 kcal/mol@LB@Hybridization Energy -15.7186 kcal/mol@LB@Unfolding Energy - mRNA 1.54056 kcal/mol@LB@Unfolding Energy - sRNA 5.56153 kcal/mol@LB@@LB@Position - mRNA 291 -- 299@LB@Position - sRNA 20 -- 28@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 20 -- 26@LB@ |
187 |
0.008226 |
0.1545 |
b1446 |
ydcY |
-8.50 |
0.236240 |
3 -- 9 |
2 -- 8 |
DUF2526 family protein |
|
_____________2_______10\n_____________|_______|\n_________5'-UA_______GUUUC...ACG-3'\n______________UCACCUG\n______________|||||||\n______________AGUGGAC\n3'-UUU...ACGUA_______G-5'\n_____________|_______|\n_____________9_______1\n |
3 -- 9 |
2 -- 8 |
-11.529 kcal/mol |
0.673638 kcal/mol |
2.36182 kcal/mol |
2 10@LB@ | |@LB@ 5'-UA GUUUC...ACG-3'@LB@ UCACCUG@LB@ |||||||@LB@ AGUGGAC@LB@3'-UUU...ACGUA G-5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -8.50 kcal/mol@LB@Hybridization Energy -11.529 kcal/mol@LB@Unfolding Energy - mRNA 0.673638 kcal/mol@LB@Unfolding Energy - sRNA 2.36182 kcal/mol@LB@@LB@Position - mRNA 3 -- 9@LB@Position - sRNA 2 -- 8@LB@Position Seed - mRNA 3 -- 9@LB@Position Seed - sRNA 2 -- 8@LB@ |
114 |
0.00366 |
0.1131 |
b0162 |
cdaR |
-8.46 |
0.240590 |
33 -- 47 |
64 -- 77 |
carbohydrate diacid regulon transcriptional regulator; autoregulator |
|
_____________32______________48\n_____________|_______________|\n5'-CAA...CUACC____A__________CUCCC...GGC-3'\n______________UGUU_AUGCAGUAAU\n______________||:|_||||||||||\n______________ACGA_UACGUCAUUA\n3'-UUU...UUAAC_______________AGUUU...ACG-5'\n_____________|_______________|\n_____________78______________63\n |
41 -- 47 |
64 -- 70 |
-14.8052 kcal/mol |
3.39589 kcal/mol |
2.94867 kcal/mol |
32 48@LB@ | |@LB@5'-CAA...CUACC A CUCCC...GGC-3'@LB@ UGUU AUGCAGUAAU@LB@ ||:| ||||||||||@LB@ ACGA UACGUCAUUA@LB@3'-UUU...UUAAC AGUUU...ACG-5'@LB@ | |@LB@ 78 63@LB@@LB@@LB@Energy -8.46 kcal/mol@LB@Hybridization Energy -14.8052 kcal/mol@LB@Unfolding Energy - mRNA 3.39589 kcal/mol@LB@Unfolding Energy - sRNA 2.94867 kcal/mol@LB@@LB@Position - mRNA 33 -- 47@LB@Position - sRNA 64 -- 77@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 64 -- 70@LB@ |
115 |
0.003699 |
0.1133 |
b3343 |
tusB |
-8.43 |
0.243717 |
216 -- 222 |
20 -- 26 |
mnm(5)-s(2)U34-tRNA synthesis 2-thiolation protein |
|
_____________215_____223\n_____________|_______|\n5'-GCU...CAUUA_______CACCC...GCG-3'\n______________CAUCGCU\n______________|||||||\n______________GUAGCGA\n3'-UUU...UGCGG_______ACUGC...ACG-5'\n_____________|_______|\n_____________27______19\n |
216 -- 222 |
20 -- 26 |
-9.55221 kcal/mol |
1.0434 kcal/mol |
0.0768517 kcal/mol |
215 223@LB@ | |@LB@5'-GCU...CAUUA CACCC...GCG-3'@LB@ CAUCGCU@LB@ |||||||@LB@ GUAGCGA@LB@3'-UUU...UGCGG ACUGC...ACG-5'@LB@ | |@LB@ 27 19@LB@@LB@@LB@Energy -8.43 kcal/mol@LB@Hybridization Energy -9.55221 kcal/mol@LB@Unfolding Energy - mRNA 1.0434 kcal/mol@LB@Unfolding Energy - sRNA 0.0768517 kcal/mol@LB@@LB@Position - mRNA 216 -- 222@LB@Position - sRNA 20 -- 26@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 20 -- 26@LB@ |
73 |
0.001571 |
0.0758 |
b3746 |
ravA |
-8.41 |
0.246327 |
240 -- 262 |
54 -- 75 |
hexameric AAA+ MoxR family ATPase putative molecular chaperone |
|
_____________239_____________________263\n_____________|_______________________|\n5'-UGA...CCCGC___A_____UC___G________GCUUU...UAU-3'\n______________CUG_GCAGU__GUU_GAAAAGGG\n______________||:_|||||__:||_:||||:||\n______________GAU_CGUCA__UAA_UUUUUUCC\n3'-UUU...AACAC___A_____U____G________UUCAU...ACG-5'\n_____________|_______________________|\n_____________76______________________53\n |
256 -- 262 |
54 -- 60 |
-19.2007 kcal/mol |
7.09588 kcal/mol |
3.69534 kcal/mol |
239 263@LB@ | |@LB@5'-UGA...CCCGC A UC G GCUUU...UAU-3'@LB@ CUG GCAGU GUU GAAAAGGG@LB@ ||: ||||| :|| :||||:||@LB@ GAU CGUCA UAA UUUUUUCC@LB@3'-UUU...AACAC A U G UUCAU...ACG-5'@LB@ | |@LB@ 76 53@LB@@LB@@LB@Energy -8.41 kcal/mol@LB@Hybridization Energy -19.2007 kcal/mol@LB@Unfolding Energy - mRNA 7.09588 kcal/mol@LB@Unfolding Energy - sRNA 3.69534 kcal/mol@LB@@LB@Position - mRNA 240 -- 262@LB@Position - sRNA 54 -- 75@LB@Position Seed - mRNA 256 -- 262@LB@Position Seed - sRNA 54 -- 60@LB@ |
170 |
0.006792 |
0.1407 |
b1884 |
cheR |
-8.41 |
0.246459 |
6 -- 26 |
68 -- 89 |
chemotaxis regulator protein-glutamate methyltransferase |
|
_____________5_______________________27\n_____________|_______________________|\n______5'-GCCAG______________A__CA____AACGC...UGA-3'\n______________AUGGAUCAG__GUG_CU__GCAG\n______________|:|:||||:__|||_||__||||\n______________UGCUUAGUU__CAC_GA__CGUC\n3'-UUU...CAGCA_________AA______UA____AUUAA...ACG-5'\n_____________|_______________________|\n_____________90______________________67\n |
8 -- 14 |
81 -- 87 |
-16.9281 kcal/mol |
4.01768 kcal/mol |
4.506 kcal/mol |
5 27@LB@ | |@LB@ 5'-GCCAG A CA AACGC...UGA-3'@LB@ AUGGAUCAG GUG CU GCAG@LB@ |:|:||||: ||| || ||||@LB@ UGCUUAGUU CAC GA CGUC@LB@3'-UUU...CAGCA AA UA AUUAA...ACG-5'@LB@ | |@LB@ 90 67@LB@@LB@@LB@Energy -8.41 kcal/mol@LB@Hybridization Energy -16.9281 kcal/mol@LB@Unfolding Energy - mRNA 4.01768 kcal/mol@LB@Unfolding Energy - sRNA 4.506 kcal/mol@LB@@LB@Position - mRNA 6 -- 26@LB@Position - sRNA 68 -- 89@LB@Position Seed - mRNA 8 -- 14@LB@Position Seed - sRNA 81 -- 87@LB@ |
179 |
0.007631 |
0.1495 |
b3229 |
sspA |
-8.36 |
0.252415 |
276 -- 298 |
54 -- 83 |
stringent starvation protein A phage P1 late gene activator RNAP-associated acid-resistance protein inactive glutathione S-transferase homolog |
|
_____________275_____________________________299\n_____________|_______________________________|\n5'-CCA...AGGUC__C____________________________UG-3'\n______________CG_AUUGUGCUG_GC_______UGAGAAAGG\n______________|:_||||||||:_||_______::|:|||||\n______________GU_UAACACGAU_CG_______GUUUUUUCC\n3'-UUU...GCUUA____________A__UCAUUAA_________UUCAU...ACG-5'\n_____________|_______________________________|\n_____________84______________________________53\n |
292 -- 298 |
54 -- 60 |
-18.0489 kcal/mol |
5.94535 kcal/mol |
3.74667 kcal/mol |
275 299@LB@ | |@LB@5'-CCA...AGGUC C UG-3'@LB@ CG AUUGUGCUG GC UGAGAAAGG@LB@ |: ||||||||: || ::|:|||||@LB@ GU UAACACGAU CG GUUUUUUCC@LB@3'-UUU...GCUUA A UCAUUAA UUCAU...ACG-5'@LB@ | |@LB@ 84 53@LB@@LB@@LB@Energy -8.36 kcal/mol@LB@Hybridization Energy -18.0489 kcal/mol@LB@Unfolding Energy - mRNA 5.94535 kcal/mol@LB@Unfolding Energy - sRNA 3.74667 kcal/mol@LB@@LB@Position - mRNA 276 -- 298@LB@Position - sRNA 54 -- 83@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 54 -- 60@LB@ |
84 |
0.001972 |
0.08273 |
b0968 |
yccX |
-8.34 |
0.253881 |
183 -- 226 |
2 -- 49 |
weak acylphosphatase |
|
_____________182_________________________________________________227\n_____________|___________________________________________________|\n5'-GGC...CAUUA_______GGA_____A________G_AA__C___________AA_______GGUUU...CCG-3'\n______________AGGAUAA____GAGC_GCAAUGUC_A__GU_______UGCAU__UUGCCUG\n______________|:||:||____||||_||||:|:|_|__|:_______|||||__|::||||\n______________UUCUGUU____CUCG_CGUUGCGG_U__CG_______ACGUA__AGUGGAC\n3'-UUU...CUUCA_______AUAC_____________G_AG__AACUGCA______________G-5'\n_____________|___________________________________________________|\n_____________50__________________________________________________1\n |
220 -- 226 |
2 -- 8 |
-35.2137 kcal/mol |
10.0937 kcal/mol |
16.7804 kcal/mol |
182 227@LB@ | |@LB@5'-GGC...CAUUA GGA A G AA C AA GGUUU...CCG-3'@LB@ AGGAUAA GAGC GCAAUGUC A GU UGCAU UUGCCUG@LB@ |:||:|| |||| ||||:|:| | |: ||||| |::||||@LB@ UUCUGUU CUCG CGUUGCGG U CG ACGUA AGUGGAC@LB@3'-UUU...CUUCA AUAC G AG AACUGCA G-5'@LB@ | |@LB@ 50 1@LB@@LB@@LB@Energy -8.34 kcal/mol@LB@Hybridization Energy -35.2137 kcal/mol@LB@Unfolding Energy - mRNA 10.0937 kcal/mol@LB@Unfolding Energy - sRNA 16.7804 kcal/mol@LB@@LB@Position - mRNA 183 -- 226@LB@Position - sRNA 2 -- 49@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 2 -- 8@LB@ |
188 |
0.008258 |
0.1545 |
b3803 |
hemX |
-8.31 |
0.258101 |
280 -- 297 |
46 -- 62 |
putative uroporphyrinogen III methyltransferase |
|
_____________279________________298\n_____________|__________________|\n5'-AAA...CGCAA_______AAA________ACA-3'\n______________CAGAAAA___GAGUAAGA\n______________||:||||___:|||||||\n______________GUUUUUU___UUCAUUCU\n3'-UUU...AUUAA_______CC_________GUUAU...ACG-5'\n_____________|__________________|\n_____________63_________________45\n |
291 -- 297 |
46 -- 52 |
-11.8819 kcal/mol |
0.215347 kcal/mol |
3.36135 kcal/mol |
279 298@LB@ | |@LB@5'-AAA...CGCAA AAA ACA-3'@LB@ CAGAAAA GAGUAAGA@LB@ ||:|||| :|||||||@LB@ GUUUUUU UUCAUUCU@LB@3'-UUU...AUUAA CC GUUAU...ACG-5'@LB@ | |@LB@ 63 45@LB@@LB@@LB@Energy -8.31 kcal/mol@LB@Hybridization Energy -11.8819 kcal/mol@LB@Unfolding Energy - mRNA 0.215347 kcal/mol@LB@Unfolding Energy - sRNA 3.36135 kcal/mol@LB@@LB@Position - mRNA 280 -- 297@LB@Position - sRNA 46 -- 62@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 46 -- 52@LB@ |
167 |
0.006646 |
0.1402 |
b0007 |
yaaJ |
-8.17 |
0.274480 |
254 -- 261 |
1 -- 8 |
putative transporter |
|
_____________253______262\n_____________|________|\n5'-CAA...AUGAU________UCUUC...GAU-3'\n______________UUACCUGC\n______________|:||||||\n______________AGUGGACG\n3'-UUU...ACGUA________-5'\n_____________|_______|\n_____________9_______1\n |
255 -- 261 |
1 -- 7 |
-12.8229 kcal/mol |
2.29081 kcal/mol |
2.36381 kcal/mol |
253 262@LB@ | |@LB@5'-CAA...AUGAU UCUUC...GAU-3'@LB@ UUACCUGC@LB@ |:||||||@LB@ AGUGGACG@LB@3'-UUU...ACGUA -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -8.17 kcal/mol@LB@Hybridization Energy -12.8229 kcal/mol@LB@Unfolding Energy - mRNA 2.29081 kcal/mol@LB@Unfolding Energy - sRNA 2.36381 kcal/mol@LB@@LB@Position - mRNA 254 -- 261@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 1 -- 7@LB@ |
88 |
0.002437 |
0.09689 |
b0940 |
elfC |
-8.14 |
0.278491 |
92 -- 131 |
23 -- 58 |
putative outer membrane fimbrial subunit export usher protein |
b3144 b0532 b4317 |
_____________91_________________________________________132\n_____________|__________________________________________|\n5'-AUU...CUGCC________CCAAA_____GC___________AUCGAA_____AAUGA...CAC-3'\n______________AAAGGGGG______AAUA___AGCGUAACGU______CCAUC\n______________|||||::|______||||___||||:||||:______|||||\n______________UUUCCUUC______UUAU___UCGCGUUGCG______GGUAG\n3'-UUU...AGUUU________AUUCUG____ACC_____________________CGAAC...ACG-5'\n_____________|__________________________________________|\n_____________59_________________________________________22\n |
112 -- 118 |
30 -- 36 |
-29.3003 kcal/mol |
7.72593 kcal/mol |
13.4354 kcal/mol |
91 132@LB@ | |@LB@5'-AUU...CUGCC CCAAA GC AUCGAA AAUGA...CAC-3'@LB@ AAAGGGGG AAUA AGCGUAACGU CCAUC@LB@ |||||::| |||| ||||:||||: |||||@LB@ UUUCCUUC UUAU UCGCGUUGCG GGUAG@LB@3'-UUU...AGUUU AUUCUG ACC CGAAC...ACG-5'@LB@ | |@LB@ 59 22@LB@@LB@@LB@Energy -8.14 kcal/mol@LB@Hybridization Energy -29.3003 kcal/mol@LB@Unfolding Energy - mRNA 7.72593 kcal/mol@LB@Unfolding Energy - sRNA 13.4354 kcal/mol@LB@@LB@Position - mRNA 92 -- 131@LB@Position - sRNA 23 -- 58@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 30 -- 36@LB@ |
148 |
0.005829 |
0.1368 |
b2962 |
yggX |
-8.12 |
0.280656 |
21 -- 35 |
68 -- 81 |
oxidative damage protective factor for iron-sulfur proteins |
|
_____________20______________36\n_____________|_______________|\n5'-UCA...UAGAU______C________CUUCC...AGA-3'\n______________AUUGUG_CUAUGUGG\n______________||||||_|||||::|\n______________UAACAC_GAUACGUC\n3'-UUU...UUAGU_______________AUUAA...ACG-5'\n_____________|_______________|\n_____________82______________67\n |
28 -- 34 |
69 -- 75 |
-14.4611 kcal/mol |
4.51468 kcal/mol |
1.82249 kcal/mol |
20 36@LB@ | |@LB@5'-UCA...UAGAU C CUUCC...AGA-3'@LB@ AUUGUG CUAUGUGG@LB@ |||||| |||||::|@LB@ UAACAC GAUACGUC@LB@3'-UUU...UUAGU AUUAA...ACG-5'@LB@ | |@LB@ 82 67@LB@@LB@@LB@Energy -8.12 kcal/mol@LB@Hybridization Energy -14.4611 kcal/mol@LB@Unfolding Energy - mRNA 4.51468 kcal/mol@LB@Unfolding Energy - sRNA 1.82249 kcal/mol@LB@@LB@Position - mRNA 21 -- 35@LB@Position - sRNA 68 -- 81@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 69 -- 75@LB@ |
112 |
0.003634 |
0.1131 |
b1473 |
yddG |
-8.08 |
0.286569 |
177 -- 226 |
24 -- 55 |
aromatic amino acid exporter |
|
_____________176________________________________________________227\n_____________|__________________________________________________|\n5'-GCG...UUAAC__C___A_______AACA_C____AUGACACGACAAAAA___________AGGGC...CGG-3'\n______________GG_AAG_GAGACAA____G_GAGC_______________GCAACGCUCAU\n______________||_|||_:||||||____|_||||_______________|||||||:|||\n______________CC_UUC_UUCUGUU____C_CUCG_______________CGUUGCGGGUA\n3'-UUU...UUUUU______A_______AUA_________________________________GCGAA...ACG-5'\n_____________|__________________________________________________|\n_____________56_________________________________________________23\n |
216 -- 222 |
28 -- 34 |
-30.4707 kcal/mol |
9.38627 kcal/mol |
13.0079 kcal/mol |
176 227@LB@ | |@LB@5'-GCG...UUAAC C A AACA C AUGACACGACAAAAA AGGGC...CGG-3'@LB@ GG AAG GAGACAA G GAGC GCAACGCUCAU@LB@ || ||| :|||||| | |||| |||||||:|||@LB@ CC UUC UUCUGUU C CUCG CGUUGCGGGUA@LB@3'-UUU...UUUUU A AUA GCGAA...ACG-5'@LB@ | |@LB@ 56 23@LB@@LB@@LB@Energy -8.08 kcal/mol@LB@Hybridization Energy -30.4707 kcal/mol@LB@Unfolding Energy - mRNA 9.38627 kcal/mol@LB@Unfolding Energy - sRNA 13.0079 kcal/mol@LB@@LB@Position - mRNA 177 -- 226@LB@Position - sRNA 24 -- 55@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 28 -- 34@LB@ |
104 |
0.00334 |
0.1114 |
b1923 |
fliC |
-7.97 |
0.300066 |
194 -- 205 |
75 -- 89 |
flagellar filament structural protein (flagellin) |
|
_____________193_____________206\n_____________|_______________|\n5'-GUU...GGAUA_______________ACAAG...CUU-3'\n______________ACGAAUCA__UG_GC\n______________||||||||__||_||\n______________UGCUUAGU__AC_CG\n3'-UUU...CAGCA________UA__A__AUACG...ACG-5'\n_____________|_______________|\n_____________90______________74\n |
195 -- 201 |
82 -- 88 |
-12.363 kcal/mol |
2.14901 kcal/mol |
2.24483 kcal/mol |
193 206@LB@ | |@LB@5'-GUU...GGAUA ACAAG...CUU-3'@LB@ ACGAAUCA UG GC@LB@ |||||||| || ||@LB@ UGCUUAGU AC CG@LB@3'-UUU...CAGCA UA A AUACG...ACG-5'@LB@ | |@LB@ 90 74@LB@@LB@@LB@Energy -7.97 kcal/mol@LB@Hybridization Energy -12.363 kcal/mol@LB@Unfolding Energy - mRNA 2.14901 kcal/mol@LB@Unfolding Energy - sRNA 2.24483 kcal/mol@LB@@LB@Position - mRNA 194 -- 205@LB@Position - sRNA 75 -- 89@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 82 -- 88@LB@ |
117 |
0.00395 |
0.1189 |
b3447 |
ggt |
-7.92 |
0.307079 |
7 -- 34 |
69 -- 94 |
gamma-glutamyltranspeptidase |
|
_____________6____________________________35\n_____________|____________________________|\n_____5'-GUUAGG_____UCA____AUUAA__G________AAGCC...CGU-3'\n______________GUUGU___GAGU_____UG_GCUGUGCA\n______________||:||___||:|_____||_|||:||||\n______________CAGCA___CUUA_____AC_CGAUACGU\n3'-UUU...AGCCG_____UG_____GUUA___A________CAUUA...ACG-5'\n_____________|____________________________|\n_____________95___________________________68\n |
28 -- 34 |
69 -- 75 |
-19.4914 kcal/mol |
6.89072 kcal/mol |
4.68367 kcal/mol |
6 35@LB@ | |@LB@ 5'-GUUAGG UCA AUUAA G AAGCC...CGU-3'@LB@ GUUGU GAGU UG GCUGUGCA@LB@ ||:|| ||:| || |||:||||@LB@ CAGCA CUUA AC CGAUACGU@LB@3'-UUU...AGCCG UG GUUA A CAUUA...ACG-5'@LB@ | |@LB@ 95 68@LB@@LB@@LB@Energy -7.92 kcal/mol@LB@Hybridization Energy -19.4914 kcal/mol@LB@Unfolding Energy - mRNA 6.89072 kcal/mol@LB@Unfolding Energy - sRNA 4.68367 kcal/mol@LB@@LB@Position - mRNA 7 -- 34@LB@Position - sRNA 69 -- 94@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 69 -- 75@LB@ |
108 |
0.003432 |
0.1114 |
b3159 |
yhbV |
-7.84 |
0.318675 |
148 -- 178 |
4 -- 39 |
U32 peptidase family protein |
|
_____________147___________________________________179\n_____________|_____________________________________|\n5'-GUG...CCGAA__CA_____A_______U_____________A_____GUAAA...AUC-3'\n______________GG__CGCAA___CCA_C_CUUGGCG___CAU_UCACC\n______________||__|||||___|||_|_||||:||___|||_|||||\n______________CC__GCGUU___GGU_G_GAACUGC___GUA_AGUGG\n3'-UUU...UUAUA__UC_____GCG___A_C_______AAC_________ACG-5'\n_____________|_____________________________________|\n_____________40____________________________________3\n |
163 -- 169 |
15 -- 21 |
-29.1995 kcal/mol |
6.07879 kcal/mol |
15.29 kcal/mol |
147 179@LB@ | |@LB@5'-GUG...CCGAA CA A U A GUAAA...AUC-3'@LB@ GG CGCAA CCA C CUUGGCG CAU UCACC@LB@ || ||||| ||| | ||||:|| ||| |||||@LB@ CC GCGUU GGU G GAACUGC GUA AGUGG@LB@3'-UUU...UUAUA UC GCG A C AAC ACG-5'@LB@ | |@LB@ 40 3@LB@@LB@@LB@Energy -7.84 kcal/mol@LB@Hybridization Energy -29.1995 kcal/mol@LB@Unfolding Energy - mRNA 6.07879 kcal/mol@LB@Unfolding Energy - sRNA 15.29 kcal/mol@LB@@LB@Position - mRNA 148 -- 178@LB@Position - sRNA 4 -- 39@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 15 -- 21@LB@ |
154 |
0.005979 |
0.1368 |
b4136 |
dsbD |
-7.81 |
0.321864 |
41 -- 58 |
35 -- 56 |
thiol:disulfide interchange protein and activator of DsbC |
|
_____________40______________________59\n_____________|_______________________|\n5'-UGC...UUACU___A___________________AAGAA...CGG-3'\n______________GGG_AGGUAAG_C____UGGAGC\n______________:||_|:|||||_|____||||||\n______________UCC_UUCAUUC_G____ACCUCG\n3'-UUU...UUUUU___________U_UUAU______CGUUG...ACG-5'\n_____________|_______________________|\n_____________57______________________34\n |
45 -- 51 |
47 -- 53 |
-17.7247 kcal/mol |
5.71782 kcal/mol |
4.15888 kcal/mol |
40 59@LB@ | |@LB@5'-UGC...UUACU A AAGAA...CGG-3'@LB@ GGG AGGUAAG C UGGAGC@LB@ :|| |:||||| | ||||||@LB@ UCC UUCAUUC G ACCUCG@LB@3'-UUU...UUUUU U UUAU CGUUG...ACG-5'@LB@ | |@LB@ 57 34@LB@@LB@@LB@Energy -7.81 kcal/mol@LB@Hybridization Energy -17.7247 kcal/mol@LB@Unfolding Energy - mRNA 5.71782 kcal/mol@LB@Unfolding Energy - sRNA 4.15888 kcal/mol@LB@@LB@Position - mRNA 41 -- 58@LB@Position - sRNA 35 -- 56@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 47 -- 53@LB@ |
140 |
0.005308 |
0.1336 |
b0055 |
djlA |
-7.67 |
0.341620 |
49 -- 94 |
41 -- 89 |
membrane-anchored DnaK co-chaperone DNA-binding protein |
|
_____________48_________________________________________________95\n_____________|__________________________________________________|\n5'-GAC...GAAUA__________G______G___C_GC___G__U__C_______U_______CAAAU...UUG-3'\n______________GCG__UCAGU_GUGUUA_GCA_G__AUU_AA_GA___AGGUA_GAUAAUG\n______________:||__|||:|_|||:||_|||_|__|||_||_:|___|:|||_||:|||:\n______________UGC__AGUUA_CACGAU_CGU_C__UAA_UU_UU___UUCAU_CUGUUAU\n3'-UUU...CAGCA___UU_____A______A_____AU___G__U__UCC_____U_______ACCUC...ACG-5'\n_____________|__________________________________________________|\n_____________90_________________________________________________40\n |
88 -- 94 |
41 -- 47 |
-26.3807 kcal/mol |
12.8315 kcal/mol |
5.88014 kcal/mol |
48 95@LB@ | |@LB@5'-GAC...GAAUA G G C GC G U C U CAAAU...UUG-3'@LB@ GCG UCAGU GUGUUA GCA G AUU AA GA AGGUA GAUAAUG@LB@ :|| |||:| |||:|| ||| | ||| || :| |:||| ||:|||:@LB@ UGC AGUUA CACGAU CGU C UAA UU UU UUCAU CUGUUAU@LB@3'-UUU...CAGCA UU A A AU G U UCC U ACCUC...ACG-5'@LB@ | |@LB@ 90 40@LB@@LB@@LB@Energy -7.67 kcal/mol@LB@Hybridization Energy -26.3807 kcal/mol@LB@Unfolding Energy - mRNA 12.8315 kcal/mol@LB@Unfolding Energy - sRNA 5.88014 kcal/mol@LB@@LB@Position - mRNA 49 -- 94@LB@Position - sRNA 41 -- 89@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 41 -- 47@LB@ |
168 |
0.006702 |
0.1406 |
b2051 |
wcaH |
-7.67 |
0.342256 |
86 -- 123 |
5 -- 40 |
GDP-mannose mannosyl hydrolase |
|
_____________85_______________________________________124\n_____________|________________________________________|\n5'-GCG...ACUGC____U___AC_____UG____A_______UG_________GAAAU...UUG-3'\n______________UGGA_GUG__GCGCC__CAUC_GCUUGGC___GUA_UCAC\n______________||||_|:|__:||||__||||_|||||:|___|:|_||||\n______________ACCU_CGC__UGCGG__GUAG_CGAACUG___CGU_AGUG\n3'-UUU...GUUAU________GU___________________CAA___A____GACG-5'\n_____________|________________________________________|\n_____________41_______________________________________4\n |
108 -- 114 |
16 -- 22 |
-36.6804 kcal/mol |
13.756 kcal/mol |
15.262 kcal/mol |
85 124@LB@ | |@LB@5'-GCG...ACUGC U AC UG A UG GAAAU...UUG-3'@LB@ UGGA GUG GCGCC CAUC GCUUGGC GUA UCAC@LB@ |||| |:| :|||| |||| |||||:| |:| ||||@LB@ ACCU CGC UGCGG GUAG CGAACUG CGU AGUG@LB@3'-UUU...GUUAU GU CAA A GACG-5'@LB@ | |@LB@ 41 4@LB@@LB@@LB@Energy -7.67 kcal/mol@LB@Hybridization Energy -36.6804 kcal/mol@LB@Unfolding Energy - mRNA 13.756 kcal/mol@LB@Unfolding Energy - sRNA 15.262 kcal/mol@LB@@LB@Position - mRNA 86 -- 123@LB@Position - sRNA 5 -- 40@LB@Position Seed - mRNA 108 -- 114@LB@Position Seed - sRNA 16 -- 22@LB@ |
123 |
0.004425 |
0.1258 |
b2535 |
csiE |
-7.63 |
0.347411 |
1 -- 40 |
5 -- 36 |
stationary phase inducible protein |
|
______________1_______________________________________41\n______________|_______________________________________|\n___________5'-__AG___UAA____UGA_____A_C___AUAAU_______AAAAC...UGG-3'\n______________GC__AAC___CCCA___UCGCU_G_ACG_____CAUUCAC\n______________||__|||___||||___|||||_|_|||_____|||||||\n______________CG__UUG___GGGU___AGCGA_C_UGC_____GUAAGUG\n3'-UUU...UACCU__CG___C______________A_____AAC_________GACG-5'\n_____________|________________________________________|\n_____________37_______________________________________4\n |
34 -- 40 |
5 -- 11 |
-25.9316 kcal/mol |
3.04784 kcal/mol |
15.2569 kcal/mol |
1 41@LB@ | |@LB@ 5'- AG UAA UGA A C AUAAU AAAAC...UGG-3'@LB@ GC AAC CCCA UCGCU G ACG CAUUCAC@LB@ || ||| |||| ||||| | ||| |||||||@LB@ CG UUG GGGU AGCGA C UGC GUAAGUG@LB@3'-UUU...UACCU CG C A AAC GACG-5'@LB@ | |@LB@ 37 4@LB@@LB@@LB@Energy -7.63 kcal/mol@LB@Hybridization Energy -25.9316 kcal/mol@LB@Unfolding Energy - mRNA 3.04784 kcal/mol@LB@Unfolding Energy - sRNA 15.2569 kcal/mol@LB@@LB@Position - mRNA 1 -- 40@LB@Position - sRNA 5 -- 36@LB@Position Seed - mRNA 34 -- 40@LB@Position Seed - sRNA 5 -- 11@LB@ |
158 |
0.006224 |
0.1377 |
b3553 |
ghrB |
-7.62 |
0.349627 |
252 -- 258 |
1 -- 7 |
glyoxylate/hydroxypyruvate reductase B |
|
_____________251_____259\n_____________|_______|\n5'-UCA...UGCAA_______AAGAG...CAC-3'\n______________CGCCUGC\n______________|:|||||\n______________GUGGACG\n3'-UUU...CGUAA_______-5'\n_____________|______|\n_____________8______1\n |
252 -- 258 |
1 -- 7 |
-12.8134 kcal/mol |
2.86334 kcal/mol |
2.34039 kcal/mol |
251 259@LB@ | |@LB@5'-UCA...UGCAA AAGAG...CAC-3'@LB@ CGCCUGC@LB@ |:|||||@LB@ GUGGACG@LB@3'-UUU...CGUAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -7.62 kcal/mol@LB@Hybridization Energy -12.8134 kcal/mol@LB@Unfolding Energy - mRNA 2.86334 kcal/mol@LB@Unfolding Energy - sRNA 2.34039 kcal/mol@LB@@LB@Position - mRNA 252 -- 258@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 1 -- 7@LB@ |
190 |
0.008377 |
0.1548 |
b3167 |
rbfA |
-7.61 |
0.351010 |
14 -- 35 |
19 -- 38 |
30s ribosome binding factor |
|
_____________13_____________________36\n_____________|______________________|\n5'-AUU...UCAUC___A_C______A_________AAGGU...GCA-3'\n______________GAG_U_CAACGU_CCAUUGCUU\n______________|||_:_|||||:_||||:||||\n______________CUC_G_GUUGCG_GGUAGCGAA\n3'-UUU...UAUAC_____C________________CUGCA...ACG-5'\n_____________|______________________|\n_____________39_____________________18\n |
29 -- 35 |
19 -- 25 |
-22.6036 kcal/mol |
2.81921 kcal/mol |
12.1801 kcal/mol |
13 36@LB@ | |@LB@5'-AUU...UCAUC A C A AAGGU...GCA-3'@LB@ GAG U CAACGU CCAUUGCUU@LB@ ||| : |||||: ||||:||||@LB@ CUC G GUUGCG GGUAGCGAA@LB@3'-UUU...UAUAC C CUGCA...ACG-5'@LB@ | |@LB@ 39 18@LB@@LB@@LB@Energy -7.61 kcal/mol@LB@Hybridization Energy -22.6036 kcal/mol@LB@Unfolding Energy - mRNA 2.81921 kcal/mol@LB@Unfolding Energy - sRNA 12.1801 kcal/mol@LB@@LB@Position - mRNA 14 -- 35@LB@Position - sRNA 19 -- 38@LB@Position Seed - mRNA 29 -- 35@LB@Position Seed - sRNA 19 -- 25@LB@ |
71 |
0.001416 |
0.07026 |
b0880 |
cspD |
-7.58 |
0.355655 |
51 -- 57 |
1 -- 7 |
inhibitor of DNA replication cold shock protein homolog |
|
_____________50______58\n_____________|_______|\n5'-AUC...AUUCA_______CCCUU...CCA-3'\n______________UACCUGC\n______________:||||||\n______________GUGGACG\n3'-UUU...CGUAA_______-5'\n_____________|______|\n_____________8______1\n |
51 -- 57 |
1 -- 7 |
-10.3464 kcal/mol |
0.429757 kcal/mol |
2.34039 kcal/mol |
50 58@LB@ | |@LB@5'-AUC...AUUCA CCCUU...CCA-3'@LB@ UACCUGC@LB@ :||||||@LB@ GUGGACG@LB@3'-UUU...CGUAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -7.58 kcal/mol@LB@Hybridization Energy -10.3464 kcal/mol@LB@Unfolding Energy - mRNA 0.429757 kcal/mol@LB@Unfolding Energy - sRNA 2.34039 kcal/mol@LB@@LB@Position - mRNA 51 -- 57@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 51 -- 57@LB@Position Seed - sRNA 1 -- 7@LB@ |
147 |
0.005701 |
0.1366 |
b1622 |
malY |
-7.52 |
0.364460 |
44 -- 91 |
35 -- 85 |
PLP-dependent beta-cystathionase and maltose regulon regulator |
|
_____________43____________________________________________________92\n_____________|_____________________________________________________|\n5'-UCG...GAUAU____C____UAA_______GCACU__________CAAUC___________C__AGUAC...UCA-3'\n______________GUCG_UUGU___UGUGCAG_________GAAGGA_____GGGCAAU_UGG_GU\n______________:||:_||||___|:|||||_________:|||||_____:|:||||_|||_|:\n______________UAGU_AACA___AUACGUC_________UUUCCU_____UCUGUUA_ACC_CG\n3'-UUU...AUGCU____U____CG________AUUAAGUUU______UCAU________U___U__CGUUG...ACG-5'\n_____________|_____________________________________________________|\n_____________86____________________________________________________34\n |
79 -- 85 |
42 -- 48 |
-29.3049 kcal/mol |
13.5755 kcal/mol |
8.20283 kcal/mol |
43 92@LB@ | |@LB@5'-UCG...GAUAU C UAA GCACU CAAUC C AGUAC...UCA-3'@LB@ GUCG UUGU UGUGCAG GAAGGA GGGCAAU UGG GU@LB@ :||: |||| |:||||| :||||| :|:|||| ||| |:@LB@ UAGU AACA AUACGUC UUUCCU UCUGUUA ACC CG@LB@3'-UUU...AUGCU U CG AUUAAGUUU UCAU U U CGUUG...ACG-5'@LB@ | |@LB@ 86 34@LB@@LB@@LB@Energy -7.52 kcal/mol@LB@Hybridization Energy -29.3049 kcal/mol@LB@Unfolding Energy - mRNA 13.5755 kcal/mol@LB@Unfolding Energy - sRNA 8.20283 kcal/mol@LB@@LB@Position - mRNA 44 -- 91@LB@Position - sRNA 35 -- 85@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 42 -- 48@LB@ |
146 |
0.005657 |
0.1365 |
b4322 |
uxuA |
-7.47 |
0.371307 |
180 -- 195 |
52 -- 75 |
mannonate hydrolase |
|
_____________179______________________196\n_____________|________________________|\n5'-CAU...ACCCA________________________AAAUC...AUA-3'\n______________CUAUGU________GAAAGAGGAA\n______________|||||:________:|||:|||||\n______________GAUACG________UUUUUUCCUU\n3'-UUU...AACAC______UCAUUAAG__________CAUUC...ACG-5'\n_____________|________________________|\n_____________76_______________________51\n |
189 -- 195 |
52 -- 58 |
-13.8583 kcal/mol |
2.68591 kcal/mol |
3.70263 kcal/mol |
179 196@LB@ | |@LB@5'-CAU...ACCCA AAAUC...AUA-3'@LB@ CUAUGU GAAAGAGGAA@LB@ |||||: :|||:|||||@LB@ GAUACG UUUUUUCCUU@LB@3'-UUU...AACAC UCAUUAAG CAUUC...ACG-5'@LB@ | |@LB@ 76 51@LB@@LB@@LB@Energy -7.47 kcal/mol@LB@Hybridization Energy -13.8583 kcal/mol@LB@Unfolding Energy - mRNA 2.68591 kcal/mol@LB@Unfolding Energy - sRNA 3.70263 kcal/mol@LB@@LB@Position - mRNA 180 -- 195@LB@Position - sRNA 52 -- 75@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 52 -- 58@LB@ |
91 |
0.002503 |
0.09689 |
b1062 |
pyrC |
-7.37 |
0.386343 |
231 -- 263 |
1 -- 35 |
dihydro-orotase |
|
_____________230_______________________________________264\n_____________|_________________________________________|\n5'-GCG...AGAUC_____________________ACUG___CC_______CC__GAUGG...CCA-3'\n______________CGC__CGCCCA______GACG____GCA__UUCACCU__GC\n______________|||__||||||______||||____|||__|||||||__||\n______________GCG__GCGGGU______CUGC____CGU__AAGUGGA__CG\n3'-UUU...ACCUC___UU______AGCGAA____AA__________________-5'\n_____________|________________________________________|\n_____________36_______________________________________1\n |
253 -- 259 |
3 -- 9 |
-30.041 kcal/mol |
7.38685 kcal/mol |
15.286 kcal/mol |
230 264@LB@ | |@LB@5'-GCG...AGAUC ACUG CC CC GAUGG...CCA-3'@LB@ CGC CGCCCA GACG GCA UUCACCU GC@LB@ ||| |||||| |||| ||| ||||||| ||@LB@ GCG GCGGGU CUGC CGU AAGUGGA CG@LB@3'-UUU...ACCUC UU AGCGAA AA -5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -7.37 kcal/mol@LB@Hybridization Energy -30.041 kcal/mol@LB@Unfolding Energy - mRNA 7.38685 kcal/mol@LB@Unfolding Energy - sRNA 15.286 kcal/mol@LB@@LB@Position - mRNA 231 -- 263@LB@Position - sRNA 1 -- 35@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 3 -- 9@LB@ |
161 |
0.006314 |
0.1377 |
b4099 |
phnI |
-7.36 |
0.387929 |
194 -- 228 |
46 -- 79 |
ribophosphonate triphosphate synthase complex putative catalytic subunit |
|
_____________193__________________________________229\n_____________|____________________________________|\n5'-AGC...GGAGG______G_____C__UGC___U_________C____AGGCG...GCG-3'\n______________UGUGCU_AUGUA_GU____CG_GAAAGGGGG_GAGA\n______________||||||_|||:|_||____|:_:|||||::|_:|||\n______________ACACGA_UACGU_CA____GU_UUUUCCUUC_UUCU\n3'-UUU...AGUUA_______________UUAA__U_________A____GUUAU...ACG-5'\n_____________|____________________________________|\n_____________80___________________________________45\n |
217 -- 223 |
51 -- 57 |
-26.8268 kcal/mol |
14.1464 kcal/mol |
5.32077 kcal/mol |
193 229@LB@ | |@LB@5'-AGC...GGAGG G C UGC U C AGGCG...GCG-3'@LB@ UGUGCU AUGUA GU CG GAAAGGGGG GAGA@LB@ |||||| |||:| || |: :|||||::| :|||@LB@ ACACGA UACGU CA GU UUUUCCUUC UUCU@LB@3'-UUU...AGUUA UUAA U A GUUAU...ACG-5'@LB@ | |@LB@ 80 45@LB@@LB@@LB@Energy -7.36 kcal/mol@LB@Hybridization Energy -26.8268 kcal/mol@LB@Unfolding Energy - mRNA 14.1464 kcal/mol@LB@Unfolding Energy - sRNA 5.32077 kcal/mol@LB@@LB@Position - mRNA 194 -- 228@LB@Position - sRNA 46 -- 79@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 51 -- 57@LB@ |
86 |
0.002341 |
0.09591 |
b0144 |
gluQ |
-7.21 |
0.411815 |
221 -- 264 |
26 -- 65 |
glutamyl-Q tRNA(Asp) synthetase |
|
_____________220__________________________________________265\n_____________|____________________________________________|\n5'-AGA...UUUUU__________AU__C__ACAC_______AUU__C___UU_____CCUCU...UGA-3'\n______________GUUCAAAGAG__GA_AG____ACAGUAU___GG_CGC__CGCCC\n______________:||||||:|:__||_||____|||:|||___:|_|||__|||||\n______________UAAGUUUUUU__CU_UC____UGUUAUA___UC_GCG__GCGGG\n3'-UUU...GUCAU__________C______AUUC_______CC_______UU_____UAGCG...ACG-5'\n_____________|____________________________________________|\n_____________66___________________________________________25\n |
242 -- 248 |
40 -- 46 |
-28.4973 kcal/mol |
7.75098 kcal/mol |
13.5387 kcal/mol |
220 265@LB@ | |@LB@5'-AGA...UUUUU AU C ACAC AUU C UU CCUCU...UGA-3'@LB@ GUUCAAAGAG GA AG ACAGUAU GG CGC CGCCC@LB@ :||||||:|: || || |||:||| :| ||| |||||@LB@ UAAGUUUUUU CU UC UGUUAUA UC GCG GCGGG@LB@3'-UUU...GUCAU C AUUC CC UU UAGCG...ACG-5'@LB@ | |@LB@ 66 25@LB@@LB@@LB@Energy -7.21 kcal/mol@LB@Hybridization Energy -28.4973 kcal/mol@LB@Unfolding Energy - mRNA 7.75098 kcal/mol@LB@Unfolding Energy - sRNA 13.5387 kcal/mol@LB@@LB@Position - mRNA 221 -- 264@LB@Position - sRNA 26 -- 65@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 40 -- 46@LB@ |
194 |
0.008684 |
0.1548 |
b1242 |
ychE |
-7.20 |
0.413978 |
105 -- 113 |
48 -- 56 |
UPF0056 family inner membrane protein |
|
_____________104_______114\n_____________|_________|\n5'-CAU...UAGUU_________AAAAU...GCA-3'\n______________AGGAGGUGA\n______________||||:||:|\n______________UCCUUCAUU\n3'-UUU...UUUUU_________CUGUU...ACG-5'\n_____________|_________|\n_____________57________47\n |
107 -- 113 |
48 -- 54 |
-10.6218 kcal/mol |
2.70901 kcal/mol |
0.718267 kcal/mol |
104 114@LB@ | |@LB@5'-CAU...UAGUU AAAAU...GCA-3'@LB@ AGGAGGUGA@LB@ ||||:||:|@LB@ UCCUUCAUU@LB@3'-UUU...UUUUU CUGUU...ACG-5'@LB@ | |@LB@ 57 47@LB@@LB@@LB@Energy -7.20 kcal/mol@LB@Hybridization Energy -10.6218 kcal/mol@LB@Unfolding Energy - mRNA 2.70901 kcal/mol@LB@Unfolding Energy - sRNA 0.718267 kcal/mol@LB@@LB@Position - mRNA 105 -- 113@LB@Position - sRNA 48 -- 56@LB@Position Seed - mRNA 107 -- 113@LB@Position Seed - sRNA 48 -- 54@LB@ |
62 |
0.001027 |
0.05816 |
b0717 |
ybgP |
-6.75 |
0.488398 |
48 -- 57 |
53 -- 62 |
putative periplasmic pilin chaperone |
b3047 |
_____________47_________58\n_____________|__________|\n5'-GCG...GUUGG__________CAUGC...CCA-3'\n______________CGAGGAAGGA\n______________|:|::|||||\n______________GUUUUUUCCU\n3'-UUU...AUUAA__________UCAUU...ACG-5'\n_____________|__________|\n_____________63_________52\n |
51 -- 57 |
53 -- 59 |
-10.1576 kcal/mol |
0.982686 kcal/mol |
2.4254 kcal/mol |
47 58@LB@ | |@LB@5'-GCG...GUUGG CAUGC...CCA-3'@LB@ CGAGGAAGGA@LB@ |:|::|||||@LB@ GUUUUUUCCU@LB@3'-UUU...AUUAA UCAUU...ACG-5'@LB@ | |@LB@ 63 52@LB@@LB@@LB@Energy -6.75 kcal/mol@LB@Hybridization Energy -10.1576 kcal/mol@LB@Unfolding Energy - mRNA 0.982686 kcal/mol@LB@Unfolding Energy - sRNA 2.4254 kcal/mol@LB@@LB@Position - mRNA 48 -- 57@LB@Position - sRNA 53 -- 62@LB@Position Seed - mRNA 51 -- 57@LB@Position Seed - sRNA 53 -- 59@LB@ |
120 |
0.004053 |
0.119 |
b2441 |
eutB |
-6.09 |
0.606518 |
293 -- 299 |
73 -- 79 |
ethanolamine ammonia-lyase large subunit heavy chain |
|
_____________292_____300\n_____________|_______|\n5'-CUG...GGGGA_______G-3'\n______________UGUGCUG\n______________||||||:\n______________ACACGAU\n3'-UUU...AGUUA_______ACGUC...ACG-5'\n_____________|_______|\n_____________80______72\n |
293 -- 299 |
73 -- 79 |
-8.7652 kcal/mol |
1.34517 kcal/mol |
1.33434 kcal/mol |
292 300@LB@ | |@LB@5'-CUG...GGGGA G-3'@LB@ UGUGCUG@LB@ ||||||:@LB@ ACACGAU@LB@3'-UUU...AGUUA ACGUC...ACG-5'@LB@ | |@LB@ 80 72@LB@@LB@@LB@Energy -6.09 kcal/mol@LB@Hybridization Energy -8.7652 kcal/mol@LB@Unfolding Energy - mRNA 1.34517 kcal/mol@LB@Unfolding Energy - sRNA 1.33434 kcal/mol@LB@@LB@Position - mRNA 293 -- 299@LB@Position - sRNA 73 -- 79@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 73 -- 79@LB@ |
197 |
0.008895 |
0.1548 |
b2844 |
yqeF |
-5.48 |
0.714940 |
222 -- 246 |
20 -- 39 |
short chain acyltransferase |
|
_____________221_______________________247\n_____________|_________________________|\n5'-CCA...UUGUC_______UACG___A_______G__GCUUU...UCG-3'\n______________GGGGCGU____GAC_CCUAUCG_CU\n______________||:|||:____:||_||:||||_||\n______________CCUCGCG____UUG_GGGUAGC_GA\n3'-UUU...UUAUA______________C__________ACUGC...ACG-5'\n_____________|_________________________|\n_____________40________________________19\n |
237 -- 243 |
22 -- 28 |
-25.7666 kcal/mol |
8.11246 kcal/mol |
12.1811 kcal/mol |
221 247@LB@ | |@LB@5'-CCA...UUGUC UACG A G GCUUU...UCG-3'@LB@ GGGGCGU GAC CCUAUCG CU@LB@ ||:|||: :|| ||:|||| ||@LB@ CCUCGCG UUG GGGUAGC GA@LB@3'-UUU...UUAUA C ACUGC...ACG-5'@LB@ | |@LB@ 40 19@LB@@LB@@LB@Energy -5.48 kcal/mol@LB@Hybridization Energy -25.7666 kcal/mol@LB@Unfolding Energy - mRNA 8.11246 kcal/mol@LB@Unfolding Energy - sRNA 12.1811 kcal/mol@LB@@LB@Position - mRNA 222 -- 246@LB@Position - sRNA 20 -- 39@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 22 -- 28@LB@ |