1 |
1.123e-05 |
0.04352 |
bsu13990 |
kinA |
-26.46 |
0.000103 |
182 -- 297 |
38 -- 181 |
sporulation kinase A |
bsu14490 bsu13530 |
_____________181___________________________________________________________________________________________________________________________298\n_____________|_____________________________________________________________________________________________________________________________|\n5'-CUA...GAGGG_____GUGG________________________________________________AA______________CAAAAACCGAUA___A_____________CUC____G____G____A_____AUAUC...ACU-3'\n______________AUUCU_____AACAGGAUA___________CGCAGCA_______________UGUUA____C_CA_CUUCAAA____________UUC__UGCAGUCUUGGC___UAAU_G_AC_CAUC_UUUAU\n______________|:|||_____|||||||:|___________|||||||_______________|||:|____|_||_|||||||____________|||__||||:|||||||___:|||_|_||_||||_:||||\n______________UGAGA_____UUGUCCUGU___________GCGUCGU_______________ACAGU____G_GU_GAAGUUU____________AAG__ACGUUAGAACCG___GUUA_C_UG_GUAG_GAAUA\n3'-AUU...AAAAA_____AGUAG_________AACUGUAACAG_______UCAAGGUAUAUUACA_____GAAA_A__A_______CAUUACUUACCG___CA____________UUU____G_A__G____A_____AGGGG...CAA-5'\n_____________|_____________________________________________________________________________________________________________________________|\n_____________182___________________________________________________________________________________________________________________________37\n |
259 -- 265 |
67 -- 73 |
-65.6544 kcal/mol |
17.7451 kcal/mol |
29.7341 kcal/mol |
181 298@LB@ | |@LB@5'-CUA...GAGGG GUGG AA CAAAAACCGAUA A CUC G G A AUAUC...ACU-3'@LB@ AUUCU AACAGGAUA CGCAGCA UGUUA C CA CUUCAAA UUC UGCAGUCUUGGC UAAU G AC CAUC UUUAU@LB@ |:||| |||||||:| ||||||| |||:| | || ||||||| ||| ||||:||||||| :||| | || |||| :||||@LB@ UGAGA UUGUCCUGU GCGUCGU ACAGU G GU GAAGUUU AAG ACGUUAGAACCG GUUA C UG GUAG GAAUA@LB@3'-AUU...AAAAA AGUAG AACUGUAACAG UCAAGGUAUAUUACA GAAA A A CAUUACUUACCG CA UUU G A G A AGGGG...CAA-5'@LB@ | |@LB@ 182 37@LB@@LB@@LB@Energy -26.46 kcal/mol@LB@Hybridization Energy -65.6544 kcal/mol@LB@Unfolding Energy - mRNA 17.7451 kcal/mol@LB@Unfolding Energy - sRNA 29.7341 kcal/mol@LB@@LB@Position - mRNA 182 -- 297@LB@Position - sRNA 38 -- 181@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 67 -- 73@LB@ |
2 |
6.323e-05 |
0.08823 |
bsu13370 |
ykoQ |
-21.23 |
0.001523 |
8 -- 146 |
40 -- 170 |
metallophosphoesterase |
|
_____________7_______________________________________________________________________________________________________________________________________________________147\n_____________|_______________________________________________________________________________________________________________________________________________________|\n____5'-CGUAACA______ACA____C__UUGU___UC____________U_____U_____GCCUC_________AAA_______A__CCUUUUCC__________CAAAU__U__AUCAUAU______C___UUUUCA__________ACCCAUUA______GCUAU...CAA-3'\n______________UUGCUU___CAUC_AU____UAU__UGAC____UCCG_CGGCA_GUUCU_____AUG_UGUCA____UUUAUU_UC______________CUUC_____CA_UC_______GACAAU_CGU______ACCUGUCUCU________AUUCCC\n______________||:||:___||||_|:____:||__||||____||||_|:|||_||||:_____|||_|||||____:|:||:_||______________||||_____||_||_______:|||||_|||______|||::|||||________||||||\n______________AAUGAG___GUAG_UG____GUA__ACUG____AGGC_GUCGU_CAAGG_____UAC_ACAGU____GAGUAG_AG______________GAAG_____GU_AG_______UUGUUA_GCA______UGGGUAGAGA________UAAGGG\n3'-AUU...AAAAA______AA_____U__UCCU_________UAAC__________U_____UAUAU___A_____GAAA______A__UUUCAUUACUUACC____CAAC___U__AACCGU___________________________A_____________GUAAA...CAA-5'\n_____________|_______________________________________________________________________________________________________________________________________________________|\n_____________171_____________________________________________________________________________________________________________________________________________________39\n |
126 -- 132 |
47 -- 53 |
-61.8379 kcal/mol |
13.5948 kcal/mol |
30.7766 kcal/mol |
7 147@LB@ | |@LB@ 5'-CGUAACA ACA C UUGU UC U U GCCUC AAA A CCUUUUCC CAAAU U AUCAUAU C UUUUCA ACCCAUUA GCUAU...CAA-3'@LB@ UUGCUU CAUC AU UAU UGAC UCCG CGGCA GUUCU AUG UGUCA UUUAUU UC CUUC CA UC GACAAU CGU ACCUGUCUCU AUUCCC@LB@ ||:||: |||| |: :|| |||| |||| |:||| ||||: ||| ||||| :|:||: || |||| || || :||||| ||| |||::||||| ||||||@LB@ AAUGAG GUAG UG GUA ACUG AGGC GUCGU CAAGG UAC ACAGU GAGUAG AG GAAG GU AG UUGUUA GCA UGGGUAGAGA UAAGGG@LB@3'-AUU...AAAAA AA U UCCU UAAC U UAUAU A GAAA A UUUCAUUACUUACC CAAC U AACCGU A GUAAA...CAA-5'@LB@ | |@LB@ 171 39@LB@@LB@@LB@Energy -21.23 kcal/mol@LB@Hybridization Energy -61.8379 kcal/mol@LB@Unfolding Energy - mRNA 13.5948 kcal/mol@LB@Unfolding Energy - sRNA 30.7766 kcal/mol@LB@@LB@Position - mRNA 8 -- 146@LB@Position - sRNA 40 -- 170@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 47 -- 53@LB@ |
3 |
8.73e-05 |
0.08823 |
bsu25090 |
yqfW |
-16.63 |
0.015052 |
29 -- 79 |
33 -- 81 |
nucleotidase YqfW |
|
_____________28____________________________________________________80\n_____________|_____________________________________________________|\n5'-CCU...GUAAC______U___AC___UUUUCG_______UUG___C___CA_______C_____GUUUU...ACG-3'\n______________UGUUGU_AUC___GC______UAAUCGU___CCA_CUU__AUUCCCC__UUCU\n______________:||||:_|||___||______:||||||___|||_||:__|||||||__||||\n______________GCAACG_UAG___CG______GUUAGCA___GGU_GAG__UAAGGGG__AAGA\n3'-AUU...CCGAA______U___AAC__UUU__________UG____A___AA_______UA____AACUU...CAA-5'\n_____________|_____________________________________________________|\n_____________82____________________________________________________32\n |
68 -- 74 |
39 -- 45 |
-32.9438 kcal/mol |
5.67451 kcal/mol |
13.9362 kcal/mol |
28 80@LB@ | |@LB@5'-CCU...GUAAC U AC UUUUCG UUG C CA C GUUUU...ACG-3'@LB@ UGUUGU AUC GC UAAUCGU CCA CUU AUUCCCC UUCU@LB@ :||||: ||| || :|||||| ||| ||: ||||||| ||||@LB@ GCAACG UAG CG GUUAGCA GGU GAG UAAGGGG AAGA@LB@3'-AUU...CCGAA U AAC UUU UG A AA UA AACUU...CAA-5'@LB@ | |@LB@ 82 32@LB@@LB@@LB@Energy -16.63 kcal/mol@LB@Hybridization Energy -32.9438 kcal/mol@LB@Unfolding Energy - mRNA 5.67451 kcal/mol@LB@Unfolding Energy - sRNA 13.9362 kcal/mol@LB@@LB@Position - mRNA 29 -- 79@LB@Position - sRNA 33 -- 81@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 39 -- 45@LB@ |
4 |
0.0001192 |
0.08823 |
bsu12150 |
yjgB |
-21.60 |
0.001260 |
37 -- 72 |
32 -- 79 |
Evidence 5: No homology to any previously reported sequences; PubMedId: 1580552 |
|
_____________36_______________________________________________73\n_____________|________________________________________________|\n5'-CCU...UGUGA____UU_____C____________________C_______________GCUUU...CAG-3'\n______________UUGU__UCUUG_CAG__________CCAUCUC__AUUCCCC_UUUCUU\n______________|||:__|||||_||:__________|||||||__|||||||_||||||\n______________AACG__AGAAC_GUU__________GGUAGAG__UAAGGGG_AAAGAA\n3'-AUU...GAAGC____UU_____C___UGUUAGCAUG_______AA_______U______ACUUU...CAA-5'\n_____________|________________________________________________|\n_____________80_______________________________________________31\n |
60 -- 66 |
39 -- 45 |
-34.5565 kcal/mol |
2.03428 kcal/mol |
13.9015 kcal/mol |
36 73@LB@ | |@LB@5'-CCU...UGUGA UU C C GCUUU...CAG-3'@LB@ UUGU UCUUG CAG CCAUCUC AUUCCCC UUUCUU@LB@ |||: ||||| ||: ||||||| ||||||| ||||||@LB@ AACG AGAAC GUU GGUAGAG UAAGGGG AAAGAA@LB@3'-AUU...GAAGC UU C UGUUAGCAUG AA U ACUUU...CAA-5'@LB@ | |@LB@ 80 31@LB@@LB@@LB@Energy -21.60 kcal/mol@LB@Hybridization Energy -34.5565 kcal/mol@LB@Unfolding Energy - mRNA 2.03428 kcal/mol@LB@Unfolding Energy - sRNA 13.9015 kcal/mol@LB@@LB@Position - mRNA 37 -- 72@LB@Position - sRNA 32 -- 79@LB@Position Seed - mRNA 60 -- 66@LB@Position Seed - sRNA 39 -- 45@LB@ |
5 |
0.0001198 |
0.08823 |
bsu33680 |
yvaP |
-23.88 |
0.000393 |
26 -- 134 |
34 -- 167 |
HTH-type transcriptional regulator YvaP |
|
_____________25___________________________________________________________________________________________________________________________________________________________135\n_____________|____________________________________________________________________________________________________________________________________________________________|\n5'-UUU...AACAU_______A______________AAA____________AUA________________A_______________AGCAAAAAAAC__________C_____C__UC______C___________CU____A______AUCAAUC______________CAUGC...CGC-3'\n______________CUC_UCA__AGCAGGAUAUUGA_____UCU_CAGCAA___CU___________UCG_UUUUUUGUCUUCAGA___________GC______GC__UCUU__C__AUAAUC___CCUGUUUCU__UUCU_UAUUUU______________ACGCUUG\n______________|||_|||__|:|||||:|||||_____||:_||||||___|:___________||:_|||:|::||||||:|___________||______||__||||__|__|:||||___||::|:|||__|||:_:||||:______________||||||:\n______________GAG_AGU__UUGUCCUGUAACU_____AGG_GUCGUU___GG___________AGU_AAAGAGUAGAAGUUU___________CG______CG__AGAA__G__UGUUAG___GGGUAGAGA__AAGG_GUAAAG______________UGCGAAU\n3'-AUU...AAAAU___A___AG_____________GUAAC___C______CAA__UAUAUUACAAC___G_______________CAUUACUUAC___AAGCAA__UU____CC_UU______CAU_________AU____G______AAACUUUAAACUUU_______UAAAG...CAA-5'\n_____________|____________________________________________________________________________________________________________________________________________________________|\n_____________168__________________________________________________________________________________________________________________________________________________________33\n |
142 -- 148 |
13 -- 19 |
-70.4657 kcal/mol |
17.0109 kcal/mol |
33.4152 kcal/mol |
25 135@LB@ | |@LB@5'-UUU...AACAU A AAA AUA A AGCAAAAAAAC C C UC C CU A AUCAAUC CAUGC...CGC-3'@LB@ CUC UCA AGCAGGAUAUUGA UCU CAGCAA CU UCG UUUUUUGUCUUCAGA GC GC UCUU C AUAAUC CCUGUUUCU UUCU UAUUUU ACGCUUG@LB@ ||| ||| |:|||||:||||| ||: |||||| |: ||: |||:|::||||||:| || || |||| | |:|||| ||::|:||| |||: :||||: ||||||:@LB@ GAG AGU UUGUCCUGUAACU AGG GUCGUU GG AGU AAAGAGUAGAAGUUU CG CG AGAA G UGUUAG GGGUAGAGA AAGG GUAAAG UGCGAAU@LB@3'-AUU...AAAAU A AG GUAAC C CAA UAUAUUACAAC G CAUUACUUAC AAGCAA UU CC UU CAU AU G AAACUUUAAACUUU UAAAG...CAA-5'@LB@ | |@LB@ 168 33@LB@@LB@@LB@Energy -23.88 kcal/mol@LB@Hybridization Energy -70.4657 kcal/mol@LB@Unfolding Energy - mRNA 17.0109 kcal/mol@LB@Unfolding Energy - sRNA 33.4152 kcal/mol@LB@@LB@Position - mRNA 26 -- 134@LB@Position - sRNA 34 -- 167@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 13 -- 19@LB@ |
6 |
0.0001543 |
0.08823 |
bsu10740 |
yisJ |
-16.00 |
0.020473 |
36 -- 139 |
34 -- 134 |
inner spore coat protein H-like protein |
|
_____________35____________________________________________________140\n_____________|_____________________________________________________|\n5'-GGC...GUUCC______GCAAAUUUCAUG_______U____CA_____U____C__________CCUUC...UUC-3'\n______________CCUGUC____________UUAUUCC_CCAU__UCUUU_AAAU___AGAAUGCU\n______________||::||____________|||||||_||||__|||||_||||___|:||:|||\n______________GGGUAG____________AAUAAGG_GGUA__AGAAA_UUUA___UUUUGCGA\n3'-AUU...AGCAU______AG______________________A______C____AAC________AUUAA...CAA-5'\n_____________|_____________________________________________________|\n_____________135___________________________________________________33\n |
74 -- 80 |
15 -- 21 |
-28.1573 kcal/mol |
3.71522 kcal/mol |
11.7008 kcal/mol |
35 140@LB@ | |@LB@5'-GGC...GUUCC GCAAAUUUCAUG U CA U C CCUUC...UUC-3'@LB@ CCUGUC UUAUUCC CCAU UCUUU AAAU AGAAUGCU@LB@ ||::|| ||||||| |||| ||||| |||| |:||:|||@LB@ GGGUAG AAUAAGG GGUA AGAAA UUUA UUUUGCGA@LB@3'-AUU...AGCAU AG A C AAC AUUAA...CAA-5'@LB@ | |@LB@ 135 33@LB@@LB@@LB@Energy -16.00 kcal/mol@LB@Hybridization Energy -28.1573 kcal/mol@LB@Unfolding Energy - mRNA 3.71522 kcal/mol@LB@Unfolding Energy - sRNA 11.7008 kcal/mol@LB@@LB@Position - mRNA 36 -- 139@LB@Position - sRNA 34 -- 134@LB@Position Seed - mRNA 74 -- 80@LB@Position Seed - sRNA 15 -- 21@LB@ |
7 |
0.0001858 |
0.08823 |
bsu34210 |
yvfG |
-17.07 |
0.012126 |
85 -- 142 |
32 -- 86 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________84____________________________________________________________143\n_____________|_____________________________________________________________|\n5'-GAG...GUUGA______AAUAC___________C____GUU__A__________GCUCAC____________CAUUG...ACU-3'\n______________GGCUUU_____UUGUA__CUUG_UGAA___UC_UAUCCAUCUU______UCCCC_UUUCUU\n______________|||||:_____|||:|__||||_::||___||_||:||||||:______|||||_||||||\n______________CCGAAG_____AACGU__GAAC_GUUU___AG_AUGGGUAGAG______AGGGG_AAAGAA\n3'-AUU...ACUUA______C_________UA____C____GUU__C__________AAUA_______U______ACUUU...CAA-5'\n_____________|_____________________________________________________________|\n_____________87____________________________________________________________31\n |
119 -- 125 |
48 -- 54 |
-40.7387 kcal/mol |
11.2598 kcal/mol |
14.8836 kcal/mol |
84 143@LB@ | |@LB@5'-GAG...GUUGA AAUAC C GUU A GCUCAC CAUUG...ACU-3'@LB@ GGCUUU UUGUA CUUG UGAA UC UAUCCAUCUU UCCCC UUUCUU@LB@ |||||: |||:| |||| ::|| || ||:||||||: ||||| ||||||@LB@ CCGAAG AACGU GAAC GUUU AG AUGGGUAGAG AGGGG AAAGAA@LB@3'-AUU...ACUUA C UA C GUU C AAUA U ACUUU...CAA-5'@LB@ | |@LB@ 87 31@LB@@LB@@LB@Energy -17.07 kcal/mol@LB@Hybridization Energy -40.7387 kcal/mol@LB@Unfolding Energy - mRNA 11.2598 kcal/mol@LB@Unfolding Energy - sRNA 14.8836 kcal/mol@LB@@LB@Position - mRNA 85 -- 142@LB@Position - sRNA 32 -- 86@LB@Position Seed - mRNA 119 -- 125@LB@Position Seed - sRNA 48 -- 54@LB@ |
8 |
0.0001871 |
0.08823 |
bsu22860 |
yphA |
-19.72 |
0.003251 |
3 -- 123 |
37 -- 178 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pm: membrane component' |
|
_____________2_______________________________________________________________________________________________________124\n_____________|_______________________________________________________________________________________________________|\n5'-UCG...AAGGC________CCG______________________AC_G__C_______GAUUC______________AAGCUUUGAGUUUUU________CUGUCUU_______GAUCA...UUA-3'\n______________UUGUCGCU___UCA_________UAGUGAAUGG__U_GU_GCGAUCU_____GAC__UC_UGCCUG_______________UCUCUUGU_______UUCCCAU\n______________|||||:||___|||_________||:|||||||__|_||_||:||||_____:||__||_|:||::_______________||||||:|_______|:|||||\n______________AACAGUGA___AGU_________AUUACUUACC__A_CA_CGUUAGA_____UUG__AG_AUGGGU_______________AGAGAAUA_______AGGGGUA\n3'-AUU...AUUAC________AAG___AGAAGUUUC__________GA_G__A_______ACCGU___UU__C___________________________________________AAGAA...CAA-5'\n_____________|_______________________________________________________________________________________________________|\n_____________179_____________________________________________________________________________________________________36\n |
117 -- 123 |
37 -- 43 |
-53.1639 kcal/mol |
19.1133 kcal/mol |
22.4377 kcal/mol |
2 124@LB@ | |@LB@5'-UCG...AAGGC CCG AC G C GAUUC AAGCUUUGAGUUUUU CUGUCUU GAUCA...UUA-3'@LB@ UUGUCGCU UCA UAGUGAAUGG U GU GCGAUCU GAC UC UGCCUG UCUCUUGU UUCCCAU@LB@ |||||:|| ||| ||:||||||| | || ||:|||| :|| || |:||:: ||||||:| |:|||||@LB@ AACAGUGA AGU AUUACUUACC A CA CGUUAGA UUG AG AUGGGU AGAGAAUA AGGGGUA@LB@3'-AUU...AUUAC AAG AGAAGUUUC GA G A ACCGU UU C AAGAA...CAA-5'@LB@ | |@LB@ 179 36@LB@@LB@@LB@Energy -19.72 kcal/mol@LB@Hybridization Energy -53.1639 kcal/mol@LB@Unfolding Energy - mRNA 19.1133 kcal/mol@LB@Unfolding Energy - sRNA 22.4377 kcal/mol@LB@@LB@Position - mRNA 3 -- 123@LB@Position - sRNA 37 -- 178@LB@Position Seed - mRNA 117 -- 123@LB@Position Seed - sRNA 37 -- 43@LB@ |
9 |
0.0002071 |
0.08823 |
bsu08425 |
mprF |
-16.98 |
0.012672 |
3 -- 50 |
34 -- 81 |
phosphatidylglycerol lysyltransferase |
|
_____________2_______________________________________________51\n_____________|_______________________________________________|\n_________5'-AC__________GU_______U__AU__________AUCAC________CAUUC...AUC-3'\n______________UGUUGU_AUC___GUAAAU_AU____UCCAUUUC_____UUCCUCAU\n______________:||||:_|||___|:|||:_||____:||||:||_____||||:|||\n______________GCAACG_UAG___CGUUUG_UA____GGGUAGAG_____AAGGGGUA\n3'-AUU...CCGAA______U___AAC______U__GCAU________AAU__________AAGAA...CAA-5'\n_____________|_______________________________________________|\n_____________82______________________________________________33\n |
39 -- 45 |
37 -- 43 |
-29.0114 kcal/mol |
1.80779 kcal/mol |
13.626 kcal/mol |
2 51@LB@ | |@LB@ 5'-AC GU U AU AUCAC CAUUC...AUC-3'@LB@ UGUUGU AUC GUAAAU AU UCCAUUUC UUCCUCAU@LB@ :||||: ||| |:|||: || :||||:|| ||||:|||@LB@ GCAACG UAG CGUUUG UA GGGUAGAG AAGGGGUA@LB@3'-AUU...CCGAA U AAC U GCAU AAU AAGAA...CAA-5'@LB@ | |@LB@ 82 33@LB@@LB@@LB@Energy -16.98 kcal/mol@LB@Hybridization Energy -29.0114 kcal/mol@LB@Unfolding Energy - mRNA 1.80779 kcal/mol@LB@Unfolding Energy - sRNA 13.626 kcal/mol@LB@@LB@Position - mRNA 3 -- 50@LB@Position - sRNA 34 -- 81@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 37 -- 43@LB@ |
10 |
0.0002277 |
0.08823 |
bsu05690 |
ydhB |
-21.23 |
0.001523 |
113 -- 150 |
136 -- 182 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pm: membrane component' |
bsu12400 |
_____________112_______________________________151\n_____________|_________________________________|\n5'-CAU...UGUUU__________________C______ACC_____CAGAA...UCC-3'\n______________UUCUUCGUCAAUAGGACA____CAU___UCCGC\n______________:|||||:||||:||||||____|||___|||||\n______________GAGAAGUAGUUGUCCUGU____GUA___AGGCG\n3'-AUU...AAAAU__________________AACU___AC______UCGUU...CAA-5'\n_____________|_________________________________|\n_____________183_______________________________135\n |
132 -- 138 |
150 -- 156 |
-33.3473 kcal/mol |
6.29637 kcal/mol |
7.50175 kcal/mol |
112 151@LB@ | |@LB@5'-CAU...UGUUU C ACC CAGAA...UCC-3'@LB@ UUCUUCGUCAAUAGGACA CAU UCCGC@LB@ :|||||:||||:|||||| ||| |||||@LB@ GAGAAGUAGUUGUCCUGU GUA AGGCG@LB@3'-AUU...AAAAU AACU AC UCGUU...CAA-5'@LB@ | |@LB@ 183 135@LB@@LB@@LB@Energy -21.23 kcal/mol@LB@Hybridization Energy -33.3473 kcal/mol@LB@Unfolding Energy - mRNA 6.29637 kcal/mol@LB@Unfolding Energy - sRNA 7.50175 kcal/mol@LB@@LB@Position - mRNA 113 -- 150@LB@Position - sRNA 136 -- 182@LB@Position Seed - mRNA 132 -- 138@LB@Position Seed - sRNA 150 -- 156@LB@ |
11 |
0.0003253 |
0.1011 |
bsu31319 |
yuzI |
-20.00 |
0.002830 |
16 -- 82 |
99 -- 165 |
Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 16704729; Product type f : factor |
|
_____________15______________________________________________________________________83\n_____________|_______________________________________________________________________|\n5'-UAA...CAGUC_____U___UUC__U_G___________G_U____U______UUUUCCUCACUC_________A__G____CAUCA...ACU-3'\n______________CUUCA_UCA___GG_C_AUUG_C__UGU_C_CAGC__GUUCC____________GUCACUUUC_UA_CUUC\n______________|||||_|||___||_|_||||_|__|||_|_||||__|||||____________|||||||||_:|_||||\n______________GAAGU_AGU___CC_G_UAAC_G__ACA_G_GUCG__CAAGG____________CAGUGAAAG_GU_GAAG\n3'-AUU...AAUGA_________UGU__U______U_UA___G_C____UU_____UAUAUUACAA___________A__A____UUUCA...CAA-5'\n_____________|_______________________________________________________________________|\n_____________166_____________________________________________________________________98\n |
68 -- 74 |
107 -- 113 |
-43.9371 kcal/mol |
8.77558 kcal/mol |
17.9339 kcal/mol |
15 83@LB@ | |@LB@5'-UAA...CAGUC U UUC U G G U U UUUUCCUCACUC A G CAUCA...ACU-3'@LB@ CUUCA UCA GG C AUUG C UGU C CAGC GUUCC GUCACUUUC UA CUUC@LB@ ||||| ||| || | |||| | ||| | |||| ||||| ||||||||| :| ||||@LB@ GAAGU AGU CC G UAAC G ACA G GUCG CAAGG CAGUGAAAG GU GAAG@LB@3'-AUU...AAUGA UGU U U UA G C UU UAUAUUACAA A A UUUCA...CAA-5'@LB@ | |@LB@ 166 98@LB@@LB@@LB@Energy -20.00 kcal/mol@LB@Hybridization Energy -43.9371 kcal/mol@LB@Unfolding Energy - mRNA 8.77558 kcal/mol@LB@Unfolding Energy - sRNA 17.9339 kcal/mol@LB@@LB@Position - mRNA 16 -- 82@LB@Position - sRNA 99 -- 165@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 107 -- 113@LB@ |
12 |
0.0004273 |
0.1011 |
bsu13640 |
spo0E |
-21.66 |
0.001221 |
136 -- 180 |
32 -- 78 |
aspartyl-phosphate phosphatase Spo0E |
|
_____________135________________________________________________181\n_____________|__________________________________________________|\n5'-GGC...UAAUC______AAU__________A______A___AAA_________________AGCGG...AUG-3'\n______________UGUAAU____GC__ACAAU___ACCC_AUC___CUUGUUUCCUAUUUCUU\n______________||:|||____||__|||||___||||_|||___|||:||:||:|||||||\n______________ACGUUA____CG__UGUUA___UGGG_UAG___GAAUAAGGGGUAAAGAA\n3'-AUU...AAGCA______GAAC__UU_____GCA________A___________________ACUUU...CAA-5'\n_____________|__________________________________________________|\n_____________79_________________________________________________31\n |
172 -- 178 |
34 -- 40 |
-36.2602 kcal/mol |
3.78665 kcal/mol |
13.8985 kcal/mol |
135 181@LB@ | |@LB@5'-GGC...UAAUC AAU A A AAA AGCGG...AUG-3'@LB@ UGUAAU GC ACAAU ACCC AUC CUUGUUUCCUAUUUCUU@LB@ ||:||| || ||||| |||| ||| |||:||:||:|||||||@LB@ ACGUUA CG UGUUA UGGG UAG GAAUAAGGGGUAAAGAA@LB@3'-AUU...AAGCA GAAC UU GCA A ACUUU...CAA-5'@LB@ | |@LB@ 79 31@LB@@LB@@LB@Energy -21.66 kcal/mol@LB@Hybridization Energy -36.2602 kcal/mol@LB@Unfolding Energy - mRNA 3.78665 kcal/mol@LB@Unfolding Energy - sRNA 13.8985 kcal/mol@LB@@LB@Position - mRNA 136 -- 180@LB@Position - sRNA 32 -- 78@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 34 -- 40@LB@ |
13 |
0.0004662 |
0.1011 |
bsu39950 |
yxaJ |
-7.42 |
0.718209 |
218 -- 252 |
31 -- 81 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15743949 15849754 16850406; Product type pm: membrane component' |
|
_____________217_________________________________________253\n_____________|___________________________________________|\n5'-CAU...AAUAG___G______A__A_____________________GC______UUUUU...CGG-3'\n______________CGU_GCGAUC_UG_CAA__________CCAUUUCU__GUUUCU\n______________|||_||:|||_||_|||__________||||:|||__:||:|:\n______________GCA_CGUUAG_AC_GUU__________GGUAGAGA__UAAGGG\n3'-AUU...CCGAA___A______A__C___UGUUAGCAUG________A_______GUAAA...CAA-5'\n_____________|___________________________________________|\n_____________82__________________________________________30\n |
236 -- 242 |
47 -- 53 |
-25.2058 kcal/mol |
7.74885 kcal/mol |
10.909 kcal/mol |
217 253@LB@ | |@LB@5'-CAU...AAUAG G A A GC UUUUU...CGG-3'@LB@ CGU GCGAUC UG CAA CCAUUUCU GUUUCU@LB@ ||| ||:||| || ||| ||||:||| :||:|:@LB@ GCA CGUUAG AC GUU GGUAGAGA UAAGGG@LB@3'-AUU...CCGAA A A C UGUUAGCAUG A GUAAA...CAA-5'@LB@ | |@LB@ 82 30@LB@@LB@@LB@Energy -7.42 kcal/mol@LB@Hybridization Energy -25.2058 kcal/mol@LB@Unfolding Energy - mRNA 7.74885 kcal/mol@LB@Unfolding Energy - sRNA 10.909 kcal/mol@LB@@LB@Position - mRNA 218 -- 252@LB@Position - sRNA 31 -- 81@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 47 -- 53@LB@ |
14 |
0.0004671 |
0.1011 |
bsu04470 |
dctP |
-11.58 |
0.162472 |
124 -- 147 |
15 -- 44 |
C4-dicarboxylate transport protein |
bsu02340 bsu10220 |
_____________123____________________________148\n_____________|______________________________|\n5'-AAA...UAAAC_______GA__________A__________AUCAU...AAC-3'\n______________UUCCCCA___CU_____GU_UGAAAACGCU\n______________|||||||___||_____:|_||||||||||\n______________AAGGGGU___GA_____UA_ACUUUUGCGA\n3'-AUU...AGAAU_______AAA__AACUU__A__________AUUAA...CAA-5'\n_____________|______________________________|\n_____________45_____________________________14\n |
141 -- 147 |
15 -- 21 |
-23.6241 kcal/mol |
3.82582 kcal/mol |
8.2119 kcal/mol |
123 148@LB@ | |@LB@5'-AAA...UAAAC GA A AUCAU...AAC-3'@LB@ UUCCCCA CU GU UGAAAACGCU@LB@ ||||||| || :| ||||||||||@LB@ AAGGGGU GA UA ACUUUUGCGA@LB@3'-AUU...AGAAU AAA AACUU A AUUAA...CAA-5'@LB@ | |@LB@ 45 14@LB@@LB@@LB@Energy -11.58 kcal/mol@LB@Hybridization Energy -23.6241 kcal/mol@LB@Unfolding Energy - mRNA 3.82582 kcal/mol@LB@Unfolding Energy - sRNA 8.2119 kcal/mol@LB@@LB@Position - mRNA 124 -- 147@LB@Position - sRNA 15 -- 44@LB@Position Seed - mRNA 141 -- 147@LB@Position Seed - sRNA 15 -- 21@LB@ |
15 |
0.0004798 |
0.1011 |
bsu04380 |
ydaT |
-18.00 |
0.007663 |
13 -- 34 |
33 -- 57 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________12________________________35\n_____________|_________________________|\n5'-AAC...CUUUU____G____________________CUAUC...AAG-3'\n______________UGCU_AUCUU___UUUCCCAUUUCU\n______________|:|:_||||:___||:|||||||||\n______________AUGG_UAGAG___AAGGGGUAAAGA\n3'-AUU...UUAGC____G_____AAU____________AACUU...CAA-5'\n_____________|_________________________|\n_____________58________________________32\n |
28 -- 34 |
33 -- 39 |
-24.9146 kcal/mol |
0.801206 kcal/mol |
9.08864 kcal/mol |
12 35@LB@ | |@LB@5'-AAC...CUUUU G CUAUC...AAG-3'@LB@ UGCU AUCUU UUUCCCAUUUCU@LB@ |:|: ||||: ||:|||||||||@LB@ AUGG UAGAG AAGGGGUAAAGA@LB@3'-AUU...UUAGC G AAU AACUU...CAA-5'@LB@ | |@LB@ 58 32@LB@@LB@@LB@Energy -18.00 kcal/mol@LB@Hybridization Energy -24.9146 kcal/mol@LB@Unfolding Energy - mRNA 0.801206 kcal/mol@LB@Unfolding Energy - sRNA 9.08864 kcal/mol@LB@@LB@Position - mRNA 13 -- 34@LB@Position - sRNA 33 -- 57@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 33 -- 39@LB@ |
16 |
0.0004911 |
0.1011 |
bsu34650 |
yvdC |
-21.31 |
0.001462 |
17 -- 94 |
101 -- 185 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type pe: enzyme' |
|
_____________16_______________________________________________________________________95\n_____________|________________________________________________________________________|\n5'-AUA...UUUUA___G_______UCCCC_____U______C_________AAUACA____A________U____C__G______CCGCA...AGG-3'\n______________UAC_CUUCAUU_____CAGGG__UUGAU_____CCGCA________CA_AUG__GUU_UCAU_UU_UCAUCU\n______________|||_||||||:_____||||:__||||:_____|||||________||_||:__|||_|||:_||_||||||\n______________AUG_GAAGUAG_____GUCCU__AACUG_____GGCGU________GU_UAU__CAA_AGUG_AA_AGUAGA\n3'-AUU...AAAAA___A_______UU________GU_____UAACA_____CGUUCAAG__A___UA___C____A__G______AGUUU...CAA-5'\n_____________|________________________________________________________________________|\n_____________186______________________________________________________________________100\n |
36 -- 42 |
159 -- 165 |
-36.2616 kcal/mol |
8.0324 kcal/mol |
15.7762 kcal/mol |
16 95@LB@ | |@LB@5'-AUA...UUUUA G UCCCC U C AAUACA A U C G CCGCA...AGG-3'@LB@ UAC CUUCAUU CAGGG UUGAU CCGCA CA AUG GUU UCAU UU UCAUCU@LB@ ||| ||||||: ||||: ||||: ||||| || ||: ||| |||: || ||||||@LB@ AUG GAAGUAG GUCCU AACUG GGCGU GU UAU CAA AGUG AA AGUAGA@LB@3'-AUU...AAAAA A UU GU UAACA CGUUCAAG A UA C A G AGUUU...CAA-5'@LB@ | |@LB@ 186 100@LB@@LB@@LB@Energy -21.31 kcal/mol@LB@Hybridization Energy -36.2616 kcal/mol@LB@Unfolding Energy - mRNA 8.0324 kcal/mol@LB@Unfolding Energy - sRNA 15.7762 kcal/mol@LB@@LB@Position - mRNA 17 -- 94@LB@Position - sRNA 101 -- 185@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 159 -- 165@LB@ |
17 |
0.0005293 |
0.1011 |
bsu19390 |
yojN |
-14.35 |
0.045317 |
34 -- 87 |
125 -- 170 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15491156; Product type pe : enzyme' |
|
_____________33_______________________________________________________88\n_____________|________________________________________________________|\n5'-AAC...UGCAU_____A_____G____AGC_____AUUAUC_____AAC___AA_____________GUGCG...CUA-3'\n______________UUAUU_UUCAU_AACA___GGACG______UGACA____CC__GCGGCAA_UUCCG\n______________|||:|_|||||_||||___||||:______|||||____||__||:||||_||||:\n______________AAUGA_AAGUA_UUGU___CCUGU______ACUGU____GG__CGUCGUU_AAGGU\n3'-AUU...AAAAA_____G_____G____________A__________AACA___________C_____AUAUU...CAA-5'\n_____________|________________________________________________________|\n_____________171______________________________________________________124\n |
76 -- 82 |
131 -- 137 |
-33.3587 kcal/mol |
7.78061 kcal/mol |
10.3745 kcal/mol |
33 88@LB@ | |@LB@5'-AAC...UGCAU A G AGC AUUAUC AAC AA GUGCG...CUA-3'@LB@ UUAUU UUCAU AACA GGACG UGACA CC GCGGCAA UUCCG@LB@ |||:| ||||| |||| ||||: ||||| || ||:|||| ||||:@LB@ AAUGA AAGUA UUGU CCUGU ACUGU GG CGUCGUU AAGGU@LB@3'-AUU...AAAAA G G A AACA C AUAUU...CAA-5'@LB@ | |@LB@ 171 124@LB@@LB@@LB@Energy -14.35 kcal/mol@LB@Hybridization Energy -33.3587 kcal/mol@LB@Unfolding Energy - mRNA 7.78061 kcal/mol@LB@Unfolding Energy - sRNA 10.3745 kcal/mol@LB@@LB@Position - mRNA 34 -- 87@LB@Position - sRNA 125 -- 170@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 131 -- 137@LB@ |
18 |
0.0005418 |
0.1011 |
bsu07080 |
yesZ |
-22.48 |
0.000806 |
260 -- 300 |
118 -- 160 |
beta-galactosidase YesZ |
|
_____________259_______________301\n_____________|_________________|\n5'-GAU...ACGAU_________________UCAUG...AUG-3'\n______________UCAGCAGGACAUUGACA\n______________|||:|||||||||||||\n______________AGUUGUCCUGUAACUGU\n3'-AUU...GAAGU_________________AACAG...CAA-5'\n_____________|_________________|\n_____________161_______________117\n |
270 -- 276 |
144 -- 150 |
-28.5551 kcal/mol |
3.65993 kcal/mol |
6.86594 kcal/mol |
259 301@LB@ | |@LB@5'-GAU...ACGAU UCAUG...AUG-3'@LB@ UCAGCAGGACAUUGACA@LB@ |||:|||||||||||||@LB@ AGUUGUCCUGUAACUGU@LB@3'-AUU...GAAGU AACAG...CAA-5'@LB@ | |@LB@ 161 117@LB@@LB@@LB@Energy -22.48 kcal/mol@LB@Hybridization Energy -28.5551 kcal/mol@LB@Unfolding Energy - mRNA 3.65993 kcal/mol@LB@Unfolding Energy - sRNA 6.86594 kcal/mol@LB@@LB@Position - mRNA 260 -- 300@LB@Position - sRNA 118 -- 160@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 144 -- 150@LB@ |
19 |
0.0005622 |
0.1011 |
bsu33310 |
fhuB |
-20.25 |
0.002499 |
30 -- 116 |
99 -- 184 |
iron(3+)-hydroxamate import system permease protein FhuB |
bsu01620 |
_____________29__________________________________________________________________117\n_____________|___________________________________________________________________|\n5'-AGG...UGCAA___A__________AAAAA____________UCC_______UU_____U___G______A_______ACCUU...AAG-3'\n______________UCA_UAACAGGGCA___________CGCGGC___GAGUUUC__GUAUA_AUG__GUCAU__UCUCAU\n______________|||_:||||||:||___________|||:||___:||||:|__:||||_|||__||||:__||||||\n______________AGU_GUUGUCCUGU___________GCGUCG___UUCAAGG__UAUAU_UAC__CAGUG__AGAGUA\n3'-AUU...UGAGA___A__________AACUGUAACAG___________________________AA_____AA______GAAGU...CAA-5'\n_____________|___________________________________________________________________|\n_____________185_________________________________________________________________98\n |
80 -- 86 |
126 -- 132 |
-44.6592 kcal/mol |
13.3222 kcal/mol |
14.475 kcal/mol |
29 117@LB@ | |@LB@5'-AGG...UGCAA A AAAAA UCC UU U G A ACCUU...AAG-3'@LB@ UCA UAACAGGGCA CGCGGC GAGUUUC GUAUA AUG GUCAU UCUCAU@LB@ ||| :||||||:|| |||:|| :||||:| :|||| ||| ||||: ||||||@LB@ AGU GUUGUCCUGU GCGUCG UUCAAGG UAUAU UAC CAGUG AGAGUA@LB@3'-AUU...UGAGA A AACUGUAACAG AA AA GAAGU...CAA-5'@LB@ | |@LB@ 185 98@LB@@LB@@LB@Energy -20.25 kcal/mol@LB@Hybridization Energy -44.6592 kcal/mol@LB@Unfolding Energy - mRNA 13.3222 kcal/mol@LB@Unfolding Energy - sRNA 14.475 kcal/mol@LB@@LB@Position - mRNA 30 -- 116@LB@Position - sRNA 99 -- 184@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 126 -- 132@LB@ |
20 |
0.0005654 |
0.1011 |
bsu03960 |
ycnK |
-22.14 |
0.000955 |
26 -- 173 |
12 -- 134 |
DeoR family transcriptional regulator |
|
_____________25________________________________________________________________________________________________________________________________________________________174\n_____________|_________________________________________________________________________________________________________________________________________________________|\n5'-AGG...GUUUC_______GGGUAUUCC_________AUUC_____GUCUAUUAUAC______CCCUUC__UU_C__________U__________C___UUUUCACAUUUUUU__________C__A____________C___A______CCUCU_________AUAGA...AAA-3'\n______________UUUCAUA_________UCACUUUCU____CAUCU___________CAGAGU______UG__U_GUUUUGUUGC_GUU____CAA_ACA______________AUC__AUCCA_UU_CUUG_UCUCCGU_UCU___AAAU______ACGCUUAA\n______________||:||||_________|||||||||____|||||___________||:|||______||__|_|:||:|||||_:|:____|||_|||______________|||__|:|||_:|_|||:_||:||:|_|||___||||______||||||||\n______________AAGGUAU_________AGUGAAAGA____GUAGA___________GUUUCA______AC__A_CGAAGCAACG_UAG____GUU_UGU______________UAG__UGGGU_GA_GAAU_AGGGGUA_AGA___UUUA______UGCGAAUU\n3'-AUU...CGUUC_______AUUACAAC___________________A________________UU______UU_C__________U___AACC________________________CA_____A_______A_______A___AAC____AACUUU________AAAGA...CAA-5'\n_____________|_________________________________________________________________________________________________________________________________________________________|\n_____________135_______________________________________________________________________________________________________________________________________________________11\n |
167 -- 173 |
12 -- 18 |
-57.1101 kcal/mol |
10.5528 kcal/mol |
25.6552 kcal/mol |
25 174@LB@ | |@LB@5'-AGG...GUUUC GGGUAUUCC AUUC GUCUAUUAUAC CCCUUC UU C U C UUUUCACAUUUUUU C A C A CCUCU AUAGA...AAA-3'@LB@ UUUCAUA UCACUUUCU CAUCU CAGAGU UG U GUUUUGUUGC GUU CAA ACA AUC AUCCA UU CUUG UCUCCGU UCU AAAU ACGCUUAA@LB@ ||:|||| ||||||||| ||||| ||:||| || | |:||:||||| :|: ||| ||| ||| |:||| :| |||: ||:||:| ||| |||| ||||||||@LB@ AAGGUAU AGUGAAAGA GUAGA GUUUCA AC A CGAAGCAACG UAG GUU UGU UAG UGGGU GA GAAU AGGGGUA AGA UUUA UGCGAAUU@LB@3'-AUU...CGUUC AUUACAAC A UU UU C U AACC CA A A A AAC AACUUU AAAGA...CAA-5'@LB@ | |@LB@ 135 11@LB@@LB@@LB@Energy -22.14 kcal/mol@LB@Hybridization Energy -57.1101 kcal/mol@LB@Unfolding Energy - mRNA 10.5528 kcal/mol@LB@Unfolding Energy - sRNA 25.6552 kcal/mol@LB@@LB@Position - mRNA 26 -- 173@LB@Position - sRNA 12 -- 134@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 12 -- 18@LB@ |
21 |
0.0005858 |
0.1011 |
bsu27120 |
sigV |
-13.38 |
0.071859 |
12 -- 26 |
38 -- 54 |
RNA polymerase sigma factor SigV |
|
______________12__________________________27\n______________|___________________________|\n___________5'-______GUUUG_________________AAAAC...AAG-3'\n______________AAUAAU_____UCAUCUCUUA__CCCCA\n______________||:|||_____:|||||||||__|||||\n______________UUGUUA_____GGUAGAGAAU__GGGGU\n3'-AUU...ACCGU______GCAUG__________AA_____AAAGA...CAA-5'\n_____________|____________________________|\n_____________55___________________________37\n |
15 -- 21 |
45 -- 51 |
-23.0819 kcal/mol |
1.75763 kcal/mol |
10.671 kcal/mol |
12 27@LB@ | |@LB@ 5'- GUUUG AAAAC...AAG-3'@LB@ AAUAAU UCAUCUCUUA CCCCA@LB@ ||:||| :||||||||| |||||@LB@ UUGUUA GGUAGAGAAU GGGGU@LB@3'-AUU...ACCGU GCAUG AA AAAGA...CAA-5'@LB@ | |@LB@ 55 37@LB@@LB@@LB@Energy -13.38 kcal/mol@LB@Hybridization Energy -23.0819 kcal/mol@LB@Unfolding Energy - mRNA 1.75763 kcal/mol@LB@Unfolding Energy - sRNA 10.671 kcal/mol@LB@@LB@Position - mRNA 12 -- 26@LB@Position - sRNA 38 -- 54@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 45 -- 51@LB@ |
22 |
0.0005922 |
0.1011 |
bsu09965 |
yhaJ |
-9.39 |
0.394896 |
264 -- 275 |
174 -- 185 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 16845009; Product type pf : factor' |
|
_____________263___________276\n_____________|_____________|\n5'-ACU...AACCC___AU________UUGUU...CCU-3'\n______________CAU__UUCGCAGU\n______________|||__|:|||||:\n______________GUA__AGGCGUCG\n3'-AUU...UAACU___AC________UUCAA...CAA-5'\n_____________|_____________|\n_____________186___________173\n |
68 -- 74 |
133 -- 139 |
-12.4018 kcal/mol |
1.72698 kcal/mol |
5.12932 kcal/mol |
263 276@LB@ | |@LB@5'-ACU...AACCC AU UUGUU...CCU-3'@LB@ CAU UUCGCAGU@LB@ ||| |:|||||:@LB@ GUA AGGCGUCG@LB@3'-AUU...UAACU AC UUCAA...CAA-5'@LB@ | |@LB@ 186 173@LB@@LB@@LB@Energy -9.39 kcal/mol@LB@Hybridization Energy -12.4018 kcal/mol@LB@Unfolding Energy - mRNA 1.72698 kcal/mol@LB@Unfolding Energy - sRNA 5.12932 kcal/mol@LB@@LB@Position - mRNA 264 -- 275@LB@Position - sRNA 174 -- 185@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 133 -- 139@LB@ |
23 |
0.0006135 |
0.1011 |
bsu23610 |
nudF |
-13.21 |
0.077687 |
6 -- 79 |
37 -- 88 |
adp-ribose pyrophosphatase |
|
_____________5__________________________________________________________________________80\n_____________|__________________________________________________________________________|\n______5'-CUUUU_________AGAUC_______UCA__UAUUG__A_____GU____A_____UUAACUUCGCUCGA_________GCUUU...AAG-3'\n______________AUGGCUUUG_____CAAUCUU___CA_____AA_UGUGC__CCAU_CUCUU______________AUUUCCCAU\n______________|||||||:|_____|||||||___||_____||_:||:|__||||_|||||______________|||:|||||\n______________UACCGAAGC_____GUUAGAA___GU_____UU_GCAUG__GGUA_GAGAA______________UAAGGGGUA\n3'-AUU...UUACU_________AAC_________CC___UUG____A________________________________________AAGAA...CAA-5'\n_____________|__________________________________________________________________________|\n_____________89_________________________________________________________________________36\n |
73 -- 79 |
37 -- 43 |
-36.6547 kcal/mol |
11.779 kcal/mol |
14.1528 kcal/mol |
5 80@LB@ | |@LB@ 5'-CUUUU AGAUC UCA UAUUG A GU A UUAACUUCGCUCGA GCUUU...AAG-3'@LB@ AUGGCUUUG CAAUCUU CA AA UGUGC CCAU CUCUU AUUUCCCAU@LB@ |||||||:| ||||||| || || :||:| |||| ||||| |||:|||||@LB@ UACCGAAGC GUUAGAA GU UU GCAUG GGUA GAGAA UAAGGGGUA@LB@3'-AUU...UUACU AAC CC UUG A AAGAA...CAA-5'@LB@ | |@LB@ 89 36@LB@@LB@@LB@Energy -13.21 kcal/mol@LB@Hybridization Energy -36.6547 kcal/mol@LB@Unfolding Energy - mRNA 11.779 kcal/mol@LB@Unfolding Energy - sRNA 14.1528 kcal/mol@LB@@LB@Position - mRNA 6 -- 79@LB@Position - sRNA 37 -- 88@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 37 -- 43@LB@ |
24 |
0.0006259 |
0.1011 |
bsu03380 |
yckB |
-16.82 |
0.013754 |
20 -- 129 |
16 -- 148 |
ABC transporter substrate-binding protein |
|
_____________19_________________________________________________________________________________________________________________________________________________130\n_____________|__________________________________________________________________________________________________________________________________________________|\n5'-UGC...UCCUU__U____C_______CA___U___A________UUUUUUCA_______C_____CC_____U__AC_______________________________CCC________G_____UGUAUA_A__A___GAACUU____________GAUCA...CCA-3'\n______________GG_ACGU_UGGCAUU__UCC_UGG_CAA_UUCC___________UCAC__UCUU__CUUCA_AG_________GCUUU_____________UAAACA_____ACCCAU_CUUUU______C_CA_UUC_______UUUGAAAACGC\n______________||_||:|_||:||||__|||_::|_|||_||||___________||||__|||:__|||||_||_________||||:_____________:|||||_____||||||_||:||______|_||_|||_______|||||||||||\n______________CC_UGUA_ACUGUAA__AGG_GUC_GUU_AAGG___________AGUG__AGAG__GAAGU_UC_________CGAAG_____________GUUUGU_____UGGGUA_GAGAA______G_GU_AAG_______AAACUUUUGCG\n3'-AUU...GUUGU_______________C____C_______C____UAUAUUACAAC____AA____UA_____U__AUUACUUAC_____CAACGUUAGAACC______UAGCA____________UAAGG_____A___AAACUUU___________AAUUA...CAA-5'\n_____________|__________________________________________________________________________________________________________________________________________________|\n_____________149________________________________________________________________________________________________________________________________________________15\n |
123 -- 129 |
16 -- 22 |
-61.2162 kcal/mol |
13.3554 kcal/mol |
33.3199 kcal/mol |
19 130@LB@ | |@LB@5'-UGC...UCCUU U C CA U A UUUUUUCA C CC U AC CCC G UGUAUA A A GAACUU GAUCA...CCA-3'@LB@ GG ACGU UGGCAUU UCC UGG CAA UUCC UCAC UCUU CUUCA AG GCUUU UAAACA ACCCAU CUUUU C CA UUC UUUGAAAACGC@LB@ || ||:| ||:|||| ||| ::| ||| |||| |||| |||: ||||| || ||||: :||||| |||||| ||:|| | || ||| |||||||||||@LB@ CC UGUA ACUGUAA AGG GUC GUU AAGG AGUG AGAG GAAGU UC CGAAG GUUUGU UGGGUA GAGAA G GU AAG AAACUUUUGCG@LB@3'-AUU...GUUGU C C C UAUAUUACAAC AA UA U AUUACUUAC CAACGUUAGAACC UAGCA UAAGG A AAACUUU AAUUA...CAA-5'@LB@ | |@LB@ 149 15@LB@@LB@@LB@Energy -16.82 kcal/mol@LB@Hybridization Energy -61.2162 kcal/mol@LB@Unfolding Energy - mRNA 13.3554 kcal/mol@LB@Unfolding Energy - sRNA 33.3199 kcal/mol@LB@@LB@Position - mRNA 20 -- 129@LB@Position - sRNA 16 -- 148@LB@Position Seed - mRNA 123 -- 129@LB@Position Seed - sRNA 16 -- 22@LB@ |
25 |
0.0006626 |
0.1027 |
bsu07955 |
yfkA |
-14.87 |
0.035327 |
3 -- 70 |
36 -- 108 |
radical SAM protein YfkA |
|
_____________2______________71\n_____________|______________|\n5'-AGU...GCUAC______________AAUCA...ACG-3'\n______________UUGCGAUCUUGGCA\n______________||||:|||||||||\n______________AACGUUAGAACCGU\n3'-AUU...GAAGC______________UUGUU...CAA-5'\n_____________|______________|\n_____________109____________35\n |
130 -- 136 |
66 -- 72 |
-22.3996 kcal/mol |
5.8798 kcal/mol |
4.6863 kcal/mol |
2 71@LB@ | |@LB@5'-AGU...GCUAC AAUCA...ACG-3'@LB@ UUGCGAUCUUGGCA@LB@ ||||:|||||||||@LB@ AACGUUAGAACCGU@LB@3'-AUU...GAAGC UUGUU...CAA-5'@LB@ | |@LB@ 109 35@LB@@LB@@LB@Energy -14.87 kcal/mol@LB@Hybridization Energy -22.3996 kcal/mol@LB@Unfolding Energy - mRNA 5.8798 kcal/mol@LB@Unfolding Energy - sRNA 4.6863 kcal/mol@LB@@LB@Position - mRNA 3 -- 70@LB@Position - sRNA 36 -- 108@LB@Position Seed - mRNA 130 -- 136@LB@Position Seed - sRNA 66 -- 72@LB@ |
26 |
0.0007049 |
0.1051 |
bsu24750 |
yqhB |
-20.67 |
0.002015 |
266 -- 294 |
134 -- 164 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type pm: membrane component' |
|
_____________265_____________________________295\n_____________|_______________________________|\n5'-UUC...CUCAU______________UUUU_____________AAUUUU-3'\n______________UUUGUUAACAGGAU_____CGUUG_CCGUAG\n______________||::|:|||||||:_____|:|||_|||:||\n______________AAGUAGUUGUCCUG_____GUAAC_GGCGUC\n3'-AUU...AUGAG______________UAACU_____A______GUUCA...CAA-5'\n_____________|_______________________________|\n_____________165_____________________________133\n |
273 -- 279 |
151 -- 157 |
-31.5872 kcal/mol |
2.9023 kcal/mol |
8.693 kcal/mol |
265 295@LB@ | |@LB@5'-UUC...CUCAU UUUU AAUUUU-3'@LB@ UUUGUUAACAGGAU CGUUG CCGUAG@LB@ ||::|:|||||||: |:||| |||:||@LB@ AAGUAGUUGUCCUG GUAAC GGCGUC@LB@3'-AUU...AUGAG UAACU A GUUCA...CAA-5'@LB@ | |@LB@ 165 133@LB@@LB@@LB@Energy -20.67 kcal/mol@LB@Hybridization Energy -31.5872 kcal/mol@LB@Unfolding Energy - mRNA 2.9023 kcal/mol@LB@Unfolding Energy - sRNA 8.693 kcal/mol@LB@@LB@Position - mRNA 266 -- 294@LB@Position - sRNA 134 -- 164@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 151 -- 157@LB@ |
27 |
0.0007779 |
0.1059 |
bsu31480 |
yuxJ |
-17.06 |
0.012234 |
48 -- 110 |
4 -- 55 |
MFS transporter |
|
_____________47______________________________________________________________111\n_____________|_______________________________________________________________|\n5'-UGC...AAUUC___U____GACAU___________CUAA____AA____UUUUCCCAGC_____C_________AAAUU...UUG-3'\n______________CCC_UCUC_____UUCUUCAUUUU____AAAU__UGAA__________CGCUU_GUUUCUUUU\n______________|||_||||_____|||::|||||:____||||__||||__________|||||_:||||||||\n______________GGG_AGAG_____AAGGGGUAAAG____UUUA__ACUU__________GCGAA_UAAAGAAAA\n3'-AUU...AGCAU___U____AAU_____________AAAC____A_____UU_____________U_________CAA-5'\n_____________|_______________________________________________________________|\n_____________56______________________________________________________________3\n |
104 -- 110 |
4 -- 10 |
-33.1771 kcal/mol |
7.88293 kcal/mol |
11.7347 kcal/mol |
47 111@LB@ | |@LB@5'-UGC...AAUUC U GACAU CUAA AA UUUUCCCAGC C AAAUU...UUG-3'@LB@ CCC UCUC UUCUUCAUUUU AAAU UGAA CGCUU GUUUCUUUU@LB@ ||| |||| |||::|||||: |||| |||| ||||| :||||||||@LB@ GGG AGAG AAGGGGUAAAG UUUA ACUU GCGAA UAAAGAAAA@LB@3'-AUU...AGCAU U AAU AAAC A UU U CAA-5'@LB@ | |@LB@ 56 3@LB@@LB@@LB@Energy -17.06 kcal/mol@LB@Hybridization Energy -33.1771 kcal/mol@LB@Unfolding Energy - mRNA 7.88293 kcal/mol@LB@Unfolding Energy - sRNA 11.7347 kcal/mol@LB@@LB@Position - mRNA 48 -- 110@LB@Position - sRNA 4 -- 55@LB@Position Seed - mRNA 104 -- 110@LB@Position Seed - sRNA 4 -- 10@LB@ |
28 |
0.0008121 |
0.1059 |
bsu37450 |
ywhK |
-15.95 |
0.020994 |
89 -- 155 |
41 -- 105 |
Evidence 1a: Function experimentally demonstrated in the studied strain; PubMedId: 12073041; Product type f: factor |
bsu37440 |
_____________88_______________________________________156\n_____________|________________________________________|\n5'-UAU...CCUCA_______GUA_______ACA__U_____U____A______GUUAU...UUC-3'\n______________GCAAUUU___CAAGCAA___CG_UACCC_UC_C_UAUUCU\n______________|||||:|___|||:|||___||_|||||_||_|_|||||:\n______________CGUUAGA___GUUUGUU___GC_AUGGG_AG_G_AUAAGG\n3'-AUU...AGCAA_______ACC_______A__________U__A_A______GGUAA...CAA-5'\n_____________|________________________________________|\n_____________106______________________________________40\n |
127 -- 133 |
61 -- 67 |
-28.9674 kcal/mol |
4.84834 kcal/mol |
9.64723 kcal/mol |
88 156@LB@ | |@LB@5'-UAU...CCUCA GUA ACA U U A GUUAU...UUC-3'@LB@ GCAAUUU CAAGCAA CG UACCC UC C UAUUCU@LB@ |||||:| |||:||| || ||||| || | |||||:@LB@ CGUUAGA GUUUGUU GC AUGGG AG G AUAAGG@LB@3'-AUU...AGCAA ACC A U A A GGUAA...CAA-5'@LB@ | |@LB@ 106 40@LB@@LB@@LB@Energy -15.95 kcal/mol@LB@Hybridization Energy -28.9674 kcal/mol@LB@Unfolding Energy - mRNA 4.84834 kcal/mol@LB@Unfolding Energy - sRNA 9.64723 kcal/mol@LB@@LB@Position - mRNA 89 -- 155@LB@Position - sRNA 41 -- 105@LB@Position Seed - mRNA 127 -- 133@LB@Position Seed - sRNA 61 -- 67@LB@ |
29 |
0.000814 |
0.1059 |
bsu35860 |
pgdS |
-7.84 |
0.648005 |
23 -- 34 |
130 -- 140 |
gamma-dl-glutamyl hydrolase |
|
______________23________________________________35\n______________|_________________________________|\n___________5'-________GGAAAUGAAUAAAA___A________AAGAA...AUA-3'\n______________AUUGAUAU______________UCC_GCAGCAGG\n______________|||||:||______________|||_||||||:|\n______________UAACUGUA______________AGG_CGUCGUUC\n3'-AUU...UCCUG________AC________________________AAGGU...CAA-5'\n_____________|__________________________________|\n_____________141________________________________129\n |
28 -- 34 |
130 -- 136 |
-20.8842 kcal/mol |
7.79874 kcal/mol |
6.50607 kcal/mol |
23 35@LB@ | |@LB@ 5'- GGAAAUGAAUAAAA A AAGAA...AUA-3'@LB@ AUUGAUAU UCC GCAGCAGG@LB@ |||||:|| ||| ||||||:|@LB@ UAACUGUA AGG CGUCGUUC@LB@3'-AUU...UCCUG AC AAGGU...CAA-5'@LB@ | |@LB@ 141 129@LB@@LB@@LB@Energy -7.84 kcal/mol@LB@Hybridization Energy -20.8842 kcal/mol@LB@Unfolding Energy - mRNA 7.79874 kcal/mol@LB@Unfolding Energy - sRNA 6.50607 kcal/mol@LB@@LB@Position - mRNA 23 -- 34@LB@Position - sRNA 130 -- 140@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 130 -- 136@LB@ |
30 |
0.0008394 |
0.1059 |
bsu25600 |
comER |
-17.70 |
0.008924 |
72 -- 169 |
82 -- 187 |
ComE operon protein 4 |
|
_____________71__________________________________________________170\n_____________|___________________________________________________|\n5'-AGC...AAUAA____UU____AU__U___UCAACCA_______GUGCA_________C____GUCAU...CAA-3'\n______________UUGC__UCUU__GC_GAU_______AUUCAUC_____UGUUCCCCG_UUUC\n______________||||__||||__||_:|:_______|::||||_____|:||||||:_||||\n______________AACG__AGAA__CG_UUG_______UGGGUAG_____AUAAGGGGU_AAAG\n3'-AUU...GAAGC____UU____C___U___UUAGCA________AGA________________AAACU...CAA-5'\n_____________|___________________________________________________|\n_____________188_________________________________________________81\n |
126 -- 132 |
38 -- 44 |
-31.3225 kcal/mol |
7.58891 kcal/mol |
13.8007 kcal/mol |
71 170@LB@ | |@LB@5'-AGC...AAUAA UU AU U UCAACCA GUGCA C GUCAU...CAA-3'@LB@ UUGC UCUU GC GAU AUUCAUC UGUUCCCCG UUUC@LB@ |||| |||| || :|: |::|||| |:||||||: ||||@LB@ AACG AGAA CG UUG UGGGUAG AUAAGGGGU AAAG@LB@3'-AUU...GAAGC UU C U UUAGCA AGA AAACU...CAA-5'@LB@ | |@LB@ 188 81@LB@@LB@@LB@Energy -17.70 kcal/mol@LB@Hybridization Energy -31.3225 kcal/mol@LB@Unfolding Energy - mRNA 7.58891 kcal/mol@LB@Unfolding Energy - sRNA 13.8007 kcal/mol@LB@@LB@Position - mRNA 72 -- 169@LB@Position - sRNA 82 -- 187@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 38 -- 44@LB@ |
31 |
0.0008564 |
0.1059 |
bsu10290 |
yhfN |
-10.46 |
0.260955 |
32 -- 88 |
131 -- 186 |
metalloprotease YhfN |
|
_____________31__________________89\n_____________|___________________|\n5'-AUG...GCAAG__________G________ACUUG...AAG-3'\n______________UGG_AUUG_C_GCAGCAGG\n______________||:_||||_|_||||||:|\n______________ACU_UAAC_G_CGUCGUUC\n3'-AUU...CUGUA___G____A_G________AAGGU...CAA-5'\n_____________|___________________|\n_____________187_________________130\n |
220 -- 226 |
130 -- 136 |
-18.5522 kcal/mol |
5.78917 kcal/mol |
6.22375 kcal/mol |
31 89@LB@ | |@LB@5'-AUG...GCAAG G ACUUG...AAG-3'@LB@ UGG AUUG C GCAGCAGG@LB@ ||: |||| | ||||||:|@LB@ ACU UAAC G CGUCGUUC@LB@3'-AUU...CUGUA G A G AAGGU...CAA-5'@LB@ | |@LB@ 187 130@LB@@LB@@LB@Energy -10.46 kcal/mol@LB@Hybridization Energy -18.5522 kcal/mol@LB@Unfolding Energy - mRNA 5.78917 kcal/mol@LB@Unfolding Energy - sRNA 6.22375 kcal/mol@LB@@LB@Position - mRNA 32 -- 88@LB@Position - sRNA 131 -- 186@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 130 -- 136@LB@ |
32 |
0.0008744 |
0.1059 |
bsu09430 |
citR |
-15.39 |
0.027619 |
23 -- 103 |
39 -- 111 |
LysR family transcriptional regulator |
|
_____________22______________________________________________________________________________________104\n_____________|_______________________________________________________________________________________|\n5'-UGU...ACGCC________C_A____UAU__C______________UACACA_______CCCUU________CGUAAU__________G_________CUAUC...CCG-3'\n______________CUUUUUCA_C_UCAA___GG_UGAUGGAU_GUUUC______UGUAAUU________UAAUC______GUA_CCAUUU__UAUUCCCC\n______________||||:|||_|_||||___:|_|:|||:||_|:|||______||:|||:________:||||______|||_||||:|__||||||||\n______________GAAAGAGU_G_AGUU___UC_AUUACUUA_CGAAG______ACGUUAG________GUUAG______CAU_GGUAGA__AUAAGGGG\n3'-AUU...ACAGU________A_A__________________C_____CA___________AACCGUUU______________G______GA________UAAAG...CAA-5'\n_____________|_______________________________________________________________________________________|\n_____________112_____________________________________________________________________________________38\n |
97 -- 103 |
39 -- 45 |
-43.1846 kcal/mol |
11.0009 kcal/mol |
20.821 kcal/mol |
22 104@LB@ | |@LB@5'-UGU...ACGCC C A UAU C UACACA CCCUU CGUAAU G CUAUC...CCG-3'@LB@ CUUUUUCA C UCAA GG UGAUGGAU GUUUC UGUAAUU UAAUC GUA CCAUUU UAUUCCCC@LB@ ||||:||| | |||| :| |:|||:|| |:||| ||:|||: :|||| ||| ||||:| ||||||||@LB@ GAAAGAGU G AGUU UC AUUACUUA CGAAG ACGUUAG GUUAG CAU GGUAGA AUAAGGGG@LB@3'-AUU...ACAGU A A C CA AACCGUUU G GA UAAAG...CAA-5'@LB@ | |@LB@ 112 38@LB@@LB@@LB@Energy -15.39 kcal/mol@LB@Hybridization Energy -43.1846 kcal/mol@LB@Unfolding Energy - mRNA 11.0009 kcal/mol@LB@Unfolding Energy - sRNA 20.821 kcal/mol@LB@@LB@Position - mRNA 23 -- 103@LB@Position - sRNA 39 -- 111@LB@Position Seed - mRNA 97 -- 103@LB@Position Seed - sRNA 39 -- 45@LB@ |
33 |
0.0009705 |
0.114 |
bsu20780 |
yopS |
-12.53 |
0.106187 |
15 -- 36 |
34 -- 54 |
XRE family transcriptional regulator |
|
_____________14_______________37\n_____________|________________|\n5'-GUU...ACCUG________C_______UAUGU...AAC-3'\n______________CCAUC_CU_AUUCUCC\n______________|||||_||_||||:||\n______________GGUAG_GA_UAAGGGG\n3'-AUU...GCAUG_____A__A_______UAAAG...CAA-5'\n_____________|________________|\n_____________55_______________33\n |
23 -- 29 |
39 -- 45 |
-17.4753 kcal/mol |
0.463886 kcal/mol |
7.9005 kcal/mol |
14 37@LB@ | |@LB@5'-GUU...ACCUG C UAUGU...AAC-3'@LB@ CCAUC CU AUUCUCC@LB@ ||||| || ||||:||@LB@ GGUAG GA UAAGGGG@LB@3'-AUU...GCAUG A A UAAAG...CAA-5'@LB@ | |@LB@ 55 33@LB@@LB@@LB@Energy -12.53 kcal/mol@LB@Hybridization Energy -17.4753 kcal/mol@LB@Unfolding Energy - mRNA 0.463886 kcal/mol@LB@Unfolding Energy - sRNA 7.9005 kcal/mol@LB@@LB@Position - mRNA 15 -- 36@LB@Position - sRNA 34 -- 54@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 39 -- 45@LB@ |
34 |
0.001006 |
0.1147 |
bsu37620 |
rsfA |
-13.01 |
0.085239 |
64 -- 106 |
124 -- 165 |
prespore-specific transcriptional regulator RsfA |
|
_____________63_________________________________________________107\n_____________|__________________________________________________|\n5'-UUC...ACAUC__A_______UU__A_____UC_____________U_____CCGC_____CCUUC...ACG-3'\n______________AC_CUUCAUU__AC_AGGAU___GAC__UGUUC_C_GCAAG____UCCAU\n______________||_||||||:__||_||||:___|||__|||:|_|_|||||____|||||\n______________UG_GAAGUAG__UG_UCCUG___CUG__ACAGG_G_CGUUC____AGGUA\n3'-AUU...AAAAA__A_______U_________UAA___UA_____C_U_____A________UAUUA...CAA-5'\n_____________|__________________________________________________|\n_____________166________________________________________________123\n |
64 -- 70 |
159 -- 165 |
-31.4528 kcal/mol |
7.34844 kcal/mol |
10.3728 kcal/mol |
63 107@LB@ | |@LB@5'-UUC...ACAUC A UU A UC U CCGC CCUUC...ACG-3'@LB@ AC CUUCAUU AC AGGAU GAC UGUUC C GCAAG UCCAU@LB@ || ||||||: || ||||: ||| |||:| | ||||| |||||@LB@ UG GAAGUAG UG UCCUG CUG ACAGG G CGUUC AGGUA@LB@3'-AUU...AAAAA A U UAA UA C U A UAUUA...CAA-5'@LB@ | |@LB@ 166 123@LB@@LB@@LB@Energy -13.01 kcal/mol@LB@Hybridization Energy -31.4528 kcal/mol@LB@Unfolding Energy - mRNA 7.34844 kcal/mol@LB@Unfolding Energy - sRNA 10.3728 kcal/mol@LB@@LB@Position - mRNA 64 -- 106@LB@Position - sRNA 124 -- 165@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 159 -- 165@LB@ |
35 |
0.001083 |
0.1199 |
bsu38140 |
qoxD |
-14.68 |
0.038800 |
80 -- 211 |
61 -- 193 |
quinol oxidase subunit 4 |
|
_____________79_________________212\n_____________|__________________|\n5'-UUU...GGGUC_____AA___________AUCUG...CAG-3'\n______________UGUAA___UGGCAAACAA\n______________||:||___||||||||||\n______________ACGUU___ACCGUUUGUU\n3'-AUU...AAGCA_____AGA__________AGCAU...CAA-5'\n_____________|__________________|\n_____________194________________60\n |
204 -- 210 |
62 -- 68 |
-16.9019 kcal/mol |
4.29892 kcal/mol |
4.69882 kcal/mol |
79 212@LB@ | |@LB@5'-UUU...GGGUC AA AUCUG...CAG-3'@LB@ UGUAA UGGCAAACAA@LB@ ||:|| ||||||||||@LB@ ACGUU ACCGUUUGUU@LB@3'-AUU...AAGCA AGA AGCAU...CAA-5'@LB@ | |@LB@ 194 60@LB@@LB@@LB@Energy -14.68 kcal/mol@LB@Hybridization Energy -16.9019 kcal/mol@LB@Unfolding Energy - mRNA 4.29892 kcal/mol@LB@Unfolding Energy - sRNA 4.69882 kcal/mol@LB@@LB@Position - mRNA 80 -- 211@LB@Position - sRNA 61 -- 193@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 62 -- 68@LB@ |
36 |
0.001118 |
0.1204 |
bsu17650 |
yncE |
-8.56 |
0.524973 |
291 -- 300 |
61 -- 70 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type h: extrachromosomal origin' |
|
_____________290_______300\n_____________|_________|\n5'-GUA...AUAGG__________-3'\n______________UGGCAAACGA\n______________||||||||:|\n______________ACCGUUUGUU\n3'-AUU...UUAGA__________AGCAU...CAA-5'\n_____________|__________|\n_____________71_________60\n |
294 -- 300 |
61 -- 67 |
-13.5985 kcal/mol |
0.387687 kcal/mol |
4.67716 kcal/mol |
290 300@LB@ | |@LB@5'-GUA...AUAGG -3'@LB@ UGGCAAACGA@LB@ ||||||||:|@LB@ ACCGUUUGUU@LB@3'-AUU...UUAGA AGCAU...CAA-5'@LB@ | |@LB@ 71 60@LB@@LB@@LB@Energy -8.56 kcal/mol@LB@Hybridization Energy -13.5985 kcal/mol@LB@Unfolding Energy - mRNA 0.387687 kcal/mol@LB@Unfolding Energy - sRNA 4.67716 kcal/mol@LB@@LB@Position - mRNA 291 -- 300@LB@Position - sRNA 61 -- 70@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 61 -- 67@LB@ |
37 |
0.00122 |
0.1206 |
bsu31150 |
yubB |
-14.80 |
0.036692 |
271 -- 292 |
145 -- 165 |
undecaprenyl-diphosphatase |
|
_____________270____________________293\n_____________|______________________|\n5'-UAU...GCCGG____U____________A____CAUAGUAG-3'\n______________UUUC_UCGACAGGACAU_UGAU\n______________:|||_||:|||||||||_|||:\n______________GAAG_AGUUGUCCUGUA_ACUG\n3'-AUU...AAUGA____U_________________UAACA...CAA-5'\n_____________|______________________|\n_____________166____________________144\n |
281 -- 287 |
149 -- 155 |
-24.6442 kcal/mol |
4.4819 kcal/mol |
7.11846 kcal/mol |
270 293@LB@ | |@LB@5'-UAU...GCCGG U A CAUAGUAG-3'@LB@ UUUC UCGACAGGACAU UGAU@LB@ :||| ||:||||||||| |||:@LB@ GAAG AGUUGUCCUGUA ACUG@LB@3'-AUU...AAUGA U UAACA...CAA-5'@LB@ | |@LB@ 166 144@LB@@LB@@LB@Energy -14.80 kcal/mol@LB@Hybridization Energy -24.6442 kcal/mol@LB@Unfolding Energy - mRNA 4.4819 kcal/mol@LB@Unfolding Energy - sRNA 7.11846 kcal/mol@LB@@LB@Position - mRNA 271 -- 292@LB@Position - sRNA 145 -- 165@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 149 -- 155@LB@ |
38 |
0.001252 |
0.1206 |
bsu19610 |
yodI |
-17.13 |
0.011794 |
8 -- 27 |
49 -- 68 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________7____________________28\n_____________|____________________|\n____5'-AUUUAUC___________AU_______AUUAC...UAA-3'\n______________GCAAACGAUUG__CCCAUCU\n______________||||||:||:|__|||||||\n______________CGUUUGUUAGC__GGGUAGA\n3'-AUU...AGAAC___________AU_______GAAUA...CAA-5'\n_____________|____________________|\n_____________69___________________48\n |
21 -- 27 |
49 -- 55 |
-26.3851 kcal/mol |
1.36402 kcal/mol |
8.38306 kcal/mol |
7 28@LB@ | |@LB@ 5'-AUUUAUC AU AUUAC...UAA-3'@LB@ GCAAACGAUUG CCCAUCU@LB@ ||||||:||:| |||||||@LB@ CGUUUGUUAGC GGGUAGA@LB@3'-AUU...AGAAC AU GAAUA...CAA-5'@LB@ | |@LB@ 69 48@LB@@LB@@LB@Energy -17.13 kcal/mol@LB@Hybridization Energy -26.3851 kcal/mol@LB@Unfolding Energy - mRNA 1.36402 kcal/mol@LB@Unfolding Energy - sRNA 8.38306 kcal/mol@LB@@LB@Position - mRNA 8 -- 27@LB@Position - sRNA 49 -- 68@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 49 -- 55@LB@ |
39 |
0.001272 |
0.1206 |
bsu38090 |
vpr |
-13.65 |
0.063330 |
246 -- 286 |
133 -- 174 |
minor extracellular protease vpr |
|
_____________245__________________________________________287\n_____________|____________________________________________|\n5'-AUU...CUUAU_______G_______C__________ACG______CAG______UCCGG...CAA-3'\n______________UUUUUGC___UUAUC_ACAGG_CAUU___GGCGUU____GCAGC\n______________|||||:|___|:|||_|||||_||||___|:|:||____|||||\n______________AAAAAUG___AGUAG_UGUCC_GUAA___CUGUAA____CGUCG\n3'-AUU...CGAAA_______AGA_____U_____U_____________CAGG_____UUCAA...CAA-5'\n_____________|____________________________________________|\n_____________175__________________________________________132\n |
247 -- 253 |
167 -- 173 |
-30.59 kcal/mol |
9.01512 kcal/mol |
10.7895 kcal/mol |
245 287@LB@ | |@LB@5'-AUU...CUUAU G C ACG CAG UCCGG...CAA-3'@LB@ UUUUUGC UUAUC ACAGG CAUU GGCGUU GCAGC@LB@ |||||:| |:||| ||||| |||| |:|:|| |||||@LB@ AAAAAUG AGUAG UGUCC GUAA CUGUAA CGUCG@LB@3'-AUU...CGAAA AGA U U CAGG UUCAA...CAA-5'@LB@ | |@LB@ 175 132@LB@@LB@@LB@Energy -13.65 kcal/mol@LB@Hybridization Energy -30.59 kcal/mol@LB@Unfolding Energy - mRNA 9.01512 kcal/mol@LB@Unfolding Energy - sRNA 10.7895 kcal/mol@LB@@LB@Position - mRNA 246 -- 286@LB@Position - sRNA 133 -- 174@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 167 -- 173@LB@ |
40 |
0.001293 |
0.1206 |
bsu13810 |
ykvS |
-11.02 |
0.206841 |
41 -- 57 |
31 -- 45 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________40________________58\n_____________|_________________|\n5'-UGU...CAAAA_______CCU_______CUAUU...CGA-3'\n______________AUUCCCC___UUUCUUU\n______________|||||||___|||||||\n______________UAAGGGG___AAAGAAA\n3'-AUU...GAGAA_______U_________CUUUA...CAA-5'\n_____________|_________________|\n_____________46________________30\n |
51 -- 57 |
31 -- 37 |
-15.5048 kcal/mol |
1.25691 kcal/mol |
5.1304 kcal/mol |
40 58@LB@ | |@LB@5'-UGU...CAAAA CCU CUAUU...CGA-3'@LB@ AUUCCCC UUUCUUU@LB@ ||||||| |||||||@LB@ UAAGGGG AAAGAAA@LB@3'-AUU...GAGAA U CUUUA...CAA-5'@LB@ | |@LB@ 46 30@LB@@LB@@LB@Energy -11.02 kcal/mol@LB@Hybridization Energy -15.5048 kcal/mol@LB@Unfolding Energy - mRNA 1.25691 kcal/mol@LB@Unfolding Energy - sRNA 5.1304 kcal/mol@LB@@LB@Position - mRNA 41 -- 57@LB@Position - sRNA 31 -- 45@LB@Position Seed - mRNA 51 -- 57@LB@Position Seed - sRNA 31 -- 37@LB@ |
41 |
0.00131 |
0.1206 |
bsu01580 |
ybaR |
-15.69 |
0.023818 |
44 -- 97 |
34 -- 84 |
sulfate transporter YbaR |
|
_____________43________________________________________________________________98\n_____________|_________________________________________________________________|\n5'-CAG...UUAUU____UACU______A__A___CUC____CCU___U_____A_______A_GU_____________UCUCC...CGA-3'\n______________AUGA____CUUUGU_UG_CAA___CUUG___CAA_ACAAU__UACUCA_C_____UUCCCCGUUU\n______________||||____|||:||_||_|||___||||___|||_|||||__|||:||_|_____||||||:|||\n______________UACU____GAAGCA_AC_GUU___GAAC___GUU_UGUUA__AUGGGU_G_____AAGGGGUAAA\n3'-AUU...UUCAU____UACC_____________A______C___________GC______A_AGAAU__________GAAAC...CAA-5'\n_____________|_________________________________________________________________|\n_____________85________________________________________________________________33\n |
90 -- 96 |
35 -- 41 |
-34.7178 kcal/mol |
7.59764 kcal/mol |
14.4179 kcal/mol |
43 98@LB@ | |@LB@5'-CAG...UUAUU UACU A A CUC CCU U A A GU UCUCC...CGA-3'@LB@ AUGA CUUUGU UG CAA CUUG CAA ACAAU UACUCA C UUCCCCGUUU@LB@ |||| |||:|| || ||| |||| ||| ||||| |||:|| | ||||||:|||@LB@ UACU GAAGCA AC GUU GAAC GUU UGUUA AUGGGU G AAGGGGUAAA@LB@3'-AUU...UUCAU UACC A C GC A AGAAU GAAAC...CAA-5'@LB@ | |@LB@ 85 33@LB@@LB@@LB@Energy -15.69 kcal/mol@LB@Hybridization Energy -34.7178 kcal/mol@LB@Unfolding Energy - mRNA 7.59764 kcal/mol@LB@Unfolding Energy - sRNA 14.4179 kcal/mol@LB@@LB@Position - mRNA 44 -- 97@LB@Position - sRNA 34 -- 84@LB@Position Seed - mRNA 90 -- 96@LB@Position Seed - sRNA 35 -- 41@LB@ |
42 |
0.001312 |
0.1206 |
bsu39060 |
citH |
-14.25 |
0.047679 |
3 -- 65 |
120 -- 184 |
citrate transporter |
bsu26860 bsu07610 |
_____________2___________________________________________________________66\n_____________|___________________________________________________________|\n5'-GUC...UCCCC_______AAACGAAACAU__U____C_____U_______________UUC_________ACUGC...UUG-3'\n______________CUUUUUA___________UC_ACAG_ACAUU_AC_____CCGUGGCG___UUCAUAUAA\n______________||:||:|___________||_||||_|||||_||_____|||::||:___|:|||||||\n______________GAGAAGU___________AG_UGUC_UGUAA_UG_____GGCGUCGU___AGGUAUAUU\n3'-AUU...AAAAU____________________U____C_____C__UAACA________UCA_________ACAAC...CAA-5'\n_____________|___________________________________________________________|\n_____________185_________________________________________________________119\n |
59 -- 65 |
120 -- 126 |
-29.4475 kcal/mol |
5.73383 kcal/mol |
10.5645 kcal/mol |
2 66@LB@ | |@LB@5'-GUC...UCCCC AAACGAAACAU U C U UUC ACUGC...UUG-3'@LB@ CUUUUUA UC ACAG ACAUU AC CCGUGGCG UUCAUAUAA@LB@ ||:||:| || |||| ||||| || |||::||: |:|||||||@LB@ GAGAAGU AG UGUC UGUAA UG GGCGUCGU AGGUAUAUU@LB@3'-AUU...AAAAU U C C UAACA UCA ACAAC...CAA-5'@LB@ | |@LB@ 185 119@LB@@LB@@LB@Energy -14.25 kcal/mol@LB@Hybridization Energy -29.4475 kcal/mol@LB@Unfolding Energy - mRNA 5.73383 kcal/mol@LB@Unfolding Energy - sRNA 10.5645 kcal/mol@LB@@LB@Position - mRNA 3 -- 65@LB@Position - sRNA 120 -- 184@LB@Position Seed - mRNA 59 -- 65@LB@Position Seed - sRNA 120 -- 126@LB@ |
43 |
0.00135 |
0.1206 |
bsu10230 |
yhfH |
-10.18 |
0.291514 |
18 -- 110 |
27 -- 139 |
Evidence 6: Doubtful CDS |
|
_____________17_____________________________________________________________________________________________________________________111\n_____________|______________________________________________________________________________________________________________________|\n5'-CAU...GAAAA____CAU________________C_____A______A________________UCCUC_______________UU____AA_____GU___CC___AAUAUA_________C______AAAGC...AUG-3'\n______________CCGC___AGCA___UCCG_AUAA___UGU_ACUUUC____________UAAUG_____CU________AUCUU__CAAA__AAUUG__CCU__UUC______CCCAUUUUU_UUGAAA\n______________||||___||||___|||:_||||___|||_||||||____________|||||_____||________|||||__||||__|||:|__||:__:||______|||||||:|_||||||\n______________GGCG___UCGU___AGGU_UAUU___ACA_UGAAAG____________AUUAC_____GA________UAGAA__GUUU__UUAGC__GGG__GAG______GGGUAAAGA_AACUUU\n3'-AUU...UAACA___________UCA____A____ACA___G______AGUAGAAGUUUC_____UUACC__AGCAACGU_____CC____G______AU___UA___AAUAAG________________AAACU...CAA-5'\n_____________|______________________________________________________________________________________________________________________|\n_____________140____________________________________________________________________________________________________________________26\n |
96 -- 102 |
34 -- 40 |
-47.8615 kcal/mol |
11.539 kcal/mol |
28.2686 kcal/mol |
17 111@LB@ | |@LB@5'-CAU...GAAAA CAU C A A UCCUC UU AA GU CC AAUAUA C AAAGC...AUG-3'@LB@ CCGC AGCA UCCG AUAA UGU ACUUUC UAAUG CU AUCUU CAAA AAUUG CCU UUC CCCAUUUUU UUGAAA@LB@ |||| |||| |||: |||| ||| |||||| ||||| || ||||| |||| |||:| ||: :|| |||||||:| ||||||@LB@ GGCG UCGU AGGU UAUU ACA UGAAAG AUUAC GA UAGAA GUUU UUAGC GGG GAG GGGUAAAGA AACUUU@LB@3'-AUU...UAACA UCA A ACA G AGUAGAAGUUUC UUACC AGCAACGU CC G AU UA AAUAAG AAACU...CAA-5'@LB@ | |@LB@ 140 26@LB@@LB@@LB@Energy -10.18 kcal/mol@LB@Hybridization Energy -47.8615 kcal/mol@LB@Unfolding Energy - mRNA 11.539 kcal/mol@LB@Unfolding Energy - sRNA 28.2686 kcal/mol@LB@@LB@Position - mRNA 18 -- 110@LB@Position - sRNA 27 -- 139@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 34 -- 40@LB@ |
44 |
0.001404 |
0.1206 |
bsu30660 |
ytkA |
-11.27 |
0.185588 |
215 -- 238 |
164 -- 186 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type lp: lipoprotein' |
|
_____________214_________239\n_____________|___________|\n5'-CAU...GCGCU___________GCGUU...UUU-3'\n______________AAACGUUUAAU\n______________|||||:|||||\n______________UUUGCGAAUUA\n3'-AUU...AAACU___________AAGAA...CAA-5'\n_____________|___________|\n_____________187_________163\n |
23 -- 29 |
11 -- 17 |
-8.86173 kcal/mol |
2.03186 kcal/mol |
2.83264 kcal/mol |
214 239@LB@ | |@LB@5'-CAU...GCGCU GCGUU...UUU-3'@LB@ AAACGUUUAAU@LB@ |||||:|||||@LB@ UUUGCGAAUUA@LB@3'-AUU...AAACU AAGAA...CAA-5'@LB@ | |@LB@ 187 163@LB@@LB@@LB@Energy -11.27 kcal/mol@LB@Hybridization Energy -8.86173 kcal/mol@LB@Unfolding Energy - mRNA 2.03186 kcal/mol@LB@Unfolding Energy - sRNA 2.83264 kcal/mol@LB@@LB@Position - mRNA 215 -- 238@LB@Position - sRNA 164 -- 186@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 11 -- 17@LB@ |
45 |
0.001428 |
0.1206 |
bsu27290 |
yrzA |
-10.49 |
0.257926 |
1 -- 17 |
111 -- 136 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________0_________________18\n_____________|_________________|\n_______5'-CGGC_________________ACUCC...ACA-3'\n______________CCAUAU____UUGUCAC\n______________||||||____|||||||\n______________GGUAUA____AACAGUG\n3'-AUU...UUCAA______UUAC_______AAAGA...CAA-5'\n_____________|_________________|\n_____________137_______________110\n |
11 -- 17 |
111 -- 117 |
-14.7924 kcal/mol |
0.950105 kcal/mol |
3.76381 kcal/mol |
0 18@LB@ | |@LB@ 5'-CGGC ACUCC...ACA-3'@LB@ CCAUAU UUGUCAC@LB@ |||||| |||||||@LB@ GGUAUA AACAGUG@LB@3'-AUU...UUCAA UUAC AAAGA...CAA-5'@LB@ | |@LB@ 137 110@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -14.7924 kcal/mol@LB@Unfolding Energy - mRNA 0.950105 kcal/mol@LB@Unfolding Energy - sRNA 3.76381 kcal/mol@LB@@LB@Position - mRNA 1 -- 17@LB@Position - sRNA 111 -- 136@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 111 -- 117@LB@ |
46 |
0.001434 |
0.1206 |
bsu07700 |
nagP |
-14.91 |
0.034715 |
11 -- 49 |
31 -- 62 |
PTS system-N-acetylglucosamine-specific transporter subunit EIICB |
|
_____________10______________________________________50\n_____________|_______________________________________|\n5'-UCU...UUCUU______UUGUUACAA______G_C______GC_______UUAAA...UAU-3'\n______________GAUCGU_________UCAUCU_U_AUUCCC__UUUCUUU\n______________:|||||_________:|||||_|_||||||__|||||||\n______________UUAGCA_________GGUAGA_A_UAAGGG__AAAGAAA\n3'-AUU...GUUUG______UG_____________G_A______GU_______CUUUA...CAA-5'\n_____________|_______________________________________|\n_____________63______________________________________30\n |
43 -- 49 |
31 -- 37 |
-26.4462 kcal/mol |
2.72756 kcal/mol |
10.7322 kcal/mol |
10 50@LB@ | |@LB@5'-UCU...UUCUU UUGUUACAA G C GC UUAAA...UAU-3'@LB@ GAUCGU UCAUCU U AUUCCC UUUCUUU@LB@ :||||| :||||| | |||||| |||||||@LB@ UUAGCA GGUAGA A UAAGGG AAAGAAA@LB@3'-AUU...GUUUG UG G A GU CUUUA...CAA-5'@LB@ | |@LB@ 63 30@LB@@LB@@LB@Energy -14.91 kcal/mol@LB@Hybridization Energy -26.4462 kcal/mol@LB@Unfolding Energy - mRNA 2.72756 kcal/mol@LB@Unfolding Energy - sRNA 10.7322 kcal/mol@LB@@LB@Position - mRNA 11 -- 49@LB@Position - sRNA 31 -- 62@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 31 -- 37@LB@ |
47 |
0.001488 |
0.1206 |
bsu18480 |
proH |
-12.75 |
0.095888 |
85 -- 112 |
155 -- 184 |
pyrroline-5-carboxylate reductase 1 |
bsu23800 |
_____________84_______________113\n_____________|________________|\n5'-AGC...UUUUC____________U___UAUUU...CAG-3'\n______________UGCUUUUCAUUA_ACA\n______________|:||:|||||:|_|||\n______________AUGAGAAGUAGU_UGU\n3'-AUU...AAAAA________________CCUGU...CAA-5'\n_____________|________________|\n_____________185______________154\n |
102 -- 108 |
158 -- 164 |
-13.4777 kcal/mol |
3.19807 kcal/mol |
1.41616 kcal/mol |
84 113@LB@ | |@LB@5'-AGC...UUUUC U UAUUU...CAG-3'@LB@ UGCUUUUCAUUA ACA@LB@ |:||:|||||:| |||@LB@ AUGAGAAGUAGU UGU@LB@3'-AUU...AAAAA CCUGU...CAA-5'@LB@ | |@LB@ 185 154@LB@@LB@@LB@Energy -12.75 kcal/mol@LB@Hybridization Energy -13.4777 kcal/mol@LB@Unfolding Energy - mRNA 3.19807 kcal/mol@LB@Unfolding Energy - sRNA 1.41616 kcal/mol@LB@@LB@Position - mRNA 85 -- 112@LB@Position - sRNA 155 -- 184@LB@Position Seed - mRNA 102 -- 108@LB@Position Seed - sRNA 158 -- 164@LB@ |
48 |
0.001494 |
0.1206 |
bsu33660 |
rghRA |
-13.24 |
0.076349 |
28 -- 146 |
39 -- 166 |
HTH-type transcriptional repressor RghR |
bsu33670 |
_____________27_________________________________________________147\n_____________|__________________________________________________|\n5'-UAU...AUUAC_____A____AAC______U___U___U_______A____A_C_______UUUAG...UCU-3'\n______________GGCUU_UGUU____UUUUG_CAA_ACA_UU___CC_GUCU_C_UAUUCCC\n______________|||||_:|||____|:|||_|||_|||_|:___||_:|||_|_|||||||\n______________CCGAA_GCAA____AGAAC_GUU_UGU_AG___GG_UAGA_G_AUAAGGG\n3'-AUU...ACUUA__________CGUU_____C_______U__CAU__G______A_______GUAAA...CAA-5'\n_____________|__________________________________________________|\n_____________167________________________________________________38\n |
139 -- 145 |
40 -- 46 |
-27.8785 kcal/mol |
6.21563 kcal/mol |
10.9223 kcal/mol |
27 147@LB@ | |@LB@5'-UAU...AUUAC A AAC U U U A A C UUUAG...UCU-3'@LB@ GGCUU UGUU UUUUG CAA ACA UU CC GUCU C UAUUCCC@LB@ ||||| :||| |:||| ||| ||| |: || :||| | |||||||@LB@ CCGAA GCAA AGAAC GUU UGU AG GG UAGA G AUAAGGG@LB@3'-AUU...ACUUA CGUU C U CAU G A GUAAA...CAA-5'@LB@ | |@LB@ 167 38@LB@@LB@@LB@Energy -13.24 kcal/mol@LB@Hybridization Energy -27.8785 kcal/mol@LB@Unfolding Energy - mRNA 6.21563 kcal/mol@LB@Unfolding Energy - sRNA 10.9223 kcal/mol@LB@@LB@Position - mRNA 28 -- 146@LB@Position - sRNA 39 -- 166@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 40 -- 46@LB@ |
49 |
0.001587 |
0.1212 |
bsu40240 |
yycS |
-16.07 |
0.019817 |
5 -- 79 |
35 -- 113 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type h: extrachromosomal origin' |
|
_____________4_________________________________________________________________________________80\n_____________|_________________________________________________________________________________|\n_______5'-AAUA_____G______G______UCCUCC____U_______C__U_____________A___U___U____AA___AA_______AUUCA...GCA-3'\n______________CGCUU_UUUCAU_UUCAAA______GAUG_UUUC_UU_CA_UUUU_____ACAA_UGU_CUC_UCUC__UAU__CCUAUUU\n______________|:|||_|:||||_||||||______:|||_:|||_||_||_|:||_____||||_:||_|:|_||||__|||__||:||||\n______________GUGAA_AGAGUA_AAGUUU______UUAC_GAAG_AA_GU_AGAA_____UGUU_GCA_GGG_AGAG__AUA__GGGUAAA\n3'-AUU...CAACA____________G______CAUUAC____C____C__C__U____CCGUU____A___U___U____A____AG_______GAAAC...CAA-5'\n_____________|_________________________________________________________________________________|\n_____________114_______________________________________________________________________________34\n |
73 -- 79 |
35 -- 41 |
-40.7208 kcal/mol |
6.49365 kcal/mol |
21.9183 kcal/mol |
4 80@LB@ | |@LB@ 5'-AAUA G G UCCUCC U C U A U U AA AA AUUCA...GCA-3'@LB@ CGCUU UUUCAU UUCAAA GAUG UUUC UU CA UUUU ACAA UGU CUC UCUC UAU CCUAUUU@LB@ |:||| |:|||| |||||| :||| :||| || || |:|| |||| :|| |:| |||| ||| ||:||||@LB@ GUGAA AGAGUA AAGUUU UUAC GAAG AA GU AGAA UGUU GCA GGG AGAG AUA GGGUAAA@LB@3'-AUU...CAACA G CAUUAC C C C U CCGUU A U U A AG GAAAC...CAA-5'@LB@ | |@LB@ 114 34@LB@@LB@@LB@Energy -16.07 kcal/mol@LB@Hybridization Energy -40.7208 kcal/mol@LB@Unfolding Energy - mRNA 6.49365 kcal/mol@LB@Unfolding Energy - sRNA 21.9183 kcal/mol@LB@@LB@Position - mRNA 5 -- 79@LB@Position - sRNA 35 -- 113@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 35 -- 41@LB@ |
50 |
0.001627 |
0.1212 |
bsu38130 |
ywcE |
-9.91 |
0.324646 |
1 -- 15 |
39 -- 56 |
spore morphogenesis and germination protein YwcE |
|
_____________0_______________________________________________________________16\n_____________|_______________________________________________________________|\n5'-GCC...AAAAA_____ACA______________A__A___A______U____________UU____U_______AUCAC...CAA-3'\n______________CAAUC_____AAACAG____AC_CA_CUC__GUUCC_CUAUUUC____A__UUUG_AAACGUU\n______________|||||_____|||||:____||_||_|||__:||||_|:|||||____|__||||_|||||:|\n______________GUUAG_____UUUGUU____UG_GU_GAG__UAAGG_GGUAAAG____U__AAAC_UUUGCGA\n3'-AUU...GCAAC_____AACCG______AGCA__G__A___AA_____________AAAC_UU____U_______AUUAA...CAA-5'\n_____________|_______________________________________________________________|\n_____________57______________________________________________________________38\n |
170 -- 176 |
15 -- 21 |
-29.8413 kcal/mol |
5.55001 kcal/mol |
15.9749 kcal/mol |
0 16@LB@ | |@LB@5'-GCC...AAAAA ACA A A A U UU U AUCAC...CAA-3'@LB@ CAAUC AAACAG AC CA CUC GUUCC CUAUUUC A UUUG AAACGUU@LB@ ||||| |||||: || || ||| :|||| |:||||| | |||| |||||:|@LB@ GUUAG UUUGUU UG GU GAG UAAGG GGUAAAG U AAAC UUUGCGA@LB@3'-AUU...GCAAC AACCG AGCA G A AA AAAC UU U AUUAA...CAA-5'@LB@ | |@LB@ 57 38@LB@@LB@@LB@Energy -9.91 kcal/mol@LB@Hybridization Energy -29.8413 kcal/mol@LB@Unfolding Energy - mRNA 5.55001 kcal/mol@LB@Unfolding Energy - sRNA 15.9749 kcal/mol@LB@@LB@Position - mRNA 1 -- 15@LB@Position - sRNA 39 -- 56@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 15 -- 21@LB@ |
51 |
0.001644 |
0.1212 |
bsu29870 |
ytzB |
-11.72 |
0.152375 |
23 -- 59 |
33 -- 85 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________22__________________________________________60\n_____________|___________________________________________|\n5'-CUG...AUUGC___________________________________________AAAAG...AAG-3'\n______________UUAACAGGAU_UUGGC__UGUU__________UCUGUAUAAUG\n______________|:|||||||:_|||:|__|||:__________||::|||||||\n______________AGUUGUCCUG_AACUG__ACAG__________AGGUAUAUUAC\n3'-AUU...GAAGU__________U_____UA____GCGUCGUUCA___________AACAG...CAA-5'\n_____________|___________________________________________|\n_____________86__________________________________________32\n |
163 -- 169 |
118 -- 124 |
-27.3559 kcal/mol |
7.06665 kcal/mol |
10.6143 kcal/mol |
22 60@LB@ | |@LB@5'-CUG...AUUGC AAAAG...AAG-3'@LB@ UUAACAGGAU UUGGC UGUU UCUGUAUAAUG@LB@ |:|||||||: |||:| |||: ||::|||||||@LB@ AGUUGUCCUG AACUG ACAG AGGUAUAUUAC@LB@3'-AUU...GAAGU U UA GCGUCGUUCA AACAG...CAA-5'@LB@ | |@LB@ 86 32@LB@@LB@@LB@Energy -11.72 kcal/mol@LB@Hybridization Energy -27.3559 kcal/mol@LB@Unfolding Energy - mRNA 7.06665 kcal/mol@LB@Unfolding Energy - sRNA 10.6143 kcal/mol@LB@@LB@Position - mRNA 23 -- 59@LB@Position - sRNA 33 -- 85@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 118 -- 124@LB@ |
52 |
0.001732 |
0.1212 |
bsu29530 |
sppA |
-10.15 |
0.295539 |
2 -- 29 |
39 -- 81 |
signal peptide peptidase SppA |
|
_____________1________________________________________________________30\n_____________|________________________________________________________|\n5'-GCG...CUCUG_G______C____UGUCUAUU_____CAG__________GA_______________GCGUC...AAG-3'\n______________G_GAUUUU_GGCG________AUCGU___CAUCUC_UAU_____GUUUCUUUGAAA\n______________|_:||:||_|||:________|||||___||||||_|||_____:|||||||||||\n______________C_UUAGAA_CCGU________UAGCA___GUAGAG_AUA_____UAAAGAAACUUU\n3'-AUU...AGCAA_G___________UUGU_________UGG______A___AGGGG____________AAACU...CAA-5'\n_____________|________________________________________________________|\n_____________82_______________________________________________________38\n |
284 -- 290 |
28 -- 34 |
-34.8894 kcal/mol |
12.7856 kcal/mol |
14.4529 kcal/mol |
1 30@LB@ | |@LB@5'-GCG...CUCUG G C UGUCUAUU CAG GA GCGUC...AAG-3'@LB@ G GAUUUU GGCG AUCGU CAUCUC UAU GUUUCUUUGAAA@LB@ | :||:|| |||: ||||| |||||| ||| :|||||||||||@LB@ C UUAGAA CCGU UAGCA GUAGAG AUA UAAAGAAACUUU@LB@3'-AUU...AGCAA G UUGU UGG A AGGGG AAACU...CAA-5'@LB@ | |@LB@ 82 38@LB@@LB@@LB@Energy -10.15 kcal/mol@LB@Hybridization Energy -34.8894 kcal/mol@LB@Unfolding Energy - mRNA 12.7856 kcal/mol@LB@Unfolding Energy - sRNA 14.4529 kcal/mol@LB@@LB@Position - mRNA 2 -- 29@LB@Position - sRNA 39 -- 81@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 28 -- 34@LB@ |
53 |
0.001762 |
0.1212 |
bsu10040 |
ecsA |
-7.56 |
0.695140 |
42 -- 51 |
33 -- 42 |
ABC transporter ATP-binding protein |
|
_____________41_________52\n_____________|__________|\n5'-UAU...AAACA__________CAGUU...GCU-3'\n______________CCUCAUUUUU\n______________||:|||||:|\n______________GGGGUAAAGA\n3'-AUU...AAUAA__________AACUU...CAA-5'\n_____________|__________|\n_____________43_________32\n |
45 -- 51 |
33 -- 39 |
-10.6739 kcal/mol |
0.405129 kcal/mol |
4.65815 kcal/mol |
41 52@LB@ | |@LB@5'-UAU...AAACA CAGUU...GCU-3'@LB@ CCUCAUUUUU@LB@ ||:|||||:|@LB@ GGGGUAAAGA@LB@3'-AUU...AAUAA AACUU...CAA-5'@LB@ | |@LB@ 43 32@LB@@LB@@LB@Energy -7.56 kcal/mol@LB@Hybridization Energy -10.6739 kcal/mol@LB@Unfolding Energy - mRNA 0.405129 kcal/mol@LB@Unfolding Energy - sRNA 4.65815 kcal/mol@LB@@LB@Position - mRNA 42 -- 51@LB@Position - sRNA 33 -- 42@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 33 -- 39@LB@ |
54 |
0.001793 |
0.1212 |
bsu21030 |
yonP |
-11.11 |
0.198660 |
20 -- 36 |
161 -- 178 |
Evidence 5: No homology to any previously reported sequences |
|
_____________19_______37\n_____________|________|\n5'-AAU...UUUAA________AUAUU...ACA-3'\n______________ACUCUUUA\n______________||||||:|\n______________UGAGAAGU\n3'-AUU...AAAAA________AGUUG...CAA-5'\n_____________|________|\n_____________179______160\n |
30 -- 36 |
161 -- 167 |
-8.6372 kcal/mol |
0.252156 kcal/mol |
0.576912 kcal/mol |
19 37@LB@ | |@LB@5'-AAU...UUUAA AUAUU...ACA-3'@LB@ ACUCUUUA@LB@ ||||||:|@LB@ UGAGAAGU@LB@3'-AUU...AAAAA AGUUG...CAA-5'@LB@ | |@LB@ 179 160@LB@@LB@@LB@Energy -11.11 kcal/mol@LB@Hybridization Energy -8.6372 kcal/mol@LB@Unfolding Energy - mRNA 0.252156 kcal/mol@LB@Unfolding Energy - sRNA 0.576912 kcal/mol@LB@@LB@Position - mRNA 20 -- 36@LB@Position - sRNA 161 -- 178@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 161 -- 167@LB@ |
55 |
0.001813 |
0.1212 |
bsu30290 |
amyC |
-12.90 |
0.089506 |
91 -- 153 |
102 -- 159 |
ABC transporter permease |
|
_____________90_________________________________________________________________154\n_____________|__________________________________________________________________|\n5'-CUG...UCAAA_________GCC___UA________AC_____G_______UU___GCAU__________GA_____AGCUU...CUU-3'\n______________CGGCAGGAU___GGC__UG_CCGCA__GCAAG___CAUAU__AUG____UUGUCAUUUU__UCAUC\n______________|::|||||:___|:|__||_|||||__|||||___|||||__|||____||||||:|||__|||||\n______________GUUGUCCUG___CUG__AC_GGCGU__CGUUC___GUAUA__UAC____AACAGUGAAA__AGUAG\n3'-AUU...AAGUA_________UAA___UA__A____________AAG_____U__________________G______AAGUU...CAA-5'\n_____________|__________________________________________________________________|\n_____________160________________________________________________________________101\n |
139 -- 145 |
109 -- 115 |
-48.9264 kcal/mol |
23.4207 kcal/mol |
14.7573 kcal/mol |
90 154@LB@ | |@LB@5'-CUG...UCAAA GCC UA AC G UU GCAU GA AGCUU...CUU-3'@LB@ CGGCAGGAU GGC UG CCGCA GCAAG CAUAU AUG UUGUCAUUUU UCAUC@LB@ |::|||||: |:| || ||||| ||||| ||||| ||| ||||||:||| |||||@LB@ GUUGUCCUG CUG AC GGCGU CGUUC GUAUA UAC AACAGUGAAA AGUAG@LB@3'-AUU...AAGUA UAA UA A AAG U G AAGUU...CAA-5'@LB@ | |@LB@ 160 101@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -48.9264 kcal/mol@LB@Unfolding Energy - mRNA 23.4207 kcal/mol@LB@Unfolding Energy - sRNA 14.7573 kcal/mol@LB@@LB@Position - mRNA 91 -- 153@LB@Position - sRNA 102 -- 159@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 109 -- 115@LB@ |
56 |
0.00183 |
0.1212 |
bsu11770 |
cotW |
-16.10 |
0.019548 |
48 -- 170 |
31 -- 163 |
spore coat protein W |
|
_____________47_______________________________________171\n_____________|________________________________________|\n5'-UCU...UAAAA__________CC__________CAAAAUUACUU_______CGACG...GGG-3'\n______________UUAUCAACAG__GCA___ACAU___________UGUCUGC\n______________|:||||||||__:||___||||___________||||:||\n______________AGUAGUUGUC__UGU___UGUA___________ACAGGCG\n3'-AUU...UGAGA__________C____AAC______________________UCGUU...CAA-5'\n_____________|________________________________________|\n_____________164______________________________________30\n |
78 -- 84 |
136 -- 142 |
-21.9263 kcal/mol |
4.68907 kcal/mol |
7.4131 kcal/mol |
47 171@LB@ | |@LB@5'-UCU...UAAAA CC CAAAAUUACUU CGACG...GGG-3'@LB@ UUAUCAACAG GCA ACAU UGUCUGC@LB@ |:|||||||| :|| |||| ||||:||@LB@ AGUAGUUGUC UGU UGUA ACAGGCG@LB@3'-AUU...UGAGA C AAC UCGUU...CAA-5'@LB@ | |@LB@ 164 30@LB@@LB@@LB@Energy -16.10 kcal/mol@LB@Hybridization Energy -21.9263 kcal/mol@LB@Unfolding Energy - mRNA 4.68907 kcal/mol@LB@Unfolding Energy - sRNA 7.4131 kcal/mol@LB@@LB@Position - mRNA 48 -- 170@LB@Position - sRNA 31 -- 163@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 136 -- 142@LB@ |
57 |
0.001839 |
0.1212 |
bsu14940 |
ylbA |
-10.08 |
0.303417 |
14 -- 67 |
35 -- 81 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________13___________________________________________68\n_____________|____________________________________________|\n5'-CAU...AAUAC_________AUU______U___C___C___AG____________UGUCA...AAU-3'\n______________CG_UGCAAU____GCAAG_CGG_UGU_AUC__AUCUUUUAUUUU\n______________||_||||||____||||:_|::_:||_|:|__||||:|||||::\n______________GC_ACGUUA____CGUUU_GUU_GCA_UGG__UAGAGAAUAAGG\n3'-AUU...CCGAA__A______GAAC_________A_______G_____________GGUAA...CAA-5'\n_____________|____________________________________________|\n_____________82___________________________________________34\n |
49 -- 55 |
41 -- 47 |
-26.0695 kcal/mol |
9.01529 kcal/mol |
9.64997 kcal/mol |
13 68@LB@ | |@LB@5'-CAU...AAUAC AUU U C C AG UGUCA...AAU-3'@LB@ CG UGCAAU GCAAG CGG UGU AUC AUCUUUUAUUUU@LB@ || |||||| ||||: |:: :|| |:| ||||:|||||::@LB@ GC ACGUUA CGUUU GUU GCA UGG UAGAGAAUAAGG@LB@3'-AUU...CCGAA A GAAC A G GGUAA...CAA-5'@LB@ | |@LB@ 82 34@LB@@LB@@LB@Energy -10.08 kcal/mol@LB@Hybridization Energy -26.0695 kcal/mol@LB@Unfolding Energy - mRNA 9.01529 kcal/mol@LB@Unfolding Energy - sRNA 9.64997 kcal/mol@LB@@LB@Position - mRNA 14 -- 67@LB@Position - sRNA 35 -- 81@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 41 -- 47@LB@ |
58 |
0.001848 |
0.1212 |
bsu21840 |
ypjP |
-10.31 |
0.277541 |
15 -- 73 |
14 -- 70 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________14___________________________________________________________74\n_____________|____________________________________________________________|\n5'-UAA...AACUG__________AG___CAA____GCGGAAAG____C____A_______A___U________UUACA...CCG-3'\n______________UGGCAAACAG__CGU___UCAU________CCUC_UUUC__UGAAAU_UUG_AAGCGUUU\n______________|||||||||:__|||___:|||________||:|_||||__||||||_|||_||:||:||\n______________ACCGUUUGUU__GCA___GGUA________GGGG_AAAG__ACUUUA_AAC_UUUGCGAA\n3'-AUU...UUAGA__________A____UG_____GAGAAUAA____U____AA__________U________UUAAA...CAA-5'\n_____________|____________________________________________________________|\n_____________71___________________________________________________________13\n |
67 -- 73 |
14 -- 20 |
-38.3558 kcal/mol |
13.3253 kcal/mol |
15.5628 kcal/mol |
14 74@LB@ | |@LB@5'-UAA...AACUG AG CAA GCGGAAAG C A A U UUACA...CCG-3'@LB@ UGGCAAACAG CGU UCAU CCUC UUUC UGAAAU UUG AAGCGUUU@LB@ |||||||||: ||| :||| ||:| |||| |||||| ||| ||:||:||@LB@ ACCGUUUGUU GCA GGUA GGGG AAAG ACUUUA AAC UUUGCGAA@LB@3'-AUU...UUAGA A UG GAGAAUAA U AA U UUAAA...CAA-5'@LB@ | |@LB@ 71 13@LB@@LB@@LB@Energy -10.31 kcal/mol@LB@Hybridization Energy -38.3558 kcal/mol@LB@Unfolding Energy - mRNA 13.3253 kcal/mol@LB@Unfolding Energy - sRNA 15.5628 kcal/mol@LB@@LB@Position - mRNA 15 -- 73@LB@Position - sRNA 14 -- 70@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 14 -- 20@LB@ |
59 |
0.001868 |
0.1212 |
bsu12260 |
yjlA |
-14.41 |
0.044077 |
46 -- 133 |
103 -- 182 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pt: transporter' |
|
_____________45__________________________________________________________________134\n_____________|___________________________________________________________________|\n5'-CGG...UGUCU_____UC_______UUCACCUCCCUUUU______UCCACAUAUA_____UCG_____AAC_______UUUUC...GGA-3'\n______________CUCUU__CAUCAAU______________UUGUCU__________GCGGU_____CCA___AUGAUGU\n______________|||||__||||||:______________|||||:__________||:|:_____|||___||:||||\n______________GAGAA__GUAGUUG______________AACAGG__________CGUCG_____GGU___UAUUACA\n3'-AUU...AAAAU______________UCCUGUAACUGU_______________________UUCAA___A_________ACAGU...CAA-5'\n_____________|___________________________________________________________________|\n_____________183_________________________________________________________________102\n |
118 -- 124 |
117 -- 123 |
-27.4081 kcal/mol |
7.08838 kcal/mol |
10.6441 kcal/mol |
45 134@LB@ | |@LB@5'-CGG...UGUCU UC UUCACCUCCCUUUU UCCACAUAUA UCG AAC UUUUC...GGA-3'@LB@ CUCUU CAUCAAU UUGUCU GCGGU CCA AUGAUGU@LB@ ||||| ||||||: |||||: ||:|: ||| ||:||||@LB@ GAGAA GUAGUUG AACAGG CGUCG GGU UAUUACA@LB@3'-AUU...AAAAU UCCUGUAACUGU UUCAA A ACAGU...CAA-5'@LB@ | |@LB@ 183 102@LB@@LB@@LB@Energy -14.41 kcal/mol@LB@Hybridization Energy -27.4081 kcal/mol@LB@Unfolding Energy - mRNA 7.08838 kcal/mol@LB@Unfolding Energy - sRNA 10.6441 kcal/mol@LB@@LB@Position - mRNA 46 -- 133@LB@Position - sRNA 103 -- 182@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 117 -- 123@LB@ |
60 |
0.001877 |
0.1212 |
bsu12040 |
yjdG |
-19.63 |
0.003403 |
61 -- 106 |
39 -- 81 |
N-acetyltransferase YjdG |
|
_____________60_______________________________________________107\n_____________|________________________________________________|\n5'-ACC...CUACC____UUU_____G_______UC___________AC____UCAA_____CUCAA...UAG-3'\n______________CGUU___GGUCU_GGCAAAC__UC__ACCUGUC__UCUU____UCCCC\n______________||||___::|||_|||||||__||__|||::||__||||____|||||\n______________GCAA___UUAGA_CCGUUUG__AG__UGGGUAG__AGAA____AGGGG\n3'-AUU...CCGAA____CG______A_______UU__CA_____________UA_______UAAAG...CAA-5'\n_____________|________________________________________________|\n_____________82_______________________________________________38\n |
85 -- 91 |
50 -- 56 |
-36.328 kcal/mol |
6.99682 kcal/mol |
13.0865 kcal/mol |
60 107@LB@ | |@LB@5'-ACC...CUACC UUU G UC AC UCAA CUCAA...UAG-3'@LB@ CGUU GGUCU GGCAAAC UC ACCUGUC UCUU UCCCC@LB@ |||| ::||| ||||||| || |||::|| |||| |||||@LB@ GCAA UUAGA CCGUUUG AG UGGGUAG AGAA AGGGG@LB@3'-AUU...CCGAA CG A UU CA UA UAAAG...CAA-5'@LB@ | |@LB@ 82 38@LB@@LB@@LB@Energy -19.63 kcal/mol@LB@Hybridization Energy -36.328 kcal/mol@LB@Unfolding Energy - mRNA 6.99682 kcal/mol@LB@Unfolding Energy - sRNA 13.0865 kcal/mol@LB@@LB@Position - mRNA 61 -- 106@LB@Position - sRNA 39 -- 81@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 50 -- 56@LB@ |
61 |
0.001915 |
0.1214 |
bsu19720 |
yodR |
-8.11 |
0.600668 |
13 -- 29 |
71 -- 89 |
coenzyme A transferase subunit beta |
|
_____________12___________30\n_____________|____________|\n5'-GCU...GAAGA____A_______ACCGG...CCU-3'\n______________AAUG_UUGUCAC\n______________||||_|||||||\n______________UUAC_AACAGUG\n3'-AUU...GUAUA____________AAAGA...CAA-5'\n_____________|____________|\n_____________90___________70\n |
143 -- 149 |
111 -- 117 |
-12.213 kcal/mol |
1.50216 kcal/mol |
3.63424 kcal/mol |
12 30@LB@ | |@LB@5'-GCU...GAAGA A ACCGG...CCU-3'@LB@ AAUG UUGUCAC@LB@ |||| |||||||@LB@ UUAC AACAGUG@LB@3'-AUU...GUAUA AAAGA...CAA-5'@LB@ | |@LB@ 90 70@LB@@LB@@LB@Energy -8.11 kcal/mol@LB@Hybridization Energy -12.213 kcal/mol@LB@Unfolding Energy - mRNA 1.50216 kcal/mol@LB@Unfolding Energy - sRNA 3.63424 kcal/mol@LB@@LB@Position - mRNA 13 -- 29@LB@Position - sRNA 71 -- 89@LB@Position Seed - mRNA 143 -- 149@LB@Position Seed - sRNA 111 -- 117@LB@ |
62 |
0.001958 |
0.1214 |
bsu25150 |
yqfQ |
-10.78 |
0.228520 |
210 -- 221 |
125 -- 139 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________209_____________222\n_____________|_______________|\n5'-AAU...UUUCA_______________AUGAG...UGC-3'\n______________CCGCAGCAG___CCA\n______________||||||||:___|||\n______________GGCGUCGUU___GGU\n3'-AUU...UAACA_________CAA___AUAUU...CAA-5'\n_____________|_______________|\n_____________140_____________124\n |
212 -- 218 |
131 -- 137 |
-17.5181 kcal/mol |
2.74724 kcal/mol |
6.06036 kcal/mol |
209 222@LB@ | |@LB@5'-AAU...UUUCA AUGAG...UGC-3'@LB@ CCGCAGCAG CCA@LB@ ||||||||: |||@LB@ GGCGUCGUU GGU@LB@3'-AUU...UAACA CAA AUAUU...CAA-5'@LB@ | |@LB@ 140 124@LB@@LB@@LB@Energy -10.78 kcal/mol@LB@Hybridization Energy -17.5181 kcal/mol@LB@Unfolding Energy - mRNA 2.74724 kcal/mol@LB@Unfolding Energy - sRNA 6.06036 kcal/mol@LB@@LB@Position - mRNA 210 -- 221@LB@Position - sRNA 125 -- 139@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 131 -- 137@LB@ |
63 |
0.001974 |
0.1214 |
bsu34640 |
yvdD |
-9.92 |
0.323853 |
41 -- 65 |
33 -- 60 |
LOG family protein YvdD |
|
_____________40___________________________66\n_____________|____________________________|\n5'-GAC...GUAAA______UCAUCCAUUUUUCUG_______CAGCU...GAA-3'\n______________ACUCUU_______________CAUCAGC\n______________||||||_______________|||||:|\n______________UGAGAA_______________GUAGUUG\n3'-AUU...AAAAA____________________________UCCUG...CAA-5'\n_____________|____________________________|\n_____________61___________________________32\n |
69 -- 75 |
156 -- 162 |
-11.7297 kcal/mol |
2.56294 kcal/mol |
1.40592 kcal/mol |
40 66@LB@ | |@LB@5'-GAC...GUAAA UCAUCCAUUUUUCUG CAGCU...GAA-3'@LB@ ACUCUU CAUCAGC@LB@ |||||| |||||:|@LB@ UGAGAA GUAGUUG@LB@3'-AUU...AAAAA UCCUG...CAA-5'@LB@ | |@LB@ 61 32@LB@@LB@@LB@Energy -9.92 kcal/mol@LB@Hybridization Energy -11.7297 kcal/mol@LB@Unfolding Energy - mRNA 2.56294 kcal/mol@LB@Unfolding Energy - sRNA 1.40592 kcal/mol@LB@@LB@Position - mRNA 41 -- 65@LB@Position - sRNA 33 -- 60@LB@Position Seed - mRNA 69 -- 75@LB@Position Seed - sRNA 156 -- 162@LB@ |
64 |
0.002007 |
0.1215 |
bsu37680 |
ywfH |
-19.51 |
0.003623 |
4 -- 58 |
32 -- 83 |
bacilysin biosynthesis oxidoreductase YwfH |
|
_____________3___________________________________________________________59\n_____________|___________________________________________________________|\n_________5'-AA___G______U____U__C_____________U__G____AUACAC_______A_____AUAUG...AUU-3'\n______________UUU_GUU_CA_UCUU_GU_GGCAAUC__ACCU_UC_CUUG______UUCCUCA_UUCUU\n______________:||_|||_||_||||_|:_::|||||__|||:_||_|||:______||||:||_|||||\n______________GAA_CAA_GU_AGAA_CG_UUGUUAG__UGGG_AG_GAAU______AAGGGGU_AAGAA\n3'-AUU...UUACC___G___C__U____C__U_______CA____U__A_________________A_____ACUUU...CAA-5'\n_____________|___________________________________________________________|\n_____________84__________________________________________________________31\n |
46 -- 52 |
38 -- 44 |
-36.3278 kcal/mol |
5.00359 kcal/mol |
14.596 kcal/mol |
3 59@LB@ | |@LB@ 5'-AA G U U C U G AUACAC A AUAUG...AUU-3'@LB@ UUU GUU CA UCUU GU GGCAAUC ACCU UC CUUG UUCCUCA UUCUU@LB@ :|| ||| || |||| |: ::||||| |||: || |||: ||||:|| |||||@LB@ GAA CAA GU AGAA CG UUGUUAG UGGG AG GAAU AAGGGGU AAGAA@LB@3'-AUU...UUACC G C U C U CA U A A ACUUU...CAA-5'@LB@ | |@LB@ 84 31@LB@@LB@@LB@Energy -19.51 kcal/mol@LB@Hybridization Energy -36.3278 kcal/mol@LB@Unfolding Energy - mRNA 5.00359 kcal/mol@LB@Unfolding Energy - sRNA 14.596 kcal/mol@LB@@LB@Position - mRNA 4 -- 58@LB@Position - sRNA 32 -- 83@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 38 -- 44@LB@ |
65 |
0.002089 |
0.123 |
bsu15330 |
sigG |
-7.32 |
0.735765 |
1 -- 8 |
133 -- 140 |
RNA polymerase sigma-G factor |
|
______________1_______9\n______________|_______|\n___________5'-________UUGAG...AUG-3'\n______________UUCGCGGC\n______________|:|||:||\n______________AGGCGUCG\n3'-AUU...GUAAC________UUCAA...CAA-5'\n_____________|________|\n_____________141______132\n |
2 -- 8 |
133 -- 139 |
-12.0754 kcal/mol |
1.63369 kcal/mol |
4.3229 kcal/mol |
1 9@LB@ | |@LB@ 5'- UUGAG...AUG-3'@LB@ UUCGCGGC@LB@ |:|||:||@LB@ AGGCGUCG@LB@3'-AUU...GUAAC UUCAA...CAA-5'@LB@ | |@LB@ 141 132@LB@@LB@@LB@Energy -7.32 kcal/mol@LB@Hybridization Energy -12.0754 kcal/mol@LB@Unfolding Energy - mRNA 1.63369 kcal/mol@LB@Unfolding Energy - sRNA 4.3229 kcal/mol@LB@@LB@Position - mRNA 1 -- 8@LB@Position - sRNA 133 -- 140@LB@Position Seed - mRNA 2 -- 8@LB@Position Seed - sRNA 133 -- 139@LB@ |
66 |
0.002095 |
0.123 |
bsu28660 |
sspI |
-12.58 |
0.103691 |
257 -- 278 |
56 -- 77 |
small acid-soluble spore protein I |
|
_____________256_____________________279\n_____________|_______________________|\n5'-UUG...CAGGA_________A___U_________GAUGC...AAG-3'\n______________GCAG_CUUG_GCA_ACAAUCGUA\n______________|||:_||||_|||_|||||||||\n______________CGUU_GAAC_CGU_UGUUAGCAU\n3'-AUU...AGCAA____A________U_________GGGUA...CAA-5'\n_____________|_______________________|\n_____________78______________________55\n |
271 -- 277 |
57 -- 63 |
-25.139 kcal/mol |
6.36558 kcal/mol |
6.79705 kcal/mol |
256 279@LB@ | |@LB@5'-UUG...CAGGA A U GAUGC...AAG-3'@LB@ GCAG CUUG GCA ACAAUCGUA@LB@ |||: |||| ||| |||||||||@LB@ CGUU GAAC CGU UGUUAGCAU@LB@3'-AUU...AGCAA A U GGGUA...CAA-5'@LB@ | |@LB@ 78 55@LB@@LB@@LB@Energy -12.58 kcal/mol@LB@Hybridization Energy -25.139 kcal/mol@LB@Unfolding Energy - mRNA 6.36558 kcal/mol@LB@Unfolding Energy - sRNA 6.79705 kcal/mol@LB@@LB@Position - mRNA 257 -- 278@LB@Position - sRNA 56 -- 77@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 57 -- 63@LB@ |
67 |
0.002241 |
0.1242 |
bsu04040 |
ycsE |
-12.95 |
0.087665 |
83 -- 153 |
117 -- 184 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type pe: enzyme' |
|
_____________82________________________________________________________________________________154\n_____________|_________________________________________________________________________________|\n________5'-AUC____C____AAG________C__GG___UUU__U___G_________GC______________GUCAU______UC_____CACCG...GCA-3'\n______________GGAU_GGUU___UCGUUGUG_UC__GGU___CA_UUG__UUUGUUUU__UGUUUUU__UUUCU_____GUUUGA__AC_CU\n______________|:||_||:|___||||||::_||__||:___||_|:|__::::|:|:__|:||:::__|||||_____:|||||__||_||\n______________CUUA_CCGA___AGCAACGU_AG__CCG___GU_AGC__GGGUAGAG__AUAAGGG__AAAGA_____UAAACU__UG_GA\n3'-AUU...CAUUA____________________U__AA___UUU__U___AU________A________GU_____AACUU______UU__C__AUUAA...CAA-5'\n_____________|_________________________________________________________________________________|\n_____________185_______________________________________________________________________________116\n |
52 -- 58 |
40 -- 46 |
-38.9686 kcal/mol |
11.5965 kcal/mol |
18.2899 kcal/mol |
82 154@LB@ | |@LB@ 5'-AUC C AAG C GG UUU U G GC GUCAU UC CACCG...GCA-3'@LB@ GGAU GGUU UCGUUGUG UC GGU CA UUG UUUGUUUU UGUUUUU UUUCU GUUUGA AC CU@LB@ |:|| ||:| ||||||:: || ||: || |:| ::::|:|: |:||::: ||||| :||||| || ||@LB@ CUUA CCGA AGCAACGU AG CCG GU AGC GGGUAGAG AUAAGGG AAAGA UAAACU UG GA@LB@3'-AUU...CAUUA U AA UUU U AU A GU AACUU UU C AUUAA...CAA-5'@LB@ | |@LB@ 185 116@LB@@LB@@LB@Energy -12.95 kcal/mol@LB@Hybridization Energy -38.9686 kcal/mol@LB@Unfolding Energy - mRNA 11.5965 kcal/mol@LB@Unfolding Energy - sRNA 18.2899 kcal/mol@LB@@LB@Position - mRNA 83 -- 153@LB@Position - sRNA 117 -- 184@LB@Position Seed - mRNA 52 -- 58@LB@Position Seed - sRNA 40 -- 46@LB@ |
68 |
0.002291 |
0.1242 |
bsu02600 |
cwlJ |
-9.38 |
0.396883 |
135 -- 166 |
88 -- 116 |
cell wall hydrolase CwlJ |
|
_____________134______________________________167\n_____________|________________________________|\n5'-UGU...UCUCC____C__CCG_____AC___U___________AUAUG...UCG-3'\n______________UGUC_CU___UCAUC__UUC_GAAGUAAUGAA\n______________||||_||___|||||__|||_:||||||||||\n______________ACAG_GA___AGUAG__AAG_UUUCAUUACUU\n3'-AUU...UUACA____U__AAG______________________ACCGA...CAA-5'\n_____________|________________________________|\n_____________117______________________________87\n |
159 -- 165 |
89 -- 95 |
-22.7508 kcal/mol |
5.74597 kcal/mol |
10.169 kcal/mol |
134 167@LB@ | |@LB@5'-UGU...UCUCC C CCG AC U AUAUG...UCG-3'@LB@ UGUC CU UCAUC UUC GAAGUAAUGAA@LB@ |||| || ||||| ||| :||||||||||@LB@ ACAG GA AGUAG AAG UUUCAUUACUU@LB@3'-AUU...UUACA U AAG ACCGA...CAA-5'@LB@ | |@LB@ 117 87@LB@@LB@@LB@Energy -9.38 kcal/mol@LB@Hybridization Energy -22.7508 kcal/mol@LB@Unfolding Energy - mRNA 5.74597 kcal/mol@LB@Unfolding Energy - sRNA 10.169 kcal/mol@LB@@LB@Position - mRNA 135 -- 166@LB@Position - sRNA 88 -- 116@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 89 -- 95@LB@ |
69 |
0.002314 |
0.1242 |
bsu15650 |
yloB |
-14.32 |
0.046100 |
4 -- 34 |
102 -- 149 |
calcium-transporting ATPase |
|
_____________3________________________________________35\n_____________|________________________________________|\n5'-UUU...AAUUC________________________________________AAGUU...ACA-3'\n______________GUCCGC________CCA__________UUAUUUUCUCGUU\n______________||||||________|||__________|:|:||||||:|:\n______________CAGGCG________GGU__________AGUGAAAGAGUAG\n3'-AUU...UGUAA______UCGUUCAA___AUAUUACAAC_____________AAGUU...CAA-5'\n_____________|________________________________________|\n_____________150______________________________________101\n |
28 -- 34 |
102 -- 108 |
-22.6804 kcal/mol |
0.390781 kcal/mol |
10.7571 kcal/mol |
3 35@LB@ | |@LB@5'-UUU...AAUUC AAGUU...ACA-3'@LB@ GUCCGC CCA UUAUUUUCUCGUU@LB@ |||||| ||| |:|:||||||:|:@LB@ CAGGCG GGU AGUGAAAGAGUAG@LB@3'-AUU...UGUAA UCGUUCAA AUAUUACAAC AAGUU...CAA-5'@LB@ | |@LB@ 150 101@LB@@LB@@LB@Energy -14.32 kcal/mol@LB@Hybridization Energy -22.6804 kcal/mol@LB@Unfolding Energy - mRNA 0.390781 kcal/mol@LB@Unfolding Energy - sRNA 10.7571 kcal/mol@LB@@LB@Position - mRNA 4 -- 34@LB@Position - sRNA 102 -- 149@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 102 -- 108@LB@ |
70 |
0.00232 |
0.1242 |
bsu24010 |
bmr |
-11.41 |
0.174600 |
110 -- 147 |
39 -- 86 |
multidrug resistance protein |
bsu26590 |
_____________109_______148\n_____________|_________|\n5'-CAA...ACAUG_________GCAAA...UGA-3'\n______________CUUGUUCCC\n______________|||:|||||\n______________GAAUAAGGG\n3'-AUU...GUAGA_________GUAAA...CAA-5'\n_____________|_________|\n_____________87________38\n |
82 -- 88 |
40 -- 46 |
-12.1575 kcal/mol |
2.82835 kcal/mol |
0.440898 kcal/mol |
109 148@LB@ | |@LB@5'-CAA...ACAUG GCAAA...UGA-3'@LB@ CUUGUUCCC@LB@ |||:|||||@LB@ GAAUAAGGG@LB@3'-AUU...GUAGA GUAAA...CAA-5'@LB@ | |@LB@ 87 38@LB@@LB@@LB@Energy -11.41 kcal/mol@LB@Hybridization Energy -12.1575 kcal/mol@LB@Unfolding Energy - mRNA 2.82835 kcal/mol@LB@Unfolding Energy - sRNA 0.440898 kcal/mol@LB@@LB@Position - mRNA 110 -- 147@LB@Position - sRNA 39 -- 86@LB@Position Seed - mRNA 82 -- 88@LB@Position Seed - sRNA 40 -- 46@LB@ |
71 |
0.002326 |
0.1242 |
bsu37230 |
ywjA |
-17.78 |
0.008577 |
195 -- 260 |
99 -- 147 |
ABC transporter ATP-binding protein |
|
_____________194___________________________________________________________261\n_____________|_____________________________________________________________|\n5'-UGA...GGGAA____GG__G_________U__UUUUCAUAUUAUAAA________AAC______________GACUU...UUC-3'\n______________GAUA__GU_CUGCGGCAA_UU_______________CCAUAUAA___GUUGUU_CUUUCUC\n______________||:|__||_|:||:||||_||_______________||||||||___|||||:_|||||||\n______________CUGU__CA_GGCGUCGUU_AA_______________GGUAUAUU___CAACAG_GAAAGAG\n3'-AUU...UGUAA____AA____________C_________________________A________U_______UAGAA...CAA-5'\n_____________|_____________________________________________________________|\n_____________148___________________________________________________________98\n |
248 -- 254 |
105 -- 111 |
-39.3136 kcal/mol |
10.514 kcal/mol |
13.0974 kcal/mol |
194 261@LB@ | |@LB@5'-UGA...GGGAA GG G U UUUUCAUAUUAUAAA AAC GACUU...UUC-3'@LB@ GAUA GU CUGCGGCAA UU CCAUAUAA GUUGUU CUUUCUC@LB@ ||:| || |:||:|||| || |||||||| |||||: |||||||@LB@ CUGU CA GGCGUCGUU AA GGUAUAUU CAACAG GAAAGAG@LB@3'-AUU...UGUAA AA C A U UAGAA...CAA-5'@LB@ | |@LB@ 148 98@LB@@LB@@LB@Energy -17.78 kcal/mol@LB@Hybridization Energy -39.3136 kcal/mol@LB@Unfolding Energy - mRNA 10.514 kcal/mol@LB@Unfolding Energy - sRNA 13.0974 kcal/mol@LB@@LB@Position - mRNA 195 -- 260@LB@Position - sRNA 99 -- 147@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 105 -- 111@LB@ |
72 |
0.002326 |
0.1242 |
bsu10730 |
yisI |
-10.35 |
0.272902 |
44 -- 108 |
96 -- 182 |
aspartyl-phosphate phosphatase YisI |
|
_____________43___________________________________109\n_____________|____________________________________|\n5'-UAG...AAAGG_________AAA________________________GUCAA...UGG-3'\n______________CCGCAGCAA_____________UUGUCGCUUUUUUA\n______________|||||||||_____________|||||:||||:|:|\n______________GGCGUCGUU_____________AACAGUGAAAGAGU\n3'-AUU...UAACA_________CAAGGUAUAUUAC______________AGAAG...CAA-5'\n_____________|____________________________________|\n_____________183__________________________________95\n |
90 -- 96 |
110 -- 116 |
-28.3207 kcal/mol |
8.15126 kcal/mol |
10.3722 kcal/mol |
43 109@LB@ | |@LB@5'-UAG...AAAGG AAA GUCAA...UGG-3'@LB@ CCGCAGCAA UUGUCGCUUUUUUA@LB@ ||||||||| |||||:||||:|:|@LB@ GGCGUCGUU AACAGUGAAAGAGU@LB@3'-AUU...UAACA CAAGGUAUAUUAC AGAAG...CAA-5'@LB@ | |@LB@ 183 95@LB@@LB@@LB@Energy -10.35 kcal/mol@LB@Hybridization Energy -28.3207 kcal/mol@LB@Unfolding Energy - mRNA 8.15126 kcal/mol@LB@Unfolding Energy - sRNA 10.3722 kcal/mol@LB@@LB@Position - mRNA 44 -- 108@LB@Position - sRNA 96 -- 182@LB@Position Seed - mRNA 90 -- 96@LB@Position Seed - sRNA 110 -- 116@LB@ |
73 |
0.002371 |
0.1242 |
bsu00930 |
cysE |
-20.00 |
0.002833 |
192 -- 291 |
102 -- 187 |
serine acetyltransferase |
|
_____________191__________________________________________________________________________292\n_____________|____________________________________________________________________________|\n5'-CCU...AAUGC____AGAA__________C___GUUCGAUCAAGAUC__________AAG_____UU__AA__G_____AA______CCGGU...UAC-3'\n______________UCAA____GACAUUGAUA_UGU______________CCGCAGCAAG___C_UAU__UG__GU_AUUUU__CUUAUU\n______________||||____||||||||:|_|||______________||||||||||___|_|||__||__||_|:|||__||:||:\n______________AGUU____CUGUAACUGU_ACA______________GGCGUCGUUC___G_AUA__AC__CA_UGAAA__GAGUAG\n3'-AUU...GAAGU____GUC___________A___________________________AAG_U___UU__AA__G_____________AAGUU...CAA-5'\n_____________|____________________________________________________________________________|\n_____________188__________________________________________________________________________101\n |
256 -- 262 |
130 -- 136 |
-42.0244 kcal/mol |
15.3231 kcal/mol |
14.7636 kcal/mol |
191 292@LB@ | |@LB@5'-CCU...AAUGC AGAA C GUUCGAUCAAGAUC AAG UU AA G AA CCGGU...UAC-3'@LB@ UCAA GACAUUGAUA UGU CCGCAGCAAG C UAU UG GU AUUUU CUUAUU@LB@ |||| ||||||||:| ||| |||||||||| | ||| || || |:||| ||:||:@LB@ AGUU CUGUAACUGU ACA GGCGUCGUUC G AUA AC CA UGAAA GAGUAG@LB@3'-AUU...GAAGU GUC A AAG U UU AA G AAGUU...CAA-5'@LB@ | |@LB@ 188 101@LB@@LB@@LB@Energy -20.00 kcal/mol@LB@Hybridization Energy -42.0244 kcal/mol@LB@Unfolding Energy - mRNA 15.3231 kcal/mol@LB@Unfolding Energy - sRNA 14.7636 kcal/mol@LB@@LB@Position - mRNA 192 -- 291@LB@Position - sRNA 102 -- 187@LB@Position Seed - mRNA 256 -- 262@LB@Position Seed - sRNA 130 -- 136@LB@ |
74 |
0.002384 |
0.1242 |
bsu09450 |
yhdF |
-14.81 |
0.036487 |
208 -- 244 |
132 -- 159 |
oxidoreductase |
|
_____________207____________________________________245\n_____________|______________________________________|\n5'-UCC...GAACC__________GACAAACAGAAG____AGAA________UCAGG...AGG-3'\n______________CAAU_GGACA____________GACA____CCGCAGCA\n______________|||:_|||||____________||||____||||||||\n______________GUUG_CCUGU____________CUGU____GGCGUCGU\n3'-AUU...AAGUA____U_____AA______________AACA________UCAAG...CAA-5'\n_____________|______________________________________|\n_____________160____________________________________131\n |
238 -- 244 |
132 -- 138 |
-26.7883 kcal/mol |
3.14586 kcal/mol |
9.22644 kcal/mol |
207 245@LB@ | |@LB@5'-UCC...GAACC GACAAACAGAAG AGAA UCAGG...AGG-3'@LB@ CAAU GGACA GACA CCGCAGCA@LB@ |||: ||||| |||| ||||||||@LB@ GUUG CCUGU CUGU GGCGUCGU@LB@3'-AUU...AAGUA U AA AACA UCAAG...CAA-5'@LB@ | |@LB@ 160 131@LB@@LB@@LB@Energy -14.81 kcal/mol@LB@Hybridization Energy -26.7883 kcal/mol@LB@Unfolding Energy - mRNA 3.14586 kcal/mol@LB@Unfolding Energy - sRNA 9.22644 kcal/mol@LB@@LB@Position - mRNA 208 -- 244@LB@Position - sRNA 132 -- 159@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 132 -- 138@LB@ |
75 |
0.002405 |
0.1242 |
bsu01600 |
ybbA |
-13.26 |
0.075734 |
128 -- 177 |
34 -- 77 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 12354229 2974033; Product type pe: enzyme' |
|
_____________127______________________________________________178\n_____________|________________________________________________|\n5'-UCA...CGCAG___UC_________________________GGA_______________AUAUC...UUU-3'\n______________GCA__AUUUUGGCG_________AUCC_UC____GUUCCUUAUUUCUU\n______________|||__||:|||||:_________|:||_||____:||||::|||||||\n______________CGU__UAGAACCGU_________UGGG_AG____UAAGGGGUAAAGAA\n3'-AUU...AGCAA______________UUGUUAGCA____U__AGAA______________ACUUU...CAA-5'\n_____________|________________________________________________|\n_____________78_______________________________________________33\n |
158 -- 164 |
32 -- 38 |
-31.1473 kcal/mol |
6.80918 kcal/mol |
13.8943 kcal/mol |
127 178@LB@ | |@LB@5'-UCA...CGCAG UC GGA AUAUC...UUU-3'@LB@ GCA AUUUUGGCG AUCC UC GUUCCUUAUUUCUU@LB@ ||| ||:|||||: |:|| || :||||::|||||||@LB@ CGU UAGAACCGU UGGG AG UAAGGGGUAAAGAA@LB@3'-AUU...AGCAA UUGUUAGCA U AGAA ACUUU...CAA-5'@LB@ | |@LB@ 78 33@LB@@LB@@LB@Energy -13.26 kcal/mol@LB@Hybridization Energy -31.1473 kcal/mol@LB@Unfolding Energy - mRNA 6.80918 kcal/mol@LB@Unfolding Energy - sRNA 13.8943 kcal/mol@LB@@LB@Position - mRNA 128 -- 177@LB@Position - sRNA 34 -- 77@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 32 -- 38@LB@ |
76 |
0.002466 |
0.1257 |
bsu07870 |
yfkK |
-15.12 |
0.031390 |
12 -- 33 |
33 -- 55 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________11______________________34\n_____________|_______________________|\n5'-UGU...ACCUC__________UGC__________CUAAA...UCA-3'\n______________CCUA_UUCUU___CCCUAUUUCU\n______________||:|_:||||___|||:||||||\n______________GGGU_GAGAA___GGGGUAAAGA\n3'-AUU...AGCAU____A_____UAA__________AACUU...CAA-5'\n_____________|_______________________|\n_____________56______________________32\n |
27 -- 33 |
33 -- 39 |
-21.8682 kcal/mol |
0.689294 kcal/mol |
9.04338 kcal/mol |
11 34@LB@ | |@LB@5'-UGU...ACCUC UGC CUAAA...UCA-3'@LB@ CCUA UUCUU CCCUAUUUCU@LB@ ||:| :|||| |||:||||||@LB@ GGGU GAGAA GGGGUAAAGA@LB@3'-AUU...AGCAU A UAA AACUU...CAA-5'@LB@ | |@LB@ 56 32@LB@@LB@@LB@Energy -15.12 kcal/mol@LB@Hybridization Energy -21.8682 kcal/mol@LB@Unfolding Energy - mRNA 0.689294 kcal/mol@LB@Unfolding Energy - sRNA 9.04338 kcal/mol@LB@@LB@Position - mRNA 12 -- 33@LB@Position - sRNA 33 -- 55@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 33 -- 39@LB@ |
77 |
0.002638 |
0.1315 |
bsu36790 |
ywmA |
-11.30 |
0.183092 |
1 -- 48 |
33 -- 81 |
Evidence 5: No homology to any previously reported sequences |
|
_____________0_______________49\n_____________|_______________|\n5'-CGA...GUUCA_______________AUAUA...GAC-3'\n______________UACCC_UUUCUUAUU\n______________|||||_|:|||||||\n______________AUGGG_AGAGAAUAA\n3'-AUU...UUAGC_____U_________GGGGU...CAA-5'\n_____________|_______________|\n_____________82______________32\n |
65 -- 71 |
43 -- 49 |
-14.8917 kcal/mol |
3.00255 kcal/mol |
4.80466 kcal/mol |
0 49@LB@ | |@LB@5'-CGA...GUUCA AUAUA...GAC-3'@LB@ UACCC UUUCUUAUU@LB@ ||||| |:|||||||@LB@ AUGGG AGAGAAUAA@LB@3'-AUU...UUAGC U GGGGU...CAA-5'@LB@ | |@LB@ 82 32@LB@@LB@@LB@Energy -11.30 kcal/mol@LB@Hybridization Energy -14.8917 kcal/mol@LB@Unfolding Energy - mRNA 3.00255 kcal/mol@LB@Unfolding Energy - sRNA 4.80466 kcal/mol@LB@@LB@Position - mRNA 1 -- 48@LB@Position - sRNA 33 -- 81@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 43 -- 49@LB@ |
78 |
0.002646 |
0.1315 |
bsu37410 |
albE |
-16.69 |
0.014616 |
33 -- 81 |
32 -- 77 |
antilisterial bacteriocin subtilosin biosynthesis protein AlbE |
|
_____________32_________________________________________________82\n_____________|__________________________________________________|\n5'-CUU...AUGGA_______CU_____AU____GU_______G__UUGUC______UA_____AGCCA...AAA-3'\n______________GCGGUUU___CAAA__AUCG__CUUAUCU_UU_____UUCCCC__UUCUU\n______________||::|:|___||||__||||__|::||||_||_____||||||__|||||\n______________CGUUAGA___GUUU__UAGC__GGGUAGA_AA_____AAGGGG__AAGAA\n3'-AUU...AGCAA_______ACC____GU____AU_______G__U__________UA_____ACUUU...CAA-5'\n_____________|__________________________________________________|\n_____________78_________________________________________________31\n |
54 -- 60 |
49 -- 55 |
-34.8992 kcal/mol |
7.30498 kcal/mol |
13.8943 kcal/mol |
32 82@LB@ | |@LB@5'-CUU...AUGGA CU AU GU G UUGUC UA AGCCA...AAA-3'@LB@ GCGGUUU CAAA AUCG CUUAUCU UU UUCCCC UUCUU@LB@ ||::|:| |||| |||| |::|||| || |||||| |||||@LB@ CGUUAGA GUUU UAGC GGGUAGA AA AAGGGG AAGAA@LB@3'-AUU...AGCAA ACC GU AU G U UA ACUUU...CAA-5'@LB@ | |@LB@ 78 31@LB@@LB@@LB@Energy -16.69 kcal/mol@LB@Hybridization Energy -34.8992 kcal/mol@LB@Unfolding Energy - mRNA 7.30498 kcal/mol@LB@Unfolding Energy - sRNA 13.8943 kcal/mol@LB@@LB@Position - mRNA 33 -- 81@LB@Position - sRNA 32 -- 77@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 49 -- 55@LB@ |
79 |
0.002683 |
0.1316 |
bsu12250 |
yjkB |
-15.23 |
0.029777 |
154 -- 245 |
42 -- 131 |
ABC transporter ATP-binding protein |
|
_____________153__________________________________________________________246\n_____________|____________________________________________________________|\n5'-AUA...UGAAA___GA__A_______GGAA__________AAACACAAAACAUACC_G_______C_____AGAUC...AGG-3'\n______________GGU__UU_UUGUAAU____GCAAACGAUC________________A_CCAUCUC___UUC\n______________||:__|:_|||:|||____||||||:|||________________|_|||||||___|||\n______________CCG__AG_AACGUUA____CGUUUGUUAG________________U_GGUAGAG___AAG\n3'-AUU...ACUUA___A___C_______GAAC__________CA_______________G_______AAU___GGGUA...CAA-5'\n_____________|____________________________________________________________|\n_____________132__________________________________________________________41\n |
235 -- 241 |
48 -- 54 |
-30.736 kcal/mol |
10.3673 kcal/mol |
9.19615 kcal/mol |
153 246@LB@ | |@LB@5'-AUA...UGAAA GA A GGAA AAACACAAAACAUACC G C AGAUC...AGG-3'@LB@ GGU UU UUGUAAU GCAAACGAUC A CCAUCUC UUC@LB@ ||: |: |||:||| ||||||:||| | ||||||| |||@LB@ CCG AG AACGUUA CGUUUGUUAG U GGUAGAG AAG@LB@3'-AUU...ACUUA A C GAAC CA G AAU GGGUA...CAA-5'@LB@ | |@LB@ 132 41@LB@@LB@@LB@Energy -15.23 kcal/mol@LB@Hybridization Energy -30.736 kcal/mol@LB@Unfolding Energy - mRNA 10.3673 kcal/mol@LB@Unfolding Energy - sRNA 9.19615 kcal/mol@LB@@LB@Position - mRNA 154 -- 245@LB@Position - sRNA 42 -- 131@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 48 -- 54@LB@ |
80 |
0.002732 |
0.1323 |
bsu14790 |
ylaI |
-9.42 |
0.391167 |
138 -- 189 |
118 -- 178 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________137____________________________________________________190\n_____________|______________________________________________________|\n5'-AGA...CUUUA_______C___UUUU_____GCUUC____A_________UAAUA____U_____AAAGA...AUA-3'\n______________GCUUUUU_UUA____GGACA_______UG_UCCGUGGUA_____CAUG_UAGUG\n______________:||:||:_|:|____|||||_______||_||||::|:|_____|||:_||:||\n______________UGAGAAG_AGU____CCUGU_______AC_AGGCGUCGU_____GUAU_AUUAC\n3'-AUU...AAAAA_______U___UGU______AACUGUA____________UCAAG__________AACAG...CAA-5'\n_____________|______________________________________________________|\n_____________179____________________________________________________117\n |
167 -- 173 |
133 -- 139 |
-31.618 kcal/mol |
11.7219 kcal/mol |
10.6253 kcal/mol |
137 190@LB@ | |@LB@5'-AGA...CUUUA C UUUU GCUUC A UAAUA U AAAGA...AUA-3'@LB@ GCUUUUU UUA GGACA UG UCCGUGGUA CAUG UAGUG@LB@ :||:||: |:| ||||| || ||||::|:| |||: ||:||@LB@ UGAGAAG AGU CCUGU AC AGGCGUCGU GUAU AUUAC@LB@3'-AUU...AAAAA U UGU AACUGUA UCAAG AACAG...CAA-5'@LB@ | |@LB@ 179 117@LB@@LB@@LB@Energy -9.42 kcal/mol@LB@Hybridization Energy -31.618 kcal/mol@LB@Unfolding Energy - mRNA 11.7219 kcal/mol@LB@Unfolding Energy - sRNA 10.6253 kcal/mol@LB@@LB@Position - mRNA 138 -- 189@LB@Position - sRNA 118 -- 178@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 133 -- 139@LB@ |
81 |
0.002798 |
0.1325 |
bsu03250 |
ycgR |
-7.37 |
0.727097 |
84 -- 130 |
48 -- 86 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pt: transporter' |
|
_____________83_______________________________________________131\n_____________|________________________________________________|\n5'-GCG...UACUC__________G____CUAACCAAAGUG________CUUUC___UC___CGUCA...GAA-3'\n______________GGCUUU_UUG_AAUC____________AAACGAUC_____CCC__CUC\n______________|||||:_|||_||||____________||||:|||_____|||__|||\n______________CCGAAG_AAC_UUAG____________UUUGUUAG_____GGG__GAG\n3'-AUU...ACUUA______C___G____AACCG_______________CAU_____UA___AAUAA...CAA-5'\n_____________|________________________________________________|\n_____________87_______________________________________________47\n |
111 -- 117 |
59 -- 65 |
-26.5811 kcal/mol |
9.91993 kcal/mol |
9.18845 kcal/mol |
83 131@LB@ | |@LB@5'-GCG...UACUC G CUAACCAAAGUG CUUUC UC CGUCA...GAA-3'@LB@ GGCUUU UUG AAUC AAACGAUC CCC CUC@LB@ |||||: ||| |||| ||||:||| ||| |||@LB@ CCGAAG AAC UUAG UUUGUUAG GGG GAG@LB@3'-AUU...ACUUA C G AACCG CAU UA AAUAA...CAA-5'@LB@ | |@LB@ 87 47@LB@@LB@@LB@Energy -7.37 kcal/mol@LB@Hybridization Energy -26.5811 kcal/mol@LB@Unfolding Energy - mRNA 9.91993 kcal/mol@LB@Unfolding Energy - sRNA 9.18845 kcal/mol@LB@@LB@Position - mRNA 84 -- 130@LB@Position - sRNA 48 -- 86@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 59 -- 65@LB@ |
82 |
0.002803 |
0.1325 |
bsu34100 |
rsbQ |
-17.18 |
0.011511 |
5 -- 86 |
34 -- 116 |
sigma factor SigB regulation protein RsbQ |
|
_____________4__________________________________________________________________________________________87\n_____________|__________________________________________________________________________________________|\n_______5'-CAAA____________C__ACCCC_____________G__UAG______CUCCUCCU___UCUUC_____C____________CUA__U_____GUCCU...UGU-3'\n______________UGUCAUUUUUUU_UC_______________GGU_UC___GCAAUC________GCA_____CAAUU__AUCCAUCUUUU___UC_CCCAU\n______________|||||:|||:|:_||_______________||:_||___||||||________|||_____||||:__|:||||||:||___||_|||||\n______________ACAGUGAAAGAG_AG_______________CCG_AG___CGUUAG________CGU_____GUUAG__UGGGUAGAGAA___AG_GGGUA\n3'-AUU...UUACA____________U__AAGUUUCAUUACUUA___A__CAA______AAC________UU________CA___________UA_________AAGAA...CAA-5'\n_____________|__________________________________________________________________________________________|\n_____________117________________________________________________________________________________________33\n |
65 -- 71 |
47 -- 53 |
-43.7075 kcal/mol |
8.64393 kcal/mol |
22.4324 kcal/mol |
4 87@LB@ | |@LB@ 5'-CAAA C ACCCC G UAG CUCCUCCU UCUUC C CUA U GUCCU...UGU-3'@LB@ UGUCAUUUUUUU UC GGU UC GCAAUC GCA CAAUU AUCCAUCUUUU UC CCCAU@LB@ |||||:|||:|: || ||: || |||||| ||| ||||: |:||||||:|| || |||||@LB@ ACAGUGAAAGAG AG CCG AG CGUUAG CGU GUUAG UGGGUAGAGAA AG GGGUA@LB@3'-AUU...UUACA U AAGUUUCAUUACUUA A CAA AAC UU CA UA AAGAA...CAA-5'@LB@ | |@LB@ 117 33@LB@@LB@@LB@Energy -17.18 kcal/mol@LB@Hybridization Energy -43.7075 kcal/mol@LB@Unfolding Energy - mRNA 8.64393 kcal/mol@LB@Unfolding Energy - sRNA 22.4324 kcal/mol@LB@@LB@Position - mRNA 5 -- 86@LB@Position - sRNA 34 -- 116@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 47 -- 53@LB@ |
83 |
0.002931 |
0.1368 |
bsu18650 |
pelB |
-17.38 |
0.010445 |
17 -- 103 |
38 -- 142 |
pectin lyase |
|
_____________16________________________________________________________________________________________________________________104\n_____________|_________________________________________________________________________________________________________________|\n5'-AGG...UAAGC_________U_______G_____UCAA____________CUA_________________________A___U____UU__________________________AGUAA____ACAUU...CAA-3'\n______________UG_CUGCAG_CAA___C_GUGUA______UC_CUUUCUU___UUUCAA______________UUGUU_GUA_GUCU__UGGC__GCAAUC___UCUAUUUUUUA_____CCCA\n______________||_|:||||_|||___|_:|:||______||_||||||:___:|||||______________|:|||_|:|_:|||__||||__:|||||___:|:||:|:|||_____||||\n______________AC_GGCGUC_GUU___G_UAUAU______AG_GAAAGAG___GAAGUU______________AGCAA_CGU_UAGA__ACCG__UGUUAG___GGGUAGAGAAU_____GGGU\n3'-AUU...CUGUA__A__________CAA_G_____UACAAC__U_______UA_______UCAUUACUUACCGA____________________UU______CAU___________AAG______AAAGA...CAA-5'\n_____________|_________________________________________________________________________________________________________________|\n_____________143_______________________________________________________________________________________________________________37\n |
42 -- 48 |
105 -- 111 |
-52.303 kcal/mol |
11.0023 kcal/mol |
27.6117 kcal/mol |
16 104@LB@ | |@LB@5'-AGG...UAAGC U G UCAA CUA A U UU AGUAA ACAUU...CAA-3'@LB@ UG CUGCAG CAA C GUGUA UC CUUUCUU UUUCAA UUGUU GUA GUCU UGGC GCAAUC UCUAUUUUUUA CCCA@LB@ || |:|||| ||| | :|:|| || ||||||: :||||| |:||| |:| :||| |||| :||||| :|:||:|:||| ||||@LB@ AC GGCGUC GUU G UAUAU AG GAAAGAG GAAGUU AGCAA CGU UAGA ACCG UGUUAG GGGUAGAGAAU GGGU@LB@3'-AUU...CUGUA A CAA G UACAAC U UA UCAUUACUUACCGA UU CAU AAG AAAGA...CAA-5'@LB@ | |@LB@ 143 37@LB@@LB@@LB@Energy -17.38 kcal/mol@LB@Hybridization Energy -52.303 kcal/mol@LB@Unfolding Energy - mRNA 11.0023 kcal/mol@LB@Unfolding Energy - sRNA 27.6117 kcal/mol@LB@@LB@Position - mRNA 17 -- 103@LB@Position - sRNA 38 -- 142@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 105 -- 111@LB@ |
84 |
0.003073 |
0.1418 |
bsu31450 |
kinB |
-10.05 |
0.307083 |
220 -- 261 |
31 -- 74 |
sporulation kinase B |
|
_____________219___________________262\n_____________|_____________________|\n5'-AUG...CUUUA______________CU_____ACCAA...UGC-3'\n______________UUUUGUUUCCUAUU__UCUUU\n______________|:||:||:||:|||__|||||\n______________AGAAUAAGGGGUAA__AGAAA\n3'-AUU...GGUAG_____________________CUUUA...CAA-5'\n_____________|_____________________|\n_____________75____________________30\n |
248 -- 254 |
36 -- 42 |
-15.4229 kcal/mol |
1.85906 kcal/mol |
5.65941 kcal/mol |
219 262@LB@ | |@LB@5'-AUG...CUUUA CU ACCAA...UGC-3'@LB@ UUUUGUUUCCUAUU UCUUU@LB@ |:||:||:||:||| |||||@LB@ AGAAUAAGGGGUAA AGAAA@LB@3'-AUU...GGUAG CUUUA...CAA-5'@LB@ | |@LB@ 75 30@LB@@LB@@LB@Energy -10.05 kcal/mol@LB@Hybridization Energy -15.4229 kcal/mol@LB@Unfolding Energy - mRNA 1.85906 kcal/mol@LB@Unfolding Energy - sRNA 5.65941 kcal/mol@LB@@LB@Position - mRNA 220 -- 261@LB@Position - sRNA 31 -- 74@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 36 -- 42@LB@ |
85 |
0.003124 |
0.1423 |
bsu15550 |
pyrF |
-13.42 |
0.070218 |
194 -- 221 |
50 -- 78 |
orotidine 5'-phosphate decarboxylase |
|
_____________193___________________________222\n_____________|_____________________________|\n5'-CCC...GGAGC__G____A__AA________C________AUCGC...AGG-3'\n______________UG_AAUC_UG__AAACAA_C_UGCCCAUC\n______________||_||||_||__||||||_|_|:||||||\n______________AC_UUAG_AC__UUUGUU_G_AUGGGUAG\n3'-AUU...AAGCA__G____A__CG______A_C________AGAAU...CAA-5'\n_____________|_____________________________|\n_____________79____________________________49\n |
215 -- 221 |
50 -- 56 |
-24.8332 kcal/mol |
3.07511 kcal/mol |
8.45904 kcal/mol |
193 222@LB@ | |@LB@5'-CCC...GGAGC G A AA C AUCGC...AGG-3'@LB@ UG AAUC UG AAACAA C UGCCCAUC@LB@ || |||| || |||||| | |:||||||@LB@ AC UUAG AC UUUGUU G AUGGGUAG@LB@3'-AUU...AAGCA G A CG A C AGAAU...CAA-5'@LB@ | |@LB@ 79 49@LB@@LB@@LB@Energy -13.42 kcal/mol@LB@Hybridization Energy -24.8332 kcal/mol@LB@Unfolding Energy - mRNA 3.07511 kcal/mol@LB@Unfolding Energy - sRNA 8.45904 kcal/mol@LB@@LB@Position - mRNA 194 -- 221@LB@Position - sRNA 50 -- 78@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 50 -- 56@LB@ |
86 |
0.003162 |
0.1423 |
bsu32080 |
yuiB |
-17.14 |
0.011766 |
214 -- 271 |
6 -- 63 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________213____________________________________________________________272\n_____________|______________________________________________________________|\n5'-UAG...UCUGC________A_______AA_______G_U____GUC___UUU_______U_____________AUUAA...GGA-3'\n______________CAGUCGUA_UCAUCUC__UUGUUUU_U_UUUU___UUG___UUUGGAA_CG____GUUUCUU\n______________||:|||||_:||||||__||:||::_:_|||:___|||___||||:||_||____:||||||\n______________GUUAGCAU_GGUAGAG__AAUAAGG_G_AAAG___AAC___AAACUUU_GC____UAAAGAA\n3'-AUU...CGUUU________G________________G_U____A_____UUU_______U__GAAU_______AACAA-5'\n_____________|______________________________________________________________|\n_____________64_____________________________________________________________5\n |
265 -- 271 |
6 -- 12 |
-35.4392 kcal/mol |
4.76592 kcal/mol |
13.9327 kcal/mol |
213 272@LB@ | |@LB@5'-UAG...UCUGC A AA G U GUC UUU U AUUAA...GGA-3'@LB@ CAGUCGUA UCAUCUC UUGUUUU U UUUU UUG UUUGGAA CG GUUUCUU@LB@ ||:||||| :|||||| ||:||:: : |||: ||| ||||:|| || :||||||@LB@ GUUAGCAU GGUAGAG AAUAAGG G AAAG AAC AAACUUU GC UAAAGAA@LB@3'-AUU...CGUUU G G U A UUU U GAAU AACAA-5'@LB@ | |@LB@ 64 5@LB@@LB@@LB@Energy -17.14 kcal/mol@LB@Hybridization Energy -35.4392 kcal/mol@LB@Unfolding Energy - mRNA 4.76592 kcal/mol@LB@Unfolding Energy - sRNA 13.9327 kcal/mol@LB@@LB@Position - mRNA 214 -- 271@LB@Position - sRNA 6 -- 63@LB@Position Seed - mRNA 265 -- 271@LB@Position Seed - sRNA 6 -- 12@LB@ |
87 |
0.003215 |
0.1423 |
bsu04140 |
pbpC |
-8.12 |
0.599206 |
128 -- 139 |
96 -- 107 |
penicillin-binding protein 3 |
|
______________128_____140\n______________|_______|\n___________5'-________AAGGC...CAU-3'\n______________UCUUGUUC\n______________||||:|||\n______________AGAAUAAG\n3'-AUU...GGUAG________GGGUA...CAA-5'\n_____________|________|\n_____________108______95\n |
2 -- 8 |
42 -- 48 |
-8.08477 kcal/mol |
0.903572 kcal/mol |
0.0615861 kcal/mol |
128 140@LB@ | |@LB@ 5'- AAGGC...CAU-3'@LB@ UCUUGUUC@LB@ ||||:|||@LB@ AGAAUAAG@LB@3'-AUU...GGUAG GGGUA...CAA-5'@LB@ | |@LB@ 108 95@LB@@LB@@LB@Energy -8.12 kcal/mol@LB@Hybridization Energy -8.08477 kcal/mol@LB@Unfolding Energy - mRNA 0.903572 kcal/mol@LB@Unfolding Energy - sRNA 0.0615861 kcal/mol@LB@@LB@Position - mRNA 128 -- 139@LB@Position - sRNA 96 -- 107@LB@Position Seed - mRNA 2 -- 8@LB@Position Seed - sRNA 42 -- 48@LB@ |
88 |
0.003231 |
0.1423 |
bsu34620 |
mdxD |
-9.76 |
0.344052 |
128 -- 173 |
81 -- 130 |
glucan 1 4-alpha-maltohexaosidase |
|
_____________127____________174\n_____________|______________|\n5'-GUU...AUGCA__GA_______C__GCCAU...GUG-3'\n______________GC__UUCAUCA_CA\n______________:|__|||||||_||\n______________UG__AAGUAGU_GU\n3'-AUU...AAAAA__AG_______U__CCUGU...CAA-5'\n_____________|______________|\n_____________131____________80\n |
220 -- 226 |
158 -- 164 |
-10.4913 kcal/mol |
1.73429 kcal/mol |
1.41528 kcal/mol |
127 174@LB@ | |@LB@5'-GUU...AUGCA GA C GCCAU...GUG-3'@LB@ GC UUCAUCA CA@LB@ :| ||||||| ||@LB@ UG AAGUAGU GU@LB@3'-AUU...AAAAA AG U CCUGU...CAA-5'@LB@ | |@LB@ 131 80@LB@@LB@@LB@Energy -9.76 kcal/mol@LB@Hybridization Energy -10.4913 kcal/mol@LB@Unfolding Energy - mRNA 1.73429 kcal/mol@LB@Unfolding Energy - sRNA 1.41528 kcal/mol@LB@@LB@Position - mRNA 128 -- 173@LB@Position - sRNA 81 -- 130@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 158 -- 164@LB@ |
89 |
0.003315 |
0.1443 |
bsu30460 |
ytrA |
-11.86 |
0.143485 |
75 -- 137 |
74 -- 137 |
GntR family transcriptional regulator |
|
_____________74__________________________________________________________________138\n_____________|___________________________________________________________________|\n5'-UUU...UGAUU_______________AUCGC_____CU_______U_G___UU________UC_______AAUG____AAAAG...AUA-3'\n______________GCGGCA___UCUGUG_____UUGUU__UUUUUUC_U_UUC___GUGAUGA__GGUUUUG____GCAA\n______________||:|||___||::|:_____||||:__:|||:||_|_|||___||:||||__||:||:|____||||\n______________CGUCGU___AGGUAU_____AACAG__GAAAGAG_A_AAG___CAUUACU__CCGAAGC____CGUU\n3'-AUU...ACAGG______UCA______AUUAC_____U________U_G___UUU_______UA_______AA______AGAAC...CAA-5'\n_____________|___________________________________________________________________|\n_____________138_________________________________________________________________73\n |
123 -- 129 |
80 -- 86 |
-41.3024 kcal/mol |
16.5538 kcal/mol |
14.8582 kcal/mol |
74 138@LB@ | |@LB@5'-UUU...UGAUU AUCGC CU U G UU UC AAUG AAAAG...AUA-3'@LB@ GCGGCA UCUGUG UUGUU UUUUUUC U UUC GUGAUGA GGUUUUG GCAA@LB@ ||:||| ||::|: ||||: :|||:|| | ||| ||:|||| ||:||:| ||||@LB@ CGUCGU AGGUAU AACAG GAAAGAG A AAG CAUUACU CCGAAGC CGUU@LB@3'-AUU...ACAGG UCA AUUAC U U G UUU UA AA AGAAC...CAA-5'@LB@ | |@LB@ 138 73@LB@@LB@@LB@Energy -11.86 kcal/mol@LB@Hybridization Energy -41.3024 kcal/mol@LB@Unfolding Energy - mRNA 16.5538 kcal/mol@LB@Unfolding Energy - sRNA 14.8582 kcal/mol@LB@@LB@Position - mRNA 75 -- 137@LB@Position - sRNA 74 -- 137@LB@Position Seed - mRNA 123 -- 129@LB@Position Seed - sRNA 80 -- 86@LB@ |
90 |
0.003471 |
0.1486 |
bsu35950 |
rbsC |
-15.06 |
0.032267 |
242 -- 293 |
40 -- 84 |
ribose transport system permease RbsC |
|
_____________241______________________________________294\n_____________|________________________________________|\n5'-CAA...AUUCA_____AC_G____AU______AAC________________GUUUA...UCA-3'\n______________CUUCG__G_AGUC___GCAAA___UCG_GCCCGUUUCUUG\n______________|||||__|_|:||___|||||___|||_:|||:|:||||:\n______________GAAGC__C_UUAG___CGUUU___AGC_UGGGUAGAGAAU\n3'-AUU...UUACC_____AA_G____AAC_____GUU___A____________AAGGG...CAA-5'\n_____________|________________________________________|\n_____________85_______________________________________39\n |
273 -- 279 |
45 -- 51 |
-33.8346 kcal/mol |
9.61657 kcal/mol |
8.57091 kcal/mol |
241 294@LB@ | |@LB@5'-CAA...AUUCA AC G AU AAC GUUUA...UCA-3'@LB@ CUUCG G AGUC GCAAA UCG GCCCGUUUCUUG@LB@ ||||| | |:|| ||||| ||| :|||:|:||||:@LB@ GAAGC C UUAG CGUUU AGC UGGGUAGAGAAU@LB@3'-AUU...UUACC AA G AAC GUU A AAGGG...CAA-5'@LB@ | |@LB@ 85 39@LB@@LB@@LB@Energy -15.06 kcal/mol@LB@Hybridization Energy -33.8346 kcal/mol@LB@Unfolding Energy - mRNA 9.61657 kcal/mol@LB@Unfolding Energy - sRNA 8.57091 kcal/mol@LB@@LB@Position - mRNA 242 -- 293@LB@Position - sRNA 40 -- 84@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 45 -- 51@LB@ |
91 |
0.00349 |
0.1486 |
bsu28050 |
maf |
-6.37 |
0.874324 |
134 -- 184 |
39 -- 85 |
septum formation protein Maf |
|
_____________133_____185\n_____________|_______|\n5'-GAA...CCCUA_______AUUGU...AAG-3'\n______________CUCCAUU\n______________|:|||||\n______________GGGGUAA\n3'-AUU...AAUAA_______AGAAA...CAA-5'\n_____________|_______|\n_____________86______38\n |
275 -- 281 |
36 -- 42 |
-8.4297 kcal/mol |
0.414575 kcal/mol |
2.55634 kcal/mol |
133 185@LB@ | |@LB@5'-GAA...CCCUA AUUGU...AAG-3'@LB@ CUCCAUU@LB@ |:|||||@LB@ GGGGUAA@LB@3'-AUU...AAUAA AGAAA...CAA-5'@LB@ | |@LB@ 86 38@LB@@LB@@LB@Energy -6.37 kcal/mol@LB@Hybridization Energy -8.4297 kcal/mol@LB@Unfolding Energy - mRNA 0.414575 kcal/mol@LB@Unfolding Energy - sRNA 2.55634 kcal/mol@LB@@LB@Position - mRNA 134 -- 184@LB@Position - sRNA 39 -- 85@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 36 -- 42@LB@ |
92 |
0.003598 |
0.1515 |
bsu22200 |
cotD |
-17.29 |
0.010920 |
45 -- 158 |
37 -- 130 |
spore coat protein D |
|
_____________44________________________________________________________________________________________________________________________159\n_____________|_________________________________________________________________________________________________________________________|\n5'-AUU...UACUU_____U___U___GUAUUU___A________GU_________CUU___A__CA_____AA_____CACUUUUAAAAUAG_____U___UCAG_____________________________AACUU...ACC-3'\n______________GUUCU_UGU_GUG______UUG_UUGCUUUU__GUUUUCAAA___UAA_GA___GCUU__UUGCA______________GUCUU_GCA____AACA__UGUACCC____CUUAUUUUUCAU\n______________||||:_|:|_:||______|||_|::||||:__:|:||||||___|||_||___||||__|||||______________:||||_|||____||||__:||||||____||||||:::|||\n______________CAAGG_AUA_UAC______AAC_AGUGAAAG__UAGAAGUUU___AUU_CU___CGAA__AACGU______________UAGAA_CGU____UUGU__GCAUGGG____GAAUAAGGGGUA\n3'-AUU...UCGUU_____U___U_____________________AG_________C_____A__UAC____GC________________________C___________UA_______UAGA____________AAGAA...CAA-5'\n_____________|_________________________________________________________________________________________________________________________|\n_____________131_______________________________________________________________________________________________________________________36\n |
147 -- 153 |
42 -- 48 |
-55.4941 kcal/mol |
20.5826 kcal/mol |
23.6024 kcal/mol |
44 159@LB@ | |@LB@5'-AUU...UACUU U U GUAUUU A GU CUU A CA AA CACUUUUAAAAUAG U UCAG AACUU...ACC-3'@LB@ GUUCU UGU GUG UUG UUGCUUUU GUUUUCAAA UAA GA GCUU UUGCA GUCUU GCA AACA UGUACCC CUUAUUUUUCAU@LB@ ||||: |:| :|| ||| |::||||: :|:|||||| ||| || |||| ||||| :|||| ||| |||| :|||||| ||||||:::|||@LB@ CAAGG AUA UAC AAC AGUGAAAG UAGAAGUUU AUU CU CGAA AACGU UAGAA CGU UUGU GCAUGGG GAAUAAGGGGUA@LB@3'-AUU...UCGUU U U AG C A UAC GC C UA UAGA AAGAA...CAA-5'@LB@ | |@LB@ 131 36@LB@@LB@@LB@Energy -17.29 kcal/mol@LB@Hybridization Energy -55.4941 kcal/mol@LB@Unfolding Energy - mRNA 20.5826 kcal/mol@LB@Unfolding Energy - sRNA 23.6024 kcal/mol@LB@@LB@Position - mRNA 45 -- 158@LB@Position - sRNA 37 -- 130@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 42 -- 48@LB@ |
93 |
0.003652 |
0.1515 |
bsu03060 |
lctP |
-13.96 |
0.054584 |
161 -- 227 |
49 -- 115 |
L-lactate permease |
bsu34190 |
_____________160_______________________________________________________________________228\n_____________|_________________________________________________________________________|\n5'-CGG...AAAAA___A___AACCG__A___________AG_______GA____U____G_______________AUG________GGAAA...UGA-3'\n______________GUC_ACU_____CA_CUUUAGAGUAA_____GGCU___UUG_CAAU__UGG_GAGCAGUUGU___AUCCGUUU\n______________|||_|||_____||_|||:|:|||||_____||||___|||_||||__|||_:|:||:|:||___|:||:|:|\n______________CAG_UGA_____GU_GAAGUUUCAUU_____CCGA___AAC_GUUA__ACC_UUUGUUAGCA___UGGGUAGA\n3'-AUU...UACAA_______AAGA___A___________ACUUA____AGC________GA___G_____________________GAAUA...CAA-5'\n_____________|_________________________________________________________________________|\n_____________116_______________________________________________________________________48\n |
220 -- 226 |
50 -- 56 |
-45.5058 kcal/mol |
15.3983 kcal/mol |
19.8755 kcal/mol |
160 228@LB@ | |@LB@5'-CGG...AAAAA A AACCG A AG GA U G AUG GGAAA...UGA-3'@LB@ GUC ACU CA CUUUAGAGUAA GGCU UUG CAAU UGG GAGCAGUUGU AUCCGUUU@LB@ ||| ||| || |||:|:||||| |||| ||| |||| ||| :|:||:|:|| |:||:|:|@LB@ CAG UGA GU GAAGUUUCAUU CCGA AAC GUUA ACC UUUGUUAGCA UGGGUAGA@LB@3'-AUU...UACAA AAGA A ACUUA AGC GA G GAAUA...CAA-5'@LB@ | |@LB@ 116 48@LB@@LB@@LB@Energy -13.96 kcal/mol@LB@Hybridization Energy -45.5058 kcal/mol@LB@Unfolding Energy - mRNA 15.3983 kcal/mol@LB@Unfolding Energy - sRNA 19.8755 kcal/mol@LB@@LB@Position - mRNA 161 -- 227@LB@Position - sRNA 49 -- 115@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 50 -- 56@LB@ |
94 |
0.003675 |
0.1515 |
bsu40130 |
yydK |
-17.16 |
0.011624 |
17 -- 47 |
34 -- 60 |
HTH-type transcriptional regulator YydK |
|
_____________16___________________________________48\n_____________|____________________________________|\n__________5'-A_____UUU__U___C_________CUC_________CCCGA...UGG-3'\n______________UGUCU___GC_AGU_UCGUAUAAU____UCACUUUC\n______________||||:___||_|||_:|:||||||____||||||||\n______________ACAGG___CG_UCA_GGUAUAUUA____AGUGAAAG\n3'-AUU...CUGUA_____CGU__U___A_________CAAC________AGUAG...CAA-5'\n_____________|____________________________________|\n_____________61___________________________________33\n |
30 -- 36 |
107 -- 113 |
-26.8798 kcal/mol |
2.26958 kcal/mol |
10.0128 kcal/mol |
16 48@LB@ | |@LB@ 5'-A UUU U C CUC CCCGA...UGG-3'@LB@ UGUCU GC AGU UCGUAUAAU UCACUUUC@LB@ ||||: || ||| :|:|||||| ||||||||@LB@ ACAGG CG UCA GGUAUAUUA AGUGAAAG@LB@3'-AUU...CUGUA CGU U A CAAC AGUAG...CAA-5'@LB@ | |@LB@ 61 33@LB@@LB@@LB@Energy -17.16 kcal/mol@LB@Hybridization Energy -26.8798 kcal/mol@LB@Unfolding Energy - mRNA 2.26958 kcal/mol@LB@Unfolding Energy - sRNA 10.0128 kcal/mol@LB@@LB@Position - mRNA 17 -- 47@LB@Position - sRNA 34 -- 60@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 107 -- 113@LB@ |
95 |
0.003784 |
0.1541 |
bsu12910 |
proG |
-16.76 |
0.014152 |
1 -- 50 |
33 -- 83 |
pyrroline-5-carboxylate reductase 3 |
|
______________1______________________________________________________51\n______________|______________________________________________________|\n___________5'-________U_________UC_____A_U________A_______A_U________CUAUU...UUG-3'\n______________UUCGUU_C_GUUUU__CA__ACGAU_G_UAUCCAUC___UGUUC_C_CCGUUUCU\n______________||||||_|_:|:||__||__||:||_|_||:|||||___|:|||_|_||:|||||\n______________AAGCAA_G_UAGAA__GU__UGUUA_C_AUGGGUAG___AUAAG_G_GGUAAAGA\n3'-AUU...UACCG______C_U_____CC__U______G__________AGA________________AACUU...CAA-5'\n_____________|_______________________________________________________|\n_____________84______________________________________________________32\n |
44 -- 50 |
33 -- 39 |
-32.4348 kcal/mol |
4.82786 kcal/mol |
13.9589 kcal/mol |
1 51@LB@ | |@LB@ 5'- U UC A U A A U CUAUU...UUG-3'@LB@ UUCGUU C GUUUU CA ACGAU G UAUCCAUC UGUUC C CCGUUUCU@LB@ |||||| | :|:|| || ||:|| | ||:||||| |:||| | ||:|||||@LB@ AAGCAA G UAGAA GU UGUUA C AUGGGUAG AUAAG G GGUAAAGA@LB@3'-AUU...UACCG C U CC U G AGA AACUU...CAA-5'@LB@ | |@LB@ 84 32@LB@@LB@@LB@Energy -16.76 kcal/mol@LB@Hybridization Energy -32.4348 kcal/mol@LB@Unfolding Energy - mRNA 4.82786 kcal/mol@LB@Unfolding Energy - sRNA 13.9589 kcal/mol@LB@@LB@Position - mRNA 1 -- 50@LB@Position - sRNA 33 -- 83@LB@Position Seed - mRNA 44 -- 50@LB@Position Seed - sRNA 33 -- 39@LB@ |
96 |
0.003858 |
0.1541 |
bsu03700 |
gerKA |
-12.88 |
0.090279 |
45 -- 139 |
38 -- 125 |
spore germination protein KA |
|
_____________44_________________________________________140\n_____________|__________________________________________|\n5'-UUG...CCUCC_____UAG___CU___U________GA____A____G_____AACCC...CGG-3'\n______________GCUUU___UGU__AUC_UUGGCGGA__AGUU_UACC_CAUCU\n______________||||:___||:__|||_|||||::|__|:|:_||||_|||||\n______________CGAAG___ACG__UAG_AACCGUUU__UUAG_AUGG_GUAGA\n3'-AUU...CUUAC_____CA____U_____________G_____C__________GAAUA...CAA-5'\n_____________|__________________________________________|\n_____________126________________________________________37\n |
108 -- 114 |
65 -- 71 |
-29.7431 kcal/mol |
10.7852 kcal/mol |
9.08698 kcal/mol |
44 140@LB@ | |@LB@5'-UUG...CCUCC UAG CU U GA A G AACCC...CGG-3'@LB@ GCUUU UGU AUC UUGGCGGA AGUU UACC CAUCU@LB@ ||||: ||: ||| |||||::| |:|: |||| |||||@LB@ CGAAG ACG UAG AACCGUUU UUAG AUGG GUAGA@LB@3'-AUU...CUUAC CA U G C GAAUA...CAA-5'@LB@ | |@LB@ 126 37@LB@@LB@@LB@Energy -12.88 kcal/mol@LB@Hybridization Energy -29.7431 kcal/mol@LB@Unfolding Energy - mRNA 10.7852 kcal/mol@LB@Unfolding Energy - sRNA 9.08698 kcal/mol@LB@@LB@Position - mRNA 45 -- 139@LB@Position - sRNA 38 -- 125@LB@Position Seed - mRNA 108 -- 114@LB@Position Seed - sRNA 65 -- 71@LB@ |
97 |
0.003858 |
0.1541 |
bsu32520 |
pucG |
-15.24 |
0.029596 |
117 -- 232 |
36 -- 162 |
purine catabolism protein PucG |
|
_____________116_____________________________________________________________________________________________________________________________________233\n_____________|_______________________________________________________________________________________________________________________________________|\n5'-UGA...AUAUA_______CA____GC____G__CGGC__________CUGA__GAUUUAUUAUACAA___GG_______GA_____GAG_________GU_________A_______A__GAAU___G__________________AAGAA...CGG-3'\n______________CGUCAGC__GACA__UUGA_AU____GUCCGC_GCA____CU______________ACU__CUUA_CU__UAAAG____GAAUGGCU________GUC__GGCAGA_GA____UAU_CA_________CCCCGUU\n______________|:|||:|__||||__||||_||____||||||_|||____|:______________|||__||:|_||__:||||____||||||||________:||__||||:|_:|____||:_||_________||||:||\n______________GUAGUUG__CUGU__AACU_UA____CAGGCG_CGU____GG______________UGA__GAGU_GA__GUUUC____CUUACCGA________UAG__CCGUUU_UU____AUG_GU_________GGGGUAA\n3'-AUU...GAGAA_______UC__________G__A_________U___UCAA__UAUAUUACAACAG____AA____A__A______AUUA________AGCAACGU___AA______G__AGC____G__AGAGAAUAA_______AGAAA...CAA-5'\n_____________|_______________________________________________________________________________________________________________________________________|\n_____________163_____________________________________________________________________________________________________________________________________35\n |
226 -- 232 |
36 -- 42 |
-68.3253 kcal/mol |
25.8271 kcal/mol |
31.2699 kcal/mol |
116 233@LB@ | |@LB@5'-UGA...AUAUA CA GC G CGGC CUGA GAUUUAUUAUACAA GG GA GAG GU A A GAAU G AAGAA...CGG-3'@LB@ CGUCAGC GACA UUGA AU GUCCGC GCA CU ACU CUUA CU UAAAG GAAUGGCU GUC GGCAGA GA UAU CA CCCCGUU@LB@ |:|||:| |||| |||| || |||||| ||| |: ||| ||:| || :|||| |||||||| :|| ||||:| :| ||: || ||||:||@LB@ GUAGUUG CUGU AACU UA CAGGCG CGU GG UGA GAGU GA GUUUC CUUACCGA UAG CCGUUU UU AUG GU GGGGUAA@LB@3'-AUU...GAGAA UC G A U UCAA UAUAUUACAACAG AA A A AUUA AGCAACGU AA G AGC G AGAGAAUAA AGAAA...CAA-5'@LB@ | |@LB@ 163 35@LB@@LB@@LB@Energy -15.24 kcal/mol@LB@Hybridization Energy -68.3253 kcal/mol@LB@Unfolding Energy - mRNA 25.8271 kcal/mol@LB@Unfolding Energy - sRNA 31.2699 kcal/mol@LB@@LB@Position - mRNA 117 -- 232@LB@Position - sRNA 36 -- 162@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 36 -- 42@LB@ |
98 |
0.003906 |
0.1544 |
bsu29990 |
pbuO |
-11.33 |
0.180719 |
218 -- 233 |
123 -- 137 |
guanine/hypoxanthine permease PbuO |
|
_____________217______________234\n_____________|________________|\n5'-GGU...AAAGA_______ACA______AAGCA...CGG-3'\n______________GCAGCAA___UCCAUA\n______________|||||||___||||||\n______________CGUCGUU___AGGUAU\n3'-AUU...ACAGG_______CA_______AUUAC...CAA-5'\n_____________|________________|\n_____________138______________122\n |
218 -- 224 |
131 -- 137 |
-16.3971 kcal/mol |
2.46726 kcal/mol |
3.21202 kcal/mol |
217 234@LB@ | |@LB@5'-GGU...AAAGA ACA AAGCA...CGG-3'@LB@ GCAGCAA UCCAUA@LB@ ||||||| ||||||@LB@ CGUCGUU AGGUAU@LB@3'-AUU...ACAGG CA AUUAC...CAA-5'@LB@ | |@LB@ 138 122@LB@@LB@@LB@Energy -11.33 kcal/mol@LB@Hybridization Energy -16.3971 kcal/mol@LB@Unfolding Energy - mRNA 2.46726 kcal/mol@LB@Unfolding Energy - sRNA 3.21202 kcal/mol@LB@@LB@Position - mRNA 218 -- 233@LB@Position - sRNA 123 -- 137@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 131 -- 137@LB@ |
99 |
0.004027 |
0.1561 |
bsu13870 |
ykvZ |
-9.91 |
0.324242 |
1 -- 15 |
1 -- 17 |
LacI family transcriptional regulator |
|
______________1________________16\n______________|________________|\n___________5'-__________A______UUUGG...GAA-3'\n______________GUUUAAUUUC___UGUU\n______________|:||||||||___||||\n______________CGAAUUAAAG___ACAA\n3'-AUU...UUUUG__________AAA____-5'\n_____________|________________|\n_____________18_______________1\n |
4 -- 10 |
8 -- 14 |
-10.8546 kcal/mol |
0.387335 kcal/mol |
1.29438 kcal/mol |
1 16@LB@ | |@LB@ 5'- A UUUGG...GAA-3'@LB@ GUUUAAUUUC UGUU@LB@ |:|||||||| ||||@LB@ CGAAUUAAAG ACAA@LB@3'-AUU...UUUUG AAA -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -9.91 kcal/mol@LB@Hybridization Energy -10.8546 kcal/mol@LB@Unfolding Energy - mRNA 0.387335 kcal/mol@LB@Unfolding Energy - sRNA 1.29438 kcal/mol@LB@@LB@Position - mRNA 1 -- 15@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 4 -- 10@LB@Position Seed - sRNA 8 -- 14@LB@ |
100 |
0.004029 |
0.1561 |
bsu32980 |
yusZ |
-14.16 |
0.049671 |
3 -- 55 |
39 -- 90 |
oxidoreductase |
|
_____________2______________________________________56\n_____________|______________________________________|\n5'-CCG...GUCAU_____GUU_______GU____AUAG_____________AAUAG...CAA-3'\n______________UUCGU___CAGGAUA___ACA____CUGUAGCA_GUUU\n______________|||:|___|||||:|___|||____|:|:||||_|||:\n______________AAGUA___GUCCUGU___UGU____GGCGUCGU_CAAG\n3'-AUU...AUGAG_____GUU_______AAC___AACA________U____GUAUA...CAA-5'\n_____________|______________________________________|\n_____________91_____________________________________38\n |
175 -- 181 |
132 -- 138 |
-30.394 kcal/mol |
8.27302 kcal/mol |
10.1352 kcal/mol |
2 56@LB@ | |@LB@5'-CCG...GUCAU GUU GU AUAG AAUAG...CAA-3'@LB@ UUCGU CAGGAUA ACA CUGUAGCA GUUU@LB@ |||:| |||||:| ||| |:|:|||| |||:@LB@ AAGUA GUCCUGU UGU GGCGUCGU CAAG@LB@3'-AUU...AUGAG GUU AAC AACA U GUAUA...CAA-5'@LB@ | |@LB@ 91 38@LB@@LB@@LB@Energy -14.16 kcal/mol@LB@Hybridization Energy -30.394 kcal/mol@LB@Unfolding Energy - mRNA 8.27302 kcal/mol@LB@Unfolding Energy - sRNA 10.1352 kcal/mol@LB@@LB@Position - mRNA 3 -- 55@LB@Position - sRNA 39 -- 90@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 132 -- 138@LB@ |
101 |
0.004166 |
0.1594 |
bsu11270 |
yjzD |
-8.07 |
0.607351 |
275 -- 290 |
119 -- 136 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________274________________291\n_____________|__________________|\n5'-UAG...AUGAA________UA________UUCAA...CAU-3'\n______________CAGC__GU__CGUAUAAU\n______________||||__||__|:||||||\n______________GUCG__CA__GUAUAUUA\n3'-AUU...CAGGC____UU__AG________CAACA...CAA-5'\n_____________|__________________|\n_____________137________________118\n |
284 -- 290 |
119 -- 125 |
-12.692 kcal/mol |
1.37877 kcal/mol |
3.96273 kcal/mol |
274 291@LB@ | |@LB@5'-UAG...AUGAA UA UUCAA...CAU-3'@LB@ CAGC GU CGUAUAAU@LB@ |||| || |:||||||@LB@ GUCG CA GUAUAUUA@LB@3'-AUU...CAGGC UU AG CAACA...CAA-5'@LB@ | |@LB@ 137 118@LB@@LB@@LB@Energy -8.07 kcal/mol@LB@Hybridization Energy -12.692 kcal/mol@LB@Unfolding Energy - mRNA 1.37877 kcal/mol@LB@Unfolding Energy - sRNA 3.96273 kcal/mol@LB@@LB@Position - mRNA 275 -- 290@LB@Position - sRNA 119 -- 136@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 119 -- 125@LB@ |
102 |
0.004212 |
0.1594 |
bsu10510 |
yhjH |
-17.94 |
0.007893 |
238 -- 265 |
152 -- 183 |
MarR family transcriptional regulator |
|
_____________237________________266\n_____________|__________________|\n5'-GCA...GCGGA____A_____________GAAAU...CUG-3'\n______________GCUC_UUCAUCAGCAGGA\n______________:|||_|||||||:|||||\n______________UGAG_AAGUAGUUGUCCU\n3'-AUU...AAAAA__________________GUAAC...CAA-5'\n_____________|__________________|\n_____________184________________151\n |
259 -- 265 |
152 -- 158 |
-25.8948 kcal/mol |
5.0064 kcal/mol |
6.06644 kcal/mol |
237 266@LB@ | |@LB@5'-GCA...GCGGA A GAAAU...CUG-3'@LB@ GCUC UUCAUCAGCAGGA@LB@ :||| |||||||:|||||@LB@ UGAG AAGUAGUUGUCCU@LB@3'-AUU...AAAAA GUAAC...CAA-5'@LB@ | |@LB@ 184 151@LB@@LB@@LB@Energy -17.94 kcal/mol@LB@Hybridization Energy -25.8948 kcal/mol@LB@Unfolding Energy - mRNA 5.0064 kcal/mol@LB@Unfolding Energy - sRNA 6.06644 kcal/mol@LB@@LB@Position - mRNA 238 -- 265@LB@Position - sRNA 152 -- 183@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 152 -- 158@LB@ |
103 |
0.004238 |
0.1594 |
bsu09690 |
nhaX |
-18.33 |
0.006526 |
38 -- 80 |
34 -- 77 |
stress response protein NhaX |
|
_____________37________________________________________________81\n_____________|_________________________________________________|\n5'-GGU...AACAC____AUUC_______U____________________CCA____G_____AUCUU...CCG-3'\n______________GCAA____CUUGGCA_AGCAA____ACCC_UC_CUU___UUCU_AUUUC\n______________||||____|||||||_|:|||____||||_||_|||___|:|:_|||||\n______________CGUU____GAACCGU_UUGUU____UGGG_AG_GAA___AGGG_UAAAG\n3'-AUU...AGCAA____A________________AGCA____U__A___UA_____G_____AAACU...CAA-5'\n_____________|_________________________________________________|\n_____________78________________________________________________33\n |
46 -- 52 |
66 -- 72 |
-32.0538 kcal/mol |
3.14542 kcal/mol |
13.7939 kcal/mol |
37 81@LB@ | |@LB@5'-GGU...AACAC AUUC U CCA G AUCUU...CCG-3'@LB@ GCAA CUUGGCA AGCAA ACCC UC CUU UUCU AUUUC@LB@ |||| ||||||| |:||| |||| || ||| |:|: |||||@LB@ CGUU GAACCGU UUGUU UGGG AG GAA AGGG UAAAG@LB@3'-AUU...AGCAA A AGCA U A UA G AAACU...CAA-5'@LB@ | |@LB@ 78 33@LB@@LB@@LB@Energy -18.33 kcal/mol@LB@Hybridization Energy -32.0538 kcal/mol@LB@Unfolding Energy - mRNA 3.14542 kcal/mol@LB@Unfolding Energy - sRNA 13.7939 kcal/mol@LB@@LB@Position - mRNA 38 -- 80@LB@Position - sRNA 34 -- 77@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 66 -- 72@LB@ |
104 |
0.004338 |
0.1606 |
bsu08000 |
yfjQ |
-9.77 |
0.342120 |
136 -- 162 |
103 -- 137 |
metal ion transporter YfjQ |
bsu24740 |
_____________135_______________163\n_____________|_________________|\n5'-CAU...AUUAG____A____A_______CUUUU...AUU-3'\n______________GCAG_GAGU_CCGUAUA\n______________||||_:|||_||:||||\n______________CGUC_UUCA_GGUAUAU\n3'-AUU...ACAGG____G____A_______UACAA...CAA-5'\n_____________|_________________|\n_____________138_______________102\n |
146 -- 152 |
121 -- 127 |
-16.4629 kcal/mol |
4.99509 kcal/mol |
3.33887 kcal/mol |
135 163@LB@ | |@LB@5'-CAU...AUUAG A A CUUUU...AUU-3'@LB@ GCAG GAGU CCGUAUA@LB@ |||| :||| ||:||||@LB@ CGUC UUCA GGUAUAU@LB@3'-AUU...ACAGG G A UACAA...CAA-5'@LB@ | |@LB@ 138 102@LB@@LB@@LB@Energy -9.77 kcal/mol@LB@Hybridization Energy -16.4629 kcal/mol@LB@Unfolding Energy - mRNA 4.99509 kcal/mol@LB@Unfolding Energy - sRNA 3.33887 kcal/mol@LB@@LB@Position - mRNA 136 -- 162@LB@Position - sRNA 103 -- 137@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 121 -- 127@LB@ |
105 |
0.004352 |
0.1606 |
bsu05340 |
ydfA |
-10.81 |
0.225539 |
212 -- 245 |
38 -- 75 |
arsenic pump protein |
|
_____________211____________________________246\n_____________|______________________________|\n5'-AGC...UCAAU______________________________UAUUA...GAG-3'\n______________GAUUUUGGCA_______GUAUUCAUCUUUU\n______________:||:||||||_______|||::|||||:||\n______________UUAGAACCGU_______CAUGGGUAGAGAA\n3'-AUU...CAACG__________UUGUUAG_____________UAAGG...CAA-5'\n_____________|______________________________|\n_____________76_____________________________37\n |
227 -- 233 |
47 -- 53 |
-24.4224 kcal/mol |
4.10196 kcal/mol |
8.49986 kcal/mol |
211 246@LB@ | |@LB@5'-AGC...UCAAU UAUUA...GAG-3'@LB@ GAUUUUGGCA GUAUUCAUCUUUU@LB@ :||:|||||| |||::|||||:||@LB@ UUAGAACCGU CAUGGGUAGAGAA@LB@3'-AUU...CAACG UUGUUAG UAAGG...CAA-5'@LB@ | |@LB@ 76 37@LB@@LB@@LB@Energy -10.81 kcal/mol@LB@Hybridization Energy -24.4224 kcal/mol@LB@Unfolding Energy - mRNA 4.10196 kcal/mol@LB@Unfolding Energy - sRNA 8.49986 kcal/mol@LB@@LB@Position - mRNA 212 -- 245@LB@Position - sRNA 38 -- 75@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 47 -- 53@LB@ |
106 |
0.004415 |
0.1614 |
bsu10790 |
asnO |
-17.17 |
0.011578 |
3 -- 52 |
32 -- 73 |
asparagine synthetase 3 |
|
_____________2__________________________________________________53\n_____________|__________________________________________________|\n_________5'-CC___GUAUAU_________U________AUCCAUGCUG_____UU______CAUUC...CUG-3'\n______________UCU______AACAAUUGU_UCCGUUUC__________UCUCC__UUUCUU\n______________|||______||||||:||_:||:|:||__________||:||__||||||\n______________AGA______UUGUUAGCA_GGGUAGAG__________AGGGG__AAAGAA\n3'-AUU...ACGUU___ACCGU__________U________AAUA___________U_______ACUUU...CAA-5'\n_____________|__________________________________________________|\n_____________74_________________________________________________31\n |
23 -- 29 |
48 -- 54 |
-28.5385 kcal/mol |
1.12136 kcal/mol |
12.9474 kcal/mol |
2 53@LB@ | |@LB@ 5'-CC GUAUAU U AUCCAUGCUG UU CAUUC...CUG-3'@LB@ UCU AACAAUUGU UCCGUUUC UCUCC UUUCUU@LB@ ||| ||||||:|| :||:|:|| ||:|| ||||||@LB@ AGA UUGUUAGCA GGGUAGAG AGGGG AAAGAA@LB@3'-AUU...ACGUU ACCGU U AAUA U ACUUU...CAA-5'@LB@ | |@LB@ 74 31@LB@@LB@@LB@Energy -17.17 kcal/mol@LB@Hybridization Energy -28.5385 kcal/mol@LB@Unfolding Energy - mRNA 1.12136 kcal/mol@LB@Unfolding Energy - sRNA 12.9474 kcal/mol@LB@@LB@Position - mRNA 3 -- 52@LB@Position - sRNA 32 -- 73@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 48 -- 54@LB@ |
107 |
0.004539 |
0.1633 |
bsu11020 |
yitK |
-8.14 |
0.595243 |
151 -- 171 |
155 -- 171 |
nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription |
|
_____________150___________________172\n_____________|_____________________|\n5'-ACC...UUCUC________ACUAUA_______CAUAA...AUG-3'\n______________UUUAUUCU______AUCAACA\n______________||||:|||______|||||||\n______________AAAUGAGA______UAGUUGU\n3'-AUU...AAAAA________AG___________CCUGU...CAA-5'\n_____________|_____________________|\n_____________172___________________154\n |
165 -- 171 |
155 -- 161 |
-10.3591 kcal/mol |
1.70839 kcal/mol |
1.4241 kcal/mol |
150 172@LB@ | |@LB@5'-ACC...UUCUC ACUAUA CAUAA...AUG-3'@LB@ UUUAUUCU AUCAACA@LB@ ||||:||| |||||||@LB@ AAAUGAGA UAGUUGU@LB@3'-AUU...AAAAA AG CCUGU...CAA-5'@LB@ | |@LB@ 172 154@LB@@LB@@LB@Energy -8.14 kcal/mol@LB@Hybridization Energy -10.3591 kcal/mol@LB@Unfolding Energy - mRNA 1.70839 kcal/mol@LB@Unfolding Energy - sRNA 1.4241 kcal/mol@LB@@LB@Position - mRNA 151 -- 171@LB@Position - sRNA 155 -- 171@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 155 -- 161@LB@ |
108 |
0.004583 |
0.1633 |
bsu07910 |
yfkF |
-13.96 |
0.054522 |
60 -- 82 |
157 -- 179 |
MFS transporter |
|
_____________59______________83\n_____________|_______________|\n5'-GGC...UUAUU_______________AAACC...CAA-3'\n______________UUUAUUCUUCA_CAA\n______________||||:||||||_|||\n______________AAAUGAGAAGU_GUU\n3'-AUU...AAAAA___________A___GUCCU...CAA-5'\n_____________|_______________|\n_____________180_____________156\n |
73 -- 79 |
161 -- 167 |
-12.117 kcal/mol |
0.967911 kcal/mol |
1.36352 kcal/mol |
59 83@LB@ | |@LB@5'-GGC...UUAUU AAACC...CAA-3'@LB@ UUUAUUCUUCA CAA@LB@ ||||:|||||| |||@LB@ AAAUGAGAAGU GUU@LB@3'-AUU...AAAAA A GUCCU...CAA-5'@LB@ | |@LB@ 180 156@LB@@LB@@LB@Energy -13.96 kcal/mol@LB@Hybridization Energy -12.117 kcal/mol@LB@Unfolding Energy - mRNA 0.967911 kcal/mol@LB@Unfolding Energy - sRNA 1.36352 kcal/mol@LB@@LB@Position - mRNA 60 -- 82@LB@Position - sRNA 157 -- 179@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 161 -- 167@LB@ |
109 |
0.004595 |
0.1633 |
bsu02700 |
estA |
-7.85 |
0.646397 |
289 -- 295 |
181 -- 187 |
lipase EstA |
bsu08350 |
_____________288_______296\n_____________|_________|\n5'-AUC...CUUAA_________AAAAA...AAC-3'\n______________AAUUUCUUU\n______________|||||||||\n______________UUAAAGAAA\n3'-AUU...GCGAA_________ACAA-5'\n_____________|_________|\n_____________188_______180\n |
109 -- 115 |
5 -- 11 |
-6.84044 kcal/mol |
1.42932 kcal/mol |
0.176622 kcal/mol |
288 296@LB@ | |@LB@5'-AUC...CUUAA AAAAA...AAC-3'@LB@ AAUUUCUUU@LB@ |||||||||@LB@ UUAAAGAAA@LB@3'-AUU...GCGAA ACAA-5'@LB@ | |@LB@ 188 180@LB@@LB@@LB@Energy -7.85 kcal/mol@LB@Hybridization Energy -6.84044 kcal/mol@LB@Unfolding Energy - mRNA 1.42932 kcal/mol@LB@Unfolding Energy - sRNA 0.176622 kcal/mol@LB@@LB@Position - mRNA 289 -- 295@LB@Position - sRNA 181 -- 187@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 5 -- 11@LB@ |
110 |
0.004746 |
0.1671 |
bsu09940 |
yhaL |
-13.90 |
0.056226 |
141 -- 159 |
37 -- 56 |
sporulation protein YhaL |
|
_____________140______________________________________160\n_____________|________________________________________|\n5'-GAA...UUUUU____________GUA___U____U___A_GCA________AGCGC...ACC-3'\n______________UCCGUGGUGGGU___UCU_UGUA_UGU_G___UCAUUUUC\n______________||||::|:::||___||:_|:||_|||_|___|||:||||\n______________AGGCGUCGUUCA___AGG_AUAU_ACA_C___AGUGAAAG\n3'-AUU...GUAAC__________________U____U___A____________AGUAG...CAA-5'\n_____________|________________________________________|\n_____________57_______________________________________36\n |
245 -- 251 |
107 -- 113 |
-27.9954 kcal/mol |
7.44184 kcal/mol |
9.97721 kcal/mol |
140 160@LB@ | |@LB@5'-GAA...UUUUU GUA U U A GCA AGCGC...ACC-3'@LB@ UCCGUGGUGGGU UCU UGUA UGU G UCAUUUUC@LB@ ||||::|:::|| ||: |:|| ||| | |||:||||@LB@ AGGCGUCGUUCA AGG AUAU ACA C AGUGAAAG@LB@3'-AUU...GUAAC U U A AGUAG...CAA-5'@LB@ | |@LB@ 57 36@LB@@LB@@LB@Energy -13.90 kcal/mol@LB@Hybridization Energy -27.9954 kcal/mol@LB@Unfolding Energy - mRNA 7.44184 kcal/mol@LB@Unfolding Energy - sRNA 9.97721 kcal/mol@LB@@LB@Position - mRNA 141 -- 159@LB@Position - sRNA 37 -- 56@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 107 -- 113@LB@ |
111 |
0.004819 |
0.1671 |
bsu32120 |
yuzG |
-7.22 |
0.752372 |
165 -- 182 |
149 -- 166 |
Evidence 5: No homology to any previously reported sequences |
|
_____________164______________________________________183\n_____________|________________________________________|\n5'-UAG...UCUUU_____A_G_ACA__G__AAG__A________GAUG_____AAACG...UGG-3'\n______________AUGGC_U_G___UG_GA____G_GCGAAUAA____GCCCA\n______________|||||_|_|___||_:|____|_||:||:||____:||||\n______________UACCG_A_C___AC_UU____C_CGUUUGUU____UGGGU\n3'-AUU...UUACU_____A_G_A____G__AGAA__________AGCA_____AGAGA...CAA-5'\n_____________|________________________________________|\n_____________167______________________________________148\n |
192 -- 198 |
62 -- 68 |
-24.2214 kcal/mol |
8.24153 kcal/mol |
10.1588 kcal/mol |
164 183@LB@ | |@LB@5'-UAG...UCUUU A G ACA G AAG A GAUG AAACG...UGG-3'@LB@ AUGGC U G UG GA G GCGAAUAA GCCCA@LB@ ||||| | | || :| | ||:||:|| :||||@LB@ UACCG A C AC UU C CGUUUGUU UGGGU@LB@3'-AUU...UUACU A G A G AGAA AGCA AGAGA...CAA-5'@LB@ | |@LB@ 167 148@LB@@LB@@LB@Energy -7.22 kcal/mol@LB@Hybridization Energy -24.2214 kcal/mol@LB@Unfolding Energy - mRNA 8.24153 kcal/mol@LB@Unfolding Energy - sRNA 10.1588 kcal/mol@LB@@LB@Position - mRNA 165 -- 182@LB@Position - sRNA 149 -- 166@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 62 -- 68@LB@ |
112 |
0.00483 |
0.1671 |
bsu26010 |
yqbQ |
-18.75 |
0.005285 |
180 -- 239 |
82 -- 139 |
Evidence 4: Homologs of previously reported genes of unknown function |
bsu12700 |
_____________179______________________________________________________________240\n_____________|________________________________________________________________|\n5'-CUA...AAAUA_______________G______ACA__AUAGA___________A______AAACG_________GAGCU...UUA-3'\n______________CCGCAGUAAG___CA_GUGAUG___UG_____AC_UUUUCGUC_UUAAAG_____GAAUGGCUU\n______________||||||:|||___||_:|:|||___||_____||_||:||:||_|:||||_____|||||||||\n______________GGCGUCGUUC___GU_UAUUAC___AC_____UG_AAGAGUAG_AGUUUC_____CUUACCGAA\n3'-AUU...UAACA__________AAG__A______A____AG_____A________A______AUUA__________GCAAC...CAA-5'\n_____________|________________________________________________________________|\n_____________140______________________________________________________________81\n |
233 -- 239 |
82 -- 88 |
-46.2512 kcal/mol |
11.9879 kcal/mol |
18.3017 kcal/mol |
179 240@LB@ | |@LB@5'-CUA...AAAUA G ACA AUAGA A AAACG GAGCU...UUA-3'@LB@ CCGCAGUAAG CA GUGAUG UG AC UUUUCGUC UUAAAG GAAUGGCUU@LB@ ||||||:||| || :|:||| || || ||:||:|| |:|||| |||||||||@LB@ GGCGUCGUUC GU UAUUAC AC UG AAGAGUAG AGUUUC CUUACCGAA@LB@3'-AUU...UAACA AAG A A AG A A AUUA GCAAC...CAA-5'@LB@ | |@LB@ 140 81@LB@@LB@@LB@Energy -18.75 kcal/mol@LB@Hybridization Energy -46.2512 kcal/mol@LB@Unfolding Energy - mRNA 11.9879 kcal/mol@LB@Unfolding Energy - sRNA 18.3017 kcal/mol@LB@@LB@Position - mRNA 180 -- 239@LB@Position - sRNA 82 -- 139@LB@Position Seed - mRNA 233 -- 239@LB@Position Seed - sRNA 82 -- 88@LB@ |
113 |
0.005141 |
0.1741 |
bsu36080 |
ywrF |
-10.09 |
0.302867 |
265 -- 274 |
38 -- 47 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________264________275\n_____________|__________|\n5'-UGG...UACCG__________CCCCA...UUU-3'\n______________UUAUUCCCCG\n______________|||||||||:\n______________AAUAAGGGGU\n3'-AUU...UAGAG__________AAAGA...CAA-5'\n_____________|__________|\n_____________48_________37\n |
268 -- 274 |
38 -- 44 |
-13.6226 kcal/mol |
1.45475 kcal/mol |
3.86656 kcal/mol |
264 275@LB@ | |@LB@5'-UGG...UACCG CCCCA...UUU-3'@LB@ UUAUUCCCCG@LB@ |||||||||:@LB@ AAUAAGGGGU@LB@3'-AUU...UAGAG AAAGA...CAA-5'@LB@ | |@LB@ 48 37@LB@@LB@@LB@Energy -10.09 kcal/mol@LB@Hybridization Energy -13.6226 kcal/mol@LB@Unfolding Energy - mRNA 1.45475 kcal/mol@LB@Unfolding Energy - sRNA 3.86656 kcal/mol@LB@@LB@Position - mRNA 265 -- 274@LB@Position - sRNA 38 -- 47@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 38 -- 44@LB@ |
114 |
0.005219 |
0.1741 |
bsu18630 |
exlX |
-14.36 |
0.045196 |
231 -- 263 |
38 -- 88 |
expansin-YoaJ |
|
_____________230________________________________________________________264\n_____________|__________________________________________________________|\n5'-GGG...AGAUC_______CA_______GUA________UU________U____________________CAAGC...GUU-3'\n______________AUGAGUG__UUUGUUG___UGGUUUUG___GACGAUC___UCUGUUUU____UCCCCG\n______________||||:||__||:||||___:::|:|||___:||:|||___:|::|:|:____|||||:\n______________UACUUAC__AAGCAAC___GUUAGAAC___UUGUUAG___GGGUAGAG____AGGGGU\n3'-AUU...UUCAU_______CG__________________CGU_______CAU________AAUA______AAAGA...CAA-5'\n_____________|__________________________________________________________|\n_____________89_________________________________________________________37\n |
242 -- 248 |
59 -- 65 |
-36.6264 kcal/mol |
9.40493 kcal/mol |
14.3562 kcal/mol |
230 264@LB@ | |@LB@5'-GGG...AGAUC CA GUA UU U CAAGC...GUU-3'@LB@ AUGAGUG UUUGUUG UGGUUUUG GACGAUC UCUGUUUU UCCCCG@LB@ ||||:|| ||:|||| :::|:||| :||:||| :|::|:|: |||||:@LB@ UACUUAC AAGCAAC GUUAGAAC UUGUUAG GGGUAGAG AGGGGU@LB@3'-AUU...UUCAU CG CGU CAU AAUA AAAGA...CAA-5'@LB@ | |@LB@ 89 37@LB@@LB@@LB@Energy -14.36 kcal/mol@LB@Hybridization Energy -36.6264 kcal/mol@LB@Unfolding Energy - mRNA 9.40493 kcal/mol@LB@Unfolding Energy - sRNA 14.3562 kcal/mol@LB@@LB@Position - mRNA 231 -- 263@LB@Position - sRNA 38 -- 88@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 59 -- 65@LB@ |
115 |
0.005245 |
0.1741 |
bsu07690 |
yflG |
-14.30 |
0.046489 |
29 -- 56 |
32 -- 57 |
methionine aminopeptidase 2 |
|
_____________28___________________________57\n_____________|____________________________|\n5'-UUC...AAGCA________CCC__C__A____U______CAAAU...GCA-3'\n______________UACCCAUC___CU_AU_CCCU_UUUUUU\n______________||||||||___||_||_|||:_|||:||\n______________AUGGGUAG___GA_UA_GGGG_AAAGAA\n3'-AUU...UUAGC________A____A__A____U______ACUUU...CAA-5'\n_____________|____________________________|\n_____________58___________________________31\n |
30 -- 36 |
50 -- 56 |
-21.2542 kcal/mol |
0.575621 kcal/mol |
9.1585 kcal/mol |
28 57@LB@ | |@LB@5'-UUC...AAGCA CCC C A U CAAAU...GCA-3'@LB@ UACCCAUC CU AU CCCU UUUUUU@LB@ |||||||| || || |||: |||:||@LB@ AUGGGUAG GA UA GGGG AAAGAA@LB@3'-AUU...UUAGC A A A U ACUUU...CAA-5'@LB@ | |@LB@ 58 31@LB@@LB@@LB@Energy -14.30 kcal/mol@LB@Hybridization Energy -21.2542 kcal/mol@LB@Unfolding Energy - mRNA 0.575621 kcal/mol@LB@Unfolding Energy - sRNA 9.1585 kcal/mol@LB@@LB@Position - mRNA 29 -- 56@LB@Position - sRNA 32 -- 57@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 50 -- 56@LB@ |
116 |
0.005334 |
0.1741 |
bsu30510 |
ytpA |
-10.58 |
0.247824 |
123 -- 177 |
35 -- 87 |
phospholipase YtpA |
|
_____________122______________________________________________________178\n_____________|________________________________________________________|\n5'-AUU...AUAUC______G____C_UUAUAAG_______C__AAG___________CU__________AAAUU...GGC-3'\n______________UGGCUU_UGUU_C_______GGUAGAU_AU___AUUCAUC_CUU__UUCUCUAUUU\n______________||||||_:|||_|_______||:|:|:_||___|::||||_|||__|||:|:||||\n______________ACCGAA_GCAA_G_______CCGUUUG_UA___UGGGUAG_GAA__AAGGGGUAAA\n3'-AUU...UACUU___________C_UUAGAA________U__GCA_______A___U___________GAAAC...CAA-5'\n_____________|________________________________________________________|\n_____________88_______________________________________________________34\n |
171 -- 177 |
35 -- 41 |
-35.4104 kcal/mol |
13.324 kcal/mol |
14.1583 kcal/mol |
122 178@LB@ | |@LB@5'-AUU...AUAUC G C UUAUAAG C AAG CU AAAUU...GGC-3'@LB@ UGGCUU UGUU C GGUAGAU AU AUUCAUC CUU UUCUCUAUUU@LB@ |||||| :||| | ||:|:|: || |::|||| ||| |||:|:||||@LB@ ACCGAA GCAA G CCGUUUG UA UGGGUAG GAA AAGGGGUAAA@LB@3'-AUU...UACUU C UUAGAA U GCA A U GAAAC...CAA-5'@LB@ | |@LB@ 88 34@LB@@LB@@LB@Energy -10.58 kcal/mol@LB@Hybridization Energy -35.4104 kcal/mol@LB@Unfolding Energy - mRNA 13.324 kcal/mol@LB@Unfolding Energy - sRNA 14.1583 kcal/mol@LB@@LB@Position - mRNA 123 -- 177@LB@Position - sRNA 35 -- 87@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 35 -- 41@LB@ |
117 |
0.005342 |
0.1741 |
bsu33050 |
gerAA |
-9.34 |
0.402150 |
52 -- 63 |
38 -- 49 |
spore germination protein A1 |
|
_____________51___________64\n_____________|____________|\n5'-UAA...UUUCU____________GCUAG...UGC-3'\n______________UCUUGUUUUCCA\n______________||||:||::|||\n______________AGAAUAAGGGGU\n3'-AUU...GGUAG____________AAAGA...CAA-5'\n_____________|____________|\n_____________50___________37\n |
57 -- 63 |
38 -- 44 |
-12.8318 kcal/mol |
1.31908 kcal/mol |
4.13482 kcal/mol |
51 64@LB@ | |@LB@5'-UAA...UUUCU GCUAG...UGC-3'@LB@ UCUUGUUUUCCA@LB@ ||||:||::|||@LB@ AGAAUAAGGGGU@LB@3'-AUU...GGUAG AAAGA...CAA-5'@LB@ | |@LB@ 50 37@LB@@LB@@LB@Energy -9.34 kcal/mol@LB@Hybridization Energy -12.8318 kcal/mol@LB@Unfolding Energy - mRNA 1.31908 kcal/mol@LB@Unfolding Energy - sRNA 4.13482 kcal/mol@LB@@LB@Position - mRNA 52 -- 63@LB@Position - sRNA 38 -- 49@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 38 -- 44@LB@ |
118 |
0.005364 |
0.1741 |
bsu21980 |
ypdP |
-14.81 |
0.036422 |
190 -- 236 |
72 -- 112 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pm: membrane component' |
|
_____________189_______________________________________________237\n_____________|_________________________________________________|\n5'-AAC...AGGAA_____________GUUUAAUAAUUC__UU___________U________AUUCA...GGA-3'\n______________GCUUUUUCAUCUU____________GU__UGGAU__CUUU_UUGCGAUC\n______________:||||:|||||||____________||__||:||__|||:_||||:|||\n______________UGAAAGAGUAGAA____________CA__ACUUA__GAAG_AACGUUAG\n3'-AUU...AACAG_____________GUUU__________UU_____CC____C________AACCG...CAA-5'\n_____________|_________________________________________________|\n_____________113_______________________________________________71\n |
230 -- 236 |
72 -- 78 |
-29.9578 kcal/mol |
5.88063 kcal/mol |
12.3236 kcal/mol |
189 237@LB@ | |@LB@5'-AAC...AGGAA GUUUAAUAAUUC UU U AUUCA...GGA-3'@LB@ GCUUUUUCAUCUU GU UGGAU CUUU UUGCGAUC@LB@ :||||:||||||| || ||:|| |||: ||||:|||@LB@ UGAAAGAGUAGAA CA ACUUA GAAG AACGUUAG@LB@3'-AUU...AACAG GUUU UU CC C AACCG...CAA-5'@LB@ | |@LB@ 113 71@LB@@LB@@LB@Energy -14.81 kcal/mol@LB@Hybridization Energy -29.9578 kcal/mol@LB@Unfolding Energy - mRNA 5.88063 kcal/mol@LB@Unfolding Energy - sRNA 12.3236 kcal/mol@LB@@LB@Position - mRNA 190 -- 236@LB@Position - sRNA 72 -- 112@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 72 -- 78@LB@ |
119 |
0.005369 |
0.1741 |
bsu33250 |
yvrL |
-8.38 |
0.555183 |
10 -- 36 |
76 -- 105 |
membrane-bound negative regulator YvrL |
|
_____________9__________37\n_____________|__________|\n5'-AUG...CCUUC__________UUGCG...AUA-3'\n______________AAAACGCUUA\n______________||||||||||\n______________UUUUGCGAAU\n3'-AUU...UAAAC__________UAAAG...CAA-5'\n_____________|__________|\n_____________106________75\n |
224 -- 230 |
13 -- 19 |
-10.8458 kcal/mol |
2.09283 kcal/mol |
3.31287 kcal/mol |
9 37@LB@ | |@LB@5'-AUG...CCUUC UUGCG...AUA-3'@LB@ AAAACGCUUA@LB@ ||||||||||@LB@ UUUUGCGAAU@LB@3'-AUU...UAAAC UAAAG...CAA-5'@LB@ | |@LB@ 106 75@LB@@LB@@LB@Energy -8.38 kcal/mol@LB@Hybridization Energy -10.8458 kcal/mol@LB@Unfolding Energy - mRNA 2.09283 kcal/mol@LB@Unfolding Energy - sRNA 3.31287 kcal/mol@LB@@LB@Position - mRNA 10 -- 36@LB@Position - sRNA 76 -- 105@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 13 -- 19@LB@ |
120 |
0.005453 |
0.1741 |
bsu38750 |
cydB |
-16.17 |
0.018868 |
36 -- 121 |
37 -- 136 |
cytochrome d ubiquinol oxidase subunit 2 |
|
_____________35____________________________________________________________________________________________________________122\n_____________|_____________________________________________________________________________________________________________|\n5'-AAU...CGUAA___________________________C__AA_____GCA_____U______UAC___AU__________________________________U________A_____GAGAU...CCC-3'\n______________CAGCGGGUUCC________UUGUUAUU_UC__UCAUC___UUCGG_GUGAUG___AUG____________UCUUGGU__GCA__C_UGCUUGUC_UCUUGUUU_UCCGU\n______________||||::|||||________||||:|:|_||__|||||___|||::_||:|||___|||____________||||||:__:||__|_|:|:::||_||||:||:_:||:|\n______________GUCGUUCAAGG________AACAGUGA_AG__AGUAG___AAGUU_CAUUAC___UAC____________AGAACCG__UGU__G_AUGGGUAG_AGAAUAAG_GGGUA\n3'-AUU...CAGGC___________UAUAUUAC________A_________________U______U_____CGAAGCAACGUU_______UU___UA_C_______________________AAGAA...CAA-5'\n_____________|_____________________________________________________________________________________________________________|\n_____________137___________________________________________________________________________________________________________36\n |
109 -- 115 |
42 -- 48 |
-60.5971 kcal/mol |
23.6183 kcal/mol |
24.7809 kcal/mol |
35 122@LB@ | |@LB@5'-AAU...CGUAA C AA GCA U UAC AU U A GAGAU...CCC-3'@LB@ CAGCGGGUUCC UUGUUAUU UC UCAUC UUCGG GUGAUG AUG UCUUGGU GCA C UGCUUGUC UCUUGUUU UCCGU@LB@ ||||::||||| ||||:|:| || ||||| |||:: ||:||| ||| ||||||: :|| | |:|:::|| ||||:||: :||:|@LB@ GUCGUUCAAGG AACAGUGA AG AGUAG AAGUU CAUUAC UAC AGAACCG UGU G AUGGGUAG AGAAUAAG GGGUA@LB@3'-AUU...CAGGC UAUAUUAC A U U CGAAGCAACGUU UU UA C AAGAA...CAA-5'@LB@ | |@LB@ 137 36@LB@@LB@@LB@Energy -16.17 kcal/mol@LB@Hybridization Energy -60.5971 kcal/mol@LB@Unfolding Energy - mRNA 23.6183 kcal/mol@LB@Unfolding Energy - sRNA 24.7809 kcal/mol@LB@@LB@Position - mRNA 36 -- 121@LB@Position - sRNA 37 -- 136@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 42 -- 48@LB@ |
121 |
0.005491 |
0.1741 |
bsu40190 |
fbp |
-16.50 |
0.016068 |
67 -- 83 |
53 -- 69 |
fructose-1 6-bisphosphatase |
|
_____________66________________84\n_____________|_________________|\n5'-AAA...AAUGA___________U_____UAAAC...GCA-3'\n______________GGCAAACAAUC_UACCC\n______________|||||||||||_|||||\n______________CCGUUUGUUAG_AUGGG\n3'-AUU...UAGAA___________C_____UAGAG...CAA-5'\n_____________|_________________|\n_____________70________________52\n |
71 -- 77 |
59 -- 65 |
-25.6398 kcal/mol |
2.55798 kcal/mol |
7.79863 kcal/mol |
66 84@LB@ | |@LB@5'-AAA...AAUGA U UAAAC...GCA-3'@LB@ GGCAAACAAUC UACCC@LB@ ||||||||||| |||||@LB@ CCGUUUGUUAG AUGGG@LB@3'-AUU...UAGAA C UAGAG...CAA-5'@LB@ | |@LB@ 70 52@LB@@LB@@LB@Energy -16.50 kcal/mol@LB@Hybridization Energy -25.6398 kcal/mol@LB@Unfolding Energy - mRNA 2.55798 kcal/mol@LB@Unfolding Energy - sRNA 7.79863 kcal/mol@LB@@LB@Position - mRNA 67 -- 83@LB@Position - sRNA 53 -- 69@LB@Position Seed - mRNA 71 -- 77@LB@Position Seed - sRNA 59 -- 65@LB@ |
122 |
0.005613 |
0.1741 |
bsu19770 |
cgeC |
-14.56 |
0.041162 |
73 -- 119 |
6 -- 59 |
spore maturation protein CgeC |
|
_____________72_______________________________________________________120\n_____________|________________________________________________________|\n5'-CAC...AACGC_______G____AUUU___A_______AAG__________________________AAUGG...AAG-3'\n______________CGUACCU_AUCU____UUC_UCUAUUU___________GAAAAUGCU_GAUUUUUU\n______________||||||:_||||____|||_:|:||||___________|||||:|||_:||||:||\n______________GCAUGGG_UAGA____AAG_GGGUAAA___________CUUUUGCGA_UUAAAGAA\n3'-AUU...UGUUA____________GAAU___________GAAACUUUAAA_________A________AACAA-5'\n_____________|________________________________________________________|\n_____________60_______________________________________________________5\n |
105 -- 111 |
15 -- 21 |
-32.5895 kcal/mol |
8.55003 kcal/mol |
11.8347 kcal/mol |
72 120@LB@ | |@LB@5'-CAC...AACGC G AUUU A AAG AAUGG...AAG-3'@LB@ CGUACCU AUCU UUC UCUAUUU GAAAAUGCU GAUUUUUU@LB@ ||||||: |||| ||| :|:|||| |||||:||| :||||:||@LB@ GCAUGGG UAGA AAG GGGUAAA CUUUUGCGA UUAAAGAA@LB@3'-AUU...UGUUA GAAU GAAACUUUAAA A AACAA-5'@LB@ | |@LB@ 60 5@LB@@LB@@LB@Energy -14.56 kcal/mol@LB@Hybridization Energy -32.5895 kcal/mol@LB@Unfolding Energy - mRNA 8.55003 kcal/mol@LB@Unfolding Energy - sRNA 11.8347 kcal/mol@LB@@LB@Position - mRNA 73 -- 119@LB@Position - sRNA 6 -- 59@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 15 -- 21@LB@ |
123 |
0.005649 |
0.1741 |
bsu37530 |
ywhC |
-10.56 |
0.250674 |
18 -- 29 |
105 -- 116 |
zinc metalloprotease YwhC |
|
_____________17___________30\n_____________|____________|\n5'-GUU...GCUUC____________GACAA...UCG-3'\n______________UGUUACUUUCUC\n______________|||:||||||||\n______________ACAGUGAAAGAG\n3'-AUU...UUACA____________UAGAA...CAA-5'\n_____________|____________|\n_____________117__________104\n |
23 -- 29 |
105 -- 111 |
-16.5612 kcal/mol |
1.98074 kcal/mol |
5.11978 kcal/mol |
17 30@LB@ | |@LB@5'-GUU...GCUUC GACAA...UCG-3'@LB@ UGUUACUUUCUC@LB@ |||:||||||||@LB@ ACAGUGAAAGAG@LB@3'-AUU...UUACA UAGAA...CAA-5'@LB@ | |@LB@ 117 104@LB@@LB@@LB@Energy -10.56 kcal/mol@LB@Hybridization Energy -16.5612 kcal/mol@LB@Unfolding Energy - mRNA 1.98074 kcal/mol@LB@Unfolding Energy - sRNA 5.11978 kcal/mol@LB@@LB@Position - mRNA 18 -- 29@LB@Position - sRNA 105 -- 116@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 105 -- 111@LB@ |
124 |
0.005654 |
0.1741 |
bsu24680 |
comGF |
-17.71 |
0.008856 |
105 -- 249 |
40 -- 187 |
ComG operon protein 6 |
|
_____________104_____________________________________250\n_____________|_______________________________________|\n5'-UGU...UUUUG______A_______A_________GUU__A_A_______AAUGG...UAG-3'\n______________UC_UCG_CAGCAGG_ACA_UGACG___UC_C_CAGCAGG\n______________||_||:_||:||||_|||_||||:___||_|_|||||:|\n______________AG_AGU_GUUGUCC_UGU_ACUGU___AG_G_GUCGUUC\n3'-AUU...AAAUG__A___A___________A_____AAC____C_______AAGGU...CAA-5'\n_____________|_______________________________________|\n_____________188_____________________________________39\n |
276 -- 282 |
130 -- 136 |
-32.8645 kcal/mol |
8.22307 kcal/mol |
10.1234 kcal/mol |
104 250@LB@ | |@LB@5'-UGU...UUUUG A A GUU A A AAUGG...UAG-3'@LB@ UC UCG CAGCAGG ACA UGACG UC C CAGCAGG@LB@ || ||: ||:|||| ||| ||||: || | |||||:|@LB@ AG AGU GUUGUCC UGU ACUGU AG G GUCGUUC@LB@3'-AUU...AAAUG A A A AAC C AAGGU...CAA-5'@LB@ | |@LB@ 188 39@LB@@LB@@LB@Energy -17.71 kcal/mol@LB@Hybridization Energy -32.8645 kcal/mol@LB@Unfolding Energy - mRNA 8.22307 kcal/mol@LB@Unfolding Energy - sRNA 10.1234 kcal/mol@LB@@LB@Position - mRNA 105 -- 249@LB@Position - sRNA 40 -- 187@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 130 -- 136@LB@ |
125 |
0.005817 |
0.1741 |
bsu26980 |
yraE |
-11.00 |
0.208718 |
35 -- 90 |
112 -- 185 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________34________________________________________________________91\n_____________|_________________________________________________________|\n5'-UAC...UUUGA___AG______________AA_______A____GGA_____________________AGCCA...CUG-3'\n______________ACU___UAUCGACAGG_CA_____AUUG_UCCG_______________GAUGUUGUC\n______________|||___:|||:|||||_||_____||||_||||_______________:||||||||\n______________UGA___GUAGUUGUCC_GU_____UAAC_AGGC_______________UUACAACAG\n3'-AUU...AAAAA___GAA__________U__AACUG_________GUCGUUCAAGGUAUA_________UGAAA...CAA-5'\n_____________|_________________________________________________________|\n_____________186_______________________________________________________111\n |
83 -- 89 |
113 -- 119 |
-30.5681 kcal/mol |
8.54797 kcal/mol |
10.8348 kcal/mol |
34 91@LB@ | |@LB@5'-UAC...UUUGA AG AA A GGA AGCCA...CUG-3'@LB@ ACU UAUCGACAGG CA AUUG UCCG GAUGUUGUC@LB@ ||| :|||:||||| || |||| |||| :||||||||@LB@ UGA GUAGUUGUCC GU UAAC AGGC UUACAACAG@LB@3'-AUU...AAAAA GAA U AACUG GUCGUUCAAGGUAUA UGAAA...CAA-5'@LB@ | |@LB@ 186 111@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -30.5681 kcal/mol@LB@Unfolding Energy - mRNA 8.54797 kcal/mol@LB@Unfolding Energy - sRNA 10.8348 kcal/mol@LB@@LB@Position - mRNA 35 -- 90@LB@Position - sRNA 112 -- 185@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 113 -- 119@LB@ |
126 |
0.005872 |
0.1741 |
bsu36510 |
amtB |
-10.53 |
0.253946 |
51 -- 89 |
33 -- 57 |
ammonium transporter NrgA |
|
_____________50_____________________________________________________________________________________90\n_____________|______________________________________________________________________________________|\n______5'-CUCAU______A_____UUUUAUAGAUACAA______AUAUC____AAAA____AU____C_______UUCCAUCCCUCGAUAA_______CAAAA...GCA-3'\n______________AUGAAU_GUUUC______________AGUCUU_____GCAA____UGCC__UCUC___UUCCU________________CAUUUCU\n______________||||||_|:|||______________|:||||_____:|||____|:||__||||___||||:________________|||||||\n______________UACUUA_CGAAG______________UUAGAA_____UGUU____AUGG__AGAG___AAGGG________________GUAAAGA\n3'-AUU...UUCAU______C_____CAACG_______________CCGUU____AGC_____GU____AAU____________________________AACUU...CAA-5'\n_____________|______________________________________________________________________________________|\n_____________58_____________________________________________________________________________________32\n |
83 -- 89 |
33 -- 39 |
-30.7855 kcal/mol |
7.29289 kcal/mol |
15.7787 kcal/mol |
50 90@LB@ | |@LB@ 5'-CUCAU A UUUUAUAGAUACAA AUAUC AAAA AU C UUCCAUCCCUCGAUAA CAAAA...GCA-3'@LB@ AUGAAU GUUUC AGUCUU GCAA UGCC UCUC UUCCU CAUUUCU@LB@ |||||| |:||| |:|||| :||| |:|| |||| ||||: |||||||@LB@ UACUUA CGAAG UUAGAA UGUU AUGG AGAG AAGGG GUAAAGA@LB@3'-AUU...UUCAU C CAACG CCGUU AGC GU AAU AACUU...CAA-5'@LB@ | |@LB@ 58 32@LB@@LB@@LB@Energy -10.53 kcal/mol@LB@Hybridization Energy -30.7855 kcal/mol@LB@Unfolding Energy - mRNA 7.29289 kcal/mol@LB@Unfolding Energy - sRNA 15.7787 kcal/mol@LB@@LB@Position - mRNA 51 -- 89@LB@Position - sRNA 33 -- 57@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 33 -- 39@LB@ |
127 |
0.005895 |
0.1741 |
bsu15640 |
yloA |
-14.75 |
0.037563 |
39 -- 86 |
36 -- 83 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 11238985 17586671; Product type pf: factor' |
|
_____________38__________________________________________________87\n_____________|___________________________________________________|\n5'-UUA...ACGUA__G_____C____A_______CUGU_____________AUGAAA_______CCGCU...AUA-3'\n______________UU_GUUGC__UCU__GUAAAU____UUGU_CCCAUUUC______CUUCAUU\n______________||_|||||__|||__|:|||:____|:||_|||||:||______|::||||\n______________AA_CAACG__AGA__CGUUUG____AGCA_GGGUAGAG______GGGGUAA\n3'-AUU...UACCG__G_____UU___AC______UU______U________AAUAA________AGAAA...CAA-5'\n_____________|___________________________________________________|\n_____________84__________________________________________________35\n |
80 -- 86 |
36 -- 42 |
-30.597 kcal/mol |
5.41607 kcal/mol |
13.7079 kcal/mol |
38 87@LB@ | |@LB@5'-UUA...ACGUA G C A CUGU AUGAAA CCGCU...AUA-3'@LB@ UU GUUGC UCU GUAAAU UUGU CCCAUUUC CUUCAUU@LB@ || ||||| ||| |:|||: |:|| |||||:|| |::||||@LB@ AA CAACG AGA CGUUUG AGCA GGGUAGAG GGGGUAA@LB@3'-AUU...UACCG G UU AC UU U AAUAA AGAAA...CAA-5'@LB@ | |@LB@ 84 35@LB@@LB@@LB@Energy -14.75 kcal/mol@LB@Hybridization Energy -30.597 kcal/mol@LB@Unfolding Energy - mRNA 5.41607 kcal/mol@LB@Unfolding Energy - sRNA 13.7079 kcal/mol@LB@@LB@Position - mRNA 39 -- 86@LB@Position - sRNA 36 -- 83@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 36 -- 42@LB@ |
128 |
0.005903 |
0.1741 |
bsu24110 |
yqzF |
-12.53 |
0.106013 |
93 -- 138 |
39 -- 81 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________92_______________________________________________139\n_____________|________________________________________________|\n5'-UAA...UAUUC_________AAUUU___C___CCUA___UA___CGUUUUCU_______ACAAA...UCA-3'\n______________CGUUGCAAU_____GCA_AAC____UGU__CCA________UCUCUUG\n______________|||||||||_____|||_|||____:||__|||________||||||:\n______________GCAACGUUA_____CGU_UUG____GCA__GGU________AGAGAAU\n3'-AUU...CCGAA_________GAAC________UUA____UG__________________AAGGG...CAA-5'\n_____________|________________________________________________|\n_____________82_______________________________________________38\n |
134 -- 140 |
45 -- 51 |
-26.5343 kcal/mol |
8.17713 kcal/mol |
8.56905 kcal/mol |
92 139@LB@ | |@LB@5'-UAA...UAUUC AAUUU C CCUA UA CGUUUUCU ACAAA...UCA-3'@LB@ CGUUGCAAU GCA AAC UGU CCA UCUCUUG@LB@ ||||||||| ||| ||| :|| ||| ||||||:@LB@ GCAACGUUA CGU UUG GCA GGU AGAGAAU@LB@3'-AUU...CCGAA GAAC UUA UG AAGGG...CAA-5'@LB@ | |@LB@ 82 38@LB@@LB@@LB@Energy -12.53 kcal/mol@LB@Hybridization Energy -26.5343 kcal/mol@LB@Unfolding Energy - mRNA 8.17713 kcal/mol@LB@Unfolding Energy - sRNA 8.56905 kcal/mol@LB@@LB@Position - mRNA 93 -- 138@LB@Position - sRNA 39 -- 81@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 45 -- 51@LB@ |
129 |
0.005948 |
0.1741 |
bsu13580 |
ykrV |
-12.37 |
0.114104 |
93 -- 132 |
31 -- 61 |
transaminase MtnE |
|
_____________92________________________________________133\n_____________|_________________________________________|\n5'-CAG...AAGAU________AUUU________UAACA_____AAUU_______ACUUU...ACG-3'\n______________AUCGU_CC____CAUCUUUU_____CCCCA____UUUCUUU\n______________|||||_||____|||||:||_____|||||____|||||||\n______________UAGCA_GG____GUAGAGAA_____GGGGU____AAAGAAA\n3'-AUU...UUUGU_____U______________UAA__________________CUUUA...CAA-5'\n_____________|_________________________________________|\n_____________62________________________________________30\n |
126 -- 132 |
31 -- 37 |
-24.5638 kcal/mol |
3.82436 kcal/mol |
10.4555 kcal/mol |
92 133@LB@ | |@LB@5'-CAG...AAGAU AUUU UAACA AAUU ACUUU...ACG-3'@LB@ AUCGU CC CAUCUUUU CCCCA UUUCUUU@LB@ ||||| || |||||:|| ||||| |||||||@LB@ UAGCA GG GUAGAGAA GGGGU AAAGAAA@LB@3'-AUU...UUUGU U UAA CUUUA...CAA-5'@LB@ | |@LB@ 62 30@LB@@LB@@LB@Energy -12.37 kcal/mol@LB@Hybridization Energy -24.5638 kcal/mol@LB@Unfolding Energy - mRNA 3.82436 kcal/mol@LB@Unfolding Energy - sRNA 10.4555 kcal/mol@LB@@LB@Position - mRNA 93 -- 132@LB@Position - sRNA 31 -- 61@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 31 -- 37@LB@ |
130 |
0.005995 |
0.1741 |
bsu19660 |
yozD |
-10.24 |
0.285413 |
18 -- 51 |
105 -- 135 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________17_________________________________52\n_____________|__________________________________|\n5'-CAC...CUUUG____UUUU_____U______AUCAAAU_______CGUCC...UGU-3'\n______________AGCG____UUCCA_UAUGAU_______CUUUCUC\n______________|||:____|||||_|||:||_______|||||||\n______________UCGU____AAGGU_AUAUUA_______GAAAGAG\n3'-AUU...AGGCG____UC______________CAACAGU_______UAGAA...CAA-5'\n_____________|__________________________________|\n_____________136________________________________104\n |
45 -- 51 |
105 -- 111 |
-19.2876 kcal/mol |
2.67508 kcal/mol |
6.61557 kcal/mol |
17 52@LB@ | |@LB@5'-CAC...CUUUG UUUU U AUCAAAU CGUCC...UGU-3'@LB@ AGCG UUCCA UAUGAU CUUUCUC@LB@ |||: ||||| |||:|| |||||||@LB@ UCGU AAGGU AUAUUA GAAAGAG@LB@3'-AUU...AGGCG UC CAACAGU UAGAA...CAA-5'@LB@ | |@LB@ 136 104@LB@@LB@@LB@Energy -10.24 kcal/mol@LB@Hybridization Energy -19.2876 kcal/mol@LB@Unfolding Energy - mRNA 2.67508 kcal/mol@LB@Unfolding Energy - sRNA 6.61557 kcal/mol@LB@@LB@Position - mRNA 18 -- 51@LB@Position - sRNA 105 -- 135@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 105 -- 111@LB@ |
131 |
0.006003 |
0.1741 |
bsu37510 |
pbpG |
-10.90 |
0.216982 |
70 -- 106 |
84 -- 108 |
penicillin-binding protein 2D |
|
_____________69____________________________________107\n_____________|_____________________________________|\n5'-UGU...UGAAA___________CCUAAGGAAA_____UAGA_______GGGGA...UGU-3'\n______________UCUCAUUUUCA__________AAGUA____GGAUGGC\n______________||||||:||||__________|||||____|:|||||\n______________AGAGUAGAAGU__________UUCAU____CUUACCG\n3'-AUU...GUGAA__________________________UA_________AAGCA...CAA-5'\n_____________|_____________________________________|\n_____________109___________________________________83\n |
100 -- 106 |
84 -- 90 |
-24.2284 kcal/mol |
7.40636 kcal/mol |
9.09036 kcal/mol |
69 107@LB@ | |@LB@5'-UGU...UGAAA CCUAAGGAAA UAGA GGGGA...UGU-3'@LB@ UCUCAUUUUCA AAGUA GGAUGGC@LB@ ||||||:|||| ||||| |:|||||@LB@ AGAGUAGAAGU UUCAU CUUACCG@LB@3'-AUU...GUGAA UA AAGCA...CAA-5'@LB@ | |@LB@ 109 83@LB@@LB@@LB@Energy -10.90 kcal/mol@LB@Hybridization Energy -24.2284 kcal/mol@LB@Unfolding Energy - mRNA 7.40636 kcal/mol@LB@Unfolding Energy - sRNA 9.09036 kcal/mol@LB@@LB@Position - mRNA 70 -- 106@LB@Position - sRNA 84 -- 108@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 84 -- 90@LB@ |
132 |
0.006133 |
0.1741 |
bsu24800 |
yqgW |
-15.55 |
0.025469 |
1 -- 63 |
31 -- 85 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
______________1_________________________________________________________________64\n______________|_________________________________________________________________|\n___________5'-__G____C_____________CCUACU____U____C________ACUA____CA___C_______UUUAU...CCG-3'\n______________GC_UUCG_UUG_AAUC__GGC______GGCA_UCGU_UCCAUUUC____UUAU__CCU_UUUCUUU\n______________||_||||_|||_||||__|||______::||_||||_:||||:||____||||__||:_|||||||\n______________CG_AAGC_AAC_UUAG__CCG______UUGU_AGCA_GGGUAGAG____AAUA__GGG_AAAGAAA\n3'-AUU...CUUAC___________G____AA___U_________U____U________________AG___U_______CUUUA...CAA-5'\n_____________|__________________________________________________________________|\n_____________86_________________________________________________________________30\n |
36 -- 42 |
48 -- 54 |
-38.6272 kcal/mol |
10.4973 kcal/mol |
14.833 kcal/mol |
1 64@LB@ | |@LB@ 5'- G C CCUACU U C ACUA CA C UUUAU...CCG-3'@LB@ GC UUCG UUG AAUC GGC GGCA UCGU UCCAUUUC UUAU CCU UUUCUUU@LB@ || |||| ||| |||| ||| ::|| |||| :||||:|| |||| ||: |||||||@LB@ CG AAGC AAC UUAG CCG UUGU AGCA GGGUAGAG AAUA GGG AAAGAAA@LB@3'-AUU...CUUAC G AA U U U AG U CUUUA...CAA-5'@LB@ | |@LB@ 86 30@LB@@LB@@LB@Energy -15.55 kcal/mol@LB@Hybridization Energy -38.6272 kcal/mol@LB@Unfolding Energy - mRNA 10.4973 kcal/mol@LB@Unfolding Energy - sRNA 14.833 kcal/mol@LB@@LB@Position - mRNA 1 -- 63@LB@Position - sRNA 31 -- 85@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 48 -- 54@LB@ |
133 |
0.006226 |
0.1741 |
bsu14430 |
ykpA |
-10.78 |
0.228396 |
48 -- 105 |
75 -- 129 |
ABC transporter ATP-binding protein |
|
_____________47____________106\n_____________|_____________|\n5'-GUA...AAGUU_____________AAUAU...UUG-3'\n______________AUUUGAAGAUGUU\n______________|||||||:|:|:|\n______________UAAACUUUUGCGA\n3'-AUU...AACUU_____________AUUAA...CAA-5'\n_____________|_____________|\n_____________130___________74\n |
254 -- 260 |
15 -- 21 |
-11.9489 kcal/mol |
0.844332 kcal/mol |
3.96844 kcal/mol |
47 106@LB@ | |@LB@5'-GUA...AAGUU AAUAU...UUG-3'@LB@ AUUUGAAGAUGUU@LB@ |||||||:|:|:|@LB@ UAAACUUUUGCGA@LB@3'-AUU...AACUU AUUAA...CAA-5'@LB@ | |@LB@ 130 74@LB@@LB@@LB@Energy -10.78 kcal/mol@LB@Hybridization Energy -11.9489 kcal/mol@LB@Unfolding Energy - mRNA 0.844332 kcal/mol@LB@Unfolding Energy - sRNA 3.96844 kcal/mol@LB@@LB@Position - mRNA 48 -- 105@LB@Position - sRNA 75 -- 129@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 15 -- 21@LB@ |
134 |
0.00626 |
0.1741 |
bsu03360 |
yciC |
-8.59 |
0.518951 |
99 -- 108 |
130 -- 139 |
metal chaperone YciC |
|
_____________98_______109\n_____________|________|\n5'-AGG...GGGCG________AAAUG...UAG-3'\n______________GCAGCGAG\n______________|||||:||\n______________CGUCGUUC\n3'-AUU...ACAGG________AAGGU...CAA-5'\n_____________|________|\n_____________140______129\n |
102 -- 108 |
130 -- 136 |
-12.856 kcal/mol |
2.76877 kcal/mol |
2.9981 kcal/mol |
98 109@LB@ | |@LB@5'-AGG...GGGCG AAAUG...UAG-3'@LB@ GCAGCGAG@LB@ |||||:||@LB@ CGUCGUUC@LB@3'-AUU...ACAGG AAGGU...CAA-5'@LB@ | |@LB@ 140 129@LB@@LB@@LB@Energy -8.59 kcal/mol@LB@Hybridization Energy -12.856 kcal/mol@LB@Unfolding Energy - mRNA 2.76877 kcal/mol@LB@Unfolding Energy - sRNA 2.9981 kcal/mol@LB@@LB@Position - mRNA 99 -- 108@LB@Position - sRNA 130 -- 139@LB@Position Seed - mRNA 102 -- 108@LB@Position Seed - sRNA 130 -- 136@LB@ |
135 |
0.00631 |
0.1741 |
bsu31510 |
yufK |
-14.38 |
0.044651 |
233 -- 280 |
42 -- 85 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pm: membrane component' |
|
_____________232________________________________________________281\n_____________|__________________________________________________|\n5'-UGC...UUUCC___GA_________CU___UUUU___U____CCUU_________AAC___ACUUU...UGC-3'\n______________GCU___UUGCGAUC___GC____UAG_UCGU____AUCCAUCUC___UUC\n______________|||___||||:|||___||____:|:_||||____|:|||||||___|||\n______________CGA___AACGUUAG___CG____GUU_AGCA____UGGGUAGAG___AAG\n3'-AUU...CUUAC___AGC________AAC__UUU______________________AAU___GGGUA...CAA-5'\n_____________|__________________________________________________|\n_____________86_________________________________________________41\n |
268 -- 274 |
48 -- 54 |
-29.5205 kcal/mol |
6.02241 kcal/mol |
9.1918 kcal/mol |
232 281@LB@ | |@LB@5'-UGC...UUUCC GA CU UUUU U CCUU AAC ACUUU...UGC-3'@LB@ GCU UUGCGAUC GC UAG UCGU AUCCAUCUC UUC@LB@ ||| ||||:||| || :|: |||| |:||||||| |||@LB@ CGA AACGUUAG CG GUU AGCA UGGGUAGAG AAG@LB@3'-AUU...CUUAC AGC AAC UUU AAU GGGUA...CAA-5'@LB@ | |@LB@ 86 41@LB@@LB@@LB@Energy -14.38 kcal/mol@LB@Hybridization Energy -29.5205 kcal/mol@LB@Unfolding Energy - mRNA 6.02241 kcal/mol@LB@Unfolding Energy - sRNA 9.1918 kcal/mol@LB@@LB@Position - mRNA 233 -- 280@LB@Position - sRNA 42 -- 85@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 48 -- 54@LB@ |
136 |
0.006329 |
0.1741 |
bsu10210 |
yhfF |
-9.29 |
0.409483 |
117 -- 143 |
37 -- 59 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________116______________144\n_____________|________________|\n5'-AUA...GACGC_______GCA______CGCAC...CCA-3'\n______________UUCCCAU___UUUGAA\n______________|:|||||___||||||\n______________AGGGGUA___AAACUU\n3'-AUU...GAAUA_______AAG______UAAAC...CAA-5'\n_____________|________________|\n_____________60_______________36\n |
101 -- 107 |
37 -- 43 |
-14.7282 kcal/mol |
3.20386 kcal/mol |
5.02573 kcal/mol |
116 144@LB@ | |@LB@5'-AUA...GACGC GCA CGCAC...CCA-3'@LB@ UUCCCAU UUUGAA@LB@ |:||||| ||||||@LB@ AGGGGUA AAACUU@LB@3'-AUU...GAAUA AAG UAAAC...CAA-5'@LB@ | |@LB@ 60 36@LB@@LB@@LB@Energy -9.29 kcal/mol@LB@Hybridization Energy -14.7282 kcal/mol@LB@Unfolding Energy - mRNA 3.20386 kcal/mol@LB@Unfolding Energy - sRNA 5.02573 kcal/mol@LB@@LB@Position - mRNA 117 -- 143@LB@Position - sRNA 37 -- 59@LB@Position Seed - mRNA 101 -- 107@LB@Position Seed - sRNA 37 -- 43@LB@ |
137 |
0.006339 |
0.1741 |
bsu39320 |
yxiB |
-11.20 |
0.191268 |
188 -- 222 |
111 -- 147 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________187_________________________223\n_____________|___________________________|\n5'-UAA...GUGUU______UGCAUA___A___________AUUCG...AAA-3'\n______________GCGGCA______GUG_AAUGUUGUUAC\n______________||:|||______:|:_||||||||:||\n______________CGUCGU______UAU_UUACAACAGUG\n3'-AUU...ACAGG______UCAAGG___A___________AAAGA...CAA-5'\n_____________|___________________________|\n_____________148_________________________110\n |
216 -- 222 |
111 -- 117 |
-23.3412 kcal/mol |
7.76229 kcal/mol |
5.28835 kcal/mol |
187 223@LB@ | |@LB@5'-UAA...GUGUU UGCAUA A AUUCG...AAA-3'@LB@ GCGGCA GUG AAUGUUGUUAC@LB@ ||:||| :|: ||||||||:||@LB@ CGUCGU UAU UUACAACAGUG@LB@3'-AUU...ACAGG UCAAGG A AAAGA...CAA-5'@LB@ | |@LB@ 148 110@LB@@LB@@LB@Energy -11.20 kcal/mol@LB@Hybridization Energy -23.3412 kcal/mol@LB@Unfolding Energy - mRNA 7.76229 kcal/mol@LB@Unfolding Energy - sRNA 5.28835 kcal/mol@LB@@LB@Position - mRNA 188 -- 222@LB@Position - sRNA 111 -- 147@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 111 -- 117@LB@ |
138 |
0.00639 |
0.1741 |
bsu24900 |
rpmG |
-18.16 |
0.007101 |
92 -- 175 |
92 -- 166 |
50S ribosomal protein L33 |
|
_____________91_________________________________________________________176\n_____________|__________________________________________________________|\n5'-CGC...GCGUA______AUAAU______AUU______AAAACAG________UUCCG____U_______GUAUU...AAA-3'\n______________UCUUCA_____UCAGCA___CAUUGA_______CC_UAGCA_____UCCA_UAUAGUG\n______________||||||_____|||:||___||||||_______||_:||||_____||||_||||:||\n______________AGAAGU_____AGUUGU___GUAACU_______GG_GUCGU_____AGGU_AUAUUAC\n3'-AUU...AAAUG_________________CCU______GUAACA___C_____UCA______________AACAG...CAA-5'\n_____________|__________________________________________________________|\n_____________167________________________________________________________91\n |
142 -- 148 |
118 -- 124 |
-35.8515 kcal/mol |
8.17901 kcal/mol |
10.6225 kcal/mol |
91 176@LB@ | |@LB@5'-CGC...GCGUA AUAAU AUU AAAACAG UUCCG U GUAUU...AAA-3'@LB@ UCUUCA UCAGCA CAUUGA CC UAGCA UCCA UAUAGUG@LB@ |||||| |||:|| |||||| || :|||| |||| ||||:||@LB@ AGAAGU AGUUGU GUAACU GG GUCGU AGGU AUAUUAC@LB@3'-AUU...AAAUG CCU GUAACA C UCA AACAG...CAA-5'@LB@ | |@LB@ 167 91@LB@@LB@@LB@Energy -18.16 kcal/mol@LB@Hybridization Energy -35.8515 kcal/mol@LB@Unfolding Energy - mRNA 8.17901 kcal/mol@LB@Unfolding Energy - sRNA 10.6225 kcal/mol@LB@@LB@Position - mRNA 92 -- 175@LB@Position - sRNA 92 -- 166@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 118 -- 124@LB@ |
139 |
0.006395 |
0.1741 |
bsu30170 |
ytcP |
-13.74 |
0.060669 |
6 -- 28 |
1 -- 23 |
ABC transporter permease |
|
_____________5_______________________29\n_____________|_______________________|\n______5'-UCUAA__UU_____CUU___________AUCGG...UUG-3'\n______________GA__AUGCU___UUUCUUUUGUU\n______________||__|:|||___|||||||||||\n______________CU__UGCGA___AAAGAAAACAA\n3'-AUU...UUAAA__UU_____AUU___________-5'\n_____________|______________________|\n_____________24_____________________1\n |
22 -- 28 |
1 -- 7 |
-18.7227 kcal/mol |
2.34195 kcal/mol |
4.12892 kcal/mol |
5 29@LB@ | |@LB@ 5'-UCUAA UU CUU AUCGG...UUG-3'@LB@ GA AUGCU UUUCUUUUGUU@LB@ || |:||| |||||||||||@LB@ CU UGCGA AAAGAAAACAA@LB@3'-AUU...UUAAA UU AUU -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -13.74 kcal/mol@LB@Hybridization Energy -18.7227 kcal/mol@LB@Unfolding Energy - mRNA 2.34195 kcal/mol@LB@Unfolding Energy - sRNA 4.12892 kcal/mol@LB@@LB@Position - mRNA 6 -- 28@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 1 -- 7@LB@ |
140 |
0.006451 |
0.1741 |
bsu29090 |
polA |
-11.51 |
0.167440 |
58 -- 84 |
30 -- 56 |
DNA polymerase I |
|
_____________57________________85\n_____________|_________________|\n5'-AUG...CGGGA________G________GUCCU...AUA-3'\n______________ACCUAUUU__UGUUCCC\n______________|||:||:|__|:|||||\n______________UGGGUAGA__AUAAGGG\n3'-AUU...UAGCA________GA_______GUAAA...CAA-5'\n_____________|_________________|\n_____________57________________29\n |
67 -- 73 |
40 -- 46 |
-17.5976 kcal/mol |
2.41953 kcal/mol |
7.22212 kcal/mol |
57 85@LB@ | |@LB@5'-AUG...CGGGA G GUCCU...AUA-3'@LB@ ACCUAUUU UGUUCCC@LB@ |||:||:| |:|||||@LB@ UGGGUAGA AUAAGGG@LB@3'-AUU...UAGCA GA GUAAA...CAA-5'@LB@ | |@LB@ 57 29@LB@@LB@@LB@Energy -11.51 kcal/mol@LB@Hybridization Energy -17.5976 kcal/mol@LB@Unfolding Energy - mRNA 2.41953 kcal/mol@LB@Unfolding Energy - sRNA 7.22212 kcal/mol@LB@@LB@Position - mRNA 58 -- 84@LB@Position - sRNA 30 -- 56@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 40 -- 46@LB@ |
141 |
0.006569 |
0.1741 |
bsu19520 |
yojA |
-12.26 |
0.119762 |
158 -- 180 |
120 -- 146 |
permease YojA |
bsu40070 |
_____________157_________________________________________________________181\n_____________|___________________________________________________________|\n5'-GGU...GCUUU__G________________GAAAAGCGCCAAA_________________AA________AACAC...UUU-3'\n______________CU_UUCAUC__UAGG_CAU_____________ACAUUGUC____GCGAG__UCAUAUAA\n______________||_||||||__:|||_|||_____________||||||||____||:||__:|||||||\n______________GA_AAGUAG__GUCC_GUA_____________UGUAACAG____CGUUC__GGUAUAUU\n3'-AUU...AAAAU__G______UU____U___AC___________________GCGU_____AA________ACAAC...CAA-5'\n_____________|___________________________________________________________|\n_____________147_________________________________________________________119\n |
174 -- 180 |
120 -- 126 |
-32.1826 kcal/mol |
10.1468 kcal/mol |
10.5645 kcal/mol |
157 181@LB@ | |@LB@5'-GGU...GCUUU G GAAAAGCGCCAAA AA AACAC...UUU-3'@LB@ CU UUCAUC UAGG CAU ACAUUGUC GCGAG UCAUAUAA@LB@ || |||||| :||| ||| |||||||| ||:|| :|||||||@LB@ GA AAGUAG GUCC GUA UGUAACAG CGUUC GGUAUAUU@LB@3'-AUU...AAAAU G UU U AC GCGU AA ACAAC...CAA-5'@LB@ | |@LB@ 147 119@LB@@LB@@LB@Energy -12.26 kcal/mol@LB@Hybridization Energy -32.1826 kcal/mol@LB@Unfolding Energy - mRNA 10.1468 kcal/mol@LB@Unfolding Energy - sRNA 10.5645 kcal/mol@LB@@LB@Position - mRNA 158 -- 180@LB@Position - sRNA 120 -- 146@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 120 -- 126@LB@ |
142 |
0.006636 |
0.1741 |
bsu22510 |
ypjC |
-12.74 |
0.096342 |
122 -- 155 |
156 -- 190 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pm: membrane component' |
|
_____________121_____________________________________________________________________________156\n_____________|_______________________________________________________________________________|\n5'-UAA...UCAUC_____A___GUUAGCUAAUU___AU___U______AA_____A_____C_____________C____UU__________CACUA...UGG-3'\n______________CUCUU_CAU___________CAG__ACG_UUGACA__UGUUU__AGCA_GUU________UG_UGUU__CUUUUUCAUC\n______________|||||_|||___________|||__||:_||||||__|||::__||||_|||________||_|||:__||||:|||||\n______________GAGAA_GUA___________GUC__UGU_AACUGU__ACAGG__UCGU_CAA________AC_ACAG__GAAAGAGUAG\n3'-AUU...AAAAU_________GUU___________C___________A______CG____U___GGUAUAUU__A____U___________AAGUU...CAA-5'\n_____________|_______________________________________________________________________________|\n_____________191_____________________________________________________________________________155\n |
146 -- 152 |
102 -- 108 |
-35.2093 kcal/mol |
10.3676 kcal/mol |
14.8184 kcal/mol |
121 156@LB@ | |@LB@5'-UAA...UCAUC A GUUAGCUAAUU AU U AA A C C UU CACUA...UGG-3'@LB@ CUCUU CAU CAG ACG UUGACA UGUUU AGCA GUU UG UGUU CUUUUUCAUC@LB@ ||||| ||| ||| ||: |||||| |||:: |||| ||| || |||: ||||:|||||@LB@ GAGAA GUA GUC UGU AACUGU ACAGG UCGU CAA AC ACAG GAAAGAGUAG@LB@3'-AUU...AAAAU GUU C A CG U GGUAUAUU A U AAGUU...CAA-5'@LB@ | |@LB@ 191 155@LB@@LB@@LB@Energy -12.74 kcal/mol@LB@Hybridization Energy -35.2093 kcal/mol@LB@Unfolding Energy - mRNA 10.3676 kcal/mol@LB@Unfolding Energy - sRNA 14.8184 kcal/mol@LB@@LB@Position - mRNA 122 -- 155@LB@Position - sRNA 156 -- 190@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 102 -- 108@LB@ |
143 |
0.006663 |
0.1741 |
bsu05790 |
ydhK |
-18.88 |
0.004963 |
179 -- 222 |
125 -- 163 |
Evidence 5: No homology to any previously reported sequences |
|
_____________178__________________________________________223\n_____________|____________________________________________|\n5'-GUG...UAGUA_______G_______GUUUU____________G__AA___UA__GGAAA...UUU-3'\n______________UUAUCGA_AGGGCAU_____CAUUGUCUGCGG_CA__AGU__CA\n______________|:|||:|_|||:|||_____|||||||:||:|_||__|||__||\n______________AGUAGUU_UCCUGUA_____GUAACAGGCGUC_GU__UCA__GU\n3'-AUU...UGAGA_______G_______ACU______________________AG__AUAUU...CAA-5'\n_____________|____________________________________________|\n_____________164__________________________________________124\n |
204 -- 210 |
134 -- 140 |
-40.9125 kcal/mol |
11.6904 kcal/mol |
10.3584 kcal/mol |
178 223@LB@ | |@LB@5'-GUG...UAGUA G GUUUU G AA UA GGAAA...UUU-3'@LB@ UUAUCGA AGGGCAU CAUUGUCUGCGG CA AGU CA@LB@ |:|||:| |||:||| |||||||:||:| || ||| ||@LB@ AGUAGUU UCCUGUA GUAACAGGCGUC GU UCA GU@LB@3'-AUU...UGAGA G ACU AG AUAUU...CAA-5'@LB@ | |@LB@ 164 124@LB@@LB@@LB@Energy -18.88 kcal/mol@LB@Hybridization Energy -40.9125 kcal/mol@LB@Unfolding Energy - mRNA 11.6904 kcal/mol@LB@Unfolding Energy - sRNA 10.3584 kcal/mol@LB@@LB@Position - mRNA 179 -- 222@LB@Position - sRNA 125 -- 163@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 134 -- 140@LB@ |
144 |
0.006712 |
0.1741 |
bsu25040 |
yqgB |
-19.28 |
0.004052 |
60 -- 160 |
55 -- 168 |
Evidence 2a: Function of homologous gene experimentally demonstrated in an other organism; PubMedId: 15294815; Product type ph: phenotype |
|
_____________59_____________________________________________________161\n_____________|______________________________________________________|\n5'-UAA...AAAAC__C_______AACA__CAAU______A_______AG___CCAUCC_________ACUCU...UUU-3'\n______________CG_UGCAAUC____GC____ACAA_C_UAUCCAU__CUU______UCCCAUUUU\n______________||_|||||||____||____||||_|_||:||||__|||______:|||||||:\n______________GC_ACGUUAG____CG____UGUU_G_AUGGGUA__GAA______GGGGUAAAG\n3'-AUU...CCGAA__A_______AAC___UU______A_C_______GA___UAA____________AAACU...CAA-5'\n_____________|______________________________________________________|\n_____________169____________________________________________________54\n |
105 -- 111 |
34 -- 40 |
-33.5165 kcal/mol |
5.00067 kcal/mol |
13.93 kcal/mol |
59 161@LB@ | |@LB@5'-UAA...AAAAC C AACA CAAU A AG CCAUCC ACUCU...UUU-3'@LB@ CG UGCAAUC GC ACAA C UAUCCAU CUU UCCCAUUUU@LB@ || ||||||| || |||| | ||:|||| ||| :|||||||:@LB@ GC ACGUUAG CG UGUU G AUGGGUA GAA GGGGUAAAG@LB@3'-AUU...CCGAA A AAC UU A C GA UAA AAACU...CAA-5'@LB@ | |@LB@ 169 54@LB@@LB@@LB@Energy -19.28 kcal/mol@LB@Hybridization Energy -33.5165 kcal/mol@LB@Unfolding Energy - mRNA 5.00067 kcal/mol@LB@Unfolding Energy - sRNA 13.93 kcal/mol@LB@@LB@Position - mRNA 60 -- 160@LB@Position - sRNA 55 -- 168@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 34 -- 40@LB@ |
145 |
0.006739 |
0.1741 |
bsu12460 |
xlyB |
-11.80 |
0.146979 |
21 -- 64 |
155 -- 186 |
N-acetylmuramoyl-L-alanine amidase XlyB |
bsu12810 bsu25710 bsu25900 bsu21410 |
_____________20____________________________________65\n_____________|_____________________________________|\n5'-UCC...CCACA_____C_G_____AUUUCUC____CU_______A___UUAAA...CGG-3'\n______________UGCUC_U_AUUAA_______CGUU__CAUUGUC_GCA\n______________|:|||_|_||:||_______|:||__|||||||_|||\n______________AUGAG_A_UAGUU_______GUAA__GUAACAG_CGU\n3'-AUU...AAAAA_____A_G_____GUCCU______CU_______G___CGUUC...CAA-5'\n_____________|_____________________________________|\n_____________187___________________________________154\n |
54 -- 60 |
139 -- 145 |
-22.5299 kcal/mol |
4.58402 kcal/mol |
8.54622 kcal/mol |
20 65@LB@ | |@LB@5'-UCC...CCACA C G AUUUCUC CU A UUAAA...CGG-3'@LB@ UGCUC U AUUAA CGUU CAUUGUC GCA@LB@ |:||| | ||:|| |:|| ||||||| |||@LB@ AUGAG A UAGUU GUAA GUAACAG CGU@LB@3'-AUU...AAAAA A G GUCCU CU G CGUUC...CAA-5'@LB@ | |@LB@ 187 154@LB@@LB@@LB@Energy -11.80 kcal/mol@LB@Hybridization Energy -22.5299 kcal/mol@LB@Unfolding Energy - mRNA 4.58402 kcal/mol@LB@Unfolding Energy - sRNA 8.54622 kcal/mol@LB@@LB@Position - mRNA 21 -- 64@LB@Position - sRNA 155 -- 186@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 139 -- 145@LB@ |
146 |
0.00677 |
0.1741 |
bsu29690 |
acuA |
-9.85 |
0.331997 |
126 -- 137 |
14 -- 25 |
acetoin utilization protein AcuA |
|
_____________125____________138\n_____________|______________|\n5'-UAU...AUUCA______________UUUUA...AUG-3'\n______________UAUUCUUC_UCAAU\n______________||:|||||_||||:\n______________AUGAGAAG_AGUUG\n3'-AUU...AAAAA________U_____UCCUG...CAA-5'\n_____________|______________|\n_____________26_____________13\n |
95 -- 101 |
162 -- 168 |
-12.3213 kcal/mol |
1.49895 kcal/mol |
1.40683 kcal/mol |
125 138@LB@ | |@LB@5'-UAU...AUUCA UUUUA...AUG-3'@LB@ UAUUCUUC UCAAU@LB@ ||:||||| ||||:@LB@ AUGAGAAG AGUUG@LB@3'-AUU...AAAAA U UCCUG...CAA-5'@LB@ | |@LB@ 26 13@LB@@LB@@LB@Energy -9.85 kcal/mol@LB@Hybridization Energy -12.3213 kcal/mol@LB@Unfolding Energy - mRNA 1.49895 kcal/mol@LB@Unfolding Energy - sRNA 1.40683 kcal/mol@LB@@LB@Position - mRNA 126 -- 137@LB@Position - sRNA 14 -- 25@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 162 -- 168@LB@ |
147 |
0.006774 |
0.1741 |
bsu08550 |
sspK |
-14.99 |
0.033457 |
165 -- 208 |
137 -- 183 |
small acid-soluble spore protein K |
|
_____________164_____________________________209\n_____________|_______________________________|\n5'-UUU...UUGAU___GAACC___G_____________G_____AAAUA...ACG-3'\n______________CUC_____UAG_GGGAUAU_GACAU_GUCCG\n______________|||_____:|:_:|||:||_|||||_|||||\n______________GAG_____GUU_UCCUGUA_CUGUA_CAGGC\n3'-AUU...AAAAU___AAGUA___G_______A_____A_____GUCGU...CAA-5'\n_____________|_______________________________|\n_____________184_____________________________136\n |
191 -- 197 |
149 -- 155 |
-28.8408 kcal/mol |
8.70873 kcal/mol |
7.49334 kcal/mol |
164 209@LB@ | |@LB@5'-UUU...UUGAU GAACC G G AAAUA...ACG-3'@LB@ CUC UAG GGGAUAU GACAU GUCCG@LB@ ||| :|: :|||:|| ||||| |||||@LB@ GAG GUU UCCUGUA CUGUA CAGGC@LB@3'-AUU...AAAAU AAGUA G A A GUCGU...CAA-5'@LB@ | |@LB@ 184 136@LB@@LB@@LB@Energy -14.99 kcal/mol@LB@Hybridization Energy -28.8408 kcal/mol@LB@Unfolding Energy - mRNA 8.70873 kcal/mol@LB@Unfolding Energy - sRNA 7.49334 kcal/mol@LB@@LB@Position - mRNA 165 -- 208@LB@Position - sRNA 137 -- 183@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 149 -- 155@LB@ |
148 |
0.006782 |
0.1741 |
bsu14050 |
ykuE |
-11.57 |
0.163142 |
1 -- 16 |
37 -- 54 |
metallophosphoesterase |
|
______________1__________________________17\n______________|__________________________|\n___________5'-_____G____________GC_GC____CCCGC...AUC-3'\n______________CCAUC_CU__UUUCCCAU__C__UUGA\n______________|||||_||__||:|||||__|__||||\n______________GGUAG_GA__AAGGGGUA__G__AACU\n3'-AUU...GCAUG_____A__AU________AA_A_____UUAAA...CAA-5'\n_____________|___________________________|\n_____________55__________________________36\n |
10 -- 16 |
37 -- 43 |
-20.8225 kcal/mol |
1.63511 kcal/mol |
9.4766 kcal/mol |
1 17@LB@ | |@LB@ 5'- G GC GC CCCGC...AUC-3'@LB@ CCAUC CU UUUCCCAU C UUGA@LB@ ||||| || ||:||||| | ||||@LB@ GGUAG GA AAGGGGUA G AACU@LB@3'-AUU...GCAUG A AU AA A UUAAA...CAA-5'@LB@ | |@LB@ 55 36@LB@@LB@@LB@Energy -11.57 kcal/mol@LB@Hybridization Energy -20.8225 kcal/mol@LB@Unfolding Energy - mRNA 1.63511 kcal/mol@LB@Unfolding Energy - sRNA 9.4766 kcal/mol@LB@@LB@Position - mRNA 1 -- 16@LB@Position - sRNA 37 -- 54@LB@Position Seed - mRNA 10 -- 16@LB@Position Seed - sRNA 37 -- 43@LB@ |
149 |
0.006788 |
0.1741 |
bsu28960 |
ytxC |
-13.61 |
0.064351 |
236 -- 300 |
132 -- 186 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________235________________________301\n_____________|__________________________|\n________5'-CGA__U________U______________CUUUC...GCA-3'\n______________GC__UUUUGGC_GGCAAUC_UGCCCG\n______________||__|:|||||_::|||||_|:|||:\n______________CG__AGAACCG_UUGUUAG_AUGGGU\n3'-AUU...AGCAA__UU_______U_______C______AGAGA...CAA-5'\n_____________|__________________________|\n_____________187________________________131\n |
7 -- 13 |
67 -- 73 |
-27.0931 kcal/mol |
7.22978 kcal/mol |
8.4393 kcal/mol |
235 301@LB@ | |@LB@ 5'-CGA U U CUUUC...GCA-3'@LB@ GC UUUUGGC GGCAAUC UGCCCG@LB@ || |:||||| ::||||| |:|||:@LB@ CG AGAACCG UUGUUAG AUGGGU@LB@3'-AUU...AGCAA UU U C AGAGA...CAA-5'@LB@ | |@LB@ 187 131@LB@@LB@@LB@Energy -13.61 kcal/mol@LB@Hybridization Energy -27.0931 kcal/mol@LB@Unfolding Energy - mRNA 7.22978 kcal/mol@LB@Unfolding Energy - sRNA 8.4393 kcal/mol@LB@@LB@Position - mRNA 236 -- 300@LB@Position - sRNA 132 -- 186@LB@Position Seed - mRNA 7 -- 13@LB@Position Seed - sRNA 67 -- 73@LB@ |
150 |
0.006829 |
0.1741 |
bsu17970 |
cotM |
-16.22 |
0.018442 |
252 -- 285 |
70 -- 101 |
spore coat protein M |
|
_____________251______________________286\n_____________|________________________|\n5'-AUG...GUAUG________________________UUGAA...UCG-3'\n______________GAUGAAUGGCUUCG__GCAAUUUU\n______________:|||||||||||||__|||||:||\n______________UUACUUACCGAAGC__CGUUAGAA\n3'-AUU...UUUCA______________AA________CCGUU...CAA-5'\n_____________|________________________|\n_____________102______________________69\n |
278 -- 284 |
71 -- 77 |
-28.716 kcal/mol |
7.78723 kcal/mol |
6.67697 kcal/mol |
251 286@LB@ | |@LB@5'-AUG...GUAUG UUGAA...UCG-3'@LB@ GAUGAAUGGCUUCG GCAAUUUU@LB@ :||||||||||||| |||||:||@LB@ UUACUUACCGAAGC CGUUAGAA@LB@3'-AUU...UUUCA AA CCGUU...CAA-5'@LB@ | |@LB@ 102 69@LB@@LB@@LB@Energy -16.22 kcal/mol@LB@Hybridization Energy -28.716 kcal/mol@LB@Unfolding Energy - mRNA 7.78723 kcal/mol@LB@Unfolding Energy - sRNA 6.67697 kcal/mol@LB@@LB@Position - mRNA 252 -- 285@LB@Position - sRNA 70 -- 101@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 71 -- 77@LB@ |
151 |
0.00683 |
0.1741 |
bsu18660 |
yoaM |
-13.14 |
0.080203 |
141 -- 183 |
39 -- 78 |
Evidence 4: Homologs of previously reported genes of unknown function |
bsu18880 bsu20490 |
_____________140________________________________184\n_____________|__________________________________|\n5'-UUU...UAAAU_______________CAAA__A____AAAA____UAAAA...AUA-3'\n______________GAACGAUCGU_CCCA____CU_CUUA____CCCC\n______________:|||:|||||_||||____||_||||____||||\n______________UUUGUUAGCA_GGGU____GA_GAAU____GGGG\n3'-AUU...AACCG__________U____A__________AA______UAAAG...CAA-5'\n_____________|__________________________________|\n_____________79_________________________________38\n |
154 -- 160 |
57 -- 63 |
-25.2857 kcal/mol |
3.90608 kcal/mol |
11.0213 kcal/mol |
140 184@LB@ | |@LB@5'-UUU...UAAAU CAAA A AAAA UAAAA...AUA-3'@LB@ GAACGAUCGU CCCA CU CUUA CCCC@LB@ :|||:||||| |||| || |||| ||||@LB@ UUUGUUAGCA GGGU GA GAAU GGGG@LB@3'-AUU...AACCG U A AA UAAAG...CAA-5'@LB@ | |@LB@ 79 38@LB@@LB@@LB@Energy -13.14 kcal/mol@LB@Hybridization Energy -25.2857 kcal/mol@LB@Unfolding Energy - mRNA 3.90608 kcal/mol@LB@Unfolding Energy - sRNA 11.0213 kcal/mol@LB@@LB@Position - mRNA 141 -- 183@LB@Position - sRNA 39 -- 78@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 57 -- 63@LB@ |
152 |
0.006831 |
0.1741 |
bsu09480 |
yhdI |
-9.89 |
0.327778 |
76 -- 101 |
102 -- 130 |
GntR family transcriptional regulator |
bsu05240 |
_____________75__________________________102\n_____________|___________________________|\n5'-UCU...UAAUU___________A________C______AUCCC...CAA-3'\n______________GUUUCAUAUGG_____UCAU_UUCUCA\n______________|||:|||||::_____|||:_||||||\n______________CAAGGUAUAUU_____AGUG_AAGAGU\n3'-AUU...UCGUU___________ACAAC____A______AGAAG...CAA-5'\n_____________|___________________________|\n_____________131_________________________101\n |
79 -- 85 |
121 -- 127 |
-18.1477 kcal/mol |
2.87073 kcal/mol |
6.25825 kcal/mol |
75 102@LB@ | |@LB@5'-UCU...UAAUU A C AUCCC...CAA-3'@LB@ GUUUCAUAUGG UCAU UUCUCA@LB@ |||:|||||:: |||: ||||||@LB@ CAAGGUAUAUU AGUG AAGAGU@LB@3'-AUU...UCGUU ACAAC A AGAAG...CAA-5'@LB@ | |@LB@ 131 101@LB@@LB@@LB@Energy -9.89 kcal/mol@LB@Hybridization Energy -18.1477 kcal/mol@LB@Unfolding Energy - mRNA 2.87073 kcal/mol@LB@Unfolding Energy - sRNA 6.25825 kcal/mol@LB@@LB@Position - mRNA 76 -- 101@LB@Position - sRNA 102 -- 130@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 121 -- 127@LB@ |
153 |
0.007014 |
0.1751 |
bsu10400 |
yhxC |
-16.66 |
0.014878 |
138 -- 167 |
138 -- 167 |
oxidoreductase |
|
_____________137____________________________168\n_____________|______________________________|\n5'-UCC...UCUAU________AC______AGCA__________AUAAC...CGA-3'\n______________CUUUUCAU__AUAGGA____GGCAUUGUUC\n______________||:|||||__|:||||____|:||||||:|\n______________GAGAAGUA__UGUCCU____CUGUAACAGG\n3'-AUU...AAAAU________GU______GUAA__________CGUCG...CAA-5'\n_____________|______________________________|\n_____________168____________________________137\n |
161 -- 167 |
138 -- 144 |
-29.0079 kcal/mol |
5.02609 kcal/mol |
7.37082 kcal/mol |
137 168@LB@ | |@LB@5'-UCC...UCUAU AC AGCA AUAAC...CGA-3'@LB@ CUUUUCAU AUAGGA GGCAUUGUUC@LB@ ||:||||| |:|||| |:||||||:|@LB@ GAGAAGUA UGUCCU CUGUAACAGG@LB@3'-AUU...AAAAU GU GUAA CGUCG...CAA-5'@LB@ | |@LB@ 168 137@LB@@LB@@LB@Energy -16.66 kcal/mol@LB@Hybridization Energy -29.0079 kcal/mol@LB@Unfolding Energy - mRNA 5.02609 kcal/mol@LB@Unfolding Energy - sRNA 7.37082 kcal/mol@LB@@LB@Position - mRNA 138 -- 167@LB@Position - sRNA 138 -- 167@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 138 -- 144@LB@ |
154 |
0.00707 |
0.1751 |
bsu07830 |
yfkO |
-12.90 |
0.089530 |
138 -- 152 |
158 -- 172 |
NAD(P)H nitroreductase YfkO |
|
_____________137____________153\n_____________|______________|\n5'-GGA...GUACU______________UAAUG...AAU-3'\n______________UUUACUUUUUAUCA\n______________||||||:||:||||\n______________AAAUGAGAAGUAGU\n3'-AUU...AAAAA______________UGUCC...CAA-5'\n_____________|______________|\n_____________173____________157\n |
146 -- 152 |
158 -- 164 |
-13.59 kcal/mol |
1.38023 kcal/mol |
1.02713 kcal/mol |
137 153@LB@ | |@LB@5'-GGA...GUACU UAAUG...AAU-3'@LB@ UUUACUUUUUAUCA@LB@ ||||||:||:||||@LB@ AAAUGAGAAGUAGU@LB@3'-AUU...AAAAA UGUCC...CAA-5'@LB@ | |@LB@ 173 157@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -13.59 kcal/mol@LB@Unfolding Energy - mRNA 1.38023 kcal/mol@LB@Unfolding Energy - sRNA 1.02713 kcal/mol@LB@@LB@Position - mRNA 138 -- 152@LB@Position - sRNA 158 -- 172@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 158 -- 164@LB@ |
155 |
0.00708 |
0.1751 |
bsu17280 |
ymaD |
-7.93 |
0.631070 |
192 -- 223 |
42 -- 69 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 16267290; Product type pe : enzyme' |
|
_____________191______________________________224\n_____________|________________________________|\n5'-AAA...AAGGA___A_______G_CAGA_____AU________AAAAG...UUC-3'\n______________GGC_AAACAAU_G____UCAUC__UUUUAUUU\n______________|||_|||||||_|____:||||__|:|||||:\n______________CCG_UUUGUUA_C____GGUAG__AGAAUAAG\n3'-AUU...UAGAA___________G_AUG________________GGGUA...CAA-5'\n_____________|________________________________|\n_____________70_______________________________41\n |
217 -- 223 |
42 -- 48 |
-20.5024 kcal/mol |
4.54925 kcal/mol |
8.89481 kcal/mol |
191 224@LB@ | |@LB@5'-AAA...AAGGA A G CAGA AU AAAAG...UUC-3'@LB@ GGC AAACAAU G UCAUC UUUUAUUU@LB@ ||| ||||||| | :|||| |:|||||:@LB@ CCG UUUGUUA C GGUAG AGAAUAAG@LB@3'-AUU...UAGAA G AUG GGGUA...CAA-5'@LB@ | |@LB@ 70 41@LB@@LB@@LB@Energy -7.93 kcal/mol@LB@Hybridization Energy -20.5024 kcal/mol@LB@Unfolding Energy - mRNA 4.54925 kcal/mol@LB@Unfolding Energy - sRNA 8.89481 kcal/mol@LB@@LB@Position - mRNA 192 -- 223@LB@Position - sRNA 42 -- 69@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 42 -- 48@LB@ |
156 |
0.007194 |
0.1751 |
bsu12900 |
htrA |
-15.16 |
0.030869 |
26 -- 118 |
38 -- 130 |
serine protease Do-like HtrA |
|
_____________25_______________________________________________________________________________________________________119\n_____________|________________________________________________________________________________________________________|\n5'-CUG...AAUCU_______CGACUCA__________A___A_____U________GU__AC____UUCC___C____UC_________U_______AA____UUCAUUUUUA____ACAGU...AUG-3'\n______________GUUCCAU________GUC_CUUUC_UAU___CAA____AUGAA__GU__CGUU____GCA_UUUU_____ACAAUU___CCCAU__UCUU__________UCCC\n______________|||||||________|||_|||||_:||___|||____|||||__|:__||||____|||_|:||_____|||||:___|||||__||||__________||||\n______________CAAGGUA________CAG_GAAAG_GUA___GUU____UACUU__CG__GCAA____CGU_AGAA_____UGUUAG___GGGUA__AGAA__________AGGG\n3'-AUU...UCGUU_______UAUUACAA___U_____A___GAA___UCAU_____AC__AA___________U____CCGUU______CAU_____G_____UA____________GUAAA...CAA-5'\n_____________|________________________________________________________________________________________________________|\n_____________131______________________________________________________________________________________________________37\n |
26 -- 32 |
124 -- 130 |
-40.6941 kcal/mol |
8.96571 kcal/mol |
22.8172 kcal/mol |
25 119@LB@ | |@LB@5'-CUG...AAUCU CGACUCA A A U GU AC UUCC C UC U AA UUCAUUUUUA ACAGU...AUG-3'@LB@ GUUCCAU GUC CUUUC UAU CAA AUGAA GU CGUU GCA UUUU ACAAUU CCCAU UCUU UCCC@LB@ ||||||| ||| ||||| :|| ||| ||||| |: |||| ||| |:|| |||||: ||||| |||| ||||@LB@ CAAGGUA CAG GAAAG GUA GUU UACUU CG GCAA CGU AGAA UGUUAG GGGUA AGAA AGGG@LB@3'-AUU...UCGUU UAUUACAA U A GAA UCAU AC AA U CCGUU CAU G UA GUAAA...CAA-5'@LB@ | |@LB@ 131 37@LB@@LB@@LB@Energy -15.16 kcal/mol@LB@Hybridization Energy -40.6941 kcal/mol@LB@Unfolding Energy - mRNA 8.96571 kcal/mol@LB@Unfolding Energy - sRNA 22.8172 kcal/mol@LB@@LB@Position - mRNA 26 -- 118@LB@Position - sRNA 38 -- 130@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 124 -- 130@LB@ |
157 |
0.007221 |
0.1751 |
bsu40660 |
yybF |
-12.55 |
0.105157 |
243 -- 270 |
125 -- 152 |
MFS transporter |
|
_____________242__________________________271\n_____________|____________________________|\n5'-UGU...AAAUU_____U__U__C_____U__________AUACA...AGC-3'\n______________ACGUU_GC_UU_UUCGC_GCGGGUUUCA\n______________||:||_:|_||_|:|||_||::|||:||\n______________UGUAA_UG_AA_AGGCG_CGUUCAAGGU\n3'-AUU...UGUCC_____C__U__C_____U__________AUAUU...CAA-5'\n_____________|____________________________|\n_____________153__________________________124\n |
264 -- 270 |
125 -- 131 |
-24.436 kcal/mol |
4.92439 kcal/mol |
8.98549 kcal/mol |
242 271@LB@ | |@LB@5'-UGU...AAAUU U U C U AUACA...AGC-3'@LB@ ACGUU GC UU UUCGC GCGGGUUUCA@LB@ ||:|| :| || |:||| ||::|||:||@LB@ UGUAA UG AA AGGCG CGUUCAAGGU@LB@3'-AUU...UGUCC C U C U AUAUU...CAA-5'@LB@ | |@LB@ 153 124@LB@@LB@@LB@Energy -12.55 kcal/mol@LB@Hybridization Energy -24.436 kcal/mol@LB@Unfolding Energy - mRNA 4.92439 kcal/mol@LB@Unfolding Energy - sRNA 8.98549 kcal/mol@LB@@LB@Position - mRNA 243 -- 270@LB@Position - sRNA 125 -- 152@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 125 -- 131@LB@ |
158 |
0.007267 |
0.1751 |
bsu33000 |
htrB |
-17.04 |
0.012352 |
105 -- 237 |
50 -- 180 |
serine protease Do-like HtrB |
|
_____________104_____________________________238\n_____________|_______________________________|\n5'-UUU...GUGCU_______UCUCC______U______A_____ACUUG...CUG-3'\n______________UUGCUUU_____UCAUUA_UGGGAC_AUUGA\n______________||:||:|_____||||:|_::||||_|||||\n______________AAUGAGA_____AGUAGU_GUCCUG_UAACU\n3'-AUU...AAAAA__________________U____________GUAAC...CAA-5'\n_____________|_______________________________|\n_____________181_____________________________49\n |
110 -- 116 |
164 -- 170 |
-21.2082 kcal/mol |
7.59468 kcal/mol |
7.14638 kcal/mol |
104 238@LB@ | |@LB@5'-UUU...GUGCU UCUCC U A ACUUG...CUG-3'@LB@ UUGCUUU UCAUUA UGGGAC AUUGA@LB@ ||:||:| ||||:| ::|||| |||||@LB@ AAUGAGA AGUAGU GUCCUG UAACU@LB@3'-AUU...AAAAA U GUAAC...CAA-5'@LB@ | |@LB@ 181 49@LB@@LB@@LB@Energy -17.04 kcal/mol@LB@Hybridization Energy -21.2082 kcal/mol@LB@Unfolding Energy - mRNA 7.59468 kcal/mol@LB@Unfolding Energy - sRNA 7.14638 kcal/mol@LB@@LB@Position - mRNA 105 -- 237@LB@Position - sRNA 50 -- 180@LB@Position Seed - mRNA 110 -- 116@LB@Position Seed - sRNA 164 -- 170@LB@ |
159 |
0.007366 |
0.1751 |
bsu06380 |
yebC |
-16.67 |
0.014812 |
77 -- 156 |
105 -- 185 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pm: membrane component' |
|
_____________76__________________________________________________________________________157\n_____________|___________________________________________________________________________|\n5'-ACC...CAUGC_______AA___G__AAU________________AGGAA___UUC___A__U____UAA________________GCUGA...CGA-3'\n______________UUUACUU___AU_GA___GAC_UUGAC__UGUUC_____GGC___GGU_CC_UAUA___GUGUU_UUAUUUUCUU\n______________||||||:___||_:|___|||_|||||__|||:|_____:||___:||_||_||||___:||||_|:|:|||||:\n______________AAAUGAG___UA_UU___CUG_AACUG__ACAGG_____UCG___UCA_GG_AUAU___UACAA_AGUGAAAGAG\n3'-AUU...AAAAA_______AAG__G__GUC___U_____UA_____CG______U_____A__U____________C__________UAGAA...CAA-5'\n_____________|___________________________________________________________________________|\n_____________186_________________________________________________________________________104\n |
87 -- 93 |
165 -- 171 |
-36.2834 kcal/mol |
12.0661 kcal/mol |
14.3768 kcal/mol |
76 157@LB@ | |@LB@5'-ACC...CAUGC AA G AAU AGGAA UUC A U UAA GCUGA...CGA-3'@LB@ UUUACUU AU GA GAC UUGAC UGUUC GGC GGU CC UAUA GUGUU UUAUUUUCUU@LB@ ||||||: || :| ||| ||||| |||:| :|| :|| || |||| :|||| |:|:|||||:@LB@ AAAUGAG UA UU CUG AACUG ACAGG UCG UCA GG AUAU UACAA AGUGAAAGAG@LB@3'-AUU...AAAAA AAG G GUC U UA CG U A U C UAGAA...CAA-5'@LB@ | |@LB@ 186 104@LB@@LB@@LB@Energy -16.67 kcal/mol@LB@Hybridization Energy -36.2834 kcal/mol@LB@Unfolding Energy - mRNA 12.0661 kcal/mol@LB@Unfolding Energy - sRNA 14.3768 kcal/mol@LB@@LB@Position - mRNA 77 -- 156@LB@Position - sRNA 105 -- 185@LB@Position Seed - mRNA 87 -- 93@LB@Position Seed - sRNA 165 -- 171@LB@ |
160 |
0.007403 |
0.1751 |
bsu11139 |
yizC |
-17.39 |
0.010400 |
11 -- 81 |
42 -- 107 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________10____________________________________________________________________________82\n_____________|_____________________________________________________________________________|\n5'-UUG...GACGA_______CG________UG______GG____________CAAAAUG_________AGCAA_____GAAGG_______AGCAG...UGA-3'\n______________CUCAUCU__UCAAAGUA__GAA_GG_______GCAGUCU_______GGUAAACGA_____AUCCA_____UUUAUUC\n______________|||||||__||||||||__|||_||_______|||:|||_______||:||||:|_____|:|||_____:||||||\n______________GAGUAGA__AGUUUCAU__CUU_CC_______CGUUAGA_______CCGUUUGUU_____UGGGU_____GAAUAAG\n3'-AUU...UGAAA_________________UA___A__GAAGCAA_______A_______________AGCA______AGA_________GGGUA...CAA-5'\n_____________|_____________________________________________________________________________|\n_____________108___________________________________________________________________________41\n |
75 -- 81 |
42 -- 48 |
-46.4368 kcal/mol |
15.8344 kcal/mol |
18.2654 kcal/mol |
10 82@LB@ | |@LB@5'-UUG...GACGA CG UG GG CAAAAUG AGCAA GAAGG AGCAG...UGA-3'@LB@ CUCAUCU UCAAAGUA GAA GG GCAGUCU GGUAAACGA AUCCA UUUAUUC@LB@ ||||||| |||||||| ||| || |||:||| ||:||||:| |:||| :||||||@LB@ GAGUAGA AGUUUCAU CUU CC CGUUAGA CCGUUUGUU UGGGU GAAUAAG@LB@3'-AUU...UGAAA UA A GAAGCAA A AGCA AGA GGGUA...CAA-5'@LB@ | |@LB@ 108 41@LB@@LB@@LB@Energy -17.39 kcal/mol@LB@Hybridization Energy -46.4368 kcal/mol@LB@Unfolding Energy - mRNA 15.8344 kcal/mol@LB@Unfolding Energy - sRNA 18.2654 kcal/mol@LB@@LB@Position - mRNA 11 -- 81@LB@Position - sRNA 42 -- 107@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 42 -- 48@LB@ |
161 |
0.00741 |
0.1751 |
bsu24000 |
bmrU |
-16.51 |
0.015967 |
115 -- 144 |
156 -- 183 |
lipid kinase BmrU |
|
_____________114____________________________________145\n_____________|______________________________________|\n5'-GGA...AAUUA___________UC____AA_ACCUC_____________AUCUG...AUU-3'\n______________AAG_UCCAUGU__AAUG__G_____UC_CUUUUUCAUC\n______________|||_|||||:|__||||__|_____||_||||:|||||\n______________UUC_AGGUAUA__UUAC__C_____AG_GAAAGAGUAG\n3'-AUU...CGUCG___A_____________AA________U__________AAGUU...CAA-5'\n_____________|______________________________________|\n_____________184____________________________________155\n |
56 -- 62 |
102 -- 108 |
-19.6184 kcal/mol |
4.38872 kcal/mol |
6.78097 kcal/mol |
114 145@LB@ | |@LB@5'-GGA...AAUUA UC AA ACCUC AUCUG...AUU-3'@LB@ AAG UCCAUGU AAUG G UC CUUUUUCAUC@LB@ ||| |||||:| |||| | || ||||:|||||@LB@ UUC AGGUAUA UUAC C AG GAAAGAGUAG@LB@3'-AUU...CGUCG A AA U AAGUU...CAA-5'@LB@ | |@LB@ 184 155@LB@@LB@@LB@Energy -16.51 kcal/mol@LB@Hybridization Energy -19.6184 kcal/mol@LB@Unfolding Energy - mRNA 4.38872 kcal/mol@LB@Unfolding Energy - sRNA 6.78097 kcal/mol@LB@@LB@Position - mRNA 115 -- 144@LB@Position - sRNA 156 -- 183@LB@Position Seed - mRNA 56 -- 62@LB@Position Seed - sRNA 102 -- 108@LB@ |
162 |
0.007531 |
0.1751 |
bsu14350 |
yknX |
-8.74 |
0.495402 |
179 -- 195 |
123 -- 140 |
efflux system component YknX |
|
_____________178________________196\n_____________|__________________|\n5'-UGA...UCAAU____________G_____AGCUC...CCG-3'\n______________UCUGUGGCGGGU__CAUA\n______________||:|::||::||__||||\n______________AGGCGUCGUUCA__GUAU\n3'-AUU...GUAAC____________AG____AUUAC...CAA-5'\n_____________|__________________|\n_____________141________________122\n |
184 -- 190 |
129 -- 135 |
-18.5785 kcal/mol |
5.82762 kcal/mol |
6.13212 kcal/mol |
178 196@LB@ | |@LB@5'-UGA...UCAAU G AGCUC...CCG-3'@LB@ UCUGUGGCGGGU CAUA@LB@ ||:|::||::|| ||||@LB@ AGGCGUCGUUCA GUAU@LB@3'-AUU...GUAAC AG AUUAC...CAA-5'@LB@ | |@LB@ 141 122@LB@@LB@@LB@Energy -8.74 kcal/mol@LB@Hybridization Energy -18.5785 kcal/mol@LB@Unfolding Energy - mRNA 5.82762 kcal/mol@LB@Unfolding Energy - sRNA 6.13212 kcal/mol@LB@@LB@Position - mRNA 179 -- 195@LB@Position - sRNA 123 -- 140@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 129 -- 135@LB@ |
163 |
0.007546 |
0.1751 |
bsu03210 |
ycgN |
-11.47 |
0.170088 |
123 -- 268 |
12 -- 147 |
1-pyrroline-5-carboxylate dehydrogenase |
|
_____________122______________________________________________________269\n_____________|________________________________________________________|\n5'-CAA...CCUUA__________A___AU__A_AA______AAGAUCAAAACAACG_____________AAAAG...UAG-3'\n______________CAAACA__CG_GCC__UC_C__AUUUCC_______________UGGAAGCGUUUAA\n______________||||||__||_:||__||_|__|||:||_______________||:||:||:||||\n______________GUUUGU__GC_UGG__AG_G__UAAGGG_______________ACUUUUGCGAAUU\n3'-AUU...GAACC______UA__A___GU__A_AA______GUAAAGAAACUUUAA_____________AAAGA...CAA-5'\n_____________|________________________________________________________|\n_____________148______________________________________________________11\n |
262 -- 268 |
12 -- 18 |
-30.9991 kcal/mol |
6.38057 kcal/mol |
15.527 kcal/mol |
122 269@LB@ | |@LB@5'-CAA...CCUUA A AU A AA AAGAUCAAAACAACG AAAAG...UAG-3'@LB@ CAAACA CG GCC UC C AUUUCC UGGAAGCGUUUAA@LB@ |||||| || :|| || | |||:|| ||:||:||:||||@LB@ GUUUGU GC UGG AG G UAAGGG ACUUUUGCGAAUU@LB@3'-AUU...GAACC UA A GU A AA GUAAAGAAACUUUAA AAAGA...CAA-5'@LB@ | |@LB@ 148 11@LB@@LB@@LB@Energy -11.47 kcal/mol@LB@Hybridization Energy -30.9991 kcal/mol@LB@Unfolding Energy - mRNA 6.38057 kcal/mol@LB@Unfolding Energy - sRNA 15.527 kcal/mol@LB@@LB@Position - mRNA 123 -- 268@LB@Position - sRNA 12 -- 147@LB@Position Seed - mRNA 262 -- 268@LB@Position Seed - sRNA 12 -- 18@LB@ |
164 |
0.007653 |
0.1751 |
bsu02110 |
ybyB |
-7.82 |
0.651200 |
271 -- 286 |
38 -- 56 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________270_____287\n_____________|_______|\n5'-UUG...AAAAG_______AAAUC...AAU-3'\n______________ACCCGUC\n______________||||:||\n______________UGGGUAG\n3'-AUU...UAGCA_______AGAAU...CAA-5'\n_____________|_______|\n_____________57______37\n |
271 -- 277 |
50 -- 56 |
-11.5721 kcal/mol |
0.816393 kcal/mol |
3.06627 kcal/mol |
270 287@LB@ | |@LB@5'-UUG...AAAAG AAAUC...AAU-3'@LB@ ACCCGUC@LB@ ||||:||@LB@ UGGGUAG@LB@3'-AUU...UAGCA AGAAU...CAA-5'@LB@ | |@LB@ 57 37@LB@@LB@@LB@Energy -7.82 kcal/mol@LB@Hybridization Energy -11.5721 kcal/mol@LB@Unfolding Energy - mRNA 0.816393 kcal/mol@LB@Unfolding Energy - sRNA 3.06627 kcal/mol@LB@@LB@Position - mRNA 271 -- 286@LB@Position - sRNA 38 -- 56@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 50 -- 56@LB@ |
165 |
0.007704 |
0.1751 |
bsu18170 |
yngA |
-16.77 |
0.014091 |
132 -- 192 |
122 -- 181 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pm: membrane component' |
|
_____________131_____________________________________________193\n_____________|_______________________________________________|\n5'-ACA...CAUAU_________UGUU____CA___C_______UAU______________CAACA...CGC-3'\n______________UUUAUUAAU____UAUU__ACA_UGUCCGC___AGUAA__UCCAUAU\n______________||:||:||:____:|||__|||_|||||||___||:||__|||||||\n______________AAGUAGUUG____GUAA__UGU_ACAGGCG___UCGUU__AGGUAUA\n3'-AUU...AUGAG_________UCCU____C____A_______________CA_______UUACA...CAA-5'\n_____________|_______________________________________________|\n_____________182_____________________________________________121\n |
186 -- 192 |
122 -- 128 |
-30.4083 kcal/mol |
4.20108 kcal/mol |
10.3807 kcal/mol |
131 193@LB@ | |@LB@5'-ACA...CAUAU UGUU CA C UAU CAACA...CGC-3'@LB@ UUUAUUAAU UAUU ACA UGUCCGC AGUAA UCCAUAU@LB@ ||:||:||: :||| ||| ||||||| ||:|| |||||||@LB@ AAGUAGUUG GUAA UGU ACAGGCG UCGUU AGGUAUA@LB@3'-AUU...AUGAG UCCU C A CA UUACA...CAA-5'@LB@ | |@LB@ 182 121@LB@@LB@@LB@Energy -16.77 kcal/mol@LB@Hybridization Energy -30.4083 kcal/mol@LB@Unfolding Energy - mRNA 4.20108 kcal/mol@LB@Unfolding Energy - sRNA 10.3807 kcal/mol@LB@@LB@Position - mRNA 132 -- 192@LB@Position - sRNA 122 -- 181@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 122 -- 128@LB@ |
166 |
0.007737 |
0.1751 |
bsu10770 |
wprA |
-9.60 |
0.364837 |
176 -- 232 |
111 -- 164 |
cell wall-associated protease |
|
_____________175_________________________________________________________233\n_____________|___________________________________________________________|\n5'-CUG...GGAGA_______UUUU______G_GAUA____GAAA_____AAAA_____GCUCG______G__GGCAG...GCG-3'\n______________UUCAUUA____GCAGGA_G____ACAU____CGCAG_____UUCA______GUUGU_GC\n______________|||||:|____:|||||_:____||||____|||||_____|:||______|||||_:|\n______________AAGUAGU____UGUCCU_U____UGUA____GCGUC_____AGGU______CAACA_UG\n3'-AUU...AUGAG_________________G_AAC_____ACAG_____GUUCA____AUAUUA_____G__AAAGA...CAA-5'\n_____________|___________________________________________________________|\n_____________165_________________________________________________________110\n |
176 -- 182 |
158 -- 164 |
-36.1081 kcal/mol |
15.1078 kcal/mol |
11.9485 kcal/mol |
175 233@LB@ | |@LB@5'-CUG...GGAGA UUUU G GAUA GAAA AAAA GCUCG G GGCAG...GCG-3'@LB@ UUCAUUA GCAGGA G ACAU CGCAG UUCA GUUGU GC@LB@ |||||:| :||||| : |||| ||||| |:|| ||||| :|@LB@ AAGUAGU UGUCCU U UGUA GCGUC AGGU CAACA UG@LB@3'-AUU...AUGAG G AAC ACAG GUUCA AUAUUA G AAAGA...CAA-5'@LB@ | |@LB@ 165 110@LB@@LB@@LB@Energy -9.60 kcal/mol@LB@Hybridization Energy -36.1081 kcal/mol@LB@Unfolding Energy - mRNA 15.1078 kcal/mol@LB@Unfolding Energy - sRNA 11.9485 kcal/mol@LB@@LB@Position - mRNA 176 -- 232@LB@Position - sRNA 111 -- 164@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 158 -- 164@LB@ |
167 |
0.007775 |
0.1751 |
bsu09889 |
yhzD |
-15.75 |
0.023145 |
43 -- 92 |
39 -- 89 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________42____________________________________________________93\n_____________|_____________________________________________________|\n5'-GGA...CUCCA____U_______AC______AAUU_______C___A____C____C_______UGACC...GUG-3'\n______________AAUG_CUUCGUU__GUGAUC____GUAAGCA__UG_AUCU__CUC___UUCCC\n______________||||_|||||||__|::|||____|:||:||__:|_|:|:__|||___|||||\n______________UUAC_GAAGCAA__CGUUAG____CGUUUGU__GC_UGGG__GAG___AAGGG\n3'-AUU...AUUAC____C_______________AAC________UA__A____UA___AAU_____GUAAA...CAA-5'\n_____________|_____________________________________________________|\n_____________90____________________________________________________38\n |
67 -- 73 |
62 -- 68 |
-30.4166 kcal/mol |
5.34264 kcal/mol |
10.926 kcal/mol |
42 93@LB@ | |@LB@5'-GGA...CUCCA U AC AAUU C A C C UGACC...GUG-3'@LB@ AAUG CUUCGUU GUGAUC GUAAGCA UG AUCU CUC UUCCC@LB@ |||| ||||||| |::||| |:||:|| :| |:|: ||| |||||@LB@ UUAC GAAGCAA CGUUAG CGUUUGU GC UGGG GAG AAGGG@LB@3'-AUU...AUUAC C AAC UA A UA AAU GUAAA...CAA-5'@LB@ | |@LB@ 90 38@LB@@LB@@LB@Energy -15.75 kcal/mol@LB@Hybridization Energy -30.4166 kcal/mol@LB@Unfolding Energy - mRNA 5.34264 kcal/mol@LB@Unfolding Energy - sRNA 10.926 kcal/mol@LB@@LB@Position - mRNA 43 -- 92@LB@Position - sRNA 39 -- 89@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 62 -- 68@LB@ |
168 |
0.007777 |
0.1751 |
bsu32270 |
yutH |
-11.70 |
0.153975 |
226 -- 259 |
121 -- 158 |
endospore coat-associated protein YutH |
|
_____________225____________________________________260\n_____________|______________________________________|\n5'-UGC...AGAAA____C______C____CAG_______U___________CCAGC...ACU-3'\n______________AAUA_GGCAUU_ACAU_____GCAGC___UUCCAUGUA\n______________||:|_|:||||_||||_____|||||___||||||:||\n______________UUGU_CUGUAA_UGUA_____CGUCG___AAGGUAUAU\n3'-AUU...AGUAG____C______C____ACAGG_____UUC_________UACAA...CAA-5'\n_____________|______________________________________|\n_____________159____________________________________120\n |
253 -- 259 |
121 -- 127 |
-28.4364 kcal/mol |
6.47482 kcal/mol |
10.499 kcal/mol |
225 260@LB@ | |@LB@5'-UGC...AGAAA C C CAG U CCAGC...ACU-3'@LB@ AAUA GGCAUU ACAU GCAGC UUCCAUGUA@LB@ ||:| |:|||| |||| ||||| ||||||:||@LB@ UUGU CUGUAA UGUA CGUCG AAGGUAUAU@LB@3'-AUU...AGUAG C C ACAGG UUC UACAA...CAA-5'@LB@ | |@LB@ 159 120@LB@@LB@@LB@Energy -11.70 kcal/mol@LB@Hybridization Energy -28.4364 kcal/mol@LB@Unfolding Energy - mRNA 6.47482 kcal/mol@LB@Unfolding Energy - sRNA 10.499 kcal/mol@LB@@LB@Position - mRNA 226 -- 259@LB@Position - sRNA 121 -- 158@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 121 -- 127@LB@ |
169 |
0.007812 |
0.1751 |
bsu04680 |
rsbS |
-7.92 |
0.633185 |
77 -- 93 |
53 -- 67 |
RsbT antagonist protein RsbS |
|
_____________76___________________94\n_____________|____________________|\n5'-UAU...GGAAA______AAACAA________CUGGG...AAG-3'\n______________UUGCUC______UCGUCAAC\n______________||:|||______||:|||||\n______________AAUGAG______AGUAGUUG\n3'-AUU...AAAAA______A_____________UCCUG...CAA-5'\n_____________|____________________|\n_____________68___________________52\n |
85 -- 91 |
156 -- 162 |
-12.3218 kcal/mol |
3.62054 kcal/mol |
1.40896 kcal/mol |
76 94@LB@ | |@LB@5'-UAU...GGAAA AAACAA CUGGG...AAG-3'@LB@ UUGCUC UCGUCAAC@LB@ ||:||| ||:|||||@LB@ AAUGAG AGUAGUUG@LB@3'-AUU...AAAAA A UCCUG...CAA-5'@LB@ | |@LB@ 68 52@LB@@LB@@LB@Energy -7.92 kcal/mol@LB@Hybridization Energy -12.3218 kcal/mol@LB@Unfolding Energy - mRNA 3.62054 kcal/mol@LB@Unfolding Energy - sRNA 1.40896 kcal/mol@LB@@LB@Position - mRNA 77 -- 93@LB@Position - sRNA 53 -- 67@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 156 -- 162@LB@ |
170 |
0.007871 |
0.1751 |
bsu13520 |
ykrP |
-11.14 |
0.196181 |
76 -- 136 |
99 -- 167 |
membrane-bound acyltransferase YkrP |
|
_____________75____________137\n_____________|_____________|\n5'-GGA...CCGUC_____A_______CUAAC...AUC-3'\n______________ACUUU_CAUCGAC\n______________|||:|_||||:||\n______________UGAGA_GUAGUUG\n3'-AUU...AAAAA_____A_______UCCUG...CAA-5'\n_____________|_____________|\n_____________168___________98\n |
91 -- 97 |
156 -- 162 |
-12.1838 kcal/mol |
0.966795 kcal/mol |
1.40592 kcal/mol |
75 137@LB@ | |@LB@5'-GGA...CCGUC A CUAAC...AUC-3'@LB@ ACUUU CAUCGAC@LB@ |||:| ||||:||@LB@ UGAGA GUAGUUG@LB@3'-AUU...AAAAA A UCCUG...CAA-5'@LB@ | |@LB@ 168 98@LB@@LB@@LB@Energy -11.14 kcal/mol@LB@Hybridization Energy -12.1838 kcal/mol@LB@Unfolding Energy - mRNA 0.966795 kcal/mol@LB@Unfolding Energy - sRNA 1.40592 kcal/mol@LB@@LB@Position - mRNA 76 -- 136@LB@Position - sRNA 99 -- 167@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 156 -- 162@LB@ |
171 |
0.007883 |
0.1751 |
bsu38330 |
lrgB |
-10.47 |
0.260275 |
28 -- 48 |
159 -- 187 |
'Evidence 2a: Function of homologous gene experimentally demonstrated in an other organism; PubMedId: 15659658 15849754 16850406; Product type r : regulator' |
|
_____________27____________49\n_____________|_____________|\n5'-GAG...CUGCU_____________CCGUC...UAU-3'\n______________UUUAUUUUUUAUC\n______________||||:|:||:|||\n______________AAAUGAGAAGUAG\n3'-AUU...AAAAA_____________UUGUC...CAA-5'\n_____________|_____________|\n_____________188___________158\n |
42 -- 48 |
159 -- 165 |
-9.66314 kcal/mol |
1.00478 kcal/mol |
0.734181 kcal/mol |
27 49@LB@ | |@LB@5'-GAG...CUGCU CCGUC...UAU-3'@LB@ UUUAUUUUUUAUC@LB@ ||||:|:||:|||@LB@ AAAUGAGAAGUAG@LB@3'-AUU...AAAAA UUGUC...CAA-5'@LB@ | |@LB@ 188 158@LB@@LB@@LB@Energy -10.47 kcal/mol@LB@Hybridization Energy -9.66314 kcal/mol@LB@Unfolding Energy - mRNA 1.00478 kcal/mol@LB@Unfolding Energy - sRNA 0.734181 kcal/mol@LB@@LB@Position - mRNA 28 -- 48@LB@Position - sRNA 159 -- 187@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 159 -- 165@LB@ |
172 |
0.008071 |
0.1751 |
bsu03860 |
ycnD |
-16.76 |
0.014170 |
153 -- 167 |
135 -- 149 |
FMN reductase |
|
_____________152_____________168\n_____________|_______________|\n5'-CGC...UCCUC_______________CAGAG...CGG-3'\n______________UUGAUGUUGUCCGCA\n______________||||::|||||||||\n______________AACUGUAACAGGCGU\n3'-AUU...CCUGU_______________CGUUC...CAA-5'\n_____________|_______________|\n_____________150_____________134\n |
161 -- 167 |
135 -- 141 |
-23.0656 kcal/mol |
2.48067 kcal/mol |
5.52377 kcal/mol |
152 168@LB@ | |@LB@5'-CGC...UCCUC CAGAG...CGG-3'@LB@ UUGAUGUUGUCCGCA@LB@ ||||::|||||||||@LB@ AACUGUAACAGGCGU@LB@3'-AUU...CCUGU CGUUC...CAA-5'@LB@ | |@LB@ 150 134@LB@@LB@@LB@Energy -16.76 kcal/mol@LB@Hybridization Energy -23.0656 kcal/mol@LB@Unfolding Energy - mRNA 2.48067 kcal/mol@LB@Unfolding Energy - sRNA 5.52377 kcal/mol@LB@@LB@Position - mRNA 153 -- 167@LB@Position - sRNA 135 -- 149@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 135 -- 141@LB@ |
173 |
0.008072 |
0.1751 |
bsu38150 |
qoxC |
-9.07 |
0.441891 |
44 -- 68 |
85 -- 107 |
quinol oxidase subunit 3 |
|
_____________43__________________69\n_____________|___________________|\n5'-ACC...AAUAU______GAAACC_______UUAAU...CAG-3'\n______________CAAUCU______GGCAGAC\n______________||||||______||||:||\n______________GUUAGA______CCGUUUG\n3'-AUU...GCAAC______A____________UUAGC...CAA-5'\n_____________|___________________|\n_____________108_________________84\n |
258 -- 264 |
63 -- 69 |
-12.9926 kcal/mol |
3.83118 kcal/mol |
4.58338 kcal/mol |
43 69@LB@ | |@LB@5'-ACC...AAUAU GAAACC UUAAU...CAG-3'@LB@ CAAUCU GGCAGAC@LB@ |||||| ||||:||@LB@ GUUAGA CCGUUUG@LB@3'-AUU...GCAAC A UUAGC...CAA-5'@LB@ | |@LB@ 108 84@LB@@LB@@LB@Energy -9.07 kcal/mol@LB@Hybridization Energy -12.9926 kcal/mol@LB@Unfolding Energy - mRNA 3.83118 kcal/mol@LB@Unfolding Energy - sRNA 4.58338 kcal/mol@LB@@LB@Position - mRNA 44 -- 68@LB@Position - sRNA 85 -- 107@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 63 -- 69@LB@ |
174 |
0.008073 |
0.1751 |
bsu36350 |
ywpD |
-6.29 |
0.883503 |
121 -- 192 |
80 -- 160 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 16740923; Product type prc : receptor' |
|
_____________120___________________________________193\n_____________|_____________________________________|\n5'-GAC...UCGUU______AAA_______________CGGU_____G___UGAAG...GAG-3'\n______________UCAACA___GCGU____AUUGUCC____GCAAG__CC\n______________||||||___:|:|____|||||||____|||||__||\n______________AGUUGU___UGUA____UAACAGG____CGUUC__GG\n3'-AUU...GAAGU______CC_____ACUG_______CGU______AA__UAUAU...CAA-5'\n_____________|_____________________________________|\n_____________161___________________________________79\n |
134 -- 140 |
138 -- 144 |
-24.1445 kcal/mol |
6.42035 kcal/mol |
10.3237 kcal/mol |
120 193@LB@ | |@LB@5'-GAC...UCGUU AAA CGGU G UGAAG...GAG-3'@LB@ UCAACA GCGU AUUGUCC GCAAG CC@LB@ |||||| :|:| ||||||| ||||| ||@LB@ AGUUGU UGUA UAACAGG CGUUC GG@LB@3'-AUU...GAAGU CC ACUG CGU AA UAUAU...CAA-5'@LB@ | |@LB@ 161 79@LB@@LB@@LB@Energy -6.29 kcal/mol@LB@Hybridization Energy -24.1445 kcal/mol@LB@Unfolding Energy - mRNA 6.42035 kcal/mol@LB@Unfolding Energy - sRNA 10.3237 kcal/mol@LB@@LB@Position - mRNA 121 -- 192@LB@Position - sRNA 80 -- 160@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 138 -- 144@LB@ |
175 |
0.008121 |
0.1751 |
bsu19160 |
yocC |
-10.77 |
0.229075 |
5 -- 48 |
34 -- 79 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________4_________________________________________________49\n_____________|_________________________________________________|\n_______5'-UAAU___U_____AAUG___U________________CG_______CUU____ACAGG...UAU-3'\n______________UUG_UAAUC_____AA_CAAUCG___CCA_UUC__AUUCCUC___UUUC\n______________|||_:||||_____||_||||||___|||_:||__|||||:|___||||\n______________AAC_GUUAG_____UU_GUUAGC___GGU_GAG__UAAGGGG___AAAG\n3'-AUU...GAAGC_________AACCG__U______AUG___A___AA_______U______AAACU...CAA-5'\n_____________|_________________________________________________|\n_____________80________________________________________________33\n |
35 -- 41 |
39 -- 45 |
-25.1951 kcal/mol |
3.86331 kcal/mol |
13.8007 kcal/mol |
4 49@LB@ | |@LB@ 5'-UAAU U AAUG U CG CUU ACAGG...UAU-3'@LB@ UUG UAAUC AA CAAUCG CCA UUC AUUCCUC UUUC@LB@ ||| :|||| || |||||| ||| :|| |||||:| ||||@LB@ AAC GUUAG UU GUUAGC GGU GAG UAAGGGG AAAG@LB@3'-AUU...GAAGC AACCG U AUG A AA U AAACU...CAA-5'@LB@ | |@LB@ 80 33@LB@@LB@@LB@Energy -10.77 kcal/mol@LB@Hybridization Energy -25.1951 kcal/mol@LB@Unfolding Energy - mRNA 3.86331 kcal/mol@LB@Unfolding Energy - sRNA 13.8007 kcal/mol@LB@@LB@Position - mRNA 5 -- 48@LB@Position - sRNA 34 -- 79@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 39 -- 45@LB@ |
176 |
0.008122 |
0.1751 |
bsu16520 |
frr |
-16.32 |
0.017549 |
85 -- 113 |
136 -- 167 |
ribosome-recycling factor |
|
_____________84________________________________114\n_____________|_________________________________|\n5'-AGA...GCUUC_____________U_____A_____________UUAUC...AUC-3'\n______________CUCUUUAU__GCA_GGACA_UGACAU__UCCGC\n______________|||||:||__:||_|||||_||||||__|||||\n______________GAGAAGUA__UGU_CCUGU_ACUGUA__AGGCG\n3'-AUU...AAAAU________GU_________A______AC_____UCGUU...CAA-5'\n_____________|_________________________________|\n_____________168_______________________________135\n |
86 -- 92 |
160 -- 166 |
-32.0013 kcal/mol |
8.50527 kcal/mol |
7.50175 kcal/mol |
84 114@LB@ | |@LB@5'-AGA...GCUUC U A UUAUC...AUC-3'@LB@ CUCUUUAU GCA GGACA UGACAU UCCGC@LB@ |||||:|| :|| ||||| |||||| |||||@LB@ GAGAAGUA UGU CCUGU ACUGUA AGGCG@LB@3'-AUU...AAAAU GU A AC UCGUU...CAA-5'@LB@ | |@LB@ 168 135@LB@@LB@@LB@Energy -16.32 kcal/mol@LB@Hybridization Energy -32.0013 kcal/mol@LB@Unfolding Energy - mRNA 8.50527 kcal/mol@LB@Unfolding Energy - sRNA 7.50175 kcal/mol@LB@@LB@Position - mRNA 85 -- 113@LB@Position - sRNA 136 -- 167@LB@Position Seed - mRNA 86 -- 92@LB@Position Seed - sRNA 160 -- 166@LB@ |
177 |
0.008148 |
0.1751 |
bsu37320 |
narK |
-12.38 |
0.113512 |
147 -- 292 |
34 -- 178 |
nitrite extrusion protein |
|
_____________146________________________________________________________________________________________________________________________________________________________293\n_____________|__________________________________________________________________________________________________________________________________________________________|\n5'-CAA...UUGGC__G_______AU____A___UGAUU_____AU_____AAA_G___________A_____CAACC__CAA___A___AA_____G___C___CAUUAA______G__G___________UU______UGG_____G_________CA________CCAAAUCA-3'\n______________UA_UUUUUGU__GAUA_GAC_____AUUGA__CAUUG___G_GGCAAG__CCA_AUGAU_____GU___CAC_UUC__UUAUC_UUA_AGU________GCUU_GU_GCAG____GGU__AUGGUU___GUGCU_AUUUC__AU__CUCAUUUC\n______________||_|:||::|__:|:|_|||_____|||||__|||||___|_:|||||__|||_||:||_____||___|||_|||__|:|||_|:|_|||________||||_||_|||:____||:__|:::|:___||:|:_||:||__||__|:||||||\n______________AU_AGAAGUA__UUGU_CUG_____UAACU__GUAAC___C_UCGUUC__GGU_UAUUA_____CA___GUG_AAG__AGUAG_AGU_UCA________CGAA_CA_CGUU____CCG__UGUUAG___CAUGG_UAGAG__UA__GGGUAAAG\n3'-AUU...AAAAA__G_______G_____C____________________AGG_G______AA___A____________ACA___A__________A___U___UUACUUAC____G__A____AGAA___UU______________G_____AA__AG________AAACU...CAA-5'\n_____________|__________________________________________________________________________________________________________________________________________________________|\n_____________179________________________________________________________________________________________________________________________________________________________33\n |
286 -- 292 |
34 -- 40 |
-71.0788 kcal/mol |
32.1142 kcal/mol |
31.2836 kcal/mol |
146 293@LB@ | |@LB@5'-CAA...UUGGC G AU A UGAUU AU AAA G A CAACC CAA A AA G C CAUUAA G G UU UGG G CA CCAAAUCA-3'@LB@ UA UUUUUGU GAUA GAC AUUGA CAUUG G GGCAAG CCA AUGAU GU CAC UUC UUAUC UUA AGU GCUU GU GCAG GGU AUGGUU GUGCU AUUUC AU CUCAUUUC@LB@ || |:||::| :|:| ||| ||||| ||||| | :||||| ||| ||:|| || ||| ||| |:||| |:| ||| |||| || |||: ||: |:::|: ||:|: ||:|| || |:||||||@LB@ AU AGAAGUA UUGU CUG UAACU GUAAC C UCGUUC GGU UAUUA CA GUG AAG AGUAG AGU UCA CGAA CA CGUU CCG UGUUAG CAUGG UAGAG UA GGGUAAAG@LB@3'-AUU...AAAAA G G C AGG G AA A ACA A A U UUACUUAC G A AGAA UU G AA AG AAACU...CAA-5'@LB@ | |@LB@ 179 33@LB@@LB@@LB@Energy -12.38 kcal/mol@LB@Hybridization Energy -71.0788 kcal/mol@LB@Unfolding Energy - mRNA 32.1142 kcal/mol@LB@Unfolding Energy - sRNA 31.2836 kcal/mol@LB@@LB@Position - mRNA 147 -- 292@LB@Position - sRNA 34 -- 178@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 34 -- 40@LB@ |
178 |
0.008149 |
0.1751 |
bsu39610 |
yxeB |
-9.68 |
0.354141 |
1 -- 23 |
37 -- 58 |
iron(3+)-hydroxamate-binding protein YxeB |
bsu33320 |
_____________0_______24\n_____________|_______|\n5'-GCA...UGUAA_______AUUUU...CUG-3'\n______________UUCCCAU\n______________|:|||||\n______________AGGGGUA\n3'-AUU...GAAUA_______AAGAA...CAA-5'\n_____________|_______|\n_____________59______36\n |
17 -- 23 |
37 -- 43 |
-9.25042 kcal/mol |
0.0358808 kcal/mol |
2.53706 kcal/mol |
0 24@LB@ | |@LB@5'-GCA...UGUAA AUUUU...CUG-3'@LB@ UUCCCAU@LB@ |:|||||@LB@ AGGGGUA@LB@3'-AUU...GAAUA AAGAA...CAA-5'@LB@ | |@LB@ 59 36@LB@@LB@@LB@Energy -9.68 kcal/mol@LB@Hybridization Energy -9.25042 kcal/mol@LB@Unfolding Energy - mRNA 0.0358808 kcal/mol@LB@Unfolding Energy - sRNA 2.53706 kcal/mol@LB@@LB@Position - mRNA 1 -- 23@LB@Position - sRNA 37 -- 58@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 37 -- 43@LB@ |
179 |
0.008166 |
0.1751 |
bsu40550 |
ppaC |
-16.23 |
0.018315 |
37 -- 106 |
8 -- 74 |
manganese-dependent inorganic pyrophosphatase |
|
_____________36_______________________________________________________________________107\n_____________|________________________________________________________________________|\n5'-GAC...AUUAC__________C____________GUA_____CACA__U_____CCUUAGCUCAAA__________CUUA___ACAUC...AUG-3'\n______________AUUUU_GCAA_UAAUC_UACCCA___UUUUA____CC_UUUCU____________GAAAAUGCUU____UUC\n______________||:||_||||_:||||_||||||___|:|||____||_|||||____________|||||:||||____|||\n______________UAGAA_CGUU_GUUAG_AUGGGU___AGAAU____GG_AAAGA____________CUUUUGCGAA____AAG\n3'-AUU...AACGU_____C____U_____C______AG______AAGG__U_____AACUUUAAA_____________UUA____AAAACAA-5'\n_____________|________________________________________________________________________|\n_____________75_______________________________________________________________________7\n |
93 -- 99 |
14 -- 20 |
-36.8068 kcal/mol |
5.4197 kcal/mol |
15.7808 kcal/mol |
36 107@LB@ | |@LB@5'-GAC...AUUAC C GUA CACA U CCUUAGCUCAAA CUUA ACAUC...AUG-3'@LB@ AUUUU GCAA UAAUC UACCCA UUUUA CC UUUCU GAAAAUGCUU UUC@LB@ ||:|| |||| :|||| |||||| |:||| || ||||| |||||:|||| |||@LB@ UAGAA CGUU GUUAG AUGGGU AGAAU GG AAAGA CUUUUGCGAA AAG@LB@3'-AUU...AACGU C U C AG AAGG U AACUUUAAA UUA AAAACAA-5'@LB@ | |@LB@ 75 7@LB@@LB@@LB@Energy -16.23 kcal/mol@LB@Hybridization Energy -36.8068 kcal/mol@LB@Unfolding Energy - mRNA 5.4197 kcal/mol@LB@Unfolding Energy - sRNA 15.7808 kcal/mol@LB@@LB@Position - mRNA 37 -- 106@LB@Position - sRNA 8 -- 74@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 14 -- 20@LB@ |
180 |
0.008222 |
0.1751 |
bsu14560 |
def |
-9.11 |
0.436669 |
135 -- 145 |
75 -- 85 |
peptide deformylase |
|
_____________134_________146\n_____________|___________|\n5'-UGG...CAUUC___________CCUUU...AGC-3'\n______________GUUUCGUUGCA\n______________|:|||||||||\n______________CGAAGCAACGU\n3'-AUU...CUUAC___________UAGAA...CAA-5'\n_____________|___________|\n_____________86__________74\n |
139 -- 145 |
75 -- 81 |
-16.022 kcal/mol |
4.21993 kcal/mol |
4.54464 kcal/mol |
134 146@LB@ | |@LB@5'-UGG...CAUUC CCUUU...AGC-3'@LB@ GUUUCGUUGCA@LB@ |:|||||||||@LB@ CGAAGCAACGU@LB@3'-AUU...CUUAC UAGAA...CAA-5'@LB@ | |@LB@ 86 74@LB@@LB@@LB@Energy -9.11 kcal/mol@LB@Hybridization Energy -16.022 kcal/mol@LB@Unfolding Energy - mRNA 4.21993 kcal/mol@LB@Unfolding Energy - sRNA 4.54464 kcal/mol@LB@@LB@Position - mRNA 135 -- 145@LB@Position - sRNA 75 -- 85@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 75 -- 81@LB@ |
181 |
0.008392 |
0.1751 |
bsu19600 |
yodH |
-10.70 |
0.236480 |
130 -- 154 |
156 -- 183 |
methyltransferase |
|
_____________129______________155\n_____________|________________|\n5'-AAC...CUUCU____________A___CUAUG...CCU-3'\n______________UUUGCUUUUCAU_AAC\n______________|||:||:|||||_|||\n______________AAAUGAGAAGUA_UUG\n3'-AUU...AAAAA____________G___UCCUG...CAA-5'\n_____________|________________|\n_____________184______________155\n |
144 -- 150 |
160 -- 166 |
-13.2566 kcal/mol |
3.14685 kcal/mol |
1.41519 kcal/mol |
129 155@LB@ | |@LB@5'-AAC...CUUCU A CUAUG...CCU-3'@LB@ UUUGCUUUUCAU AAC@LB@ |||:||:||||| |||@LB@ AAAUGAGAAGUA UUG@LB@3'-AUU...AAAAA G UCCUG...CAA-5'@LB@ | |@LB@ 184 155@LB@@LB@@LB@Energy -10.70 kcal/mol@LB@Hybridization Energy -13.2566 kcal/mol@LB@Unfolding Energy - mRNA 3.14685 kcal/mol@LB@Unfolding Energy - sRNA 1.41519 kcal/mol@LB@@LB@Position - mRNA 130 -- 154@LB@Position - sRNA 156 -- 183@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 160 -- 166@LB@ |
182 |
0.008397 |
0.1751 |
bsu38410 |
sacX |
-16.96 |
0.012854 |
69 -- 151 |
101 -- 169 |
negative regulator of SacY activity |
|
_____________68_____________________________________________________________________________________152\n_____________|______________________________________________________________________________________|\n5'-ACA...UCUCA_____CG_________C_______U________AUUUU____C___AUUUCUCACUUUU_____UU____A______AC_______UUGAU...UAA-3'\n______________UGCUC__UCGUCGACG_GGGCAUU____UUGUC_____CAGC_GGU_____________UUCAU____UG_UUGUCA__UUUUCAU\n______________|:|||__||:||:||:_||:||||____|||||_____||||_:||_____________|:|||____||_||||||__||:||||\n______________AUGAG__AGUAGUUGU_CCUGUAA____AACAG_____GUCG_UCA_____________AGGUA____AC_AACAGU__AAGAGUA\n3'-AUU...AAAAA_____A__________________CUGU_____GC_______U_____________________UAUU_________GA_______GAAGU...CAA-5'\n_____________|______________________________________________________________________________________|\n_____________170____________________________________________________________________________________100\n |
143 -- 149 |
103 -- 109 |
-47.5037 kcal/mol |
18.4019 kcal/mol |
14.5039 kcal/mol |
68 152@LB@ | |@LB@5'-ACA...UCUCA CG C U AUUUU C AUUUCUCACUUUU UU A AC UUGAU...UAA-3'@LB@ UGCUC UCGUCGACG GGGCAUU UUGUC CAGC GGU UUCAU UG UUGUCA UUUUCAU@LB@ |:||| ||:||:||: ||:|||| ||||| |||| :|| |:||| || |||||| ||:||||@LB@ AUGAG AGUAGUUGU CCUGUAA AACAG GUCG UCA AGGUA AC AACAGU AAGAGUA@LB@3'-AUU...AAAAA A CUGU GC U UAUU GA GAAGU...CAA-5'@LB@ | |@LB@ 170 100@LB@@LB@@LB@Energy -16.96 kcal/mol@LB@Hybridization Energy -47.5037 kcal/mol@LB@Unfolding Energy - mRNA 18.4019 kcal/mol@LB@Unfolding Energy - sRNA 14.5039 kcal/mol@LB@@LB@Position - mRNA 69 -- 151@LB@Position - sRNA 101 -- 169@LB@Position Seed - mRNA 143 -- 149@LB@Position Seed - sRNA 103 -- 109@LB@ |
183 |
0.008402 |
0.1751 |
bsu03010 |
amhX |
-13.44 |
0.069669 |
23 -- 92 |
7 -- 86 |
amidohydrolase AmhX |
|
_____________22_______________________________________________________________________________________93\n_____________|________________________________________________________________________________________|\n5'-AAA...UCUUA____G____U______GC____________________AU___GAUCCA__________________________A______UA____GAAUA...CUU-3'\n______________GGCU_UGUU_CGG_CU__UGGCA________UACUCAU__UUC______UCCCC___UCU_____GUUUGAAAAU__UUAAU__UUCU\n______________||||_:|||_|::_||__|||||________|||:|||__:||______|||||___|||_____:||||||||:__|||||__||||\n______________CCGA_GCAA_GUU_GA__ACCGU________AUGGGUA__GAG______AGGGG___AGA_____UAAACUUUUG__AAUUA__AAGA\n3'-AUU...ACUUA____A____C___A_________UUGUUAGC____________AAUA_______UAA___AACUU__________CG___________AAACAA-5'\n_____________|________________________________________________________________________________________|\n_____________87_______________________________________________________________________________________6\n |
45 -- 51 |
51 -- 57 |
-41.3184 kcal/mol |
11.5757 kcal/mol |
17.8015 kcal/mol |
22 93@LB@ | |@LB@5'-AAA...UCUUA G U GC AU GAUCCA A UA GAAUA...CUU-3'@LB@ GGCU UGUU CGG CU UGGCA UACUCAU UUC UCCCC UCU GUUUGAAAAU UUAAU UUCU@LB@ |||| :||| |:: || ||||| |||:||| :|| ||||| ||| :||||||||: ||||| ||||@LB@ CCGA GCAA GUU GA ACCGU AUGGGUA GAG AGGGG AGA UAAACUUUUG AAUUA AAGA@LB@3'-AUU...ACUUA A C A UUGUUAGC AAUA UAA AACUU CG AAACAA-5'@LB@ | |@LB@ 87 6@LB@@LB@@LB@Energy -13.44 kcal/mol@LB@Hybridization Energy -41.3184 kcal/mol@LB@Unfolding Energy - mRNA 11.5757 kcal/mol@LB@Unfolding Energy - sRNA 17.8015 kcal/mol@LB@@LB@Position - mRNA 23 -- 92@LB@Position - sRNA 7 -- 86@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 51 -- 57@LB@ |
184 |
0.008461 |
0.1751 |
bsu09120 |
dgcK |
-13.04 |
0.083992 |
38 -- 184 |
37 -- 168 |
diguanylate cyclase |
|
_____________37______________________________________185\n_____________|_______________________________________|\n5'-CAU...AAGUC___AA_______AAACUCUCCCUUCAA____________UACUA...GCA-3'\n______________UCC__AGCAGGU________________AUUUUCUCAUU\n______________|||__||||:||________________|:||||||||:\n______________AGG__UCGUUCA________________UGAAAGAGUAG\n3'-AUU...GUAAC___CG_______AGGUAUAUUACAACAG___________AAGUU...CAA-5'\n_____________|_______________________________________|\n_____________169_____________________________________36\n |
55 -- 61 |
102 -- 108 |
-22.9941 kcal/mol |
2.75938 kcal/mol |
10.7301 kcal/mol |
37 185@LB@ | |@LB@5'-CAU...AAGUC AA AAACUCUCCCUUCAA UACUA...GCA-3'@LB@ UCC AGCAGGU AUUUUCUCAUU@LB@ ||| ||||:|| |:||||||||:@LB@ AGG UCGUUCA UGAAAGAGUAG@LB@3'-AUU...GUAAC CG AGGUAUAUUACAACAG AAGUU...CAA-5'@LB@ | |@LB@ 169 36@LB@@LB@@LB@Energy -13.04 kcal/mol@LB@Hybridization Energy -22.9941 kcal/mol@LB@Unfolding Energy - mRNA 2.75938 kcal/mol@LB@Unfolding Energy - sRNA 10.7301 kcal/mol@LB@@LB@Position - mRNA 38 -- 184@LB@Position - sRNA 37 -- 168@LB@Position Seed - mRNA 55 -- 61@LB@Position Seed - sRNA 102 -- 108@LB@ |
185 |
0.008526 |
0.1751 |
bsu02370 |
ybgA |
-10.25 |
0.283898 |
252 -- 276 |
59 -- 82 |
GntR family transcriptional regulator |
|
_____________251_________________________277\n_____________|___________________________|\n5'-GAU...UUAAA___G____AAU___A____________AGCUG...UUU-3'\n______________UCG__GCA___AUC__GGCGAAUGAUC\n______________|||__|||___|||__|||:||::|||\n______________AGC__CGU___UAG__CCGUUUGUUAG\n3'-AUU...ACCGA___AA_________AA___________CAUGG...CAA-5'\n_____________|___________________________|\n_____________83__________________________58\n |
266 -- 272 |
63 -- 69 |
-19.3785 kcal/mol |
3.33361 kcal/mol |
6.42004 kcal/mol |
251 277@LB@ | |@LB@5'-GAU...UUAAA G AAU A AGCUG...UUU-3'@LB@ UCG GCA AUC GGCGAAUGAUC@LB@ ||| ||| ||| |||:||::|||@LB@ AGC CGU UAG CCGUUUGUUAG@LB@3'-AUU...ACCGA AA AA CAUGG...CAA-5'@LB@ | |@LB@ 83 58@LB@@LB@@LB@Energy -10.25 kcal/mol@LB@Hybridization Energy -19.3785 kcal/mol@LB@Unfolding Energy - mRNA 3.33361 kcal/mol@LB@Unfolding Energy - sRNA 6.42004 kcal/mol@LB@@LB@Position - mRNA 252 -- 276@LB@Position - sRNA 59 -- 82@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 63 -- 69@LB@ |
186 |
0.00854 |
0.1751 |
bsu03320 |
nasB |
-11.11 |
0.199178 |
25 -- 36 |
33 -- 45 |
assimilatory nitrate reductase electron transfer subunit |
bsu03300 |
_____________24____________37\n_____________|_____________|\n5'-UUU...AUAAG_____________AGACC...UCA-3'\n______________AUUCCCC_UUUCU\n______________|||||||_|||||\n______________UAAGGGG_AAAGA\n3'-AUU...GAGAA_______U_____AACUU...CAA-5'\n_____________|_____________|\n_____________46____________32\n |
25 -- 31 |
39 -- 45 |
-15.5675 kcal/mol |
1.76448 kcal/mol |
4.94568 kcal/mol |
24 37@LB@ | |@LB@5'-UUU...AUAAG AGACC...UCA-3'@LB@ AUUCCCC UUUCU@LB@ ||||||| |||||@LB@ UAAGGGG AAAGA@LB@3'-AUU...GAGAA U AACUU...CAA-5'@LB@ | |@LB@ 46 32@LB@@LB@@LB@Energy -11.11 kcal/mol@LB@Hybridization Energy -15.5675 kcal/mol@LB@Unfolding Energy - mRNA 1.76448 kcal/mol@LB@Unfolding Energy - sRNA 4.94568 kcal/mol@LB@@LB@Position - mRNA 25 -- 36@LB@Position - sRNA 33 -- 45@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 39 -- 45@LB@ |
187 |
0.008608 |
0.1751 |
bsu17960 |
yneK |
-9.96 |
0.317804 |
143 -- 172 |
155 -- 184 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________142___________173\n_____________|_____________|\n5'-AGU...AAUCU________AU___AUAUG...UAA-3'\n______________CUCUUCGU__ACA\n______________||||||:|__|||\n______________GAGAAGUA__UGU\n3'-AUU...AAAAU________GU___CCUGU...CAA-5'\n_____________|_____________|\n_____________185___________154\n |
161 -- 167 |
160 -- 166 |
-12.096 kcal/mol |
1.39305 kcal/mol |
1.41024 kcal/mol |
142 173@LB@ | |@LB@5'-AGU...AAUCU AU AUAUG...UAA-3'@LB@ CUCUUCGU ACA@LB@ ||||||:| |||@LB@ GAGAAGUA UGU@LB@3'-AUU...AAAAU GU CCUGU...CAA-5'@LB@ | |@LB@ 185 154@LB@@LB@@LB@Energy -9.96 kcal/mol@LB@Hybridization Energy -12.096 kcal/mol@LB@Unfolding Energy - mRNA 1.39305 kcal/mol@LB@Unfolding Energy - sRNA 1.41024 kcal/mol@LB@@LB@Position - mRNA 143 -- 172@LB@Position - sRNA 155 -- 184@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 160 -- 166@LB@ |
188 |
0.008618 |
0.1751 |
bsu31720 |
degQ |
-9.47 |
0.382925 |
276 -- 300 |
147 -- 170 |
degradation enzyme regulation protein DegQ |
|
_____________275______________301\n_____________|________________|\n5'-GAA...AUUCA____GAAA________AAAGC...UUG-3'\n______________UUAC____CAUUAACA\n______________||||____|||:||||\n______________AAUG____GUAGUUGU\n3'-AUU...AAAAA____AGAA________CCUGU...CAA-5'\n_____________|________________|\n_____________171______________146\n |
285 -- 291 |
155 -- 161 |
-9.46814 kcal/mol |
0.995164 kcal/mol |
1.41808 kcal/mol |
275 301@LB@ | |@LB@5'-GAA...AUUCA GAAA AAAGC...UUG-3'@LB@ UUAC CAUUAACA@LB@ |||| |||:||||@LB@ AAUG GUAGUUGU@LB@3'-AUU...AAAAA AGAA CCUGU...CAA-5'@LB@ | |@LB@ 171 146@LB@@LB@@LB@Energy -9.47 kcal/mol@LB@Hybridization Energy -9.46814 kcal/mol@LB@Unfolding Energy - mRNA 0.995164 kcal/mol@LB@Unfolding Energy - sRNA 1.41808 kcal/mol@LB@@LB@Position - mRNA 276 -- 300@LB@Position - sRNA 147 -- 170@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 155 -- 161@LB@ |
189 |
0.008686 |
0.1751 |
bsu03110 |
ycgH |
-10.16 |
0.294825 |
102 -- 123 |
120 -- 141 |
transporter |
|
_____________101____________________124\n_____________|______________________|\n5'-UUU...UGAGC______UUCCUUC_________AAAGA...UCG-3'\n______________GUCUGC_______UCCAUGUAA\n______________|||:||_______|||||:|||\n______________CAGGCG_______AGGUAUAUU\n3'-AUU...UGUAA______UCGUUCA_________ACAAC...CAA-5'\n_____________|______________________|\n_____________142____________________119\n |
117 -- 123 |
120 -- 126 |
-19.5867 kcal/mol |
5.23504 kcal/mol |
6.76593 kcal/mol |
101 124@LB@ | |@LB@5'-UUU...UGAGC UUCCUUC AAAGA...UCG-3'@LB@ GUCUGC UCCAUGUAA@LB@ |||:|| |||||:|||@LB@ CAGGCG AGGUAUAUU@LB@3'-AUU...UGUAA UCGUUCA ACAAC...CAA-5'@LB@ | |@LB@ 142 119@LB@@LB@@LB@Energy -10.16 kcal/mol@LB@Hybridization Energy -19.5867 kcal/mol@LB@Unfolding Energy - mRNA 5.23504 kcal/mol@LB@Unfolding Energy - sRNA 6.76593 kcal/mol@LB@@LB@Position - mRNA 102 -- 123@LB@Position - sRNA 120 -- 141@LB@Position Seed - mRNA 117 -- 123@LB@Position Seed - sRNA 120 -- 126@LB@ |
190 |
0.008698 |
0.1751 |
bsu19130 |
yocA |
-15.61 |
0.024807 |
4 -- 94 |
40 -- 127 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type h: extrachromosomal origin' |
|
_____________3___________________________________________________________________________________________________95\n_____________|___________________________________________________________________________________________________|\n________5'-CAG_______UA_______C_______UA_____U___UUUAUCUUAUAACAAA__________AGU______CA_________________A_________AAUCU...ACC-3'\n______________UCAUAUG______UCA_CUUUCUU___UUCA_AGU________________UGCG__CUUG___GCAAAC______GCCUG___CUUGU_UUCCAUUUC\n______________:|||||:______|||_||||||:___||||_|||________________|||:__||||___||||||______:||::___|||:|_::|||||||\n______________GGUAUAU______AGU_GAAAGAG___AAGU_UCA________________ACGU__GAAC___CGUUUG______UGGGU___GAAUA_GGGGUAAAG\n3'-AUU...UUCAA_______UACAAC___________UAG____U___UUACUUACCGAAGCA_____UA_____________UUAGCA_____AGA_____A_________AAACU...CAA-5'\n_____________|___________________________________________________________________________________________________|\n_____________128_________________________________________________________________________________________________39\n |
82 -- 88 |
34 -- 40 |
-43.0073 kcal/mol |
9.62595 kcal/mol |
23.221 kcal/mol |
3 95@LB@ | |@LB@ 5'-CAG UA C UA U UUUAUCUUAUAACAAA AGU CA A AAUCU...ACC-3'@LB@ UCAUAUG UCA CUUUCUU UUCA AGU UGCG CUUG GCAAAC GCCUG CUUGU UUCCAUUUC@LB@ :|||||: ||| ||||||: |||| ||| |||: |||| |||||| :||:: |||:| ::|||||||@LB@ GGUAUAU AGU GAAAGAG AAGU UCA ACGU GAAC CGUUUG UGGGU GAAUA GGGGUAAAG@LB@3'-AUU...UUCAA UACAAC UAG U UUACUUACCGAAGCA UA UUAGCA AGA A AAACU...CAA-5'@LB@ | |@LB@ 128 39@LB@@LB@@LB@Energy -15.61 kcal/mol@LB@Hybridization Energy -43.0073 kcal/mol@LB@Unfolding Energy - mRNA 9.62595 kcal/mol@LB@Unfolding Energy - sRNA 23.221 kcal/mol@LB@@LB@Position - mRNA 4 -- 94@LB@Position - sRNA 40 -- 127@LB@Position Seed - mRNA 82 -- 88@LB@Position Seed - sRNA 34 -- 40@LB@ |
191 |
0.008727 |
0.1751 |
bsu31280 |
yugU |
-11.72 |
0.152832 |
2 -- 31 |
120 -- 152 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________1___________________________________32\n_____________|___________________________________|\n__________5'-A_______AA__GA______________________CAUCA...GCG-3'\n______________AUAUUGA__CA__G_CCGCA_CAAG___CAUAUGA\n______________|:|||||__||__|_|||||_||||___|||||:|\n______________UGUAACU__GU__C_GGCGU_GUUC___GUAUAUU\n3'-AUU...UGUCC___________AA_A_____C____AAG_______ACAAC...CAA-5'\n_____________|___________________________________|\n_____________153_________________________________119\n |
25 -- 31 |
120 -- 126 |
-21.956 kcal/mol |
3.20784 kcal/mol |
9.17624 kcal/mol |
1 32@LB@ | |@LB@ 5'-A AA GA CAUCA...GCG-3'@LB@ AUAUUGA CA G CCGCA CAAG CAUAUGA@LB@ |:||||| || | ||||| |||| |||||:|@LB@ UGUAACU GU C GGCGU GUUC GUAUAUU@LB@3'-AUU...UGUCC AA A C AAG ACAAC...CAA-5'@LB@ | |@LB@ 153 119@LB@@LB@@LB@Energy -11.72 kcal/mol@LB@Hybridization Energy -21.956 kcal/mol@LB@Unfolding Energy - mRNA 3.20784 kcal/mol@LB@Unfolding Energy - sRNA 9.17624 kcal/mol@LB@@LB@Position - mRNA 2 -- 31@LB@Position - sRNA 120 -- 152@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 120 -- 126@LB@ |
192 |
0.00876 |
0.1751 |
bsu33520 |
csoR |
-16.67 |
0.014798 |
32 -- 56 |
39 -- 62 |
copper-sensing transcriptional repressor CsoR |
|
_____________31_________________________57\n_____________|__________________________|\n5'-CGG...ACCUU___________CU______C______UUUAA...GAG-3'\n______________GAUCGUAUCCA__UUUCUU__UCCCC\n______________:||||||:|||__|:||||__|||||\n______________UUAGCAUGGGU__AGAGAA__AGGGG\n3'-AUU...GUUUG___________________UA_____UAAAG...CAA-5'\n_____________|__________________________|\n_____________63_________________________38\n |
33 -- 39 |
55 -- 61 |
-27.3317 kcal/mol |
3.5392 kcal/mol |
9.04037 kcal/mol |
31 57@LB@ | |@LB@5'-CGG...ACCUU CU C UUUAA...GAG-3'@LB@ GAUCGUAUCCA UUUCUU UCCCC@LB@ :||||||:||| |:|||| |||||@LB@ UUAGCAUGGGU AGAGAA AGGGG@LB@3'-AUU...GUUUG UA UAAAG...CAA-5'@LB@ | |@LB@ 63 38@LB@@LB@@LB@Energy -16.67 kcal/mol@LB@Hybridization Energy -27.3317 kcal/mol@LB@Unfolding Energy - mRNA 3.5392 kcal/mol@LB@Unfolding Energy - sRNA 9.04037 kcal/mol@LB@@LB@Position - mRNA 32 -- 56@LB@Position - sRNA 39 -- 62@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 55 -- 61@LB@ |
193 |
0.008782 |
0.1751 |
bsu13160 |
ohrB |
-9.78 |
0.341127 |
32 -- 61 |
100 -- 129 |
organic hydroperoxide resistance protein OhrB |
|
_____________31_________62\n_____________|__________|\n5'-CAU...GGACG__________AUUAC...AUG-3'\n______________AGCAGGACAU\n______________|:||||||||\n______________UUGUCCUGUA\n3'-AUU...AGUAG__________ACUGU...CAA-5'\n_____________|__________|\n_____________130________99\n |
245 -- 251 |
149 -- 155 |
-15.2334 kcal/mol |
1.87143 kcal/mol |
5.55277 kcal/mol |
31 62@LB@ | |@LB@5'-CAU...GGACG AUUAC...AUG-3'@LB@ AGCAGGACAU@LB@ |:||||||||@LB@ UUGUCCUGUA@LB@3'-AUU...AGUAG ACUGU...CAA-5'@LB@ | |@LB@ 130 99@LB@@LB@@LB@Energy -9.78 kcal/mol@LB@Hybridization Energy -15.2334 kcal/mol@LB@Unfolding Energy - mRNA 1.87143 kcal/mol@LB@Unfolding Energy - sRNA 5.55277 kcal/mol@LB@@LB@Position - mRNA 32 -- 61@LB@Position - sRNA 100 -- 129@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 149 -- 155@LB@ |
194 |
0.008808 |
0.1751 |
bsu16370 |
fliR |
-9.70 |
0.351361 |
227 -- 250 |
157 -- 179 |
flagellar biosynthetic protein FliR |
|
_____________226____________________________________251\n_____________|______________________________________|\n5'-UAU...CGACA____AA____CAGG________U________UAU____AAAAU...UGC-3'\n______________ACUC___AUC____AACA_GAC_UUGGCGUU___UCCG\n______________||||___|||____||||_|||_|||:|:||___||||\n______________UGAG___UAG____UUGU_CUG_AACUGUAA___AGGC\n3'-AUU...AAAAA____AAG___________C___U________C______GUCGU...CAA-5'\n_____________|______________________________________|\n_____________180____________________________________156\n |
69 -- 75 |
142 -- 148 |
-23.642 kcal/mol |
8.17018 kcal/mol |
7.49537 kcal/mol |
226 251@LB@ | |@LB@5'-UAU...CGACA AA CAGG U UAU AAAAU...UGC-3'@LB@ ACUC AUC AACA GAC UUGGCGUU UCCG@LB@ |||| ||| |||| ||| |||:|:|| ||||@LB@ UGAG UAG UUGU CUG AACUGUAA AGGC@LB@3'-AUU...AAAAA AAG C U C GUCGU...CAA-5'@LB@ | |@LB@ 180 156@LB@@LB@@LB@Energy -9.70 kcal/mol@LB@Hybridization Energy -23.642 kcal/mol@LB@Unfolding Energy - mRNA 8.17018 kcal/mol@LB@Unfolding Energy - sRNA 7.49537 kcal/mol@LB@@LB@Position - mRNA 227 -- 250@LB@Position - sRNA 157 -- 179@LB@Position Seed - mRNA 69 -- 75@LB@Position Seed - sRNA 142 -- 148@LB@ |
195 |
0.008951 |
0.1751 |
bsu05080 |
yddR |
-8.99 |
0.454521 |
34 -- 81 |
5 -- 51 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type pe: enzyme' |
|
_____________33________________________________________________82\n_____________|_________________________________________________|\n5'-AUC...UAAUU_____AUA_________C_G_____UCUAUUU____________C____CGAAA...CUA-3'\n______________UCUCU___AUUUUUUAU_U_UUUGA_______GAACGUU_AAUU_CUUU\n______________|||||___|||::::||_|_|||||_______:||||:|_||||_||||\n______________AGAGA___UAAGGGGUA_A_AAACU_______UUUGCGA_UUAA_GAAA\n3'-AUU...UGGGU_____A___________A_G_____UUAAACU_______A____A____ACAA-5'\n_____________|_________________________________________________|\n_____________52________________________________________________4\n |
66 -- 72 |
15 -- 21 |
-22.8936 kcal/mol |
6.26634 kcal/mol |
10.4335 kcal/mol |
33 82@LB@ | |@LB@5'-AUC...UAAUU AUA C G UCUAUUU C CGAAA...CUA-3'@LB@ UCUCU AUUUUUUAU U UUUGA GAACGUU AAUU CUUU@LB@ ||||| |||::::|| | ||||| :||||:| |||| ||||@LB@ AGAGA UAAGGGGUA A AAACU UUUGCGA UUAA GAAA@LB@3'-AUU...UGGGU A A G UUAAACU A A ACAA-5'@LB@ | |@LB@ 52 4@LB@@LB@@LB@Energy -8.99 kcal/mol@LB@Hybridization Energy -22.8936 kcal/mol@LB@Unfolding Energy - mRNA 6.26634 kcal/mol@LB@Unfolding Energy - sRNA 10.4335 kcal/mol@LB@@LB@Position - mRNA 34 -- 81@LB@Position - sRNA 5 -- 51@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 15 -- 21@LB@ |
196 |
0.008988 |
0.1751 |
bsu24970 |
pstA |
-9.97 |
0.317060 |
128 -- 176 |
38 -- 86 |
ABC transporter permease |
|
_____________127___________________________________________________177\n_____________|_____________________________________________________|\n5'-AUU...AAUGG___________U__________UGU__U__U________CUG_______G___CUUGU...UUA-3'\n______________GGCUU_G_UGC__UC_UGGUGA___CA_UC_UGUUCAUC___CUUAUUC_CUA\n______________|||||_|_|||__||_|||::|___||_||_|:::||||___|||||||_|:|\n______________CCGAA_C_ACG__AG_ACCGUU___GU_AG_AUGGGUAG___GAAUAAG_GGU\n3'-AUU...ACUUA_____G_A___UU__A______U____U__C________A_________G___AAAGA...CAA-5'\n_____________|_____________________________________________________|\n_____________87____________________________________________________37\n |
166 -- 172 |
42 -- 48 |
-33.9261 kcal/mol |
12.9253 kcal/mol |
13.9524 kcal/mol |
127 177@LB@ | |@LB@5'-AUU...AAUGG U UGU U U CUG G CUUGU...UUA-3'@LB@ GGCUU G UGC UC UGGUGA CA UC UGUUCAUC CUUAUUC CUA@LB@ ||||| | ||| || |||::| || || |:::|||| ||||||| |:|@LB@ CCGAA C ACG AG ACCGUU GU AG AUGGGUAG GAAUAAG GGU@LB@3'-AUU...ACUUA G A UU A U U C A G AAAGA...CAA-5'@LB@ | |@LB@ 87 37@LB@@LB@@LB@Energy -9.97 kcal/mol@LB@Hybridization Energy -33.9261 kcal/mol@LB@Unfolding Energy - mRNA 12.9253 kcal/mol@LB@Unfolding Energy - sRNA 13.9524 kcal/mol@LB@@LB@Position - mRNA 128 -- 176@LB@Position - sRNA 38 -- 86@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 42 -- 48@LB@ |
197 |
0.009002 |
0.1751 |
bsu33650 |
yvzC |
-16.51 |
0.015985 |
3 -- 52 |
121 -- 172 |
HTH-type transcriptional regulator YvzC |
|
_____________2__________________________________________________53\n_____________|__________________________________________________|\n____5'-ACUUUCU_______C_____AU__CC__UA_________CAA___U___________UCUCA...UCU-3'\n______________CUCUUCA___GCA__GC___G__AUUGUUCGC___AGC___UUCCAUAUA\n______________|||||||___:||__:|___|__|||||:|||___|||___|||||||||\n______________GAGAAGU___UGU__UG___C__UAACAGGCG___UCG___AAGGUAUAU\n3'-AUU...AAAAU_______AGU___CC__UAA_UG_______________UUC_________UACAA...CAA-5'\n_____________|__________________________________________________|\n_____________173________________________________________________120\n |
46 -- 52 |
121 -- 127 |
-33.6584 kcal/mol |
6.173 kcal/mol |
10.5345 kcal/mol |
2 53@LB@ | |@LB@ 5'-ACUUUCU C AU CC UA CAA U UCUCA...UCU-3'@LB@ CUCUUCA GCA GC G AUUGUUCGC AGC UUCCAUAUA@LB@ ||||||| :|| :| | |||||:||| ||| |||||||||@LB@ GAGAAGU UGU UG C UAACAGGCG UCG AAGGUAUAU@LB@3'-AUU...AAAAU AGU CC UAA UG UUC UACAA...CAA-5'@LB@ | |@LB@ 173 120@LB@@LB@@LB@Energy -16.51 kcal/mol@LB@Hybridization Energy -33.6584 kcal/mol@LB@Unfolding Energy - mRNA 6.173 kcal/mol@LB@Unfolding Energy - sRNA 10.5345 kcal/mol@LB@@LB@Position - mRNA 3 -- 52@LB@Position - sRNA 121 -- 172@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 121 -- 127@LB@ |
198 |
0.009004 |
0.1751 |
bsu38400 |
epr |
-15.65 |
0.024309 |
91 -- 136 |
32 -- 78 |
minor extracellular protease epr |
|
_____________90________________________________________________137\n_____________|_________________________________________________|\n5'-UGU...AAAUC__________C_______C_C_______GAAAAAUU_____________ACUAU...AAG-3'\n______________UGC_AUUUUG_UAAACAA_C_UGCCCAU________UUUUCC__UUCUU\n______________|||_||:|||_:||||||_|_|:|||||________||::||__|||||\n______________ACG_UAGAAC_GUUUGUU_G_AUGGGUA________AAGGGG__AAGAA\n3'-AUU...AAGCA___U______C_______A_C_______GAGAAU________UA_____ACUUU...CAA-5'\n_____________|_________________________________________________|\n_____________79________________________________________________31\n |
111 -- 117 |
51 -- 57 |
-30.7525 kcal/mol |
4.20051 kcal/mol |
13.8985 kcal/mol |
90 137@LB@ | |@LB@5'-UGU...AAAUC C C C GAAAAAUU ACUAU...AAG-3'@LB@ UGC AUUUUG UAAACAA C UGCCCAU UUUUCC UUCUU@LB@ ||| ||:||| :|||||| | |:||||| ||::|| |||||@LB@ ACG UAGAAC GUUUGUU G AUGGGUA AAGGGG AAGAA@LB@3'-AUU...AAGCA U C A C GAGAAU UA ACUUU...CAA-5'@LB@ | |@LB@ 79 31@LB@@LB@@LB@Energy -15.65 kcal/mol@LB@Hybridization Energy -30.7525 kcal/mol@LB@Unfolding Energy - mRNA 4.20051 kcal/mol@LB@Unfolding Energy - sRNA 13.8985 kcal/mol@LB@@LB@Position - mRNA 91 -- 136@LB@Position - sRNA 32 -- 78@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 51 -- 57@LB@ |
199 |
0.00902 |
0.1751 |
bsu30990 |
thiT |
-13.50 |
0.067771 |
270 -- 291 |
126 -- 147 |
thiamine transporter ThiT |
|
_____________269_____________________292\n_____________|_______________________|\n5'-AUG...UUUUA______________G__U_____UUAGC...UGC-3'\n______________GACAUUGUCU_CAG_AA_GUUUC\n______________|||||||||:_|||_||_|||:|\n______________CUGUAACAGG_GUC_UU_CAAGG\n3'-AUU...UGUAA__________C___G________UAUAU...CAA-5'\n_____________|_______________________|\n_____________148_____________________125\n |
273 -- 279 |
138 -- 144 |
-23.3567 kcal/mol |
5.16312 kcal/mol |
6.80985 kcal/mol |
269 292@LB@ | |@LB@5'-AUG...UUUUA G U UUAGC...UGC-3'@LB@ GACAUUGUCU CAG AA GUUUC@LB@ |||||||||: ||| || |||:|@LB@ CUGUAACAGG GUC UU CAAGG@LB@3'-AUU...UGUAA C G UAUAU...CAA-5'@LB@ | |@LB@ 148 125@LB@@LB@@LB@Energy -13.50 kcal/mol@LB@Hybridization Energy -23.3567 kcal/mol@LB@Unfolding Energy - mRNA 5.16312 kcal/mol@LB@Unfolding Energy - sRNA 6.80985 kcal/mol@LB@@LB@Position - mRNA 270 -- 291@LB@Position - sRNA 126 -- 147@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 138 -- 144@LB@ |
200 |
0.009037 |
0.1751 |
bsu15760 |
prpC |
-17.37 |
0.010506 |
124 -- 148 |
133 -- 158 |
protein phosphatase PrpC |
|
_____________123_________________________149\n_____________|___________________________|\n5'-ACG...AAGAG___A_______________A_______CUGCG...UUG-3'\n______________AGC_AGGACA_UGACAUUG__CGCAGC\n______________|:|_||||||_||||||||__||||||\n______________UUG_UCCUGU_ACUGUAAC__GCGUCG\n3'-AUU...AGUAG__________A________AG______UUCAA...CAA-5'\n_____________|___________________________|\n_____________159_________________________132\n |
135 -- 141 |
141 -- 147 |
-32.4946 kcal/mol |
7.19227 kcal/mol |
8.48433 kcal/mol |
123 149@LB@ | |@LB@5'-ACG...AAGAG A A CUGCG...UUG-3'@LB@ AGC AGGACA UGACAUUG CGCAGC@LB@ |:| |||||| |||||||| ||||||@LB@ UUG UCCUGU ACUGUAAC GCGUCG@LB@3'-AUU...AGUAG A AG UUCAA...CAA-5'@LB@ | |@LB@ 159 132@LB@@LB@@LB@Energy -17.37 kcal/mol@LB@Hybridization Energy -32.4946 kcal/mol@LB@Unfolding Energy - mRNA 7.19227 kcal/mol@LB@Unfolding Energy - sRNA 8.48433 kcal/mol@LB@@LB@Position - mRNA 124 -- 148@LB@Position - sRNA 133 -- 158@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 141 -- 147@LB@ |