33 |
0.002101 |
0.2088 |
b1300 |
puuC |
-8.92 |
0.198515 |
81 -- 101 |
2 -- 20 |
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; succinate semialdehyde dehydrogenase |
b0312 |
_____________80____________________102\n_____________|_____________________|\n5'-GGC...CGGCU___AG_______U________AGAAU...AAA-3'\n______________UGA__GAUGAAG_GUAUAUAA\n______________|||__:||:|||_|:||||||\n______________ACU__UUAUUUC_CGUAUAUU\n3'-UUU...UAGAC___G_________________G-5'\n_____________|_____________________|\n_____________21____________________1\n |
94 -- 100 |
3 -- 9 |
-14.4968 kcal/mol |
1.34672 kcal/mol |
4.22649 kcal/mol |
80 102@LB@ | |@LB@5'-GGC...CGGCU AG U AGAAU...AAA-3'@LB@ UGA GAUGAAG GUAUAUAA@LB@ ||| :||:||| |:||||||@LB@ ACU UUAUUUC CGUAUAUU@LB@3'-UUU...UAGAC G G-5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -8.92 kcal/mol@LB@Hybridization Energy -14.4968 kcal/mol@LB@Unfolding Energy - mRNA 1.34672 kcal/mol@LB@Unfolding Energy - sRNA 4.22649 kcal/mol@LB@@LB@Position - mRNA 81 -- 101@LB@Position - sRNA 2 -- 20@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 3 -- 9@LB@ |
141 |
0.01633 |
0.3828 |
b2842 |
kduD |
-11.01 |
0.074109 |
260 -- 295 |
38 -- 66 |
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase; KDG oxidoreductase; 20-ketosteroid reductase |
b4266 b2774 |
_____________259__________________________________296\n_____________|____________________________________|\n5'-CCG...GAUAC____CU_______GGGA_____U__G__C____G__AGCGG-3'\n______________UGGA__GGGUCAG____UGGCG_UG_GG_UGGC_CA\n______________||||__:::||||____||||:_||_::_||||_||\n______________ACCU__UUUAGUC____ACCGU_AC_UU_ACCG_GU\n3'-UUU...AUACA______________________U__G_______G__UGUCU...UUG-5'\n_____________|____________________________________|\n_____________67___________________________________37\n |
266 -- 272 |
56 -- 62 |
-28.5955 kcal/mol |
10.9072 kcal/mol |
6.67608 kcal/mol |
259 296@LB@ | |@LB@5'-CCG...GAUAC CU GGGA U G C G AGCGG-3'@LB@ UGGA GGGUCAG UGGCG UG GG UGGC CA@LB@ |||| :::|||| ||||: || :: |||| ||@LB@ ACCU UUUAGUC ACCGU AC UU ACCG GU@LB@3'-UUU...AUACA U G G UGUCU...UUG-5'@LB@ | |@LB@ 67 37@LB@@LB@@LB@Energy -11.01 kcal/mol@LB@Hybridization Energy -28.5955 kcal/mol@LB@Unfolding Energy - mRNA 10.9072 kcal/mol@LB@Unfolding Energy - sRNA 6.67608 kcal/mol@LB@@LB@Position - mRNA 260 -- 295@LB@Position - sRNA 38 -- 66@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 56 -- 62@LB@ |
142 |
0.01646 |
0.3828 |
b2248 |
rhmR |
-12.12 |
0.041559 |
199 -- 228 |
39 -- 72 |
putative DNA-binding transcriptional regulator for the rhm operon |
b4299 |
_____________198________________________________229\n_____________|__________________________________|\n5'-UUU...GUCCA________________A______A__UCCC____UGACA...ACA-3'\n______________GUAUGUUGGA__AUCA___GCAA_GU____GCCC\n______________:|||||||||__||||___||||_|:____||||\n______________UAUACAACCU__UAGU___CGUU_CG____CGGG\n3'-UUU...AAAAA__________UU____CAC____A__UUAC____UUGUC...UUG-5'\n_____________|__________________________________|\n_____________73_________________________________38\n |
202 -- 208 |
63 -- 69 |
-27.9384 kcal/mol |
8.52428 kcal/mol |
7.29447 kcal/mol |
198 229@LB@ | |@LB@5'-UUU...GUCCA A A UCCC UGACA...ACA-3'@LB@ GUAUGUUGGA AUCA GCAA GU GCCC@LB@ :||||||||| |||| |||| |: ||||@LB@ UAUACAACCU UAGU CGUU CG CGGG@LB@3'-UUU...AAAAA UU CAC A UUAC UUGUC...UUG-5'@LB@ | |@LB@ 73 38@LB@@LB@@LB@Energy -12.12 kcal/mol@LB@Hybridization Energy -27.9384 kcal/mol@LB@Unfolding Energy - mRNA 8.52428 kcal/mol@LB@Unfolding Energy - sRNA 7.29447 kcal/mol@LB@@LB@Position - mRNA 199 -- 228@LB@Position - sRNA 39 -- 72@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 63 -- 69@LB@ |
153 |
0.01791 |
0.3828 |
b2384 |
ypdE |
-7.27 |
0.383330 |
233 -- 249 |
39 -- 54 |
aminopeptidase |
b4305 b3898 |
_____________232_______________250\n_____________|_________________|\n5'-AUU...AGCGA____G_______C____CCUCG...UGC-3'\n______________GGCA_AUGCGAU_GCCU\n______________||||_||||:||_|||:\n______________CCGU_UACGUUA_CGGG\n3'-UUU...AGUCA____________C____UUGUC...UUG-5'\n_____________|_________________|\n_____________55________________38\n |
238 -- 244 |
44 -- 50 |
-20.1031 kcal/mol |
8.07514 kcal/mol |
4.76022 kcal/mol |
232 250@LB@ | |@LB@5'-AUU...AGCGA G C CCUCG...UGC-3'@LB@ GGCA AUGCGAU GCCU@LB@ |||| ||||:|| |||:@LB@ CCGU UACGUUA CGGG@LB@3'-UUU...AGUCA C UUGUC...UUG-5'@LB@ | |@LB@ 55 38@LB@@LB@@LB@Energy -7.27 kcal/mol@LB@Hybridization Energy -20.1031 kcal/mol@LB@Unfolding Energy - mRNA 8.07514 kcal/mol@LB@Unfolding Energy - sRNA 4.76022 kcal/mol@LB@@LB@Position - mRNA 233 -- 249@LB@Position - sRNA 39 -- 54@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 44 -- 50@LB@ |
1 |
0 |
0 |
b2215 |
ompC |
-25.52 |
0.000001 |
134 -- 186 |
1 -- 70 |
outer membrane porin protein C |
|
_____________133____________________________________________________________________187\n_____________|______________________________________________________________________|\n5'-AUC...GAUUA___AG__UU_____________________________________AAGCA___________________AGAGG...AUC-3'\n______________AUG__GG__AAUCAGU____AUGCAGUGGC__________AUAAAA________AAUAAAGGCAUAUAAC\n______________|||__||__|||||||____|||||:||||__________||||||________||||||||||||||||\n______________UAC__CC__UUAGUCA____UACGUUACCG__________UAUUUU________UUAUUUCCGUAUAUUG\n3'-UUU...AAAUA___AA__UU_______CCGU__________GGUUGUCUUU______AGACACUG________________-5'\n_____________|_____________________________________________________________________|\n_____________71____________________________________________________________________1\n |
180 -- 186 |
1 -- 7 |
-48.3995 kcal/mol |
10.7142 kcal/mol |
12.1618 kcal/mol |
133 187@LB@ | |@LB@5'-AUC...GAUUA AG UU AAGCA AGAGG...AUC-3'@LB@ AUG GG AAUCAGU AUGCAGUGGC AUAAAA AAUAAAGGCAUAUAAC@LB@ ||| || ||||||| |||||:|||| |||||| ||||||||||||||||@LB@ UAC CC UUAGUCA UACGUUACCG UAUUUU UUAUUUCCGUAUAUUG@LB@3'-UUU...AAAUA AA UU CCGU GGUUGUCUUU AGACACUG -5'@LB@ | |@LB@ 71 1@LB@@LB@@LB@Energy -25.52 kcal/mol@LB@Hybridization Energy -48.3995 kcal/mol@LB@Unfolding Energy - mRNA 10.7142 kcal/mol@LB@Unfolding Energy - sRNA 12.1618 kcal/mol@LB@@LB@Position - mRNA 134 -- 186@LB@Position - sRNA 1 -- 70@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 1 -- 7@LB@ |
2 |
3.183e-05 |
0.03921 |
b0889 |
lrp |
-15.78 |
0.004789 |
150 -- 212 |
1 -- 70 |
leucine-responsive global transcriptional regulator |
|
_____________149__________________________________________________________________________213\n_____________|____________________________________________________________________________|\n5'-GUG...CAGUG_____UC________ACA______A_G__A__AAU___________________________UAAU____G_____AAGAA...AGC-3'\n______________AUGUU__AGGGUCAG___GG_AGU_G_GA_GG____ACAGAGA___________GACAAUAA____GGUA_AUAGC\n______________|||||__|:::||||___||_|:|_|_:|_||____|||||:|___________||||||||____||:|_|||:|\n______________UACAA__UUUUAGUC___CC_UUA_C_UU_CC____UGUCUUU___________CUGUUAUU____CCGU_UAUUG\n3'-UUU...AAAUA_____CC________A____G_____G__A__GGGU_______UAUUUUAGACA________U_______A_____-5'\n_____________|___________________________________________________________________________|\n_____________71__________________________________________________________________________1\n |
192 -- 198 |
12 -- 18 |
-35.9997 kcal/mol |
8.06188 kcal/mol |
12.1618 kcal/mol |
149 213@LB@ | |@LB@5'-GUG...CAGUG UC ACA A G A AAU UAAU G AAGAA...AGC-3'@LB@ AUGUU AGGGUCAG GG AGU G GA GG ACAGAGA GACAAUAA GGUA AUAGC@LB@ ||||| |:::|||| || |:| | :| || |||||:| |||||||| ||:| |||:|@LB@ UACAA UUUUAGUC CC UUA C UU CC UGUCUUU CUGUUAUU CCGU UAUUG@LB@3'-UUU...AAAUA CC A G G A GGGU UAUUUUAGACA U A -5'@LB@ | |@LB@ 71 1@LB@@LB@@LB@Energy -15.78 kcal/mol@LB@Hybridization Energy -35.9997 kcal/mol@LB@Unfolding Energy - mRNA 8.06188 kcal/mol@LB@Unfolding Energy - sRNA 12.1618 kcal/mol@LB@@LB@Position - mRNA 150 -- 212@LB@Position - sRNA 1 -- 70@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 12 -- 18@LB@ |
3 |
3.498e-05 |
0.03921 |
b4255 |
rraB |
-13.36 |
0.020838 |
142 -- 156 |
41 -- 54 |
protein inhibitor of RNase E |
|
_____________141_____________157\n_____________|_______________|\n5'-GAG...GUGGA_______U_______GUGUG...CCA-3'\n______________GGCAAUG_CAGUGGU\n______________|||||||_||:|||:\n______________CCGUUAC_GUUACCG\n3'-UUU...AGUCA_______________GGUUG...UUG-5'\n_____________|_______________|\n_____________55______________40\n |
150 -- 156 |
41 -- 47 |
-21.65 kcal/mol |
4.39843 kcal/mol |
3.89026 kcal/mol |
141 157@LB@ | |@LB@5'-GAG...GUGGA U GUGUG...CCA-3'@LB@ GGCAAUG CAGUGGU@LB@ ||||||| ||:|||:@LB@ CCGUUAC GUUACCG@LB@3'-UUU...AGUCA GGUUG...UUG-5'@LB@ | |@LB@ 55 40@LB@@LB@@LB@Energy -13.36 kcal/mol@LB@Hybridization Energy -21.65 kcal/mol@LB@Unfolding Energy - mRNA 4.39843 kcal/mol@LB@Unfolding Energy - sRNA 3.89026 kcal/mol@LB@@LB@Position - mRNA 142 -- 156@LB@Position - sRNA 41 -- 54@LB@Position Seed - mRNA 150 -- 156@LB@Position Seed - sRNA 41 -- 47@LB@ |
4 |
6.145e-05 |
0.05167 |
b4217 |
ytfK |
-14.33 |
0.011783 |
150 -- 205 |
11 -- 68 |
DUF1107 family protein |
|
_____________149________________________________________________________________206\n_____________|__________________________________________________________________|\n5'-GAA...UAAUA______CC___________CC___CA___GUAAUAC______________________________AAUUU...AAU-3'\n______________GUUGGG__GAUU_GUGGCA__GCA__GGC_______UCAGCAGGAGAUA_________ACAAUGAA\n______________|||||:__:||:_||||||__|||__|||_______:||:|||:|:|||_________|||||:||\n______________CAACCU__UUAG_CACCGU__CGU__CCG_______GGUUGUCUUUUAU_________UGUUAUUU\n3'-UUU...AUAUA______U_____U______UA___UA_______________________UUUAGACAC________CCGUA...UUG-5'\n_____________|__________________________________________________________________|\n_____________69_________________________________________________________________10\n |
199 -- 205 |
11 -- 17 |
-43.2853 kcal/mol |
16.8726 kcal/mol |
12.0809 kcal/mol |
149 206@LB@ | |@LB@5'-GAA...UAAUA CC CC CA GUAAUAC AAUUU...AAU-3'@LB@ GUUGGG GAUU GUGGCA GCA GGC UCAGCAGGAGAUA ACAAUGAA@LB@ |||||: :||: |||||| ||| ||| :||:|||:|:||| |||||:||@LB@ CAACCU UUAG CACCGU CGU CCG GGUUGUCUUUUAU UGUUAUUU@LB@3'-UUU...AUAUA U U UA UA UUUAGACAC CCGUA...UUG-5'@LB@ | |@LB@ 69 10@LB@@LB@@LB@Energy -14.33 kcal/mol@LB@Hybridization Energy -43.2853 kcal/mol@LB@Unfolding Energy - mRNA 16.8726 kcal/mol@LB@Unfolding Energy - sRNA 12.0809 kcal/mol@LB@@LB@Position - mRNA 150 -- 205@LB@Position - sRNA 11 -- 68@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 11 -- 17@LB@ |
5 |
0.0001064 |
0.07159 |
b1784 |
yeaH |
-10.63 |
0.089613 |
150 -- 205 |
1 -- 57 |
UPF0229 family protein |
|
_____________149________________________________________________________206\n_____________|__________________________________________________________|\n5'-UGU...UGAGA__C_____CA_______G_____UACAGUUGGCAAA___AGUACG_____________CUGGU...CGA-3'\n______________AG_GGCAA__CA__GGC_UAGCA_____________UGU______GGGGGCAUAUGAC\n______________||_|||||__||__|||_:|:||_____________|||______:::|||||||:||\n______________UC_CCGUU__GU__CCG_GUUGU_____________ACA______UUUCCGUAUAUUG\n3'-UUU...UUUAG__A_____AC__UA___G_____CUUUUAUUUUAG____CUGUUA_____________-5'\n_____________|_________________________________________________________|\n_____________58________________________________________________________1\n |
198 -- 204 |
2 -- 8 |
-36.8439 kcal/mol |
14.0882 kcal/mol |
12.1233 kcal/mol |
149 206@LB@ | |@LB@5'-UGU...UGAGA C CA G UACAGUUGGCAAA AGUACG CUGGU...CGA-3'@LB@ AG GGCAA CA GGC UAGCA UGU GGGGGCAUAUGAC@LB@ || ||||| || ||| :|:|| ||| :::|||||||:||@LB@ UC CCGUU GU CCG GUUGU ACA UUUCCGUAUAUUG@LB@3'-UUU...UUUAG A AC UA G CUUUUAUUUUAG CUGUUA -5'@LB@ | |@LB@ 58 1@LB@@LB@@LB@Energy -10.63 kcal/mol@LB@Hybridization Energy -36.8439 kcal/mol@LB@Unfolding Energy - mRNA 14.0882 kcal/mol@LB@Unfolding Energy - sRNA 12.1233 kcal/mol@LB@@LB@Position - mRNA 150 -- 205@LB@Position - sRNA 1 -- 57@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 2 -- 8@LB@ |
6 |
0.0002023 |
0.1081 |
b1884 |
cheR |
-8.31 |
0.257615 |
184 -- 205 |
1 -- 21 |
chemotaxis regulator protein-glutamate methyltransferase |
|
_____________183____________________206\n_____________|______________________|\n5'-GCC...CUGAA_____UGA_______C______UUCAU...UGA-3'\n______________GUGAU___GAAGGCG_UAUGAC\n______________||||:___:|||||:_|||:||\n______________CACUG___UUUCCGU_AUAUUG\n3'-UUU...UUAGA_____UUA______________-5'\n_____________|_____________________|\n_____________22____________________1\n |
192 -- 198 |
7 -- 13 |
-19.9838 kcal/mol |
7.26541 kcal/mol |
4.41334 kcal/mol |
183 206@LB@ | |@LB@5'-GCC...CUGAA UGA C UUCAU...UGA-3'@LB@ GUGAU GAAGGCG UAUGAC@LB@ ||||: :|||||: |||:||@LB@ CACUG UUUCCGU AUAUUG@LB@3'-UUU...UUAGA UUA -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -8.31 kcal/mol@LB@Hybridization Energy -19.9838 kcal/mol@LB@Unfolding Energy - mRNA 7.26541 kcal/mol@LB@Unfolding Energy - sRNA 4.41334 kcal/mol@LB@@LB@Position - mRNA 184 -- 205@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 7 -- 13@LB@ |
7 |
0.0002249 |
0.1081 |
b4032 |
malG |
-16.06 |
0.003987 |
187 -- 221 |
31 -- 65 |
maltose transporter subunit |
|
_____________186_________________________________222\n_____________|___________________________________|\n5'-CGU...AUUAA_______AACAAAAAUG_____________C____UCGCA...UGG-3'\n______________GGGAGAU__________GCAAUGGUCCAAC_GAAA\n______________||:|:||__________|||||||:|||||_||||\n______________CCUUUUA__________CGUUACCGGGUUG_CUUU\n3'-UUU...UACAA_______GUCACCGUUA_____________U____UAUUU...UUG-5'\n_____________|___________________________________|\n_____________66__________________________________30\n |
210 -- 216 |
36 -- 42 |
-33.4232 kcal/mol |
6.39587 kcal/mol |
10.9697 kcal/mol |
186 222@LB@ | |@LB@5'-CGU...AUUAA AACAAAAAUG C UCGCA...UGG-3'@LB@ GGGAGAU GCAAUGGUCCAAC GAAA@LB@ ||:|:|| |||||||:||||| ||||@LB@ CCUUUUA CGUUACCGGGUUG CUUU@LB@3'-UUU...UACAA GUCACCGUUA U UAUUU...UUG-5'@LB@ | |@LB@ 66 30@LB@@LB@@LB@Energy -16.06 kcal/mol@LB@Hybridization Energy -33.4232 kcal/mol@LB@Unfolding Energy - mRNA 6.39587 kcal/mol@LB@Unfolding Energy - sRNA 10.9697 kcal/mol@LB@@LB@Position - mRNA 187 -- 221@LB@Position - sRNA 31 -- 65@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 36 -- 42@LB@ |
8 |
0.0003008 |
0.1262 |
b3191 |
mlaB |
-9.66 |
0.142648 |
16 -- 23 |
51 -- 58 |
ABC transporter maintaining OM lipid asymmetry cytoplasmic STAS component |
|
_____________15_______24\n_____________|________|\n5'-GUG...ACUUC________UAAAA...AGG-3'\n______________CAGUGGCG\n______________|||||||:\n______________GUCACCGU\n3'-UUU...UUUUA________UACGU...UUG-5'\n_____________|________|\n_____________59_______50\n |
17 -- 23 |
51 -- 57 |
-13.9143 kcal/mol |
1.55672 kcal/mol |
2.69685 kcal/mol |
15 24@LB@ | |@LB@5'-GUG...ACUUC UAAAA...AGG-3'@LB@ CAGUGGCG@LB@ |||||||:@LB@ GUCACCGU@LB@3'-UUU...UUUUA UACGU...UUG-5'@LB@ | |@LB@ 59 50@LB@@LB@@LB@Energy -9.66 kcal/mol@LB@Hybridization Energy -13.9143 kcal/mol@LB@Unfolding Energy - mRNA 1.55672 kcal/mol@LB@Unfolding Energy - sRNA 2.69685 kcal/mol@LB@@LB@Position - mRNA 16 -- 23@LB@Position - sRNA 51 -- 58@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 51 -- 57@LB@ |
9 |
0.0003848 |
0.1262 |
b2708 |
srlQ |
-10.45 |
0.097910 |
5 -- 28 |
40 -- 60 |
D-arabinose 5-phosphate isomerase |
|
_____________4_________________________29\n_____________|_________________________|\n_______5'-UACC______AA____AU___________GCGCG...GCG-3'\n______________GUCAGU__GGCA__GUGCAAUG_CC\n______________:|||||__||||__:|||||||_||\n______________UAGUCA__CCGU__UACGUUAC_GG\n3'-UUU...CCUUU______________________C__GUUGU...UUG-5'\n_____________|_________________________|\n_____________61________________________39\n |
20 -- 26 |
43 -- 49 |
-23.8159 kcal/mol |
7.25851 kcal/mol |
6.10522 kcal/mol |
4 29@LB@ | |@LB@ 5'-UACC AA AU GCGCG...GCG-3'@LB@ GUCAGU GGCA GUGCAAUG CC@LB@ :||||| |||| :||||||| ||@LB@ UAGUCA CCGU UACGUUAC GG@LB@3'-UUU...CCUUU C GUUGU...UUG-5'@LB@ | |@LB@ 61 39@LB@@LB@@LB@Energy -10.45 kcal/mol@LB@Hybridization Energy -23.8159 kcal/mol@LB@Unfolding Energy - mRNA 7.25851 kcal/mol@LB@Unfolding Energy - sRNA 6.10522 kcal/mol@LB@@LB@Position - mRNA 5 -- 28@LB@Position - sRNA 40 -- 60@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 43 -- 49@LB@ |
10 |
0.0004066 |
0.1262 |
b3429 |
glgA |
-9.74 |
0.137242 |
173 -- 185 |
51 -- 64 |
glycogen synthase |
|
_____________172____________186\n_____________|______________|\n5'-GUA...GCUAC______________UAAAC...ACG-3'\n______________GGAAGUUAG_GGCA\n______________|:||:|:||_||||\n______________CUUUUAGUC_CCGU\n3'-UUU...ACAAC_________A____UACGU...UUG-5'\n_____________|______________|\n_____________65_____________50\n |
175 -- 181 |
56 -- 62 |
-15.3924 kcal/mol |
2.76007 kcal/mol |
2.8882 kcal/mol |
172 186@LB@ | |@LB@5'-GUA...GCUAC UAAAC...ACG-3'@LB@ GGAAGUUAG GGCA@LB@ |:||:|:|| ||||@LB@ CUUUUAGUC CCGU@LB@3'-UUU...ACAAC A UACGU...UUG-5'@LB@ | |@LB@ 65 50@LB@@LB@@LB@Energy -9.74 kcal/mol@LB@Hybridization Energy -15.3924 kcal/mol@LB@Unfolding Energy - mRNA 2.76007 kcal/mol@LB@Unfolding Energy - sRNA 2.8882 kcal/mol@LB@@LB@Position - mRNA 173 -- 185@LB@Position - sRNA 51 -- 64@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 56 -- 62@LB@ |
11 |
0.000438 |
0.1262 |
b0467 |
priC |
-14.72 |
0.009297 |
1 -- 37 |
32 -- 65 |
primosomal replication protein N'' |
|
______________1____________________________________38\n______________|____________________________________|\n___________5'-______GAACG_____A___CCA___CG_________UAAAC...GUU-3'\n______________GGGGAA_____GGCAA_GCA___GGC__CCAGCAGGA\n______________||::||_____|||||_|||___|||__|||:|||:|\n______________CCUUUU_____CCGUU_CGU___CCG__GGUUGUCUU\n3'-UUU...UACAA______AGUCA_____A___UA_______________UUAUU...UUG-5'\n_____________|_____________________________________|\n_____________66____________________________________31\n |
30 -- 36 |
33 -- 39 |
-34.0772 kcal/mol |
8.3902 kcal/mol |
10.9649 kcal/mol |
1 38@LB@ | |@LB@ 5'- GAACG A CCA CG UAAAC...GUU-3'@LB@ GGGGAA GGCAA GCA GGC CCAGCAGGA@LB@ ||::|| ||||| ||| ||| |||:|||:|@LB@ CCUUUU CCGUU CGU CCG GGUUGUCUU@LB@3'-UUU...UACAA AGUCA A UA UUAUU...UUG-5'@LB@ | |@LB@ 66 31@LB@@LB@@LB@Energy -14.72 kcal/mol@LB@Hybridization Energy -34.0772 kcal/mol@LB@Unfolding Energy - mRNA 8.3902 kcal/mol@LB@Unfolding Energy - sRNA 10.9649 kcal/mol@LB@@LB@Position - mRNA 1 -- 37@LB@Position - sRNA 32 -- 65@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 33 -- 39@LB@ |
12 |
0.0004505 |
0.1262 |
b3248 |
yhdE |
-11.12 |
0.070056 |
184 -- 205 |
1 -- 21 |
dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo-UTP pyrophosphatase |
|
_____________183_____________________206\n_____________|_______________________|\n5'-UUA...UUGCA______________UUC______UUCUC...AGC-3'\n______________GUG_CAAUAAAGGU___UAUGAC\n______________|||_|||||||||:___|||:||\n______________CAC_GUUAUUUCCG___AUAUUG\n3'-UUU...UUAGA___U__________U________-5'\n_____________|______________________|\n_____________22_____________________1\n |
190 -- 196 |
8 -- 14 |
-19.9684 kcal/mol |
4.43203 kcal/mol |
4.41334 kcal/mol |
183 206@LB@ | |@LB@5'-UUA...UUGCA UUC UUCUC...AGC-3'@LB@ GUG CAAUAAAGGU UAUGAC@LB@ ||| |||||||||: |||:||@LB@ CAC GUUAUUUCCG AUAUUG@LB@3'-UUU...UUAGA U U -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -11.12 kcal/mol@LB@Hybridization Energy -19.9684 kcal/mol@LB@Unfolding Energy - mRNA 4.43203 kcal/mol@LB@Unfolding Energy - sRNA 4.41334 kcal/mol@LB@@LB@Position - mRNA 184 -- 205@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 8 -- 14@LB@ |
13 |
0.0005138 |
0.1268 |
b0055 |
djlA |
-16.40 |
0.003186 |
213 -- 240 |
39 -- 65 |
membrane-anchored DnaK co-chaperone DNA-binding protein |
|
_____________212__________________________241\n_____________|____________________________|\n5'-GAC...AUUGG__A_______U_____UG__C_______UACUG...UUG-3'\n______________GG_AAAAUCA_UGGCG__GC_GUGGCCU\n______________||_|||||||_||||:__||_:|||||:\n______________CC_UUUUAGU_ACCGU__CG_UACCGGG\n3'-UUU...UACAA__________C_____UA__U_______UUGUC...UUG-5'\n_____________|____________________________|\n_____________66___________________________38\n |
234 -- 240 |
39 -- 45 |
-30.8595 kcal/mol |
7.7929 kcal/mol |
6.66922 kcal/mol |
212 241@LB@ | |@LB@5'-GAC...AUUGG A U UG C UACUG...UUG-3'@LB@ GG AAAAUCA UGGCG GC GUGGCCU@LB@ || ||||||| ||||: || :|||||:@LB@ CC UUUUAGU ACCGU CG UACCGGG@LB@3'-UUU...UACAA C UA U UUGUC...UUG-5'@LB@ | |@LB@ 66 38@LB@@LB@@LB@Energy -16.40 kcal/mol@LB@Hybridization Energy -30.8595 kcal/mol@LB@Unfolding Energy - mRNA 7.7929 kcal/mol@LB@Unfolding Energy - sRNA 6.66922 kcal/mol@LB@@LB@Position - mRNA 213 -- 240@LB@Position - sRNA 39 -- 65@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 39 -- 45@LB@ |
14 |
0.0005336 |
0.1268 |
b0178 |
skp |
-14.43 |
0.011083 |
94 -- 112 |
46 -- 65 |
periplasmic chaperone |
|
_____________93___________________113\n_____________|____________________|\n5'-CUC...ACAAA____UG______________GCGAU...UCC-3'\n______________GGAA___UAGUGGUAGUGUA\n______________||||___:|||||:|:||:|\n______________CCUU___GUCACCGUUACGU\n3'-UUU...UACAA____UUA_____________UACCG...UUG-5'\n_____________|____________________|\n_____________66___________________45\n |
105 -- 111 |
47 -- 53 |
-21.6303 kcal/mol |
3.11688 kcal/mol |
4.07994 kcal/mol |
93 113@LB@ | |@LB@5'-CUC...ACAAA UG GCGAU...UCC-3'@LB@ GGAA UAGUGGUAGUGUA@LB@ |||| :|||||:|:||:|@LB@ CCUU GUCACCGUUACGU@LB@3'-UUU...UACAA UUA UACCG...UUG-5'@LB@ | |@LB@ 66 45@LB@@LB@@LB@Energy -14.43 kcal/mol@LB@Hybridization Energy -21.6303 kcal/mol@LB@Unfolding Energy - mRNA 3.11688 kcal/mol@LB@Unfolding Energy - sRNA 4.07994 kcal/mol@LB@@LB@Position - mRNA 94 -- 112@LB@Position - sRNA 46 -- 65@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 47 -- 53@LB@ |
15 |
0.0005657 |
0.1268 |
b3715 |
yieH |
-7.91 |
0.301098 |
195 -- 204 |
4 -- 13 |
phosphoenolpyruvate and 6-phosphogluconate phosphatase |
|
_____________194________205\n_____________|__________|\n5'-CUG...AAAGG__________CCCGG...UUG-3'\n______________AAAGGCAUGU\n______________||||||||:|\n______________UUUCCGUAUA\n3'-UUU...UGUUA__________UUG-5'\n_____________|__________|\n_____________14_________3\n |
198 -- 204 |
4 -- 10 |
-12.382 kcal/mol |
1.66065 kcal/mol |
2.80714 kcal/mol |
194 205@LB@ | |@LB@5'-CUG...AAAGG CCCGG...UUG-3'@LB@ AAAGGCAUGU@LB@ ||||||||:|@LB@ UUUCCGUAUA@LB@3'-UUU...UGUUA UUG-5'@LB@ | |@LB@ 14 3@LB@@LB@@LB@Energy -7.91 kcal/mol@LB@Hybridization Energy -12.382 kcal/mol@LB@Unfolding Energy - mRNA 1.66065 kcal/mol@LB@Unfolding Energy - sRNA 2.80714 kcal/mol@LB@@LB@Position - mRNA 195 -- 204@LB@Position - sRNA 4 -- 13@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 4 -- 10@LB@ |
16 |
0.0007379 |
0.1438 |
b3838 |
tatB |
-12.16 |
0.040760 |
131 -- 190 |
7 -- 68 |
TatABCE protein translocation system subunit |
|
_____________130___________________________________________________________________191\n_____________|_____________________________________________________________________|\n5'-UCG...AAGCA_GC___UAC_______GAA_____________AA_________CGC______GCC__________A___GGUGU...CGG-3'\n______________G__GGA___GAAUCAG___CA_______GGCU__AACAGAAGA___GAAG_C____ACGAUAAAG_GCA\n______________|__|||___:||||||___||_______|||:__|||||||:|___:||:_|____||:||||||_|||\n______________C__CCU___UUUAGUC___GU_______CCGG__UUGUCUUUU___UUUU_G____UGUUAUUUC_CGU\n3'-UUU...AUAUA_AA_____________ACC__UACGUUA____G__________A______A_ACAC_____________AUAUUG-5'\n_____________|_____________________________________________________________________|\n_____________69____________________________________________________________________6\n |
180 -- 186 |
10 -- 16 |
-35.021 kcal/mol |
10.7079 kcal/mol |
12.1575 kcal/mol |
130 191@LB@ | |@LB@5'-UCG...AAGCA GC UAC GAA AA CGC GCC A GGUGU...CGG-3'@LB@ G GGA GAAUCAG CA GGCU AACAGAAGA GAAG C ACGAUAAAG GCA@LB@ | ||| :|||||| || |||: |||||||:| :||: | ||:|||||| |||@LB@ C CCU UUUAGUC GU CCGG UUGUCUUUU UUUU G UGUUAUUUC CGU@LB@3'-UUU...AUAUA AA ACC UACGUUA G A A ACAC AUAUUG-5'@LB@ | |@LB@ 69 6@LB@@LB@@LB@Energy -12.16 kcal/mol@LB@Hybridization Energy -35.021 kcal/mol@LB@Unfolding Energy - mRNA 10.7079 kcal/mol@LB@Unfolding Energy - sRNA 12.1575 kcal/mol@LB@@LB@Position - mRNA 131 -- 190@LB@Position - sRNA 7 -- 68@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 10 -- 16@LB@ |
17 |
0.0007572 |
0.1438 |
b2512 |
bamB |
-10.25 |
0.108120 |
60 -- 97 |
8 -- 56 |
BamABCDE complex OM biogenesis lipoprotein |
|
_____________59________________________________________________98\n_____________|_________________________________________________|\n5'-GCU...CCUGC_______A___U_____G____AAG_________________GC_____GCGCG...CCC-3'\n______________GUGGUGA_GCA_U_GCU_AGCA_____________GUGAUAA__AAGGU\n______________||||::|_|||_|_||:_|:||_____________||||:||__||||:\n______________CACCGUU_CGU_A_CGG_UUGU_____________CACUGUU__UUCCG\n3'-UUU...UUAGU_______A___U_C___G____CUUUUAUUUUAGA_______AU_____UAUAUUG-5'\n_____________|_________________________________________________|\n_____________57________________________________________________7\n |
84 -- 90 |
15 -- 21 |
-31.6141 kcal/mol |
9.34469 kcal/mol |
12.0216 kcal/mol |
59 98@LB@ | |@LB@5'-GCU...CCUGC A U G AAG GC GCGCG...CCC-3'@LB@ GUGGUGA GCA U GCU AGCA GUGAUAA AAGGU@LB@ ||||::| ||| | ||: |:|| ||||:|| ||||:@LB@ CACCGUU CGU A CGG UUGU CACUGUU UUCCG@LB@3'-UUU...UUAGU A U C G CUUUUAUUUUAGA AU UAUAUUG-5'@LB@ | |@LB@ 57 7@LB@@LB@@LB@Energy -10.25 kcal/mol@LB@Hybridization Energy -31.6141 kcal/mol@LB@Unfolding Energy - mRNA 9.34469 kcal/mol@LB@Unfolding Energy - sRNA 12.0216 kcal/mol@LB@@LB@Position - mRNA 60 -- 97@LB@Position - sRNA 8 -- 56@LB@Position Seed - mRNA 84 -- 90@LB@Position Seed - sRNA 15 -- 21@LB@ |
18 |
0.0007704 |
0.1438 |
b4526 |
ydaE |
-7.35 |
0.372707 |
186 -- 222 |
21 -- 54 |
conserved protein Rac prophage |
|
_____________185___________________________________223\n_____________|_____________________________________|\n5'-ACU...GUAAA_____A__C_____GA____UA____________G__CUUAC...UAU-3'\n______________GGCGG_GU_AUGGU__UGAC__AGAAAAUAAAAU_UG\n______________|||::_|:_||||:__::||__||||||||||||_||\n______________CCGUU_CG_UACCG__GUUG__UCUUUUAUUUUA_AC\n3'-UUU...AGUCA_____A__U_____G___________________G__ACUGU...UUG-5'\n_____________|_____________________________________|\n_____________55____________________________________20\n |
212 -- 218 |
25 -- 31 |
-28.7009 kcal/mol |
12.2907 kcal/mol |
9.06413 kcal/mol |
185 223@LB@ | |@LB@5'-ACU...GUAAA A C GA UA G CUUAC...UAU-3'@LB@ GGCGG GU AUGGU UGAC AGAAAAUAAAAU UG@LB@ |||:: |: ||||: ::|| |||||||||||| ||@LB@ CCGUU CG UACCG GUUG UCUUUUAUUUUA AC@LB@3'-UUU...AGUCA A U G G ACUGU...UUG-5'@LB@ | |@LB@ 55 20@LB@@LB@@LB@Energy -7.35 kcal/mol@LB@Hybridization Energy -28.7009 kcal/mol@LB@Unfolding Energy - mRNA 12.2907 kcal/mol@LB@Unfolding Energy - sRNA 9.06413 kcal/mol@LB@@LB@Position - mRNA 186 -- 222@LB@Position - sRNA 21 -- 54@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 25 -- 31@LB@ |
19 |
0.0008126 |
0.1438 |
b1205 |
ychH |
-14.60 |
0.010030 |
245 -- 269 |
40 -- 68 |
DUF2583 family putative inner membrane protein |
|
_____________244____________________________270\n_____________|______________________________|\n5'-CAA...AUGGG___________U__________________GGCGU...UAC-3'\n______________GUUGG___GUC_GGUGGUAAUG__GUGGUC\n______________|||||___:||_:||||:||||__:|||:|\n______________CAACC___UAG_UCACCGUUAC__UACCGG\n3'-UUU...AUAUA_____UUU______________GU______GUUGU...UUG-5'\n_____________|______________________________|\n_____________69_____________________________39\n |
257 -- 263 |
48 -- 54 |
-27.4871 kcal/mol |
6.07036 kcal/mol |
6.81885 kcal/mol |
244 270@LB@ | |@LB@5'-CAA...AUGGG U GGCGU...UAC-3'@LB@ GUUGG GUC GGUGGUAAUG GUGGUC@LB@ ||||| :|| :||||:|||| :|||:|@LB@ CAACC UAG UCACCGUUAC UACCGG@LB@3'-UUU...AUAUA UUU GU GUUGU...UUG-5'@LB@ | |@LB@ 69 39@LB@@LB@@LB@Energy -14.60 kcal/mol@LB@Hybridization Energy -27.4871 kcal/mol@LB@Unfolding Energy - mRNA 6.07036 kcal/mol@LB@Unfolding Energy - sRNA 6.81885 kcal/mol@LB@@LB@Position - mRNA 245 -- 269@LB@Position - sRNA 40 -- 68@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 48 -- 54@LB@ |
20 |
0.0008987 |
0.1511 |
b2597 |
raiA |
-11.08 |
0.071670 |
189 -- 211 |
11 -- 33 |
cold shock protein associated with 30S ribosomal subunit |
|
_____________188_____________________212\n_____________|_______________________|\n5'-GCG...GACAA____________A__________CAUUA...AUC-3'\n______________GAGGUAAAAUUU_UGACAAUGAA\n______________:|::||||||:|_|||||||:||\n______________UUUUAUUUUAGA_ACUGUUAUUU\n3'-UUU...UUGUC____________C__________CCGUA...UUG-5'\n_____________|_______________________|\n_____________34______________________10\n |
205 -- 211 |
11 -- 17 |
-19.0558 kcal/mol |
3.03608 kcal/mol |
4.94152 kcal/mol |
188 212@LB@ | |@LB@5'-GCG...GACAA A CAUUA...AUC-3'@LB@ GAGGUAAAAUUU UGACAAUGAA@LB@ :|::||||||:| |||||||:||@LB@ UUUUAUUUUAGA ACUGUUAUUU@LB@3'-UUU...UUGUC C CCGUA...UUG-5'@LB@ | |@LB@ 34 10@LB@@LB@@LB@Energy -11.08 kcal/mol@LB@Hybridization Energy -19.0558 kcal/mol@LB@Unfolding Energy - mRNA 3.03608 kcal/mol@LB@Unfolding Energy - sRNA 4.94152 kcal/mol@LB@@LB@Position - mRNA 189 -- 211@LB@Position - sRNA 11 -- 33@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 11 -- 17@LB@ |
21 |
0.0009862 |
0.1579 |
b2572 |
rseA |
-10.60 |
0.091224 |
9 -- 29 |
44 -- 65 |
anti-sigma factor |
|
_____________8______________________30\n_____________|______________________|\n___5'-UCCCUCCC________UAC____UG_____AACCU...GGG-3'\n______________GGAAGAUU____GCA__GCAAU\n______________||||:||:____|||__|||||\n______________CCUUUUAG____CGU__CGUUA\n3'-UUU...UACAA________UCAC___UA_____CCGGG...UUG-5'\n_____________|______________________|\n_____________66_____________________43\n |
10 -- 16 |
58 -- 64 |
-18.0609 kcal/mol |
3.14057 kcal/mol |
4.32401 kcal/mol |
8 30@LB@ | |@LB@ 5'-UCCCUCCC UAC UG AACCU...GGG-3'@LB@ GGAAGAUU GCA GCAAU@LB@ ||||:||: ||| |||||@LB@ CCUUUUAG CGU CGUUA@LB@3'-UUU...UACAA UCAC UA CCGGG...UUG-5'@LB@ | |@LB@ 66 43@LB@@LB@@LB@Energy -10.60 kcal/mol@LB@Hybridization Energy -18.0609 kcal/mol@LB@Unfolding Energy - mRNA 3.14057 kcal/mol@LB@Unfolding Energy - sRNA 4.32401 kcal/mol@LB@@LB@Position - mRNA 9 -- 29@LB@Position - sRNA 44 -- 65@LB@Position Seed - mRNA 10 -- 16@LB@Position Seed - sRNA 58 -- 64@LB@ |
22 |
0.001182 |
0.1807 |
b3642 |
pyrE |
-13.24 |
0.022299 |
74 -- 119 |
8 -- 48 |
orotate phosphoribosyltransferase |
|
_____________73______________________________________________120\n_____________|_______________________________________________|\n5'-CGG...UGUUG__UC________G_____UC______CAU___AGC____CA______GGCGC...AUU-3'\n______________GC__UGGCCCGA_GGGAA___GAAUC___UGU___GACG__GAAGGC\n______________||__||||||:|_:|:||___:||||___|||___|||:__:|||||\n______________CG__ACCGGGUU_UCUUU___UUUAG___ACA___CUGU__UUUCCG\n3'-UUU...CGUUA__UU________G_____UAU__________________UA______UAUAUUG-5'\n_____________|_______________________________________________|\n_____________49______________________________________________7\n |
79 -- 85 |
37 -- 43 |
-37.0606 kcal/mol |
11.836 kcal/mol |
11.9819 kcal/mol |
73 120@LB@ | |@LB@5'-CGG...UGUUG UC G UC CAU AGC CA GGCGC...AUU-3'@LB@ GC UGGCCCGA GGGAA GAAUC UGU GACG GAAGGC@LB@ || ||||||:| :|:|| :|||| ||| |||: :|||||@LB@ CG ACCGGGUU UCUUU UUUAG ACA CUGU UUUCCG@LB@3'-UUU...CGUUA UU G UAU UA UAUAUUG-5'@LB@ | |@LB@ 49 7@LB@@LB@@LB@Energy -13.24 kcal/mol@LB@Hybridization Energy -37.0606 kcal/mol@LB@Unfolding Energy - mRNA 11.836 kcal/mol@LB@Unfolding Energy - sRNA 11.9819 kcal/mol@LB@@LB@Position - mRNA 74 -- 119@LB@Position - sRNA 8 -- 48@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 37 -- 43@LB@ |
23 |
0.001281 |
0.182 |
b3541 |
dppD |
-11.06 |
0.072175 |
116 -- 139 |
1 -- 23 |
dipeptide/heme ABC transporter ATPas |
|
_____________115______________________140\n_____________|________________________|\n5'-UUU...CGAUC___C________CU_____U____CUGAU...GCG-3'\n______________CUG_UGACGGUG__GGCAU_UAAC\n______________|||_||||::|:__|||||_||||\n______________GAC_ACUGUUAU__CCGUA_AUUG\n3'-UUU...UUUUA____________UU_____U____-5'\n_____________|_______________________|\n_____________24______________________1\n |
121 -- 127 |
13 -- 19 |
-21.9665 kcal/mol |
6.28511 kcal/mol |
4.61692 kcal/mol |
115 140@LB@ | |@LB@5'-UUU...CGAUC C CU U CUGAU...GCG-3'@LB@ CUG UGACGGUG GGCAU UAAC@LB@ ||| ||||::|: ||||| ||||@LB@ GAC ACUGUUAU CCGUA AUUG@LB@3'-UUU...UUUUA UU U -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -11.06 kcal/mol@LB@Hybridization Energy -21.9665 kcal/mol@LB@Unfolding Energy - mRNA 6.28511 kcal/mol@LB@Unfolding Energy - sRNA 4.61692 kcal/mol@LB@@LB@Position - mRNA 116 -- 139@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 121 -- 127@LB@Position Seed - sRNA 13 -- 19@LB@ |
24 |
0.001299 |
0.182 |
b1267 |
yciO |
-12.11 |
0.041783 |
4 -- 24 |
36 -- 58 |
putative RNA binding protein |
|
_____________3_______________________25\n_____________|_______________________|\n________5'-GCG_____C_________C_______GAACG...CAA-3'\n______________CAGUG_CA__GCAAU_GCCCAAU\n______________|||||_||__|||||_||||||:\n______________GUCAC_GU__CGUUA_CGGGUUG\n3'-UUU...UUUUA_____C__UA_____C_______UCUUU...UUG-5'\n_____________|_______________________|\n_____________59______________________35\n |
18 -- 24 |
36 -- 42 |
-24.2706 kcal/mol |
1.86377 kcal/mol |
10.2972 kcal/mol |
3 25@LB@ | |@LB@ 5'-GCG C C GAACG...CAA-3'@LB@ CAGUG CA GCAAU GCCCAAU@LB@ ||||| || ||||| ||||||:@LB@ GUCAC GU CGUUA CGGGUUG@LB@3'-UUU...UUUUA C UA C UCUUU...UUG-5'@LB@ | |@LB@ 59 35@LB@@LB@@LB@Energy -12.11 kcal/mol@LB@Hybridization Energy -24.2706 kcal/mol@LB@Unfolding Energy - mRNA 1.86377 kcal/mol@LB@Unfolding Energy - sRNA 10.2972 kcal/mol@LB@@LB@Position - mRNA 4 -- 24@LB@Position - sRNA 36 -- 58@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 36 -- 42@LB@ |
25 |
0.001369 |
0.1841 |
b2599 |
pheA |
-10.09 |
0.116571 |
180 -- 205 |
1 -- 20 |
chorismate mutase and prephenate dehydratase P-protein |
|
_____________179________________________206\n_____________|__________________________|\n5'-UGA...UUUAU______CAA_______ACAC______AUCGG...UCG-3'\n______________UGAUAA___AAAGGCA____UAUGAC\n______________|||:||___|||||||____|||:||\n______________ACUGUU___UUUCCGU____AUAUUG\n3'-UUU...UAGAC______A___________________-5'\n_____________|_________________________|\n_____________21________________________1\n |
189 -- 195 |
7 -- 13 |
-16.49 kcal/mol |
2.17136 kcal/mol |
4.22784 kcal/mol |
179 206@LB@ | |@LB@5'-UGA...UUUAU CAA ACAC AUCGG...UCG-3'@LB@ UGAUAA AAAGGCA UAUGAC@LB@ |||:|| ||||||| |||:||@LB@ ACUGUU UUUCCGU AUAUUG@LB@3'-UUU...UAGAC A -5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -10.09 kcal/mol@LB@Hybridization Energy -16.49 kcal/mol@LB@Unfolding Energy - mRNA 2.17136 kcal/mol@LB@Unfolding Energy - sRNA 4.22784 kcal/mol@LB@@LB@Position - mRNA 180 -- 205@LB@Position - sRNA 1 -- 20@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 7 -- 13@LB@ |
26 |
0.00144 |
0.1863 |
b4406 |
yaeP |
-8.75 |
0.213688 |
187 -- 204 |
2 -- 20 |
UPF0253 family protein |
|
_____________186_________________205\n_____________|___________________|\n5'-ACC...AGUGC_____G_____________AAAAA...UGC-3'\n______________UGACA__GAGGGCAUGUGG\n______________|||||__:|:|||||:|::\n______________ACUGU__UUUCCGUAUAUU\n3'-UUU...UAGAC_____UA____________G-5'\n_____________|___________________|\n_____________21__________________1\n |
197 -- 203 |
3 -- 9 |
-20.0716 kcal/mol |
7.09254 kcal/mol |
4.22649 kcal/mol |
186 205@LB@ | |@LB@5'-ACC...AGUGC G AAAAA...UGC-3'@LB@ UGACA GAGGGCAUGUGG@LB@ ||||| :|:|||||:|::@LB@ ACUGU UUUCCGUAUAUU@LB@3'-UUU...UAGAC UA G-5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -8.75 kcal/mol@LB@Hybridization Energy -20.0716 kcal/mol@LB@Unfolding Energy - mRNA 7.09254 kcal/mol@LB@Unfolding Energy - sRNA 4.22649 kcal/mol@LB@@LB@Position - mRNA 187 -- 204@LB@Position - sRNA 2 -- 20@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 3 -- 9@LB@ |
27 |
0.001616 |
0.2012 |
b0085 |
murE |
-13.53 |
0.018874 |
165 -- 198 |
1 -- 33 |
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase |
|
_____________164_________________________________199\n_____________|___________________________________|\n5'-UGC...CGAUA_________________U___C______AGGG___AGGUG...CGG-3'\n______________AAAAU_GAAUUUGUGAU_AAU_AAGGCG____GAC\n______________|||||_:|||:|||||:_|||_|||||:____:||\n______________UUUUA_UUUAGACACUG_UUA_UUCCGU____UUG\n3'-UUU...UUGUC_____U_______________U______AUA____-5'\n_____________|__________________________________|\n_____________34_________________________________1\n |
174 -- 180 |
17 -- 23 |
-22.2929 kcal/mol |
3.71145 kcal/mol |
5.04823 kcal/mol |
164 199@LB@ | |@LB@5'-UGC...CGAUA U C AGGG AGGUG...CGG-3'@LB@ AAAAU GAAUUUGUGAU AAU AAGGCG GAC@LB@ ||||| :|||:|||||: ||| |||||: :||@LB@ UUUUA UUUAGACACUG UUA UUCCGU UUG@LB@3'-UUU...UUGUC U U AUA -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -13.53 kcal/mol@LB@Hybridization Energy -22.2929 kcal/mol@LB@Unfolding Energy - mRNA 3.71145 kcal/mol@LB@Unfolding Energy - sRNA 5.04823 kcal/mol@LB@@LB@Position - mRNA 165 -- 198@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 17 -- 23@LB@ |
28 |
0.001683 |
0.2021 |
b0166 |
dapD |
-9.25 |
0.172213 |
119 -- 166 |
9 -- 65 |
2 3 4 5-tetrahydropyridine-2-carboxylate N-succinyltransferase |
|
_____________118___________________________________________________________167\n_____________|_____________________________________________________________|\n5'-UUG...CAGCA_____UGC_____C_______A___A_____UC______________CAA___________GUGAU...AGG-3'\n______________GGAAG___AUCAG_GGU__UG_CAG_GGCCC____________AAUC____ACGAUAAAGG\n______________||||:___|||||_||:__||_||:_|||||____________||||____||:|||||||\n______________CCUUU___UAGUC_CCG__AC_GUU_CCGGG____________UUAG____UGUUAUUUCC\n3'-UUU...UACAA_____________A___UU______A_____UUGUCUUUUAUU____ACAC__________GUAUAUUG-5'\n_____________|_____________________________________________________________|\n_____________66____________________________________________________________8\n |
160 -- 166 |
9 -- 15 |
-36.4613 kcal/mol |
16.0785 kcal/mol |
11.1365 kcal/mol |
118 167@LB@ | |@LB@5'-UUG...CAGCA UGC C A A UC CAA GUGAU...AGG-3'@LB@ GGAAG AUCAG GGU UG CAG GGCCC AAUC ACGAUAAAGG@LB@ ||||: ||||| ||: || ||: ||||| |||| ||:|||||||@LB@ CCUUU UAGUC CCG AC GUU CCGGG UUAG UGUUAUUUCC@LB@3'-UUU...UACAA A UU A UUGUCUUUUAUU ACAC GUAUAUUG-5'@LB@ | |@LB@ 66 8@LB@@LB@@LB@Energy -9.25 kcal/mol@LB@Hybridization Energy -36.4613 kcal/mol@LB@Unfolding Energy - mRNA 16.0785 kcal/mol@LB@Unfolding Energy - sRNA 11.1365 kcal/mol@LB@@LB@Position - mRNA 119 -- 166@LB@Position - sRNA 9 -- 65@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 9 -- 15@LB@ |
29 |
0.001819 |
0.2065 |
b3648 |
gmk |
-8.89 |
0.201842 |
236 -- 243 |
51 -- 58 |
guanylate kinase |
|
_____________235______244\n_____________|________|\n5'-GUG...GCCCC________CGGGU...CCC-3'\n______________CAGUGGCG\n______________|||||||:\n______________GUCACCGU\n3'-UUU...UUUUA________UACGU...UUG-5'\n_____________|________|\n_____________59_______50\n |
237 -- 243 |
51 -- 57 |
-13.8917 kcal/mol |
2.3096 kcal/mol |
2.69685 kcal/mol |
235 244@LB@ | |@LB@5'-GUG...GCCCC CGGGU...CCC-3'@LB@ CAGUGGCG@LB@ |||||||:@LB@ GUCACCGU@LB@3'-UUU...UUUUA UACGU...UUG-5'@LB@ | |@LB@ 59 50@LB@@LB@@LB@Energy -8.89 kcal/mol@LB@Hybridization Energy -13.8917 kcal/mol@LB@Unfolding Energy - mRNA 2.3096 kcal/mol@LB@Unfolding Energy - sRNA 2.69685 kcal/mol@LB@@LB@Position - mRNA 236 -- 243@LB@Position - sRNA 51 -- 58@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 51 -- 57@LB@ |
30 |
0.001842 |
0.2065 |
b3574 |
yiaJ |
-8.97 |
0.194276 |
228 -- 279 |
20 -- 64 |
transcriptional repressor for the yiaKLMNO-lyxK-sgbHUE operon |
|
_____________227_____________________________________________________280\n_____________|_______________________________________________________|\n5'-CCC...AAAAA_____CG__A___________GAAAAAGAGC______C______CC_________UUCGC...UUG-3'\n______________GAGAA__AG_UGGC___GCAG__________GUCCAG_CGGAAG__AGAGUCUGU\n______________||:||__||_||||___|||:__________|:|||:_|:|||:__|:|:|||||\n______________CUUUU__UC_ACCG___CGUU__________CGGGUU_GUCUUU__UUUUAGACA\n3'-UUU...ACAAC_____AG_______UUA____AC_____________________UA_________CUGUU...UUG-5'\n_____________|_______________________________________________________|\n_____________65______________________________________________________19\n |
273 -- 279 |
20 -- 26 |
-33.3994 kcal/mol |
13.3805 kcal/mol |
11.0456 kcal/mol |
227 280@LB@ | |@LB@5'-CCC...AAAAA CG A GAAAAAGAGC C CC UUCGC...UUG-3'@LB@ GAGAA AG UGGC GCAG GUCCAG CGGAAG AGAGUCUGU@LB@ ||:|| || |||| |||: |:|||: |:|||: |:|:|||||@LB@ CUUUU UC ACCG CGUU CGGGUU GUCUUU UUUUAGACA@LB@3'-UUU...ACAAC AG UUA AC UA CUGUU...UUG-5'@LB@ | |@LB@ 65 19@LB@@LB@@LB@Energy -8.97 kcal/mol@LB@Hybridization Energy -33.3994 kcal/mol@LB@Unfolding Energy - mRNA 13.3805 kcal/mol@LB@Unfolding Energy - sRNA 11.0456 kcal/mol@LB@@LB@Position - mRNA 228 -- 279@LB@Position - sRNA 20 -- 64@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 20 -- 26@LB@ |
31 |
0.001906 |
0.2067 |
b0198 |
metI |
-9.82 |
0.132421 |
237 -- 257 |
48 -- 68 |
DL-methionine transporter subunit |
|
_____________236____________________258\n_____________|______________________|\n5'-UCA...GUGGC__A__________C________ACCUU...CGG-3'\n______________GU_UGGGAAA_CG_UGGCAAUG\n______________||_|||:|||_|:_||||||||\n______________CA_ACCUUUU_GU_ACCGUUAC\n3'-UUU...AUAUA__________A__C________GUUAC...UUG-5'\n_____________|______________________|\n_____________69_____________________47\n |
251 -- 257 |
48 -- 54 |
-20.2902 kcal/mol |
6.26471 kcal/mol |
4.20468 kcal/mol |
236 258@LB@ | |@LB@5'-UCA...GUGGC A C ACCUU...CGG-3'@LB@ GU UGGGAAA CG UGGCAAUG@LB@ || |||:||| |: ||||||||@LB@ CA ACCUUUU GU ACCGUUAC@LB@3'-UUU...AUAUA A C GUUAC...UUG-5'@LB@ | |@LB@ 69 47@LB@@LB@@LB@Energy -9.82 kcal/mol@LB@Hybridization Energy -20.2902 kcal/mol@LB@Unfolding Energy - mRNA 6.26471 kcal/mol@LB@Unfolding Energy - sRNA 4.20468 kcal/mol@LB@@LB@Position - mRNA 237 -- 257@LB@Position - sRNA 48 -- 68@LB@Position Seed - mRNA 251 -- 257@LB@Position Seed - sRNA 48 -- 54@LB@ |
32 |
0.002002 |
0.2088 |
b0423 |
thiI |
-12.47 |
0.034301 |
40 -- 74 |
41 -- 65 |
tRNA s(4)U8 sulfurtransferase |
|
_____________39_____________________________________75\n_____________|______________________________________|\n5'-AUG...GUAAC___C____________AUAGCAAAUAACGC________AAGGU...UUU-3'\n______________GGA___UCAG_GGCAA______________GCAAUGGU\n______________|||___||||_|||||______________|||||||:\n______________CCU___AGUC_CCGUU______________CGUUACCG\n3'-UUU...UACAA___UUU____A_____A_____________________GGUUG...UUG-5'\n_____________|______________________________________|\n_____________66_____________________________________40\n |
68 -- 74 |
41 -- 47 |
-23.8518 kcal/mol |
5.56921 kcal/mol |
5.80973 kcal/mol |
39 75@LB@ | |@LB@5'-AUG...GUAAC C AUAGCAAAUAACGC AAGGU...UUU-3'@LB@ GGA UCAG GGCAA GCAAUGGU@LB@ ||| |||| ||||| |||||||:@LB@ CCU AGUC CCGUU CGUUACCG@LB@3'-UUU...UACAA UUU A A GGUUG...UUG-5'@LB@ | |@LB@ 66 40@LB@@LB@@LB@Energy -12.47 kcal/mol@LB@Hybridization Energy -23.8518 kcal/mol@LB@Unfolding Energy - mRNA 5.56921 kcal/mol@LB@Unfolding Energy - sRNA 5.80973 kcal/mol@LB@@LB@Position - mRNA 40 -- 74@LB@Position - sRNA 41 -- 65@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 41 -- 47@LB@ |
34 |
0.002116 |
0.2088 |
b0081 |
mraZ |
-11.86 |
0.047767 |
154 -- 189 |
9 -- 59 |
RsmH methytransferase inhibitor |
|
_____________153___________________________________________________190\n_____________|_____________________________________________________|\n5'-GAU...UCCUU_______G__AU_________AA_____________________G________GUGAG...AAA-3'\n______________UCAGUGG_AA__UGUGG_GGC__A________________GUGG_AAUAAGGG\n______________|||||||_||__||:::_|||__|________________|||:_|||||:||\n______________AGUCACC_UU__ACGUU_CCG__U________________CACU_UUAUUUCC\n3'-UUU...CUUUU_______G_________A___GG_UGUCUUUUAUUUUAGA____G________GUAUAUUG-5'\n_____________|_____________________________________________________|\n_____________60____________________________________________________8\n |
183 -- 189 |
9 -- 15 |
-29.7093 kcal/mol |
6.7157 kcal/mol |
11.1344 kcal/mol |
153 190@LB@ | |@LB@5'-GAU...UCCUU G AU AA G GUGAG...AAA-3'@LB@ UCAGUGG AA UGUGG GGC A GUGG AAUAAGGG@LB@ ||||||| || ||::: ||| | |||: |||||:||@LB@ AGUCACC UU ACGUU CCG U CACU UUAUUUCC@LB@3'-UUU...CUUUU G A GG UGUCUUUUAUUUUAGA G GUAUAUUG-5'@LB@ | |@LB@ 60 8@LB@@LB@@LB@Energy -11.86 kcal/mol@LB@Hybridization Energy -29.7093 kcal/mol@LB@Unfolding Energy - mRNA 6.7157 kcal/mol@LB@Unfolding Energy - sRNA 11.1344 kcal/mol@LB@@LB@Position - mRNA 154 -- 189@LB@Position - sRNA 9 -- 59@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 9 -- 15@LB@ |
35 |
0.002227 |
0.2088 |
b1482 |
osmC |
-7.15 |
0.399399 |
183 -- 208 |
14 -- 42 |
lipoyl-dependent Cys-based peroxidase hydroperoxide resistance; salt-shock inducible membrane protein; peroxiredoxin |
|
_____________182___________________________209\n_____________|_____________________________|\n5'-UAG...UUUAA_____________GCAACAA_________CCAUA...CGU-3'\n______________GCCC_ACAGGAGA_________UGACAAU\n______________||||_||||:|:|_________|||||||\n______________CGGG_UGUCUUUU_________ACUGUUA\n3'-UUU...GUUAC____U________AUUUUAGAC_______UUUCC...UUG-5'\n_____________|_____________________________|\n_____________43____________________________13\n |
202 -- 208 |
14 -- 20 |
-22.1887 kcal/mol |
4.46968 kcal/mol |
10.5676 kcal/mol |
182 209@LB@ | |@LB@5'-UAG...UUUAA GCAACAA CCAUA...CGU-3'@LB@ GCCC ACAGGAGA UGACAAU@LB@ |||| ||||:|:| |||||||@LB@ CGGG UGUCUUUU ACUGUUA@LB@3'-UUU...GUUAC U AUUUUAGAC UUUCC...UUG-5'@LB@ | |@LB@ 43 13@LB@@LB@@LB@Energy -7.15 kcal/mol@LB@Hybridization Energy -22.1887 kcal/mol@LB@Unfolding Energy - mRNA 4.46968 kcal/mol@LB@Unfolding Energy - sRNA 10.5676 kcal/mol@LB@@LB@Position - mRNA 183 -- 208@LB@Position - sRNA 14 -- 42@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 14 -- 20@LB@ |
36 |
0.002273 |
0.2088 |
b4138 |
dcuA |
-11.14 |
0.069498 |
259 -- 284 |
41 -- 65 |
C4-dicarboxylate antiporter |
|
_____________258__________________________285\n_____________|____________________________|\n5'-AAC...AUUGG_______A___AUU___UU_________GGAUU...UGG-3'\n______________GGGGAAU_GGU___GGU__UGCA__GGC\n______________||::|||_:||___||:__||||__|||\n______________CCUUUUA_UCA___CCG__ACGU__CCG\n3'-UUU...UACAA_______G_________UU____UA___GGUUG...UUG-5'\n_____________|____________________________|\n_____________66___________________________40\n |
259 -- 265 |
59 -- 65 |
-20.3442 kcal/mol |
3.39574 kcal/mol |
5.80973 kcal/mol |
258 285@LB@ | |@LB@5'-AAC...AUUGG A AUU UU GGAUU...UGG-3'@LB@ GGGGAAU GGU GGU UGCA GGC@LB@ ||::||| :|| ||: |||| |||@LB@ CCUUUUA UCA CCG ACGU CCG@LB@3'-UUU...UACAA G UU UA GGUUG...UUG-5'@LB@ | |@LB@ 66 40@LB@@LB@@LB@Energy -11.14 kcal/mol@LB@Hybridization Energy -20.3442 kcal/mol@LB@Unfolding Energy - mRNA 3.39574 kcal/mol@LB@Unfolding Energy - sRNA 5.80973 kcal/mol@LB@@LB@Position - mRNA 259 -- 284@LB@Position - sRNA 41 -- 65@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 59 -- 65@LB@ |
37 |
0.002433 |
0.2088 |
b2825 |
ppdB |
-7.88 |
0.305516 |
133 -- 146 |
40 -- 54 |
putative prepilin peptidase-dependent protein |
|
_____________132_____________147\n_____________|_______________|\n5'-CAU...CAACG_______________GGUGG...CGU-3'\n______________GGCGA_GUGGUGGCU\n______________|||:|_|:::||||:\n______________CCGUU_CGUUACCGG\n3'-UUU...AGUCA_____A_________GUUGU...UUG-5'\n_____________|_______________|\n_____________55______________39\n |
140 -- 146 |
40 -- 46 |
-19.4494 kcal/mol |
6.98652 kcal/mol |
4.58617 kcal/mol |
132 147@LB@ | |@LB@5'-CAU...CAACG GGUGG...CGU-3'@LB@ GGCGA GUGGUGGCU@LB@ |||:| |:::||||:@LB@ CCGUU CGUUACCGG@LB@3'-UUU...AGUCA A GUUGU...UUG-5'@LB@ | |@LB@ 55 39@LB@@LB@@LB@Energy -7.88 kcal/mol@LB@Hybridization Energy -19.4494 kcal/mol@LB@Unfolding Energy - mRNA 6.98652 kcal/mol@LB@Unfolding Energy - sRNA 4.58617 kcal/mol@LB@@LB@Position - mRNA 133 -- 146@LB@Position - sRNA 40 -- 54@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 40 -- 46@LB@ |
38 |
0.00253 |
0.2088 |
b3789 |
rffH |
-8.84 |
0.205897 |
98 -- 106 |
51 -- 59 |
glucose-1-phosphate thymidylyltransferase |
|
_____________97________107\n_____________|_________|\n5'-GGC...ACGGU_________UCUGG...UGA-3'\n______________UCAGUGGUA\n______________|||||||:|\n______________AGUCACCGU\n3'-UUU...CUUUU_________UACGU...UUG-5'\n_____________|_________|\n_____________60________50\n |
100 -- 106 |
51 -- 57 |
-13.9039 kcal/mol |
2.34576 kcal/mol |
2.71896 kcal/mol |
97 107@LB@ | |@LB@5'-GGC...ACGGU UCUGG...UGA-3'@LB@ UCAGUGGUA@LB@ |||||||:|@LB@ AGUCACCGU@LB@3'-UUU...CUUUU UACGU...UUG-5'@LB@ | |@LB@ 60 50@LB@@LB@@LB@Energy -8.84 kcal/mol@LB@Hybridization Energy -13.9039 kcal/mol@LB@Unfolding Energy - mRNA 2.34576 kcal/mol@LB@Unfolding Energy - sRNA 2.71896 kcal/mol@LB@@LB@Position - mRNA 98 -- 106@LB@Position - sRNA 51 -- 59@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 51 -- 57@LB@ |
39 |
0.002581 |
0.2088 |
b3991 |
thiG |
-13.93 |
0.014953 |
9 -- 37 |
40 -- 69 |
thiamine biosynthesis ThiGH complex subunit |
|
_____________8_______________________________38\n_____________|_______________________________|\n___5'-GCAGAUCC____UAAC_____A_____________C___GCCGG...CCG-3'\n______________UGUU____GAUCA___GCGAUGCAGUG_GCC\n______________||||____:||||___||:|||||:||_|||\n______________ACAA____UUAGU___CGUUACGUUAC_CGG\n3'-UUU...AAUAU____CCUU_____CAC_______________GUUGU...UUG-5'\n_____________|_______________________________|\n_____________70______________________________39\n |
27 -- 33 |
43 -- 49 |
-27.0914 kcal/mol |
6.322 kcal/mol |
6.83756 kcal/mol |
8 38@LB@ | |@LB@ 5'-GCAGAUCC UAAC A C GCCGG...CCG-3'@LB@ UGUU GAUCA GCGAUGCAGUG GCC@LB@ |||| :|||| ||:|||||:|| |||@LB@ ACAA UUAGU CGUUACGUUAC CGG@LB@3'-UUU...AAUAU CCUU CAC GUUGU...UUG-5'@LB@ | |@LB@ 70 39@LB@@LB@@LB@Energy -13.93 kcal/mol@LB@Hybridization Energy -27.0914 kcal/mol@LB@Unfolding Energy - mRNA 6.322 kcal/mol@LB@Unfolding Energy - sRNA 6.83756 kcal/mol@LB@@LB@Position - mRNA 9 -- 37@LB@Position - sRNA 40 -- 69@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 43 -- 49@LB@ |
40 |
0.00261 |
0.2088 |
b3008 |
metC |
-11.48 |
0.058180 |
224 -- 274 |
11 -- 59 |
cystathionine beta-lyase PLP-dependent |
|
_____________223___________________________________________________275\n_____________|_____________________________________________________|\n5'-CGA...GAUAC___AC____G__________A_G_____A______CAC___C_GC________UAGCG...CGC-3'\n______________UCA__UGGU_AAUGCA__GG_C_CAGCA_AAAAUA___UCU_G__GCGGUAAA\n______________|||__|||:_||||||__||_|_||:||_||||||___|||_|__:|::||||\n______________AGU__ACCG_UUACGU__CC_G_GUUGU_UUUUAU___AGA_C__UGUUAUUU\n3'-UUU...CUUUU___C____________UA____G_____C______UUU_____AC________CCGUA...UUG-5'\n_____________|_____________________________________________________|\n_____________60____________________________________________________10\n |
268 -- 274 |
11 -- 17 |
-31.6805 kcal/mol |
9.07324 kcal/mol |
11.1233 kcal/mol |
223 275@LB@ | |@LB@5'-CGA...GAUAC AC G A G A CAC C GC UAGCG...CGC-3'@LB@ UCA UGGU AAUGCA GG C CAGCA AAAAUA UCU G GCGGUAAA@LB@ ||| |||: |||||| || | ||:|| |||||| ||| | :|::||||@LB@ AGU ACCG UUACGU CC G GUUGU UUUUAU AGA C UGUUAUUU@LB@3'-UUU...CUUUU C UA G C UUU AC CCGUA...UUG-5'@LB@ | |@LB@ 60 10@LB@@LB@@LB@Energy -11.48 kcal/mol@LB@Hybridization Energy -31.6805 kcal/mol@LB@Unfolding Energy - mRNA 9.07324 kcal/mol@LB@Unfolding Energy - sRNA 11.1233 kcal/mol@LB@@LB@Position - mRNA 224 -- 274@LB@Position - sRNA 11 -- 59@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 11 -- 17@LB@ |
41 |
0.002667 |
0.2088 |
b2475 |
ypfJ |
-12.17 |
0.040379 |
232 -- 266 |
38 -- 70 |
putative neutral zinc metallopeptidase |
|
_____________231___________________________________267\n_____________|_____________________________________|\n5'-GUC...UGACA_______________GC____CA__UCU_________UCUAU...GCG-3'\n______________AUGUU_GAAGA_CAG__GCAA__GC___GGUGGUCCA\n______________|||||_|||:|_|||__||||__||___::|||:|||\n______________UACAA_CUUUU_GUC__CGUU__CG___UUACCGGGU\n3'-UUU...AAAUA_____C_____A___AC____A_______________UGUCU...UUG-5'\n_____________|_____________________________________|\n_____________71____________________________________37\n |
260 -- 266 |
38 -- 44 |
-27.4905 kcal/mol |
8.02084 kcal/mol |
7.29667 kcal/mol |
231 267@LB@ | |@LB@5'-GUC...UGACA GC CA UCU UCUAU...GCG-3'@LB@ AUGUU GAAGA CAG GCAA GC GGUGGUCCA@LB@ ||||| |||:| ||| |||| || ::|||:|||@LB@ UACAA CUUUU GUC CGUU CG UUACCGGGU@LB@3'-UUU...AAAUA C A AC A UGUCU...UUG-5'@LB@ | |@LB@ 71 37@LB@@LB@@LB@Energy -12.17 kcal/mol@LB@Hybridization Energy -27.4905 kcal/mol@LB@Unfolding Energy - mRNA 8.02084 kcal/mol@LB@Unfolding Energy - sRNA 7.29667 kcal/mol@LB@@LB@Position - mRNA 232 -- 266@LB@Position - sRNA 38 -- 70@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 38 -- 44@LB@ |
42 |
0.002679 |
0.2088 |
b1427 |
rimL |
-12.89 |
0.027177 |
178 -- 217 |
11 -- 49 |
ribosomal-protein-L7/L12-serine acetyltransferase |
|
_____________177_______________________________________218\n_____________|_________________________________________|\n5'-GAU...ACAAC________AU____U___________GA___AA________AGUAA...CCU-3'\n______________UGC_AUGG__UGAC_GGAGAUAAGAU__CUG__ACGAUAAA\n______________|||_||||__::||_|:|:||||:||__|||__||:|||||\n______________ACG_UACC__GUUG_CUUUUAUUUUA__GAC__UGUUAUUU\n3'-UUU...CCGUU___U____GG____U________________AC________CCGUA...UUG-5'\n_____________|_________________________________________|\n_____________50________________________________________10\n |
211 -- 217 |
11 -- 17 |
-27.9575 kcal/mol |
3.9779 kcal/mol |
11.0867 kcal/mol |
177 218@LB@ | |@LB@5'-GAU...ACAAC AU U GA AA AGUAA...CCU-3'@LB@ UGC AUGG UGAC GGAGAUAAGAU CUG ACGAUAAA@LB@ ||| |||| ::|| |:|:||||:|| ||| ||:|||||@LB@ ACG UACC GUUG CUUUUAUUUUA GAC UGUUAUUU@LB@3'-UUU...CCGUU U GG U AC CCGUA...UUG-5'@LB@ | |@LB@ 50 10@LB@@LB@@LB@Energy -12.89 kcal/mol@LB@Hybridization Energy -27.9575 kcal/mol@LB@Unfolding Energy - mRNA 3.9779 kcal/mol@LB@Unfolding Energy - sRNA 11.0867 kcal/mol@LB@@LB@Position - mRNA 178 -- 217@LB@Position - sRNA 11 -- 49@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 11 -- 17@LB@ |
43 |
0.002722 |
0.2088 |
b0192 |
nlpE |
-8.83 |
0.206883 |
4 -- 33 |
38 -- 65 |
lipoprotein involved with copper homeostasis and adhesion |
|
_____________3_______________________________34\n_____________|_______________________________|\n________5'-UCA____CUGAACC_____A____CUC_______GCUGG...CGC-3'\n______________GGAA________GCGA_GCAG___UGGCCCG\n______________||||________||:|_|||:___||||||:\n______________CCUU________CGUU_CGUU___ACCGGGU\n3'-UUU...UACAA____UUAGUCAC____A______________UGUCU...UUG-5'\n_____________|_______________________________|\n_____________66______________________________37\n |
27 -- 33 |
38 -- 44 |
-23.0011 kcal/mol |
7.49976 kcal/mol |
6.67322 kcal/mol |
3 34@LB@ | |@LB@ 5'-UCA CUGAACC A CUC GCUGG...CGC-3'@LB@ GGAA GCGA GCAG UGGCCCG@LB@ |||| ||:| |||: ||||||:@LB@ CCUU CGUU CGUU ACCGGGU@LB@3'-UUU...UACAA UUAGUCAC A UGUCU...UUG-5'@LB@ | |@LB@ 66 37@LB@@LB@@LB@Energy -8.83 kcal/mol@LB@Hybridization Energy -23.0011 kcal/mol@LB@Unfolding Energy - mRNA 7.49976 kcal/mol@LB@Unfolding Energy - sRNA 6.67322 kcal/mol@LB@@LB@Position - mRNA 4 -- 33@LB@Position - sRNA 38 -- 65@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 38 -- 44@LB@ |
44 |
0.002732 |
0.2088 |
b3450 |
ugpC |
-10.48 |
0.096645 |
106 -- 116 |
47 -- 57 |
sn-glycerol-3-phosphate ABC transporter ATPase |
|
_____________105_________117\n_____________|___________|\n5'-GUG...GUGAU___________UGUUA...UCG-3'\n______________GGUGGCGAUGU\n______________:|||||:|||:\n______________UCACCGUUACG\n3'-UUU...UUUAG___________UUACC...UUG-5'\n_____________|___________|\n_____________58__________46\n |
110 -- 116 |
47 -- 53 |
-17.083 kcal/mol |
3.56469 kcal/mol |
3.03952 kcal/mol |
105 117@LB@ | |@LB@5'-GUG...GUGAU UGUUA...UCG-3'@LB@ GGUGGCGAUGU@LB@ :|||||:|||:@LB@ UCACCGUUACG@LB@3'-UUU...UUUAG UUACC...UUG-5'@LB@ | |@LB@ 58 46@LB@@LB@@LB@Energy -10.48 kcal/mol@LB@Hybridization Energy -17.083 kcal/mol@LB@Unfolding Energy - mRNA 3.56469 kcal/mol@LB@Unfolding Energy - sRNA 3.03952 kcal/mol@LB@@LB@Position - mRNA 106 -- 116@LB@Position - sRNA 47 -- 57@LB@Position Seed - mRNA 110 -- 116@LB@Position Seed - sRNA 47 -- 53@LB@ |
45 |
0.002879 |
0.2151 |
b3319 |
rplD |
-8.41 |
0.246804 |
191 -- 204 |
42 -- 54 |
50S ribosomal subunit protein L4 |
|
_____________190____________205\n_____________|______________|\n5'-UCA...CGUAA__A___A_______AAUUA...UUG-3'\n______________GG_GAU_GCAAUGG\n______________||_:||_|||||||\n______________CC_UUA_CGUUACC\n3'-UUU...AGUCA__G___________GGGUU...UUG-5'\n_____________|______________|\n_____________55_____________41\n |
198 -- 204 |
42 -- 48 |
-13.9027 kcal/mol |
1.99374 kcal/mol |
3.49932 kcal/mol |
190 205@LB@ | |@LB@5'-UCA...CGUAA A A AAUUA...UUG-3'@LB@ GG GAU GCAAUGG@LB@ || :|| |||||||@LB@ CC UUA CGUUACC@LB@3'-UUU...AGUCA G GGGUU...UUG-5'@LB@ | |@LB@ 55 41@LB@@LB@@LB@Energy -8.41 kcal/mol@LB@Hybridization Energy -13.9027 kcal/mol@LB@Unfolding Energy - mRNA 1.99374 kcal/mol@LB@Unfolding Energy - sRNA 3.49932 kcal/mol@LB@@LB@Position - mRNA 191 -- 204@LB@Position - sRNA 42 -- 54@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 42 -- 48@LB@ |
46 |
0.003168 |
0.2306 |
b3066 |
dnaG |
-7.10 |
0.407270 |
188 -- 205 |
41 -- 63 |
DNA primase |
|
_____________187_____________________206\n_____________|_______________________|\n5'-ACC...UGCUA____________CU_________UGGAC...GCA-3'\n______________AAAAUCGG_GGC______AUGGC\n______________||||||:|_|||______|||||\n______________UUUUAGUC_CCG______UACCG\n3'-UUU...CAACC________A___UUACGU_____GGUUG...UUG-5'\n_____________|_______________________|\n_____________64______________________40\n |
189 -- 195 |
56 -- 62 |
-16.4791 kcal/mol |
5.10709 kcal/mol |
4.27657 kcal/mol |
187 206@LB@ | |@LB@5'-ACC...UGCUA CU UGGAC...GCA-3'@LB@ AAAAUCGG GGC AUGGC@LB@ ||||||:| ||| |||||@LB@ UUUUAGUC CCG UACCG@LB@3'-UUU...CAACC A UUACGU GGUUG...UUG-5'@LB@ | |@LB@ 64 40@LB@@LB@@LB@Energy -7.10 kcal/mol@LB@Hybridization Energy -16.4791 kcal/mol@LB@Unfolding Energy - mRNA 5.10709 kcal/mol@LB@Unfolding Energy - sRNA 4.27657 kcal/mol@LB@@LB@Position - mRNA 188 -- 205@LB@Position - sRNA 41 -- 63@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 56 -- 62@LB@ |
47 |
0.003222 |
0.2306 |
b1667 |
ydhR |
-16.61 |
0.002759 |
245 -- 266 |
34 -- 55 |
putative monooxygenase |
|
_____________244____________________267\n_____________|______________________|\n5'-UUG...CCAUU______C_________G_____CUUAA...AAC-3'\n______________UGGCGA_GCAAUGGCU_AGCAG\n______________||||:|_||||||||:_|:|||\n______________ACCGUU_CGUUACCGG_UUGUC\n3'-UUU...UAGUC______A_________G_____UUUUA...UUG-5'\n_____________|______________________|\n_____________56_____________________33\n |
254 -- 260 |
40 -- 46 |
-33.2096 kcal/mol |
7.64311 kcal/mol |
8.95438 kcal/mol |
244 267@LB@ | |@LB@5'-UUG...CCAUU C G CUUAA...AAC-3'@LB@ UGGCGA GCAAUGGCU AGCAG@LB@ ||||:| ||||||||: |:|||@LB@ ACCGUU CGUUACCGG UUGUC@LB@3'-UUU...UAGUC A G UUUUA...UUG-5'@LB@ | |@LB@ 56 33@LB@@LB@@LB@Energy -16.61 kcal/mol@LB@Hybridization Energy -33.2096 kcal/mol@LB@Unfolding Energy - mRNA 7.64311 kcal/mol@LB@Unfolding Energy - sRNA 8.95438 kcal/mol@LB@@LB@Position - mRNA 245 -- 266@LB@Position - sRNA 34 -- 55@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 40 -- 46@LB@ |
48 |
0.003417 |
0.237 |
b0002 |
thrA |
-15.68 |
0.005086 |
222 -- 242 |
46 -- 65 |
Bifunctional aspartokinase/homoserine dehydrogenase 1 |
|
_____________221___________________243\n_____________|_____________________|\n5'-CCA...UCGGC__UAC___________A____GAACG...UGG-3'\n______________GG___AUCAGUGGCAA_UGCA\n______________||___|||||||||||_||||\n______________CC___UAGUCACCGUU_ACGU\n3'-UUU...UACAA__UUU________________UACCG...UUG-5'\n_____________|_____________________|\n_____________66____________________45\n |
231 -- 237 |
50 -- 56 |
-24.9116 kcal/mol |
5.14883 kcal/mol |
4.07994 kcal/mol |
221 243@LB@ | |@LB@5'-CCA...UCGGC UAC A GAACG...UGG-3'@LB@ GG AUCAGUGGCAA UGCA@LB@ || ||||||||||| ||||@LB@ CC UAGUCACCGUU ACGU@LB@3'-UUU...UACAA UUU UACCG...UUG-5'@LB@ | |@LB@ 66 45@LB@@LB@@LB@Energy -15.68 kcal/mol@LB@Hybridization Energy -24.9116 kcal/mol@LB@Unfolding Energy - mRNA 5.14883 kcal/mol@LB@Unfolding Energy - sRNA 4.07994 kcal/mol@LB@@LB@Position - mRNA 222 -- 242@LB@Position - sRNA 46 -- 65@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 50 -- 56@LB@ |
49 |
0.003464 |
0.237 |
b4260 |
pepA |
-9.32 |
0.166975 |
186 -- 204 |
42 -- 59 |
multifunctional aminopeptidase A: a cyteinylglycinase transcription regulator and site-specific recombination factor |
|
_____________185__________________205\n_____________|____________________|\n5'-UUA...AAGAU____GA_C____________AGUUU...AAC-3'\n______________UCAG__G_GUAGUGCA_UGG\n______________||||__|_|:|:||||_|||\n______________AGUC__C_CGUUACGU_ACC\n3'-UUU...CUUUU____A___________U___GGGUU...UUG-5'\n_____________|____________________|\n_____________60___________________41\n |
195 -- 201 |
46 -- 52 |
-17.4947 kcal/mol |
4.48384 kcal/mol |
3.69565 kcal/mol |
185 205@LB@ | |@LB@5'-UUA...AAGAU GA C AGUUU...AAC-3'@LB@ UCAG G GUAGUGCA UGG@LB@ |||| | |:|:|||| |||@LB@ AGUC C CGUUACGU ACC@LB@3'-UUU...CUUUU A U GGGUU...UUG-5'@LB@ | |@LB@ 60 41@LB@@LB@@LB@Energy -9.32 kcal/mol@LB@Hybridization Energy -17.4947 kcal/mol@LB@Unfolding Energy - mRNA 4.48384 kcal/mol@LB@Unfolding Energy - sRNA 3.69565 kcal/mol@LB@@LB@Position - mRNA 186 -- 204@LB@Position - sRNA 42 -- 59@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 46 -- 52@LB@ |
50 |
0.003719 |
0.237 |
b3705 |
yidC |
-9.36 |
0.163545 |
61 -- 100 |
7 -- 65 |
membrane protein insertase |
|
_____________60__________________________________________________________101\n_____________|___________________________________________________________|\n5'-CGC...GCUAC____UU____A____U____CA_____________________________________GUUGG...CCC-3'\n______________GGAA_____G_GGCA_UGCG__GGUUU___GGA___________GUGAUA__AAAGGCA\n______________||||_____|_||||_|||:__||:::___:||___________||||:|__|||||||\n______________CCUU_____C_CCGU_ACGU__CCGGG___UCU___________CACUGU__UUUCCGU\n3'-UUU...UACAA____UUAGU_A____U____UA_____UUG___UUUAUUUUAGA______UA_______AUAUUG-5'\n_____________|___________________________________________________________|\n_____________66__________________________________________________________6\n |
94 -- 100 |
7 -- 13 |
-30.9326 kcal/mol |
9.41756 kcal/mol |
12.1538 kcal/mol |
60 101@LB@ | |@LB@5'-CGC...GCUAC UU A U CA GUUGG...CCC-3'@LB@ GGAA G GGCA UGCG GGUUU GGA GUGAUA AAAGGCA@LB@ |||| | |||| |||: ||::: :|| ||||:| |||||||@LB@ CCUU C CCGU ACGU CCGGG UCU CACUGU UUUCCGU@LB@3'-UUU...UACAA UUAGU A U UA UUG UUUAUUUUAGA UA AUAUUG-5'@LB@ | |@LB@ 66 6@LB@@LB@@LB@Energy -9.36 kcal/mol@LB@Hybridization Energy -30.9326 kcal/mol@LB@Unfolding Energy - mRNA 9.41756 kcal/mol@LB@Unfolding Energy - sRNA 12.1538 kcal/mol@LB@@LB@Position - mRNA 61 -- 100@LB@Position - sRNA 7 -- 65@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 7 -- 13@LB@ |
51 |
0.003814 |
0.237 |
b3888 |
yiiD |
-11.06 |
0.072417 |
149 -- 179 |
39 -- 72 |
GNAT family putative N-acetyltransferase |
|
_____________148_________________________________180\n_____________|___________________________________|\n5'-UUU...UGCGG_____CA__U______C___U______________CGUGA...AUC-3'\n______________AUAUG__GG___AUCG_UGG_CAAUG__AUGGCCC\n______________|||||__||___|||:_|||_|||||__|||||||\n______________UAUAC__CC___UAGU_ACC_GUUAC__UACCGGG\n3'-UUU...AAAAA_____AA__UUU____C_________GU_______UUGUC...UUG-5'\n_____________|___________________________________|\n_____________73__________________________________38\n |
173 -- 179 |
39 -- 45 |
-28.8621 kcal/mol |
10.5098 kcal/mol |
7.29447 kcal/mol |
148 180@LB@ | |@LB@5'-UUU...UGCGG CA U C U CGUGA...AUC-3'@LB@ AUAUG GG AUCG UGG CAAUG AUGGCCC@LB@ ||||| || |||: ||| ||||| |||||||@LB@ UAUAC CC UAGU ACC GUUAC UACCGGG@LB@3'-UUU...AAAAA AA UUU C GU UUGUC...UUG-5'@LB@ | |@LB@ 73 38@LB@@LB@@LB@Energy -11.06 kcal/mol@LB@Hybridization Energy -28.8621 kcal/mol@LB@Unfolding Energy - mRNA 10.5098 kcal/mol@LB@Unfolding Energy - sRNA 7.29447 kcal/mol@LB@@LB@Position - mRNA 149 -- 179@LB@Position - sRNA 39 -- 72@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 39 -- 45@LB@ |
52 |
0.003856 |
0.237 |
b2844 |
yqeF |
-12.45 |
0.034706 |
43 -- 109 |
1 -- 67 |
short chain acyltransferase |
|
_____________42______________________________________________________________________110\n_____________|_______________________________________________________________________|\n5'-CCA...CUCUA____U__________________A_____U___U_CC___UAU____C____UGCUGCUC________UU_CUUUG...UCG-3'\n______________UUGG_GGGUUAGUGGU__UGCAA___CCU_ACG_G__AGU___GUCU_UGAC________AGGCAUAU__C\n______________||||_:::|:|||||:__|||||___||:_||:_|__|:|___:|||_||||________||||||||__|\n______________AACC_UUUAGUCACCG__ACGUU___GGG_UGU_C__UUA___UAGA_ACUG________UCCGUAUA__G\n3'-UUU...UAUAC____U___________UU_____ACC___U_____UU___UUU____C____UUAUU___________UU_-5'\n_____________|______________________________________________________________________|\n_____________68_____________________________________________________________________1\n |
100 -- 106 |
4 -- 10 |
-44.1841 kcal/mol |
19.5714 kcal/mol |
12.1612 kcal/mol |
42 110@LB@ | |@LB@5'-CCA...CUCUA U A U U CC UAU C UGCUGCUC UU CUUUG...UCG-3'@LB@ UUGG GGGUUAGUGGU UGCAA CCU ACG G AGU GUCU UGAC AGGCAUAU C@LB@ |||| :::|:|||||: ||||| ||: ||: | |:| :||| |||| |||||||| |@LB@ AACC UUUAGUCACCG ACGUU GGG UGU C UUA UAGA ACUG UCCGUAUA G@LB@3'-UUU...UAUAC U UU ACC U UU UUU C UUAUU UU -5'@LB@ | |@LB@ 68 1@LB@@LB@@LB@Energy -12.45 kcal/mol@LB@Hybridization Energy -44.1841 kcal/mol@LB@Unfolding Energy - mRNA 19.5714 kcal/mol@LB@Unfolding Energy - sRNA 12.1612 kcal/mol@LB@@LB@Position - mRNA 43 -- 109@LB@Position - sRNA 1 -- 67@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 4 -- 10@LB@ |
53 |
0.003903 |
0.237 |
b0946 |
zapC |
-7.74 |
0.322468 |
177 -- 206 |
45 -- 76 |
FtsZ stabilizer |
|
_____________176_________________________________207\n_____________|___________________________________|\n5'-AUU...UGCGG_______GG__AG______________A_______AUUAA...GUU-3'\n______________UUUUAUA__GU__GGGAGA_____GGC_GAUGCGA\n______________|||||||__||__||:|:|_____|||_:||||:|\n______________AAAAUAU__CA__CCUUUU_____CCG_UUACGUU\n3'-UUU...ACAGA_______A___A_______AGUCA___________ACCGG...UUG-5'\n_____________|___________________________________|\n_____________77__________________________________44\n |
200 -- 206 |
45 -- 51 |
-19.1898 kcal/mol |
6.23804 kcal/mol |
5.21532 kcal/mol |
176 207@LB@ | |@LB@5'-AUU...UGCGG GG AG A AUUAA...GUU-3'@LB@ UUUUAUA GU GGGAGA GGC GAUGCGA@LB@ ||||||| || ||:|:| ||| :||||:|@LB@ AAAAUAU CA CCUUUU CCG UUACGUU@LB@3'-UUU...ACAGA A A AGUCA ACCGG...UUG-5'@LB@ | |@LB@ 77 44@LB@@LB@@LB@Energy -7.74 kcal/mol@LB@Hybridization Energy -19.1898 kcal/mol@LB@Unfolding Energy - mRNA 6.23804 kcal/mol@LB@Unfolding Energy - sRNA 5.21532 kcal/mol@LB@@LB@Position - mRNA 177 -- 206@LB@Position - sRNA 45 -- 76@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 45 -- 51@LB@ |
54 |
0.003913 |
0.237 |
b0387 |
yaiI |
-8.67 |
0.221647 |
168 -- 177 |
9 -- 18 |
UPF0178 family protein |
|
_____________167________178\n_____________|__________|\n5'-CAC...GCGAC__________AUUAC...CAA-3'\n______________ACAAUAGAGG\n______________||||||:|||\n______________UGUUAUUUCC\n3'-UUU...GACAC__________GUAUAUUG-5'\n_____________|__________|\n_____________19_________8\n |
171 -- 177 |
9 -- 15 |
-10.6786 kcal/mol |
1.38452 kcal/mol |
0.627418 kcal/mol |
167 178@LB@ | |@LB@5'-CAC...GCGAC AUUAC...CAA-3'@LB@ ACAAUAGAGG@LB@ ||||||:|||@LB@ UGUUAUUUCC@LB@3'-UUU...GACAC GUAUAUUG-5'@LB@ | |@LB@ 19 8@LB@@LB@@LB@Energy -8.67 kcal/mol@LB@Hybridization Energy -10.6786 kcal/mol@LB@Unfolding Energy - mRNA 1.38452 kcal/mol@LB@Unfolding Energy - sRNA 0.627418 kcal/mol@LB@@LB@Position - mRNA 168 -- 177@LB@Position - sRNA 9 -- 18@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 9 -- 15@LB@ |
55 |
0.003921 |
0.237 |
b1781 |
yeaE |
-12.93 |
0.026626 |
223 -- 235 |
47 -- 59 |
aldo-keto reductase methylglyoxal to acetol NADPH-dependent |
|
_____________222___________236\n_____________|_____________|\n5'-GUU...UCAAU_____________CUCAC...CAG-3'\n______________UUAGUGGCGAUGU\n______________|:||||||:|||:\n______________AGUCACCGUUACG\n3'-UUU...CUUUU_____________UUACC...UUG-5'\n_____________|_____________|\n_____________60____________46\n |
229 -- 235 |
47 -- 53 |
-19.9127 kcal/mol |
3.5603 kcal/mol |
3.42309 kcal/mol |
222 236@LB@ | |@LB@5'-GUU...UCAAU CUCAC...CAG-3'@LB@ UUAGUGGCGAUGU@LB@ |:||||||:|||:@LB@ AGUCACCGUUACG@LB@3'-UUU...CUUUU UUACC...UUG-5'@LB@ | |@LB@ 60 46@LB@@LB@@LB@Energy -12.93 kcal/mol@LB@Hybridization Energy -19.9127 kcal/mol@LB@Unfolding Energy - mRNA 3.5603 kcal/mol@LB@Unfolding Energy - sRNA 3.42309 kcal/mol@LB@@LB@Position - mRNA 223 -- 235@LB@Position - sRNA 47 -- 59@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 47 -- 53@LB@ |
56 |
0.003989 |
0.237 |
b0453 |
ybaY |
-12.27 |
0.038324 |
59 -- 73 |
39 -- 55 |
outer membrane lipoprotein |
|
_____________58________________74\n_____________|_________________|\n5'-AAG...UCCGA_________________GAAUU...CAA-3'\n______________UGG__GUGCAAUGGUCU\n______________|||__:||||||||:|:\n______________ACC__UACGUUACCGGG\n3'-UUU...UAGUC___GU____________UUGUC...UUG-5'\n_____________|_________________|\n_____________56________________38\n |
67 -- 73 |
39 -- 45 |
-20.8095 kcal/mol |
3.77686 kcal/mol |
4.76312 kcal/mol |
58 74@LB@ | |@LB@5'-AAG...UCCGA GAAUU...CAA-3'@LB@ UGG GUGCAAUGGUCU@LB@ ||| :||||||||:|:@LB@ ACC UACGUUACCGGG@LB@3'-UUU...UAGUC GU UUGUC...UUG-5'@LB@ | |@LB@ 56 38@LB@@LB@@LB@Energy -12.27 kcal/mol@LB@Hybridization Energy -20.8095 kcal/mol@LB@Unfolding Energy - mRNA 3.77686 kcal/mol@LB@Unfolding Energy - sRNA 4.76312 kcal/mol@LB@@LB@Position - mRNA 59 -- 73@LB@Position - sRNA 39 -- 55@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 39 -- 45@LB@ |
57 |
0.004077 |
0.237 |
b4198 |
ulaF |
-9.90 |
0.127727 |
21 -- 37 |
42 -- 55 |
L-ribulose 5-phosphate 4-epimerase |
|
_____________20________________38\n_____________|_________________|\n5'-GUC...CCGUU_____AAG_________AUUUC...GCG-3'\n______________UGGCG___GUGUAGUGG\n______________||||:___:||:|:|||\n______________ACCGU___UACGUUACC\n3'-UUU...UAGUC_________________GGGUU...UUG-5'\n_____________|_________________|\n_____________56________________41\n |
31 -- 37 |
42 -- 48 |
-17.0201 kcal/mol |
3.6214 kcal/mol |
3.50097 kcal/mol |
20 38@LB@ | |@LB@5'-GUC...CCGUU AAG AUUUC...GCG-3'@LB@ UGGCG GUGUAGUGG@LB@ ||||: :||:|:|||@LB@ ACCGU UACGUUACC@LB@3'-UUU...UAGUC GGGUU...UUG-5'@LB@ | |@LB@ 56 41@LB@@LB@@LB@Energy -9.90 kcal/mol@LB@Hybridization Energy -17.0201 kcal/mol@LB@Unfolding Energy - mRNA 3.6214 kcal/mol@LB@Unfolding Energy - sRNA 3.50097 kcal/mol@LB@@LB@Position - mRNA 21 -- 37@LB@Position - sRNA 42 -- 55@LB@Position Seed - mRNA 31 -- 37@LB@Position Seed - sRNA 42 -- 48@LB@ |
58 |
0.004088 |
0.237 |
b0998 |
torD |
-12.26 |
0.038501 |
93 -- 144 |
1 -- 57 |
TorA-maturation chaperone |
|
_____________92__________________________________________________________145\n_____________|___________________________________________________________|\n5'-GGU...ACGCU_____AAAU__AGAA___A________C_______CAG________________U____GGCCC...CCA-3'\n______________GGUGG____UG_____GU_CAACGGAA_AGUGGAG___GUGAC______GGCGU_UAAC\n______________:||||____||_____|:_||||:|||_|:|::|:___|||||______|||:|_||||\n______________UCACC____AC_____CG_GUUGUCUU_UUAUUUU___CACUG______CCGUA_AUUG\n3'-UUU...UUUAG_____GUU___GUUAC__G________________AGA_____UUAUUU_____U____-5'\n_____________|__________________________________________________________|\n_____________58_________________________________________________________1\n |
111 -- 117 |
33 -- 39 |
-35.8821 kcal/mol |
11.4978 kcal/mol |
12.1233 kcal/mol |
92 145@LB@ | |@LB@5'-GGU...ACGCU AAAU AGAA A C CAG U GGCCC...CCA-3'@LB@ GGUGG UG GU CAACGGAA AGUGGAG GUGAC GGCGU UAAC@LB@ :|||| || |: ||||:||| |:|::|: ||||| |||:| ||||@LB@ UCACC AC CG GUUGUCUU UUAUUUU CACUG CCGUA AUUG@LB@3'-UUU...UUUAG GUU GUUAC G AGA UUAUUU U -5'@LB@ | |@LB@ 58 1@LB@@LB@@LB@Energy -12.26 kcal/mol@LB@Hybridization Energy -35.8821 kcal/mol@LB@Unfolding Energy - mRNA 11.4978 kcal/mol@LB@Unfolding Energy - sRNA 12.1233 kcal/mol@LB@@LB@Position - mRNA 93 -- 144@LB@Position - sRNA 1 -- 57@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 33 -- 39@LB@ |
59 |
0.004284 |
0.2442 |
b0094 |
ftsA |
-10.23 |
0.109208 |
176 -- 218 |
1 -- 63 |
ATP-binding cell division FtsK recruitment protein |
|
_____________175________________________________________________________________219\n_____________|__________________________________________________________________|\n5'-AAU...GCAAC__________________CA___AG___________________________UCA_____ACG___AGAAA...UCA-3'\n______________AAAAUCAG_______GCA__GGC__AACA________________ACAAUGA___AGGCG___GAC\n______________||||||||_______|||__|||__||||________________|||||:|___||||:___:||\n______________UUUUAGUC_______CGU__CCG__UUGU________________UGUUAUU___UCCGU___UUG\n3'-UUU...CAACC________ACCGUUA___UA___GG____CUUUUAUUUUAGACAC_______________AUA___-5'\n_____________|_________________________________________________________________|\n_____________64________________________________________________________________1\n |
198 -- 204 |
12 -- 18 |
-27.1283 kcal/mol |
4.74085 kcal/mol |
12.1605 kcal/mol |
175 219@LB@ | |@LB@5'-AAU...GCAAC CA AG UCA ACG AGAAA...UCA-3'@LB@ AAAAUCAG GCA GGC AACA ACAAUGA AGGCG GAC@LB@ |||||||| ||| ||| |||| |||||:| ||||: :||@LB@ UUUUAGUC CGU CCG UUGU UGUUAUU UCCGU UUG@LB@3'-UUU...CAACC ACCGUUA UA GG CUUUUAUUUUAGACAC AUA -5'@LB@ | |@LB@ 64 1@LB@@LB@@LB@Energy -10.23 kcal/mol@LB@Hybridization Energy -27.1283 kcal/mol@LB@Unfolding Energy - mRNA 4.74085 kcal/mol@LB@Unfolding Energy - sRNA 12.1605 kcal/mol@LB@@LB@Position - mRNA 176 -- 218@LB@Position - sRNA 1 -- 63@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 12 -- 18@LB@ |
60 |
0.004583 |
0.2539 |
b0674 |
asnB |
-9.07 |
0.186262 |
281 -- 298 |
39 -- 51 |
asparagine synthetase B |
|
_____________280________________299\n_____________|__________________|\n5'-ACA...CGCCU______UCAUC_______GG-3'\n______________GAUGCG_____GUGGCCC\n______________:||||:_____:||||||\n______________UUACGU_____UACCGGG\n3'-UUU...CACCG__________________UUGUC...UUG-5'\n_____________|__________________|\n_____________52_________________38\n |
292 -- 298 |
39 -- 45 |
-18.7239 kcal/mol |
4.90882 kcal/mol |
4.74571 kcal/mol |
280 299@LB@ | |@LB@5'-ACA...CGCCU UCAUC GG-3'@LB@ GAUGCG GUGGCCC@LB@ :||||: :||||||@LB@ UUACGU UACCGGG@LB@3'-UUU...CACCG UUGUC...UUG-5'@LB@ | |@LB@ 52 38@LB@@LB@@LB@Energy -9.07 kcal/mol@LB@Hybridization Energy -18.7239 kcal/mol@LB@Unfolding Energy - mRNA 4.90882 kcal/mol@LB@Unfolding Energy - sRNA 4.74571 kcal/mol@LB@@LB@Position - mRNA 281 -- 298@LB@Position - sRNA 39 -- 51@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 39 -- 45@LB@ |
61 |
0.004706 |
0.2539 |
b3713 |
chrR |
-11.93 |
0.045896 |
122 -- 163 |
8 -- 58 |
chromate reductase Class I flavoprotein |
|
_____________121____________________________________________________164\n_____________|______________________________________________________|\n5'-ACG...CCUAC___CC__A_______UUUU_____________________CU___C________UUUUU...CGA-3'\n______________CAG__GG_UGAUGCG____GCCCAAC___________UCU___AC_GUGAAGGC\n______________|||__||_::||||:____|||||||___________|||___||_:|:|||||\n______________GUC__CC_GUUACGU____CGGGUUG___________AGA___UG_UAUUUCCG\n3'-UUU...UUUUA___A___________UAC________UCUUUUAUUUU___CAC__U________UAUAUUG-5'\n_____________|______________________________________________________|\n_____________59_____________________________________________________7\n |
157 -- 163 |
8 -- 14 |
-33.8478 kcal/mol |
9.79541 kcal/mol |
12.1181 kcal/mol |
121 164@LB@ | |@LB@5'-ACG...CCUAC CC A UUUU CU C UUUUU...CGA-3'@LB@ CAG GG UGAUGCG GCCCAAC UCU AC GUGAAGGC@LB@ ||| || ::||||: ||||||| ||| || :|:|||||@LB@ GUC CC GUUACGU CGGGUUG AGA UG UAUUUCCG@LB@3'-UUU...UUUUA A UAC UCUUUUAUUUU CAC U UAUAUUG-5'@LB@ | |@LB@ 59 7@LB@@LB@@LB@Energy -11.93 kcal/mol@LB@Hybridization Energy -33.8478 kcal/mol@LB@Unfolding Energy - mRNA 9.79541 kcal/mol@LB@Unfolding Energy - sRNA 12.1181 kcal/mol@LB@@LB@Position - mRNA 122 -- 163@LB@Position - sRNA 8 -- 58@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 8 -- 14@LB@ |
62 |
0.004714 |
0.2539 |
b0973 |
hyaB |
-9.08 |
0.185506 |
169 -- 187 |
48 -- 64 |
hydrogenase 1 large subunit |
|
_____________168_________________188\n_____________|___________________|\n5'-GGU...AAACC___C_____CCA_______AGGAU...GCG-3'\n______________GAA_AUCAG___GGCAAUG\n______________|||_|||||___|||||||\n______________CUU_UAGUC___CCGUUAC\n3'-UUU...ACAAC___U_____A_________GUUAC...UUG-5'\n_____________|___________________|\n_____________65__________________47\n |
181 -- 187 |
48 -- 54 |
-17.0784 kcal/mol |
4.02672 kcal/mol |
3.97302 kcal/mol |
168 188@LB@ | |@LB@5'-GGU...AAACC C CCA AGGAU...GCG-3'@LB@ GAA AUCAG GGCAAUG@LB@ ||| ||||| |||||||@LB@ CUU UAGUC CCGUUAC@LB@3'-UUU...ACAAC U A GUUAC...UUG-5'@LB@ | |@LB@ 65 47@LB@@LB@@LB@Energy -9.08 kcal/mol@LB@Hybridization Energy -17.0784 kcal/mol@LB@Unfolding Energy - mRNA 4.02672 kcal/mol@LB@Unfolding Energy - sRNA 3.97302 kcal/mol@LB@@LB@Position - mRNA 169 -- 187@LB@Position - sRNA 48 -- 64@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 48 -- 54@LB@ |
63 |
0.004757 |
0.2539 |
b1342 |
ydaN |
-13.10 |
0.024145 |
140 -- 198 |
7 -- 70 |
putative Zn(II) transporter |
|
_____________139_______________________________________________________________199\n_____________|_________________________________________________________________|\n5'-CGU...AUGAG______CGU__________CA_____A____A___UAC_______UGCGU_______________CUGUG...AUG-3'\n______________AUGUUG___AA_CAG_GGC_____GA_GGCU_GAC___AAAAUAA______UGAUGAUGGAGGCA\n______________||||||___||_|||_|||_____:|_|||:_:||___|||||||______|||::||::|||||\n______________UACAAC___UU_GUC_CCG_____UU_CCGG_UUG___UUUUAUU______ACUGUUAUUUCCGU\n3'-UUU...AAAUA______CUU__A___A___UUACG__A____G___UC________UUAGAC______________AUAUUG-5'\n_____________|_________________________________________________________________|\n_____________71________________________________________________________________6\n |
192 -- 198 |
7 -- 13 |
-39.9747 kcal/mol |
14.7113 kcal/mol |
12.1606 kcal/mol |
139 199@LB@ | |@LB@5'-CGU...AUGAG CGU CA A A UAC UGCGU CUGUG...AUG-3'@LB@ AUGUUG AA CAG GGC GA GGCU GAC AAAAUAA UGAUGAUGGAGGCA@LB@ |||||| || ||| ||| :| |||: :|| ||||||| |||::||::|||||@LB@ UACAAC UU GUC CCG UU CCGG UUG UUUUAUU ACUGUUAUUUCCGU@LB@3'-UUU...AAAUA CUU A A UUACG A G UC UUAGAC AUAUUG-5'@LB@ | |@LB@ 71 6@LB@@LB@@LB@Energy -13.10 kcal/mol@LB@Hybridization Energy -39.9747 kcal/mol@LB@Unfolding Energy - mRNA 14.7113 kcal/mol@LB@Unfolding Energy - sRNA 12.1606 kcal/mol@LB@@LB@Position - mRNA 140 -- 198@LB@Position - sRNA 7 -- 70@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 7 -- 13@LB@ |
64 |
0.005005 |
0.2614 |
b3795 |
yifK |
-6.27 |
0.531551 |
193 -- 206 |
51 -- 64 |
putative APC family amino acid transporter |
|
_____________192____________207\n_____________|______________|\n5'-CAA...AACAC_______UA_____GAUAA...GGG-3'\n______________GAGGAUU__UGGCA\n______________||::||:__|||||\n______________CUUUUAG__ACCGU\n3'-UUU...ACAAC_______UC_____UACGU...UUG-5'\n_____________|______________|\n_____________65_____________50\n |
193 -- 199 |
58 -- 64 |
-12.618 kcal/mol |
3.46106 kcal/mol |
2.8882 kcal/mol |
192 207@LB@ | |@LB@5'-CAA...AACAC UA GAUAA...GGG-3'@LB@ GAGGAUU UGGCA@LB@ ||::||: |||||@LB@ CUUUUAG ACCGU@LB@3'-UUU...ACAAC UC UACGU...UUG-5'@LB@ | |@LB@ 65 50@LB@@LB@@LB@Energy -6.27 kcal/mol@LB@Hybridization Energy -12.618 kcal/mol@LB@Unfolding Energy - mRNA 3.46106 kcal/mol@LB@Unfolding Energy - sRNA 2.8882 kcal/mol@LB@@LB@Position - mRNA 193 -- 206@LB@Position - sRNA 51 -- 64@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 58 -- 64@LB@ |
65 |
0.005052 |
0.2614 |
b0451 |
amtB |
-9.90 |
0.127883 |
170 -- 220 |
11 -- 61 |
ammonium transporter |
|
_____________169____________________________________________________221\n_____________|______________________________________________________|\n5'-CCA...GCUGU____UC_____CACA____CA__AA_______________AUA_C_________AACUG...CGU-3'\n______________AAUC__UGGCA____GCAA__GG__CGA___AAAAUGAAG___G_GACGAUAAA\n______________||||__|||||____||||__||__|:|___|||||:||:___|_|||:|||||\n______________UUAG__ACCGU____CGUU__CC__GUU___UUUUAUUUU___C_CUGUUAUUU\n3'-UUU...ACCUU____UC_____UA______A___GG___GUC_________AGA_A_________CCGUA...UUG-5'\n_____________|______________________________________________________|\n_____________62_____________________________________________________10\n |
214 -- 220 |
11 -- 17 |
-30.4323 kcal/mol |
9.41224 kcal/mol |
11.1248 kcal/mol |
169 221@LB@ | |@LB@5'-CCA...GCUGU UC CACA CA AA AUA C AACUG...CGU-3'@LB@ AAUC UGGCA GCAA GG CGA AAAAUGAAG G GACGAUAAA@LB@ |||| ||||| |||| || |:| |||||:||: | |||:|||||@LB@ UUAG ACCGU CGUU CC GUU UUUUAUUUU C CUGUUAUUU@LB@3'-UUU...ACCUU UC UA A GG GUC AGA A CCGUA...UUG-5'@LB@ | |@LB@ 62 10@LB@@LB@@LB@Energy -9.90 kcal/mol@LB@Hybridization Energy -30.4323 kcal/mol@LB@Unfolding Energy - mRNA 9.41224 kcal/mol@LB@Unfolding Energy - sRNA 11.1248 kcal/mol@LB@@LB@Position - mRNA 170 -- 220@LB@Position - sRNA 11 -- 61@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 11 -- 17@LB@ |
66 |
0.005339 |
0.2645 |
b1476 |
fdnI |
-10.79 |
0.082799 |
156 -- 194 |
9 -- 48 |
formate dehydrogenase-N cytochrome B556 (gamma) subunit nitrate-inducible |
|
_____________155________________________________________195\n_____________|__________________________________________|\n5'-CGU...CAUCG___U________AUA_____________GA______G_____AUCAU...UUU-3'\n______________GUA_UGGCCCGA___AGGAAGUGGA__C__UGACGA__GAGG\n______________|:|_||||||:|___||:||:|::|__|__||||:|__:|||\n______________CGU_ACCGGGUU___UCUUUUAUUU__G__ACUGUU__UUCC\n3'-UUU...CGUUA___U________G____________UA_AC______AU____GUAUAUUG-5'\n_____________|__________________________________________|\n_____________49_________________________________________8\n |
161 -- 167 |
37 -- 43 |
-34.1322 kcal/mol |
12.2398 kcal/mol |
11.1008 kcal/mol |
155 195@LB@ | |@LB@5'-CGU...CAUCG U AUA GA G AUCAU...UUU-3'@LB@ GUA UGGCCCGA AGGAAGUGGA C UGACGA GAGG@LB@ |:| ||||||:| ||:||:|::| | ||||:| :|||@LB@ CGU ACCGGGUU UCUUUUAUUU G ACUGUU UUCC@LB@3'-UUU...CGUUA U G UA AC AU GUAUAUUG-5'@LB@ | |@LB@ 49 8@LB@@LB@@LB@Energy -10.79 kcal/mol@LB@Hybridization Energy -34.1322 kcal/mol@LB@Unfolding Energy - mRNA 12.2398 kcal/mol@LB@Unfolding Energy - sRNA 11.1008 kcal/mol@LB@@LB@Position - mRNA 156 -- 194@LB@Position - sRNA 9 -- 48@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 37 -- 43@LB@ |
67 |
0.005347 |
0.2645 |
b4278 |
insG |
-9.22 |
0.173962 |
151 -- 164 |
45 -- 58 |
IS4 transposase |
|
_____________150____________165\n_____________|______________|\n5'-GUU...CGAUC_______U______GAAUC...CUC-3'\n______________CAGUGGC_GUGUAA\n______________|||||||_:||:||\n______________GUCACCG_UACGUU\n3'-UUU...UUUUA_______U______ACCGG...UUG-5'\n_____________|______________|\n_____________59_____________44\n |
151 -- 157 |
52 -- 58 |
-18.8848 kcal/mol |
6.17717 kcal/mol |
3.48403 kcal/mol |
150 165@LB@ | |@LB@5'-GUU...CGAUC U GAAUC...CUC-3'@LB@ CAGUGGC GUGUAA@LB@ ||||||| :||:||@LB@ GUCACCG UACGUU@LB@3'-UUU...UUUUA U ACCGG...UUG-5'@LB@ | |@LB@ 59 44@LB@@LB@@LB@Energy -9.22 kcal/mol@LB@Hybridization Energy -18.8848 kcal/mol@LB@Unfolding Energy - mRNA 6.17717 kcal/mol@LB@Unfolding Energy - sRNA 3.48403 kcal/mol@LB@@LB@Position - mRNA 151 -- 164@LB@Position - sRNA 45 -- 58@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 52 -- 58@LB@ |
68 |
0.005347 |
0.2645 |
b3184 |
yhbE |
-8.71 |
0.217326 |
12 -- 35 |
8 -- 33 |
EamA family inner membrane putative transporter |
|
_____________11_________________________36\n_____________|__________________________|\n5'-AAG...ACGGU___________C____AGU_______CCGAA...UGG-3'\n______________AAAGUGAAAUU___GA___UAAAGGC\n______________|||:|:||||:___||___|||||||\n______________UUUUAUUUUAG___CU___AUUUCCG\n3'-UUU...UUGUC___________ACA__GUU_______UAUAUUG-5'\n_____________|__________________________|\n_____________34_________________________7\n |
29 -- 35 |
8 -- 14 |
-15.936 kcal/mol |
2.19409 kcal/mol |
5.02883 kcal/mol |
11 36@LB@ | |@LB@5'-AAG...ACGGU C AGU CCGAA...UGG-3'@LB@ AAAGUGAAAUU GA UAAAGGC@LB@ |||:|:||||: || |||||||@LB@ UUUUAUUUUAG CU AUUUCCG@LB@3'-UUU...UUGUC ACA GUU UAUAUUG-5'@LB@ | |@LB@ 34 7@LB@@LB@@LB@Energy -8.71 kcal/mol@LB@Hybridization Energy -15.936 kcal/mol@LB@Unfolding Energy - mRNA 2.19409 kcal/mol@LB@Unfolding Energy - sRNA 5.02883 kcal/mol@LB@@LB@Position - mRNA 12 -- 35@LB@Position - sRNA 8 -- 33@LB@Position Seed - mRNA 29 -- 35@LB@Position Seed - sRNA 8 -- 14@LB@ |
69 |
0.005697 |
0.2777 |
b0829 |
gsiA |
-9.42 |
0.158982 |
246 -- 287 |
28 -- 64 |
glutathione ABC transporter ATPase |
|
_____________245__________________________________________288\n_____________|____________________________________________|\n5'-CGG...CGGUU_______UGAAUAUU__CUUU_________A_____________GCUGC...GCA-3'\n______________GAAAAUC________GC____AUGCA__GG_CCAGCAGAAAAUA\n______________|||||||________||____|||||__||_|||:|||||||||\n______________CUUUUAG________CG____UACGU__CC_GGUUGUCUUUUAU\n3'-UUU...ACAAC_______UCAC______U________UA__G_____________UUUAG...UUG-5'\n_____________|____________________________________________|\n_____________65___________________________________________27\n |
246 -- 252 |
58 -- 64 |
-27.8415 kcal/mol |
7.44564 kcal/mol |
10.972 kcal/mol |
245 288@LB@ | |@LB@5'-CGG...CGGUU UGAAUAUU CUUU A GCUGC...GCA-3'@LB@ GAAAAUC GC AUGCA GG CCAGCAGAAAAUA@LB@ ||||||| || ||||| || |||:|||||||||@LB@ CUUUUAG CG UACGU CC GGUUGUCUUUUAU@LB@3'-UUU...ACAAC UCAC U UA G UUUAG...UUG-5'@LB@ | |@LB@ 65 27@LB@@LB@@LB@Energy -9.42 kcal/mol@LB@Hybridization Energy -27.8415 kcal/mol@LB@Unfolding Energy - mRNA 7.44564 kcal/mol@LB@Unfolding Energy - sRNA 10.972 kcal/mol@LB@@LB@Position - mRNA 246 -- 287@LB@Position - sRNA 28 -- 64@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 58 -- 64@LB@ |
70 |
0.005852 |
0.2791 |
b3524 |
yhjG |
-5.99 |
0.576071 |
198 -- 212 |
7 -- 18 |
putative inner membrane-anchored periplasmic AsmA family protein |
|
_____________197_____________213\n_____________|_______________|\n5'-UUG...AGCGA_______GCA_____GGCAA...GAC-3'\n______________ACGAUGA___AGGCA\n______________||:||:|___|||||\n______________UGUUAUU___UCCGU\n3'-UUU...GACAC_______________AUAUUG-5'\n_____________|_______________|\n_____________19______________6\n |
198 -- 204 |
12 -- 18 |
-10.9915 kcal/mol |
1.73561 kcal/mol |
3.26755 kcal/mol |
197 213@LB@ | |@LB@5'-UUG...AGCGA GCA GGCAA...GAC-3'@LB@ ACGAUGA AGGCA@LB@ ||:||:| |||||@LB@ UGUUAUU UCCGU@LB@3'-UUU...GACAC AUAUUG-5'@LB@ | |@LB@ 19 6@LB@@LB@@LB@Energy -5.99 kcal/mol@LB@Hybridization Energy -10.9915 kcal/mol@LB@Unfolding Energy - mRNA 1.73561 kcal/mol@LB@Unfolding Energy - sRNA 3.26755 kcal/mol@LB@@LB@Position - mRNA 198 -- 212@LB@Position - sRNA 7 -- 18@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 12 -- 18@LB@ |
71 |
0.005918 |
0.2791 |
b4348 |
hsdS |
-11.53 |
0.056880 |
66 -- 85 |
42 -- 60 |
specificity determinant for hsdM and hsdR |
|
_____________65___________________86\n_____________|____________________|\n5'-CUG...GAUGU_____C_____AA_______GCGAA...UAA-3'\n______________AUUAG_GGCAG__GCGAUGG\n______________||:||_||||:__||:||||\n______________UAGUC_CCGUU__CGUUACC\n3'-UUU...CCUUU_____A_____A________GGGUU...UUG-5'\n_____________|____________________|\n_____________61___________________41\n |
79 -- 85 |
42 -- 48 |
-21.0522 kcal/mol |
5.82821 kcal/mol |
3.69672 kcal/mol |
65 86@LB@ | |@LB@5'-CUG...GAUGU C AA GCGAA...UAA-3'@LB@ AUUAG GGCAG GCGAUGG@LB@ ||:|| ||||: ||:||||@LB@ UAGUC CCGUU CGUUACC@LB@3'-UUU...CCUUU A A GGGUU...UUG-5'@LB@ | |@LB@ 61 41@LB@@LB@@LB@Energy -11.53 kcal/mol@LB@Hybridization Energy -21.0522 kcal/mol@LB@Unfolding Energy - mRNA 5.82821 kcal/mol@LB@Unfolding Energy - sRNA 3.69672 kcal/mol@LB@@LB@Position - mRNA 66 -- 85@LB@Position - sRNA 42 -- 60@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 42 -- 48@LB@ |
72 |
0.005975 |
0.2791 |
b1062 |
pyrC |
-13.01 |
0.025478 |
15 -- 31 |
41 -- 58 |
dihydro-orotase |
|
_____________14_________________32\n_____________|__________________|\n5'-GCG...GCAGC_________A________GAAAA...CCA-3'\n______________CAG_GGCGA_GCAAUGGC\n______________|||_|||:|_||||||||\n______________GUC_CCGUU_CGUUACCG\n3'-UUU...UUUUA___A_____A________GGUUG...UUG-5'\n_____________|__________________|\n_____________59_________________40\n |
25 -- 31 |
41 -- 47 |
-24.8377 kcal/mol |
7.56192 kcal/mol |
4.26806 kcal/mol |
14 32@LB@ | |@LB@5'-GCG...GCAGC A GAAAA...CCA-3'@LB@ CAG GGCGA GCAAUGGC@LB@ ||| |||:| ||||||||@LB@ GUC CCGUU CGUUACCG@LB@3'-UUU...UUUUA A A GGUUG...UUG-5'@LB@ | |@LB@ 59 40@LB@@LB@@LB@Energy -13.01 kcal/mol@LB@Hybridization Energy -24.8377 kcal/mol@LB@Unfolding Energy - mRNA 7.56192 kcal/mol@LB@Unfolding Energy - sRNA 4.26806 kcal/mol@LB@@LB@Position - mRNA 15 -- 31@LB@Position - sRNA 41 -- 58@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 41 -- 47@LB@ |
73 |
0.006265 |
0.2822 |
b2452 |
eutH |
-10.44 |
0.098342 |
69 -- 89 |
40 -- 58 |
ethanolamine transporter |
|
_____________68____________________90\n_____________|_____________________|\n5'-UUG...UCCGC________CG_______U___GGAUG...UCC-3'\n______________CAGUGGCG__GUGCAAU_GCC\n______________|||||||:__:||||||_|||\n______________GUCACCGU__UACGUUA_CGG\n3'-UUU...UUUUA_________________C___GUUGU...UUG-5'\n_____________|_____________________|\n_____________59____________________39\n |
79 -- 85 |
44 -- 50 |
-25.8936 kcal/mol |
9.38235 kcal/mol |
6.06808 kcal/mol |
68 90@LB@ | |@LB@5'-UUG...UCCGC CG U GGAUG...UCC-3'@LB@ CAGUGGCG GUGCAAU GCC@LB@ |||||||: :|||||| |||@LB@ GUCACCGU UACGUUA CGG@LB@3'-UUU...UUUUA C GUUGU...UUG-5'@LB@ | |@LB@ 59 39@LB@@LB@@LB@Energy -10.44 kcal/mol@LB@Hybridization Energy -25.8936 kcal/mol@LB@Unfolding Energy - mRNA 9.38235 kcal/mol@LB@Unfolding Energy - sRNA 6.06808 kcal/mol@LB@@LB@Position - mRNA 69 -- 89@LB@Position - sRNA 40 -- 58@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 44 -- 50@LB@ |
74 |
0.006275 |
0.2822 |
b3298 |
rpsM |
-14.03 |
0.014091 |
187 -- 207 |
39 -- 57 |
30S ribosomal subunit protein S13 |
|
_____________186___________________208\n_____________|_____________________|\n5'-GUC...UAAAU___A_G______UA_______GUAUA...UCC-3'\n______________AGU_G_AGUGCA__GUGGCCC\n______________|||_|_|:||||__:||||||\n______________UCA_C_UUACGU__UACCGGG\n3'-UUU...UUUAG___C_G_______________UUGUC...UUG-5'\n_____________|_____________________|\n_____________58____________________38\n |
201 -- 207 |
39 -- 45 |
-23.7565 kcal/mol |
4.54468 kcal/mol |
5.17956 kcal/mol |
186 208@LB@ | |@LB@5'-GUC...UAAAU A G UA GUAUA...UCC-3'@LB@ AGU G AGUGCA GUGGCCC@LB@ ||| | |:|||| :||||||@LB@ UCA C UUACGU UACCGGG@LB@3'-UUU...UUUAG C G UUGUC...UUG-5'@LB@ | |@LB@ 58 38@LB@@LB@@LB@Energy -14.03 kcal/mol@LB@Hybridization Energy -23.7565 kcal/mol@LB@Unfolding Energy - mRNA 4.54468 kcal/mol@LB@Unfolding Energy - sRNA 5.17956 kcal/mol@LB@@LB@Position - mRNA 187 -- 207@LB@Position - sRNA 39 -- 57@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 39 -- 45@LB@ |
75 |
0.006388 |
0.2822 |
b2813 |
mltA |
-10.80 |
0.082551 |
232 -- 252 |
47 -- 66 |
membrane-bound lytic murein transglycosylase A |
|
_____________231____________________253\n_____________|______________________|\n5'-UGC...UCUUA____CAC_______________UUGCC...AAG-3'\n______________UGGG___GGUU_GUGGCAAUGC\n______________|||:___::|:_||||||||||\n______________ACCU___UUAG_CACCGUUACG\n3'-UUU...AUACA____U______U__________UUACC...UUG-5'\n_____________|______________________|\n_____________67_____________________46\n |
246 -- 252 |
47 -- 53 |
-21.5988 kcal/mol |
6.72365 kcal/mol |
4.0775 kcal/mol |
231 253@LB@ | |@LB@5'-UGC...UCUUA CAC UUGCC...AAG-3'@LB@ UGGG GGUU GUGGCAAUGC@LB@ |||: ::|: ||||||||||@LB@ ACCU UUAG CACCGUUACG@LB@3'-UUU...AUACA U U UUACC...UUG-5'@LB@ | |@LB@ 67 46@LB@@LB@@LB@Energy -10.80 kcal/mol@LB@Hybridization Energy -21.5988 kcal/mol@LB@Unfolding Energy - mRNA 6.72365 kcal/mol@LB@Unfolding Energy - sRNA 4.0775 kcal/mol@LB@@LB@Position - mRNA 232 -- 252@LB@Position - sRNA 47 -- 66@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 47 -- 53@LB@ |
76 |
0.006626 |
0.2822 |
b1658 |
purR |
-10.59 |
0.091499 |
175 -- 205 |
41 -- 63 |
transcriptional repressor hypoxanthine-binding |
|
_____________174______________________________206\n_____________|________________________________|\n5'-UUU...GAGCU____________CUGGAGUGA____G______AACAA...GCA-3'\n______________GAAGUUAG_GGU_________AAUG_AAUGGC\n______________:||:|:||_||:_________||||_||||||\n______________UUUUAGUC_CCG_________UUAC_UUACCG\n3'-UUU...CAACC________A________________G______GGUUG...UUG-5'\n_____________|________________________________|\n_____________64_______________________________40\n |
176 -- 182 |
56 -- 62 |
-19.9152 kcal/mol |
5.04846 kcal/mol |
4.27657 kcal/mol |
174 206@LB@ | |@LB@5'-UUU...GAGCU CUGGAGUGA G AACAA...GCA-3'@LB@ GAAGUUAG GGU AAUG AAUGGC@LB@ :||:|:|| ||: |||| ||||||@LB@ UUUUAGUC CCG UUAC UUACCG@LB@3'-UUU...CAACC A G GGUUG...UUG-5'@LB@ | |@LB@ 64 40@LB@@LB@@LB@Energy -10.59 kcal/mol@LB@Hybridization Energy -19.9152 kcal/mol@LB@Unfolding Energy - mRNA 5.04846 kcal/mol@LB@Unfolding Energy - sRNA 4.27657 kcal/mol@LB@@LB@Position - mRNA 175 -- 205@LB@Position - sRNA 41 -- 63@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 56 -- 62@LB@ |
77 |
0.006658 |
0.2822 |
b3347 |
fkpA |
-8.74 |
0.214444 |
80 -- 111 |
4 -- 28 |
FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) |
|
_____________79________________________________112\n_____________|_________________________________|\n5'-UGG...CAAAA________AAAAUAGA_________________CUGUA...CAG-3'\n______________AGAGUCUG________UGAUAAU_AGGGCGUGU\n______________|:|:||||________|||:|||_|:|||:|:|\n______________UUUUAGAC________ACUGUUA_UUCCGUAUA\n3'-UUU...UUUUA_______________________U_________UUG-5'\n_____________|_________________________________|\n_____________29________________________________3\n |
104 -- 110 |
5 -- 11 |
-22.6947 kcal/mol |
9.05802 kcal/mol |
4.89231 kcal/mol |
79 112@LB@ | |@LB@5'-UGG...CAAAA AAAAUAGA CUGUA...CAG-3'@LB@ AGAGUCUG UGAUAAU AGGGCGUGU@LB@ |:|:|||| |||:||| |:|||:|:|@LB@ UUUUAGAC ACUGUUA UUCCGUAUA@LB@3'-UUU...UUUUA U UUG-5'@LB@ | |@LB@ 29 3@LB@@LB@@LB@Energy -8.74 kcal/mol@LB@Hybridization Energy -22.6947 kcal/mol@LB@Unfolding Energy - mRNA 9.05802 kcal/mol@LB@Unfolding Energy - sRNA 4.89231 kcal/mol@LB@@LB@Position - mRNA 80 -- 111@LB@Position - sRNA 4 -- 28@LB@Position Seed - mRNA 104 -- 110@LB@Position Seed - sRNA 5 -- 11@LB@ |
78 |
0.006706 |
0.2822 |
b3738 |
atpB |
-10.93 |
0.077303 |
188 -- 216 |
28 -- 54 |
F0 sector of membrane-bound ATP synthase subunit a |
|
_____________187_____________________________217\n_____________|_______________________________|\n5'-CAU...CAAAG_____AAG___UC__________________UGACG...ACC-3'\n______________GGUAA___GCA__AUGGCUU__CAGAAAAUA\n______________||:||___|||__|||||::__|||||||||\n______________CCGUU___CGU__UACCGGG__GUCUUUUAU\n3'-UUU...AGUCA_____A______________UU_________UUUAG...UUG-5'\n_____________|_______________________________|\n_____________55______________________________27\n |
201 -- 207 |
39 -- 45 |
-24.7477 kcal/mol |
4.83623 kcal/mol |
8.98285 kcal/mol |
187 217@LB@ | |@LB@5'-CAU...CAAAG AAG UC UGACG...ACC-3'@LB@ GGUAA GCA AUGGCUU CAGAAAAUA@LB@ ||:|| ||| |||||:: |||||||||@LB@ CCGUU CGU UACCGGG GUCUUUUAU@LB@3'-UUU...AGUCA A UU UUUAG...UUG-5'@LB@ | |@LB@ 55 27@LB@@LB@@LB@Energy -10.93 kcal/mol@LB@Hybridization Energy -24.7477 kcal/mol@LB@Unfolding Energy - mRNA 4.83623 kcal/mol@LB@Unfolding Energy - sRNA 8.98285 kcal/mol@LB@@LB@Position - mRNA 188 -- 216@LB@Position - sRNA 28 -- 54@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 39 -- 45@LB@ |
79 |
0.006804 |
0.2822 |
b2947 |
gshB |
-11.48 |
0.058268 |
213 -- 229 |
39 -- 54 |
glutathione synthetase |
|
_____________212_______________230\n_____________|_________________|\n5'-UGC...AGCUC____UC_______A___CAUCG...ACG-3'\n______________GGCA__GUGAUGG_CCC\n______________||||__|::||||_|||\n______________CCGU__CGUUACC_GGG\n3'-UUU...AGUCA____UA___________UUGUC...UUG-5'\n_____________|_________________|\n_____________55________________38\n |
219 -- 225 |
42 -- 48 |
-21.2333 kcal/mol |
4.99211 kcal/mol |
4.76022 kcal/mol |
212 230@LB@ | |@LB@5'-UGC...AGCUC UC A CAUCG...ACG-3'@LB@ GGCA GUGAUGG CCC@LB@ |||| |::|||| |||@LB@ CCGU CGUUACC GGG@LB@3'-UUU...AGUCA UA UUGUC...UUG-5'@LB@ | |@LB@ 55 38@LB@@LB@@LB@Energy -11.48 kcal/mol@LB@Hybridization Energy -21.2333 kcal/mol@LB@Unfolding Energy - mRNA 4.99211 kcal/mol@LB@Unfolding Energy - sRNA 4.76022 kcal/mol@LB@@LB@Position - mRNA 213 -- 229@LB@Position - sRNA 39 -- 54@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 42 -- 48@LB@ |
80 |
0.006956 |
0.2822 |
b1914 |
uvrY |
-9.02 |
0.189987 |
260 -- 281 |
5 -- 24 |
response regulator in two-component regulatory system with BarA |
|
_____________259____________________282\n_____________|______________________|\n5'-UUC...CGCAU____GAA____UA_________AAAGU...CAU-3'\n______________UCUG___GAUA__AAGGGUAUA\n______________||||___||:|__||:||:|||\n______________AGAC___CUGU__UUUCCGUAU\n3'-UUU...AUUUU____A______UA_________AUUG-5'\n_____________|______________________|\n_____________25_____________________4\n |
275 -- 281 |
5 -- 11 |
-15.9126 kcal/mol |
2.27135 kcal/mol |
4.61703 kcal/mol |
259 282@LB@ | |@LB@5'-UUC...CGCAU GAA UA AAAGU...CAU-3'@LB@ UCUG GAUA AAGGGUAUA@LB@ |||| ||:| ||:||:|||@LB@ AGAC CUGU UUUCCGUAU@LB@3'-UUU...AUUUU A UA AUUG-5'@LB@ | |@LB@ 25 4@LB@@LB@@LB@Energy -9.02 kcal/mol@LB@Hybridization Energy -15.9126 kcal/mol@LB@Unfolding Energy - mRNA 2.27135 kcal/mol@LB@Unfolding Energy - sRNA 4.61703 kcal/mol@LB@@LB@Position - mRNA 260 -- 281@LB@Position - sRNA 5 -- 24@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 5 -- 11@LB@ |
81 |
0.006985 |
0.2822 |
b0333 |
prpC |
-14.20 |
0.012743 |
251 -- 274 |
6 -- 28 |
2-methylcitrate synthase |
|
_____________250______________________275\n_____________|________________________|\n5'-ACU...CCGAA_____________CUUUCU_____UCCGG...GCA-3'\n______________AAAAUCUGUGGCA______GGCGU\n______________||||||||||:||______|||:|\n______________UUUUAGACACUGU______CCGUA\n3'-UUU...UUUUA_____________UAUUU______UAUUG-5'\n_____________|________________________|\n_____________29_______________________5\n |
257 -- 263 |
16 -- 22 |
-23.1913 kcal/mol |
4.0983 kcal/mol |
4.89176 kcal/mol |
250 275@LB@ | |@LB@5'-ACU...CCGAA CUUUCU UCCGG...GCA-3'@LB@ AAAAUCUGUGGCA GGCGU@LB@ ||||||||||:|| |||:|@LB@ UUUUAGACACUGU CCGUA@LB@3'-UUU...UUUUA UAUUU UAUUG-5'@LB@ | |@LB@ 29 5@LB@@LB@@LB@Energy -14.20 kcal/mol@LB@Hybridization Energy -23.1913 kcal/mol@LB@Unfolding Energy - mRNA 4.0983 kcal/mol@LB@Unfolding Energy - sRNA 4.89176 kcal/mol@LB@@LB@Position - mRNA 251 -- 274@LB@Position - sRNA 6 -- 28@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 16 -- 22@LB@ |
82 |
0.006986 |
0.2822 |
b3128 |
garD |
-14.80 |
0.008847 |
185 -- 224 |
15 -- 66 |
D-galactarate dehydrogenase |
|
_____________184__________________________________________________225\n_____________|____________________________________________________|\n5'-AUA...CUGGC________AUU_____________________UC__________A_______GAAAC...UGA-3'\n______________UGGAGAAU_____GCA___CAAUGGCC_AACA______GAAAUC___GACAA\n______________||||:|||_____|||___||||||||_||||______:|||||___|||||\n______________ACCUUUUA_____CGU___GUUACCGG_UUGU______UUUUAG___CUGUU\n3'-UUU...AUACA________GUCAC___UAC________G____CUUUUA______ACA_____AUUUC...UUG-5'\n_____________|____________________________________________________|\n_____________67___________________________________________________14\n |
200 -- 206 |
40 -- 46 |
-31.4715 kcal/mol |
5.54782 kcal/mol |
11.1209 kcal/mol |
184 225@LB@ | |@LB@5'-AUA...CUGGC AUU UC A GAAAC...UGA-3'@LB@ UGGAGAAU GCA CAAUGGCC AACA GAAAUC GACAA@LB@ ||||:||| ||| |||||||| |||| :||||| |||||@LB@ ACCUUUUA CGU GUUACCGG UUGU UUUUAG CUGUU@LB@3'-UUU...AUACA GUCAC UAC G CUUUUA ACA AUUUC...UUG-5'@LB@ | |@LB@ 67 14@LB@@LB@@LB@Energy -14.80 kcal/mol@LB@Hybridization Energy -31.4715 kcal/mol@LB@Unfolding Energy - mRNA 5.54782 kcal/mol@LB@Unfolding Energy - sRNA 11.1209 kcal/mol@LB@@LB@Position - mRNA 185 -- 224@LB@Position - sRNA 15 -- 66@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 40 -- 46@LB@ |
83 |
0.007014 |
0.2822 |
b0815 |
opgE |
-11.11 |
0.070482 |
164 -- 204 |
2 -- 58 |
OPG biosynthetic transmembrane phosphoethanolamine transferase |
|
_____________163________________________________________________________205\n_____________|__________________________________________________________|\n5'-UUU...GACGC_____________C__________________________U_______U_________AUUUA...GCU-3'\n______________CAG_GGUAA_GCA_AUGGC_______________GUUUGU_ACGAUAG_GGCAUAUGA\n______________|||_||:||_|||_|||||_______________:|:|||_||:|||:_|||||||:|\n______________GUC_CCGUU_CGU_UACCG_______________UAGACA_UGUUAUU_CCGUAUAUU\n3'-UUU...UUUUA___A_____A_________GGUUGUCUUUUAUUU______C_______U_________G-5'\n_____________|__________________________________________________________|\n_____________59_________________________________________________________1\n |
197 -- 203 |
3 -- 9 |
-40.5172 kcal/mol |
17.2586 kcal/mol |
12.1475 kcal/mol |
163 205@LB@ | |@LB@5'-UUU...GACGC C U U AUUUA...GCU-3'@LB@ CAG GGUAA GCA AUGGC GUUUGU ACGAUAG GGCAUAUGA@LB@ ||| ||:|| ||| ||||| :|:||| ||:|||: |||||||:|@LB@ GUC CCGUU CGU UACCG UAGACA UGUUAUU CCGUAUAUU@LB@3'-UUU...UUUUA A A GGUUGUCUUUUAUUU C U G-5'@LB@ | |@LB@ 59 1@LB@@LB@@LB@Energy -11.11 kcal/mol@LB@Hybridization Energy -40.5172 kcal/mol@LB@Unfolding Energy - mRNA 17.2586 kcal/mol@LB@Unfolding Energy - sRNA 12.1475 kcal/mol@LB@@LB@Position - mRNA 164 -- 204@LB@Position - sRNA 2 -- 58@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 3 -- 9@LB@ |
84 |
0.00705 |
0.2822 |
b2341 |
fadJ |
-9.52 |
0.152421 |
171 -- 187 |
39 -- 55 |
enoyl-CoA hydratase/epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase |
|
_____________170_______________188\n_____________|_________________|\n5'-CAU...GGGCU_____CG__________UGGAG...CGG-3'\n______________UGGCG__GCAAUGGUUC\n______________||||:__|||||||::|\n______________ACCGU__CGUUACCGGG\n3'-UUU...UAGUC_____UA__________UUGUC...UUG-5'\n_____________|_________________|\n_____________56________________38\n |
181 -- 187 |
39 -- 45 |
-22.4983 kcal/mol |
8.21876 kcal/mol |
4.76312 kcal/mol |
170 188@LB@ | |@LB@5'-CAU...GGGCU CG UGGAG...CGG-3'@LB@ UGGCG GCAAUGGUUC@LB@ ||||: |||||||::|@LB@ ACCGU CGUUACCGGG@LB@3'-UUU...UAGUC UA UUGUC...UUG-5'@LB@ | |@LB@ 56 38@LB@@LB@@LB@Energy -9.52 kcal/mol@LB@Hybridization Energy -22.4983 kcal/mol@LB@Unfolding Energy - mRNA 8.21876 kcal/mol@LB@Unfolding Energy - sRNA 4.76312 kcal/mol@LB@@LB@Position - mRNA 171 -- 187@LB@Position - sRNA 39 -- 55@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 39 -- 45@LB@ |
85 |
0.007532 |
0.2889 |
b4252 |
tabA |
-7.64 |
0.334848 |
14 -- 22 |
41 -- 49 |
biofilm modulator regulated by toxins; DUF386 family protein cupin superfamily protein |
|
_____________13________23\n_____________|_________|\n5'-UCU...ACAGC_________GGGGG...CAA-3'\n______________UGCAAUGGC\n______________|||||||||\n______________ACGUUACCG\n3'-UUU...CCGUU_________GGUUG...UUG-5'\n_____________|_________|\n_____________50________40\n |
16 -- 22 |
41 -- 47 |
-14.0816 kcal/mol |
4.16801 kcal/mol |
2.27678 kcal/mol |
13 23@LB@ | |@LB@5'-UCU...ACAGC GGGGG...CAA-3'@LB@ UGCAAUGGC@LB@ |||||||||@LB@ ACGUUACCG@LB@3'-UUU...CCGUU GGUUG...UUG-5'@LB@ | |@LB@ 50 40@LB@@LB@@LB@Energy -7.64 kcal/mol@LB@Hybridization Energy -14.0816 kcal/mol@LB@Unfolding Energy - mRNA 4.16801 kcal/mol@LB@Unfolding Energy - sRNA 2.27678 kcal/mol@LB@@LB@Position - mRNA 14 -- 22@LB@Position - sRNA 41 -- 49@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 41 -- 47@LB@ |
86 |
0.007534 |
0.2889 |
b0189 |
rof |
-5.95 |
0.582576 |
103 -- 121 |
40 -- 57 |
modulator of Rho-dependent transcription termination |
|
_____________102_________________122\n_____________|___________________|\n5'-AGG...UUGAA____CUG____A_______GCCGA...GCG-3'\n______________AGUG___AAUG_AAUGGCU\n______________||||___||||_||||||:\n______________UCAC___UUAC_UUACCGG\n3'-UUU...UUUAG____CG_____G_______GUUGU...UUG-5'\n_____________|___________________|\n_____________58__________________39\n |
115 -- 121 |
40 -- 46 |
-14.9441 kcal/mol |
3.94739 kcal/mol |
5.04912 kcal/mol |
102 122@LB@ | |@LB@5'-AGG...UUGAA CUG A GCCGA...GCG-3'@LB@ AGUG AAUG AAUGGCU@LB@ |||| |||| ||||||:@LB@ UCAC UUAC UUACCGG@LB@3'-UUU...UUUAG CG G GUUGU...UUG-5'@LB@ | |@LB@ 58 39@LB@@LB@@LB@Energy -5.95 kcal/mol@LB@Hybridization Energy -14.9441 kcal/mol@LB@Unfolding Energy - mRNA 3.94739 kcal/mol@LB@Unfolding Energy - sRNA 5.04912 kcal/mol@LB@@LB@Position - mRNA 103 -- 121@LB@Position - sRNA 40 -- 57@LB@Position Seed - mRNA 115 -- 121@LB@Position Seed - sRNA 40 -- 46@LB@ |
87 |
0.007653 |
0.2889 |
b1881 |
cheZ |
-13.56 |
0.018568 |
164 -- 190 |
2 -- 28 |
chemotaxis regulator protein phosphatase for CheY |
|
_____________163_________________________191\n_____________|___________________________|\n5'-AUU...UCAAC_______U___G__ACU__________GGAUG...GGG-3'\n______________AAAAUCU_UGA_AA___GGGCAUGUGA\n______________|||||||_|||_||___:|||||:|:|\n______________UUUUAGA_ACU_UU___UCCGUAUAUU\n3'-UUU...UUUUA_______C___G__AUU__________G-5'\n_____________|___________________________|\n_____________29__________________________1\n |
183 -- 189 |
3 -- 9 |
-22.696 kcal/mol |
4.24203 kcal/mol |
4.89261 kcal/mol |
163 191@LB@ | |@LB@5'-AUU...UCAAC U G ACU GGAUG...GGG-3'@LB@ AAAAUCU UGA AA GGGCAUGUGA@LB@ ||||||| ||| || :|||||:|:|@LB@ UUUUAGA ACU UU UCCGUAUAUU@LB@3'-UUU...UUUUA C G AUU G-5'@LB@ | |@LB@ 29 1@LB@@LB@@LB@Energy -13.56 kcal/mol@LB@Hybridization Energy -22.696 kcal/mol@LB@Unfolding Energy - mRNA 4.24203 kcal/mol@LB@Unfolding Energy - sRNA 4.89261 kcal/mol@LB@@LB@Position - mRNA 164 -- 190@LB@Position - sRNA 2 -- 28@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 3 -- 9@LB@ |
88 |
0.007723 |
0.2889 |
b4403 |
yjtD |
-13.82 |
0.016006 |
193 -- 211 |
1 -- 21 |
putative methyltransferase |
|
_____________192___________________212\n_____________|_____________________|\n5'-AUU...GAAGA_________U___________GAUUA...UUG-3'\n______________GUGGCAAUA___GCGUAUAAC\n______________|||:|||||___||:||||||\n______________CACUGUUAU___CGUAUAUUG\n3'-UUU...UUAGA_________UUC_________-5'\n_____________|____________________|\n_____________22___________________1\n |
205 -- 211 |
1 -- 7 |
-21.8234 kcal/mol |
3.59402 kcal/mol |
4.41334 kcal/mol |
192 212@LB@ | |@LB@5'-AUU...GAAGA U GAUUA...UUG-3'@LB@ GUGGCAAUA GCGUAUAAC@LB@ |||:||||| ||:||||||@LB@ CACUGUUAU CGUAUAUUG@LB@3'-UUU...UUAGA UUC -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -13.82 kcal/mol@LB@Hybridization Energy -21.8234 kcal/mol@LB@Unfolding Energy - mRNA 3.59402 kcal/mol@LB@Unfolding Energy - sRNA 4.41334 kcal/mol@LB@@LB@Position - mRNA 193 -- 211@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 1 -- 7@LB@ |
89 |
0.007733 |
0.2889 |
b3426 |
glpD |
-8.48 |
0.239884 |
186 -- 234 |
7 -- 64 |
sn-glycerol-3-phosphate dehydrogenase aerobic FAD/NAD(P)-binding |
|
_____________185__________________________________________________________235\n_____________|____________________________________________________________|\n5'-AAC...CGAAA_U____G________________AAA________UCU_______________________GCAUC...AGG-3'\n______________G_GAAU_AG_GGCA__GC_AUGG___CCAA_AGA______GA_UUGUGAUAG__GGGGCG\n______________|_:|||_||_||||__||_||||___||||_|||______:|_:|||||:|:__::|||:\n______________C_UUUA_UC_CCGU__CG_UACC___GGUU_UCU______UU_GACACUGUU__UUCCGU\n3'-UUU...ACAAC_U____G__A____UA__U____G______G___UUUAUU__A_________AU______AUAUUG-5'\n_____________|____________________________________________________________|\n_____________65___________________________________________________________6\n |
222 -- 228 |
15 -- 21 |
-34.508 kcal/mol |
13.8761 kcal/mol |
12.1536 kcal/mol |
185 235@LB@ | |@LB@5'-AAC...CGAAA U G AAA UCU GCAUC...AGG-3'@LB@ G GAAU AG GGCA GC AUGG CCAA AGA GA UUGUGAUAG GGGGCG@LB@ | :||| || |||| || |||| |||| ||| :| :|||||:|: ::|||:@LB@ C UUUA UC CCGU CG UACC GGUU UCU UU GACACUGUU UUCCGU@LB@3'-UUU...ACAAC U G A UA U G G UUUAUU A AU AUAUUG-5'@LB@ | |@LB@ 65 6@LB@@LB@@LB@Energy -8.48 kcal/mol@LB@Hybridization Energy -34.508 kcal/mol@LB@Unfolding Energy - mRNA 13.8761 kcal/mol@LB@Unfolding Energy - sRNA 12.1536 kcal/mol@LB@@LB@Position - mRNA 186 -- 234@LB@Position - sRNA 7 -- 64@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 15 -- 21@LB@ |
90 |
0.007755 |
0.2889 |
b1852 |
zwf |
-12.23 |
0.039232 |
191 -- 223 |
38 -- 65 |
glucose-6-phosphate 1-dehydrogenase |
|
_____________190_______________________________224\n_____________|_________________________________|\n5'-UCA...CUUAA_______G_CA_______AAC____ACA_____GGCCU...UGG-3'\n______________GGAGAAU_A__UGGCGGU___GCAA___GCCCA\n______________|||:|||_|__||||::|___||||___|||||\n______________CCUUUUA_U__ACCGUUA___CGUU___CGGGU\n3'-UUU...UACAA_______G_C_______________AC______UGUCU...UUG-5'\n_____________|_________________________________|\n_____________66________________________________37\n |
202 -- 208 |
49 -- 55 |
-27.1425 kcal/mol |
8.24293 kcal/mol |
6.67322 kcal/mol |
190 224@LB@ | |@LB@5'-UCA...CUUAA G CA AAC ACA GGCCU...UGG-3'@LB@ GGAGAAU A UGGCGGU GCAA GCCCA@LB@ |||:||| | ||||::| |||| |||||@LB@ CCUUUUA U ACCGUUA CGUU CGGGU@LB@3'-UUU...UACAA G C AC UGUCU...UUG-5'@LB@ | |@LB@ 66 37@LB@@LB@@LB@Energy -12.23 kcal/mol@LB@Hybridization Energy -27.1425 kcal/mol@LB@Unfolding Energy - mRNA 8.24293 kcal/mol@LB@Unfolding Energy - sRNA 6.67322 kcal/mol@LB@@LB@Position - mRNA 191 -- 223@LB@Position - sRNA 38 -- 65@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 49 -- 55@LB@ |
91 |
0.007817 |
0.2889 |
b3380 |
yhfW |
-10.82 |
0.081759 |
179 -- 205 |
41 -- 67 |
phosphopentomutase-related metalloenzyme superfamily protein |
|
_____________178_________________________206\n_____________|___________________________|\n5'-CUC...CAGUC_______C__UC___G__C________GCGAU...GUG-3'\n______________UUGGAAA_UC__UGG_GG_GUAAUGGC\n______________|||||||_||__|||_::_|:||||||\n______________AACCUUU_AG__ACC_UU_CGUUACCG\n3'-UUU...UAUAC_______U__UC___G__A________GGUUG...UUG-5'\n_____________|___________________________|\n_____________68__________________________40\n |
199 -- 205 |
41 -- 47 |
-26.7792 kcal/mol |
10.1319 kcal/mol |
5.83043 kcal/mol |
178 206@LB@ | |@LB@5'-CUC...CAGUC C UC G C GCGAU...GUG-3'@LB@ UUGGAAA UC UGG GG GUAAUGGC@LB@ ||||||| || ||| :: |:||||||@LB@ AACCUUU AG ACC UU CGUUACCG@LB@3'-UUU...UAUAC U UC G A GGUUG...UUG-5'@LB@ | |@LB@ 68 40@LB@@LB@@LB@Energy -10.82 kcal/mol@LB@Hybridization Energy -26.7792 kcal/mol@LB@Unfolding Energy - mRNA 10.1319 kcal/mol@LB@Unfolding Energy - sRNA 5.83043 kcal/mol@LB@@LB@Position - mRNA 179 -- 205@LB@Position - sRNA 41 -- 67@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 41 -- 47@LB@ |
92 |
0.007983 |
0.2918 |
b2513 |
yfgM |
-8.87 |
0.203113 |
70 -- 109 |
9 -- 65 |
ancillary SecYEG translocon subunit; putative anti-RcsB factor |
|
_____________69___________________________________________________________110\n_____________|____________________________________________________________|\n5'-GGC...UGCUG__U_____UGA_____________C___A_______________________________AUUUG...UUG-3'\n______________GG_GAGUC___AGUGGC____UAA_GGC_CAGCAG________________UAGUGAAGG\n______________||_:|:||___||||||____:||_|||_||:|||________________:|:|:||||\n______________CC_UUUAG___UCACCG____GUU_CCG_GUUGUC________________GUUAUUUCC\n3'-UUU...UACAA__U______________UUAC___A___G______UUUUAUUUUAGACACU_________GUAUAUUG-5'\n_____________|____________________________________________________________|\n_____________66___________________________________________________________8\n |
103 -- 109 |
9 -- 15 |
-31.9345 kcal/mol |
11.9273 kcal/mol |
11.1365 kcal/mol |
69 110@LB@ | |@LB@5'-GGC...UGCUG U UGA C A AUUUG...UUG-3'@LB@ GG GAGUC AGUGGC UAA GGC CAGCAG UAGUGAAGG@LB@ || :|:|| |||||| :|| ||| ||:||| :|:|:||||@LB@ CC UUUAG UCACCG GUU CCG GUUGUC GUUAUUUCC@LB@3'-UUU...UACAA U UUAC A G UUUUAUUUUAGACACU GUAUAUUG-5'@LB@ | |@LB@ 66 8@LB@@LB@@LB@Energy -8.87 kcal/mol@LB@Hybridization Energy -31.9345 kcal/mol@LB@Unfolding Energy - mRNA 11.9273 kcal/mol@LB@Unfolding Energy - sRNA 11.1365 kcal/mol@LB@@LB@Position - mRNA 70 -- 109@LB@Position - sRNA 9 -- 65@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 9 -- 15@LB@ |
93 |
0.008233 |
0.2977 |
b2669 |
stpA |
-8.51 |
0.236304 |
244 -- 255 |
39 -- 50 |
DNA binding protein nucleoid-associated |
|
_____________243__________256\n_____________|____________|\n5'-UUC...CCUCC____________GCGAA...UCA-3'\n______________GUGCGAUGGCUC\n______________:|||:|||||:|\n______________UACGUUACCGGG\n3'-UUU...ACCGU____________UUGUC...UUG-5'\n_____________|____________|\n_____________51___________38\n |
249 -- 255 |
39 -- 45 |
-19.1222 kcal/mol |
5.86982 kcal/mol |
4.73799 kcal/mol |
243 256@LB@ | |@LB@5'-UUC...CCUCC GCGAA...UCA-3'@LB@ GUGCGAUGGCUC@LB@ :|||:|||||:|@LB@ UACGUUACCGGG@LB@3'-UUU...ACCGU UUGUC...UUG-5'@LB@ | |@LB@ 51 38@LB@@LB@@LB@Energy -8.51 kcal/mol@LB@Hybridization Energy -19.1222 kcal/mol@LB@Unfolding Energy - mRNA 5.86982 kcal/mol@LB@Unfolding Energy - sRNA 4.73799 kcal/mol@LB@@LB@Position - mRNA 244 -- 255@LB@Position - sRNA 39 -- 50@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 39 -- 45@LB@ |
94 |
0.008385 |
0.3 |
b1804 |
rnd |
-8.17 |
0.271836 |
224 -- 238 |
41 -- 54 |
ribonuclease D |
|
_____________223_____________239\n_____________|_______________|\n5'-GUC...ACCAC__A_______C____UUCUU...GUA-3'\n______________GG_CGAUGCG_UGGC\n______________||_|:||||:_||||\n______________CC_GUUACGU_ACCG\n3'-UUU...AGUCA__________U____GGUUG...UUG-5'\n_____________|_______________|\n_____________55______________40\n |
227 -- 233 |
46 -- 52 |
-18.0571 kcal/mol |
5.99437 kcal/mol |
3.89026 kcal/mol |
223 239@LB@ | |@LB@5'-GUC...ACCAC A C UUCUU...GUA-3'@LB@ GG CGAUGCG UGGC@LB@ || |:||||: ||||@LB@ CC GUUACGU ACCG@LB@3'-UUU...AGUCA U GGUUG...UUG-5'@LB@ | |@LB@ 55 40@LB@@LB@@LB@Energy -8.17 kcal/mol@LB@Hybridization Energy -18.0571 kcal/mol@LB@Unfolding Energy - mRNA 5.99437 kcal/mol@LB@Unfolding Energy - sRNA 3.89026 kcal/mol@LB@@LB@Position - mRNA 224 -- 238@LB@Position - sRNA 41 -- 54@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 46 -- 52@LB@ |
95 |
0.008588 |
0.304 |
b4551 |
yheV |
-11.20 |
0.067476 |
257 -- 273 |
47 -- 65 |
DUF2387 family putative metal-binding protein |
|
_____________256_________________274\n_____________|___________________|\n5'-AUC...GCGCA___U_____A_________GGCGC...UUG-3'\n______________GGA___UCA_UGGCGAUGU\n______________|||___|||_||||:|||:\n______________CCU___AGU_ACCGUUACG\n3'-UUU...UACAA___UUU___C_________UUACC...UUG-5'\n_____________|___________________|\n_____________66__________________46\n |
267 -- 273 |
47 -- 53 |
-19.3348 kcal/mol |
4.06987 kcal/mol |
4.06844 kcal/mol |
256 274@LB@ | |@LB@5'-AUC...GCGCA U A GGCGC...UUG-3'@LB@ GGA UCA UGGCGAUGU@LB@ ||| ||| ||||:|||:@LB@ CCU AGU ACCGUUACG@LB@3'-UUU...UACAA UUU C UUACC...UUG-5'@LB@ | |@LB@ 66 46@LB@@LB@@LB@Energy -11.20 kcal/mol@LB@Hybridization Energy -19.3348 kcal/mol@LB@Unfolding Energy - mRNA 4.06987 kcal/mol@LB@Unfolding Energy - sRNA 4.06844 kcal/mol@LB@@LB@Position - mRNA 257 -- 273@LB@Position - sRNA 47 -- 65@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 47 -- 53@LB@ |
96 |
0.009004 |
0.3118 |
b3981 |
secE |
-8.82 |
0.207803 |
253 -- 270 |
42 -- 57 |
preprotein translocase membrane subunit |
|
_____________252________________271\n_____________|__________________|\n5'-UAA...GAUGA_____GUCGU________CAUUG...ACU-3'\n______________AGUGG_____UGUGGUGG\n______________|||||_____||:::|||\n______________UCACC_____ACGUUACC\n3'-UUU...UUUAG_____GUU__________GGGUU...UUG-5'\n_____________|__________________|\n_____________58_________________41\n |
264 -- 270 |
42 -- 48 |
-15.0916 kcal/mol |
2.64473 kcal/mol |
3.62906 kcal/mol |
252 271@LB@ | |@LB@5'-UAA...GAUGA GUCGU CAUUG...ACU-3'@LB@ AGUGG UGUGGUGG@LB@ ||||| ||:::|||@LB@ UCACC ACGUUACC@LB@3'-UUU...UUUAG GUU GGGUU...UUG-5'@LB@ | |@LB@ 58 41@LB@@LB@@LB@Energy -8.82 kcal/mol@LB@Hybridization Energy -15.0916 kcal/mol@LB@Unfolding Energy - mRNA 2.64473 kcal/mol@LB@Unfolding Energy - sRNA 3.62906 kcal/mol@LB@@LB@Position - mRNA 253 -- 270@LB@Position - sRNA 42 -- 57@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 42 -- 48@LB@ |
97 |
0.009098 |
0.3118 |
b3221 |
yhcH |
-21.73 |
0.000051 |
38 -- 71 |
30 -- 66 |
DUF386 family protein cupin superfamily |
|
_____________37____________________________________72\n_____________|_____________________________________|\n5'-AUC...GUGCG___U_________________U_______________GUAUC...AAG-3'\n______________UGG__GGUCGGUGGCA__GCG_UGGUCUGGCAGAAGG\n______________|||__::||:||||||__||:_|||:|:::|||||::\n______________ACC__UUAGUCACCGU__CGU_ACCGGGUUGUCUUUU\n3'-UUU...AUACA___UU___________UA___U_______________AUUUU...UUG-5'\n_____________|_____________________________________|\n_____________67____________________________________29\n |
57 -- 63 |
38 -- 44 |
-43.4799 kcal/mol |
10.7586 kcal/mol |
10.9916 kcal/mol |
37 72@LB@ | |@LB@5'-AUC...GUGCG U U GUAUC...AAG-3'@LB@ UGG GGUCGGUGGCA GCG UGGUCUGGCAGAAGG@LB@ ||| ::||:|||||| ||: |||:|:::|||||::@LB@ ACC UUAGUCACCGU CGU ACCGGGUUGUCUUUU@LB@3'-UUU...AUACA UU UA U AUUUU...UUG-5'@LB@ | |@LB@ 67 29@LB@@LB@@LB@Energy -21.73 kcal/mol@LB@Hybridization Energy -43.4799 kcal/mol@LB@Unfolding Energy - mRNA 10.7586 kcal/mol@LB@Unfolding Energy - sRNA 10.9916 kcal/mol@LB@@LB@Position - mRNA 38 -- 71@LB@Position - sRNA 30 -- 66@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 38 -- 44@LB@ |
98 |
0.009218 |
0.3118 |
b3391 |
hofQ |
-10.83 |
0.081241 |
8 -- 57 |
7 -- 65 |
DNA catabolic putative fimbrial transporter |
|
_____________7_____________________________________________________________58\n_____________|_____________________________________________________________|\n____5'-CUAUCAG____UGG_________G____GC__A___U___UGU_________________________AAAGA...UAG-3'\n______________GGGA___UAG_GGCGA_GCGA__GC_UCA_CGG___AAUAAAA_____GAC_____GGGCA\n______________||:|___:||_|||:|_||:|__||_:||_|:|___|||||||_____|||_____:||||\n______________CCUU___GUC_CCGUU_CGUU__CG_GGU_GUC___UUAUUUU_____CUG_____UCCGU\n3'-UUU...UACAA____UUA___A_____A____AC______U___UU________AGACA___UUAUU_____AUAUUG-5'\n_____________|_____________________________________________________________|\n_____________66____________________________________________________________6\n |
43 -- 49 |
25 -- 31 |
-34.6984 kcal/mol |
11.715 kcal/mol |
12.1538 kcal/mol |
7 58@LB@ | |@LB@ 5'-CUAUCAG UGG G GC A U UGU AAAGA...UAG-3'@LB@ GGGA UAG GGCGA GCGA GC UCA CGG AAUAAAA GAC GGGCA@LB@ ||:| :|| |||:| ||:| || :|| |:| ||||||| ||| :||||@LB@ CCUU GUC CCGUU CGUU CG GGU GUC UUAUUUU CUG UCCGU@LB@3'-UUU...UACAA UUA A A AC U UU AGACA UUAUU AUAUUG-5'@LB@ | |@LB@ 66 6@LB@@LB@@LB@Energy -10.83 kcal/mol@LB@Hybridization Energy -34.6984 kcal/mol@LB@Unfolding Energy - mRNA 11.715 kcal/mol@LB@Unfolding Energy - sRNA 12.1538 kcal/mol@LB@@LB@Position - mRNA 8 -- 57@LB@Position - sRNA 7 -- 65@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 25 -- 31@LB@ |
99 |
0.009334 |
0.3118 |
b0675 |
umpH |
-9.49 |
0.153954 |
143 -- 172 |
39 -- 66 |
UMP phosphatase |
|
_____________142____________________________173\n_____________|______________________________|\n5'-AGC...UUUGC__________A__U__UUUUA_______G_UUAUU...AUA-3'\n______________UGGAAAAUUA_UG_GC_____UAGUGGC_C\n______________||||||||:|_||_||_____:|:||||_|\n______________ACCUUUUAGU_AC_CG_____GUUACCG_G\n3'-UUU...AUACA__________C_____UUAC________G_UUGUC...UUG-5'\n_____________|______________________________|\n_____________67_____________________________38\n |
145 -- 151 |
58 -- 64 |
-25.171 kcal/mol |
9.00393 kcal/mol |
6.67256 kcal/mol |
142 173@LB@ | |@LB@5'-AGC...UUUGC A U UUUUA G UUAUU...AUA-3'@LB@ UGGAAAAUUA UG GC UAGUGGC C@LB@ ||||||||:| || || :|:|||| |@LB@ ACCUUUUAGU AC CG GUUACCG G@LB@3'-UUU...AUACA C UUAC G UUGUC...UUG-5'@LB@ | |@LB@ 67 38@LB@@LB@@LB@Energy -9.49 kcal/mol@LB@Hybridization Energy -25.171 kcal/mol@LB@Unfolding Energy - mRNA 9.00393 kcal/mol@LB@Unfolding Energy - sRNA 6.67256 kcal/mol@LB@@LB@Position - mRNA 143 -- 172@LB@Position - sRNA 39 -- 66@LB@Position Seed - mRNA 145 -- 151@LB@Position Seed - sRNA 58 -- 64@LB@ |
100 |
0.009417 |
0.3118 |
b4363 |
yjjB |
-11.70 |
0.052026 |
267 -- 280 |
41 -- 54 |
DUF3815 family inner membrane protein |
|
_____________266____________281\n_____________|______________|\n5'-ACU...CGGUC___UU_________GUUCA...GGG-3'\n______________GGC__UGCGAUGGU\n______________|||__|||:||||:\n______________CCG__ACGUUACCG\n3'-UUU...AGUCA___UU_________GGUUG...UUG-5'\n_____________|______________|\n_____________55_____________40\n |
274 -- 280 |
41 -- 47 |
-20.909 kcal/mol |
5.32115 kcal/mol |
3.89026 kcal/mol |
266 281@LB@ | |@LB@5'-ACU...CGGUC UU GUUCA...GGG-3'@LB@ GGC UGCGAUGGU@LB@ ||| |||:||||:@LB@ CCG ACGUUACCG@LB@3'-UUU...AGUCA UU GGUUG...UUG-5'@LB@ | |@LB@ 55 40@LB@@LB@@LB@Energy -11.70 kcal/mol@LB@Hybridization Energy -20.909 kcal/mol@LB@Unfolding Energy - mRNA 5.32115 kcal/mol@LB@Unfolding Energy - sRNA 3.89026 kcal/mol@LB@@LB@Position - mRNA 267 -- 280@LB@Position - sRNA 41 -- 54@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 41 -- 47@LB@ |
101 |
0.009525 |
0.3118 |
b2101 |
yegW |
-12.09 |
0.042153 |
47 -- 73 |
39 -- 66 |
putative DNA-binding transcriptional regulator |
|
_____________46____________________________74\n_____________|_____________________________|\n5'-CGG...GACCG____CAGG___A_____U___________GGUGG...AAA-3'\n______________UGGA____UAG_UGGCA___CAAUGGUCC\n______________||||____:||_|||||___||||||:||\n______________ACCU____GUC_ACCGU___GUUACCGGG\n3'-UUU...AUACA____UUUA_________UAC_________UUGUC...UUG-5'\n_____________|_____________________________|\n_____________67____________________________38\n |
67 -- 73 |
39 -- 45 |
-28.0375 kcal/mol |
9.27172 kcal/mol |
6.67256 kcal/mol |
46 74@LB@ | |@LB@5'-CGG...GACCG CAGG A U GGUGG...AAA-3'@LB@ UGGA UAG UGGCA CAAUGGUCC@LB@ |||| :|| ||||| ||||||:||@LB@ ACCU GUC ACCGU GUUACCGGG@LB@3'-UUU...AUACA UUUA UAC UUGUC...UUG-5'@LB@ | |@LB@ 67 38@LB@@LB@@LB@Energy -12.09 kcal/mol@LB@Hybridization Energy -28.0375 kcal/mol@LB@Unfolding Energy - mRNA 9.27172 kcal/mol@LB@Unfolding Energy - sRNA 6.67256 kcal/mol@LB@@LB@Position - mRNA 47 -- 73@LB@Position - sRNA 39 -- 66@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 39 -- 45@LB@ |
102 |
0.009578 |
0.3118 |
b1247 |
oppF |
-10.09 |
0.116865 |
264 -- 290 |
39 -- 63 |
oligopeptide ABC transporter ATPase |
|
_____________263__________________________291\n_____________|____________________________|\n5'-GCG...ACUUU______AA__A______A__________UGGCA...CGC-3'\n______________GAAAUC__AG_UGGCAA__CAGUGGUUC\n______________:|||||__||_||||||__||:|||::|\n______________UUUUAG__UC_ACCGUU__GUUACCGGG\n3'-UUU...CAACC_________________AC_________UUGUC...UUG-5'\n_____________|____________________________|\n_____________64___________________________38\n |
284 -- 290 |
39 -- 45 |
-23.4236 kcal/mol |
6.69228 kcal/mol |
6.64584 kcal/mol |
263 291@LB@ | |@LB@5'-GCG...ACUUU AA A A UGGCA...CGC-3'@LB@ GAAAUC AG UGGCAA CAGUGGUUC@LB@ :||||| || |||||| ||:|||::|@LB@ UUUUAG UC ACCGUU GUUACCGGG@LB@3'-UUU...CAACC AC UUGUC...UUG-5'@LB@ | |@LB@ 64 38@LB@@LB@@LB@Energy -10.09 kcal/mol@LB@Hybridization Energy -23.4236 kcal/mol@LB@Unfolding Energy - mRNA 6.69228 kcal/mol@LB@Unfolding Energy - sRNA 6.64584 kcal/mol@LB@@LB@Position - mRNA 264 -- 290@LB@Position - sRNA 39 -- 63@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 39 -- 45@LB@ |
103 |
0.009615 |
0.3118 |
b4045 |
yjbJ |
-8.83 |
0.207064 |
48 -- 67 |
39 -- 60 |
stress-induced protein UPF0337 family |
|
_____________47______________________68\n_____________|_______________________|\n5'-CGU...GCGGC____C_______________A__UGGUU...AAG-3'\n______________GUCA_UGGC___GCAAUGGU_CC\n______________:|||_||||___|||||||:_||\n______________UAGU_ACCG___CGUUACCG_GG\n3'-UUU...CCUUU____C____UUA___________UUGUC...UUG-5'\n_____________|_______________________|\n_____________61______________________38\n |
58 -- 64 |
41 -- 47 |
-22.6105 kcal/mol |
7.1744 kcal/mol |
6.61009 kcal/mol |
47 68@LB@ | |@LB@5'-CGU...GCGGC C A UGGUU...AAG-3'@LB@ GUCA UGGC GCAAUGGU CC@LB@ :||| |||| |||||||: ||@LB@ UAGU ACCG CGUUACCG GG@LB@3'-UUU...CCUUU C UUA UUGUC...UUG-5'@LB@ | |@LB@ 61 38@LB@@LB@@LB@Energy -8.83 kcal/mol@LB@Hybridization Energy -22.6105 kcal/mol@LB@Unfolding Energy - mRNA 7.1744 kcal/mol@LB@Unfolding Energy - sRNA 6.61009 kcal/mol@LB@@LB@Position - mRNA 48 -- 67@LB@Position - sRNA 39 -- 60@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 41 -- 47@LB@ |
104 |
0.009649 |
0.3118 |
b0910 |
cmk |
-9.70 |
0.140357 |
282 -- 294 |
41 -- 53 |
cytidylate kinase |
|
_____________281___________295\n_____________|_____________|\n5'-CCG...CGGAA___U_________AUCUGC-3'\n______________GCG_UGCAAUGGC\n______________||:_|||||||||\n______________CGU_ACGUUACCG\n3'-UUU...GUCAC___U_________GGUUG...UUG-5'\n_____________|_____________|\n_____________54____________40\n |
288 -- 294 |
41 -- 47 |
-19.191 kcal/mol |
5.61932 kcal/mol |
3.8759 kcal/mol |
281 295@LB@ | |@LB@5'-CCG...CGGAA U AUCUGC-3'@LB@ GCG UGCAAUGGC@LB@ ||: |||||||||@LB@ CGU ACGUUACCG@LB@3'-UUU...GUCAC U GGUUG...UUG-5'@LB@ | |@LB@ 54 40@LB@@LB@@LB@Energy -9.70 kcal/mol@LB@Hybridization Energy -19.191 kcal/mol@LB@Unfolding Energy - mRNA 5.61932 kcal/mol@LB@Unfolding Energy - sRNA 3.8759 kcal/mol@LB@@LB@Position - mRNA 282 -- 294@LB@Position - sRNA 41 -- 53@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 41 -- 47@LB@ |
105 |
0.009758 |
0.3118 |
b4478 |
dgoD |
-14.76 |
0.009064 |
185 -- 203 |
43 -- 60 |
D-galactonate dehydratase |
|
_____________184_________________204\n_____________|___________________|\n5'-AAA...GGCGU___G__A____________AAAAU...UGA-3'\n______________AUC_AG_GGCAGUGCAAUG\n______________|||_||_||||:|||||||\n______________UAG_UC_CCGUUACGUUAC\n3'-UUU...CCUUU______A____________CGGGU...UUG-5'\n_____________|___________________|\n_____________61__________________42\n |
197 -- 203 |
43 -- 49 |
-22.2033 kcal/mol |
3.91427 kcal/mol |
3.52557 kcal/mol |
184 204@LB@ | |@LB@5'-AAA...GGCGU G A AAAAU...UGA-3'@LB@ AUC AG GGCAGUGCAAUG@LB@ ||| || ||||:|||||||@LB@ UAG UC CCGUUACGUUAC@LB@3'-UUU...CCUUU A CGGGU...UUG-5'@LB@ | |@LB@ 61 42@LB@@LB@@LB@Energy -14.76 kcal/mol@LB@Hybridization Energy -22.2033 kcal/mol@LB@Unfolding Energy - mRNA 3.91427 kcal/mol@LB@Unfolding Energy - sRNA 3.52557 kcal/mol@LB@@LB@Position - mRNA 185 -- 203@LB@Position - sRNA 43 -- 60@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 43 -- 49@LB@ |
106 |
0.009895 |
0.3118 |
b3962 |
sthA |
-8.25 |
0.262922 |
71 -- 97 |
8 -- 33 |
pyridine nucleotide transhydrogenase soluble |
|
_____________70___________________________98\n_____________|____________________________|\n5'-UAC...GGGCA_________AACA______AGC______CGCUC...CAG-3'\n______________AAAGUAAGA_____GACAA___AAAGGC\n______________|||:|||:|_____|||||___||||||\n______________UUUUAUUUU_____CUGUU___UUUCCG\n3'-UUU...UUGUC_________AGACA_____A________UAUAUUG-5'\n_____________|____________________________|\n_____________34___________________________7\n |
73 -- 79 |
25 -- 31 |
-15.3826 kcal/mol |
2.09876 kcal/mol |
5.02883 kcal/mol |
70 98@LB@ | |@LB@5'-UAC...GGGCA AACA AGC CGCUC...CAG-3'@LB@ AAAGUAAGA GACAA AAAGGC@LB@ |||:|||:| ||||| ||||||@LB@ UUUUAUUUU CUGUU UUUCCG@LB@3'-UUU...UUGUC AGACA A UAUAUUG-5'@LB@ | |@LB@ 34 7@LB@@LB@@LB@Energy -8.25 kcal/mol@LB@Hybridization Energy -15.3826 kcal/mol@LB@Unfolding Energy - mRNA 2.09876 kcal/mol@LB@Unfolding Energy - sRNA 5.02883 kcal/mol@LB@@LB@Position - mRNA 71 -- 97@LB@Position - sRNA 8 -- 33@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 25 -- 31@LB@ |
107 |
0.009921 |
0.3118 |
b0836 |
bssR |
-14.44 |
0.011050 |
12 -- 65 |
14 -- 65 |
repressor of biofilm formation by indole transport regulation |
|
_____________11____________________________________________________________66\n_____________|_____________________________________________________________|\n5'-AUU...UUACA_____G___________________A___U______UUCUG____________AUC_____CUCAU...ACA-3'\n______________GGAAA_GUCAG_GGCAG______GG_UUC_ACAGAG_____GAUAAAAUUUGU___GCAAU\n______________|||||_:||||_||||:______||_::|_|||||:_____:|||||||:|||___:||||\n______________CCUUU_UAGUC_CCGUU______CC_GGG_UGUCUU_____UUAUUUUAGACA___UGUUA\n3'-UUU...UACAA___________A_____ACGUUA______U_______________________C_______UUUCC...UUG-5'\n_____________|_____________________________________________________________|\n_____________66____________________________________________________________13\n |
46 -- 52 |
25 -- 31 |
-37.4064 kcal/mol |
11.8508 kcal/mol |
11.1173 kcal/mol |
11 66@LB@ | |@LB@5'-AUU...UUACA G A U UUCUG AUC CUCAU...ACA-3'@LB@ GGAAA GUCAG GGCAG GG UUC ACAGAG GAUAAAAUUUGU GCAAU@LB@ ||||| :|||| ||||: || ::| |||||: :|||||||:||| :||||@LB@ CCUUU UAGUC CCGUU CC GGG UGUCUU UUAUUUUAGACA UGUUA@LB@3'-UUU...UACAA A ACGUUA U C UUUCC...UUG-5'@LB@ | |@LB@ 66 13@LB@@LB@@LB@Energy -14.44 kcal/mol@LB@Hybridization Energy -37.4064 kcal/mol@LB@Unfolding Energy - mRNA 11.8508 kcal/mol@LB@Unfolding Energy - sRNA 11.1173 kcal/mol@LB@@LB@Position - mRNA 12 -- 65@LB@Position - sRNA 14 -- 65@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 25 -- 31@LB@ |
108 |
0.01004 |
0.3126 |
b2422 |
cysA |
-10.23 |
0.108830 |
144 -- 158 |
52 -- 72 |
sulfate/thiosulfate transporter subunit |
|
_____________143___________________159\n_____________|_____________________|\n5'-GGU...AAAAA_____________________GCCUG...UGC-3'\n______________GUAUGUUG______CAGUGGC\n______________:|||||||______|||||||\n______________UAUACAAC______GUCACCG\n3'-UUU...AAAAA________CUUUUA_______UUACG...UUG-5'\n_____________|_____________________|\n_____________73____________________51\n |
152 -- 158 |
52 -- 58 |
-18.4697 kcal/mol |
5.08596 kcal/mol |
3.1495 kcal/mol |
143 159@LB@ | |@LB@5'-GGU...AAAAA GCCUG...UGC-3'@LB@ GUAUGUUG CAGUGGC@LB@ :||||||| |||||||@LB@ UAUACAAC GUCACCG@LB@3'-UUU...AAAAA CUUUUA UUACG...UUG-5'@LB@ | |@LB@ 73 51@LB@@LB@@LB@Energy -10.23 kcal/mol@LB@Hybridization Energy -18.4697 kcal/mol@LB@Unfolding Energy - mRNA 5.08596 kcal/mol@LB@Unfolding Energy - sRNA 3.1495 kcal/mol@LB@@LB@Position - mRNA 144 -- 158@LB@Position - sRNA 52 -- 72@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 52 -- 58@LB@ |
109 |
0.01013 |
0.3127 |
b3805 |
hemC |
-12.29 |
0.037947 |
146 -- 209 |
1 -- 60 |
hydroxymethylbilane synthase |
|
_____________145_____________________________________________________________________210\n_____________|_______________________________________________________________________|\n5'-AAA...CUGAC____CUC_____AGG____UAG_____A________U____________________CAA______UA___AAUGU...GCC-3'\n______________AUCA___UGGCA___AUGU___GAUGG_CC_ACGGA_GAUAA______UGACGGUAA___GCAUGU__GAC\n______________||||___|||||___|||:___:||||_||_||:||_:||||______||||::|||___||||:|__:||\n______________UAGU___ACCGU___UACG___UUACC_GG_UGUCU_UUAUU______ACUGUUAUU___CGUAUA__UUG\n3'-UUU...CCUUU____C______________________G__U_____U_____UUAGAC_________UC____________-5'\n_____________|______________________________________________________________________|\n_____________61_____________________________________________________________________1\n |
189 -- 195 |
12 -- 18 |
-39.6606 kcal/mol |
15.2176 kcal/mol |
12.1554 kcal/mol |
145 210@LB@ | |@LB@5'-AAA...CUGAC CUC AGG UAG A U CAA UA AAUGU...GCC-3'@LB@ AUCA UGGCA AUGU GAUGG CC ACGGA GAUAA UGACGGUAA GCAUGU GAC@LB@ |||| ||||| |||: :|||| || ||:|| :|||| ||||::||| ||||:| :||@LB@ UAGU ACCGU UACG UUACC GG UGUCU UUAUU ACUGUUAUU CGUAUA UUG@LB@3'-UUU...CCUUU C G U U UUAGAC UC -5'@LB@ | |@LB@ 61 1@LB@@LB@@LB@Energy -12.29 kcal/mol@LB@Hybridization Energy -39.6606 kcal/mol@LB@Unfolding Energy - mRNA 15.2176 kcal/mol@LB@Unfolding Energy - sRNA 12.1554 kcal/mol@LB@@LB@Position - mRNA 146 -- 209@LB@Position - sRNA 1 -- 60@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 12 -- 18@LB@ |
110 |
0.01026 |
0.313 |
b0063 |
araB |
-12.48 |
0.034183 |
202 -- 260 |
1 -- 55 |
L-ribulokinase |
|
_____________201___________________________________________________________261\n_____________|_____________________________________________________________|\n5'-CGG...AACGA_______U____U_____U____UUU__C_____U___________GCUUU____GUG___UGCGC...GGU-3'\n______________UGGCGAU_GCAA_UGGCC_CGAU___GG_AGUGA__UCUGUG_CGA_____GGCG___GAC\n______________||||:||_||||_|||||_|:|:___|:_|:|:|__||||||_|:|_____|||:___:||\n______________ACCGUUA_CGUU_ACCGG_GUUG___CU_UUAUU__AGACAC_GUU_____CCGU___UUG\n3'-UUU...UAGUC_______________________U____U_____UU______U___AUUU_____AUA___-5'\n_____________|____________________________________________________________|\n_____________56___________________________________________________________1\n |
202 -- 208 |
49 -- 55 |
-46.0779 kcal/mol |
21.5533 kcal/mol |
12.0455 kcal/mol |
201 261@LB@ | |@LB@5'-CGG...AACGA U U U UUU C U GCUUU GUG UGCGC...GGU-3'@LB@ UGGCGAU GCAA UGGCC CGAU GG AGUGA UCUGUG CGA GGCG GAC@LB@ ||||:|| |||| ||||| |:|: |: |:|:| |||||| |:| |||: :||@LB@ ACCGUUA CGUU ACCGG GUUG CU UUAUU AGACAC GUU CCGU UUG@LB@3'-UUU...UAGUC U U UU U AUUU AUA -5'@LB@ | |@LB@ 56 1@LB@@LB@@LB@Energy -12.48 kcal/mol@LB@Hybridization Energy -46.0779 kcal/mol@LB@Unfolding Energy - mRNA 21.5533 kcal/mol@LB@Unfolding Energy - sRNA 12.0455 kcal/mol@LB@@LB@Position - mRNA 202 -- 260@LB@Position - sRNA 1 -- 55@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 49 -- 55@LB@ |
111 |
0.01033 |
0.313 |
b1120 |
cobB |
-14.51 |
0.010573 |
178 -- 236 |
7 -- 64 |
deacetylase of acs and cheY chemotaxis regulator |
|
_____________177______________________________________________________________237\n_____________|________________________________________________________________|\n5'-CGC...UUUCA____UAA______GCCG__A_______AAA___CA______C____GUAC______________GGAAU...AUC-3'\n______________GAGA___AGUGGU____GA_GCAAUGG___AAC__AGAGUA___UC____UGACAG___GGGCA\n______________||:|___|||||:____:|_|||||||___|||__|:|:||___||____|||||:___:||||\n______________CUUU___UCACCG____UU_CGUUACC___UUG__UUUUAU___AG____ACUGUU___UCCGU\n3'-UUU...ACAAC____UAG____________A_______GGG___UC______UUU__AC________AUU_____AUAUUG-5'\n_____________|________________________________________________________________|\n_____________65_______________________________________________________________6\n |
198 -- 204 |
42 -- 48 |
-37.7371 kcal/mol |
11.0723 kcal/mol |
12.1536 kcal/mol |
177 237@LB@ | |@LB@5'-CGC...UUUCA UAA GCCG A AAA CA C GUAC GGAAU...AUC-3'@LB@ GAGA AGUGGU GA GCAAUGG AAC AGAGUA UC UGACAG GGGCA@LB@ ||:| |||||: :| ||||||| ||| |:|:|| || |||||: :||||@LB@ CUUU UCACCG UU CGUUACC UUG UUUUAU AG ACUGUU UCCGU@LB@3'-UUU...ACAAC UAG A GGG UC UUU AC AUU AUAUUG-5'@LB@ | |@LB@ 65 6@LB@@LB@@LB@Energy -14.51 kcal/mol@LB@Hybridization Energy -37.7371 kcal/mol@LB@Unfolding Energy - mRNA 11.0723 kcal/mol@LB@Unfolding Energy - sRNA 12.1536 kcal/mol@LB@@LB@Position - mRNA 178 -- 236@LB@Position - sRNA 7 -- 64@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 42 -- 48@LB@ |
112 |
0.0105 |
0.3154 |
b2136 |
yohD |
-14.01 |
0.014269 |
227 -- 295 |
6 -- 72 |
DedA family inner membrane protein |
|
_____________226_____________________________________________________________________296\n_____________|_______________________________________________________________________|\n5'-GAU...UCACA_____GUUAUGCCG__C____________A____________________C_____UUUGCUG________UGCGG-3'\n______________AUAUG_________CG_UGGUGAU_CGGU_GCCUGGCGGAAGGUGAAA_C_GUGAC_______GGAGGCGU\n______________|||||_________|:_|||::||_|::|_|||:::|:|||::|:|||_|_|||||_______::||||:|\n______________UAUAC_________GU_ACCGUUA_GUUA_CGGGUUGUCUUUUAUUUU_G_CACUG_______UUUCCGUA\n3'-UUU...AAAAA_____AACCUUUUA__C_______C____C__________________A_A_____UUA____________UAUUG-5'\n_____________|_______________________________________________________________________|\n_____________73______________________________________________________________________5\n |
289 -- 295 |
6 -- 12 |
-51.7055 kcal/mol |
25.533 kcal/mol |
12.1614 kcal/mol |
226 296@LB@ | |@LB@5'-GAU...UCACA GUUAUGCCG C A C UUUGCUG UGCGG-3'@LB@ AUAUG CG UGGUGAU CGGU GCCUGGCGGAAGGUGAAA C GUGAC GGAGGCGU@LB@ ||||| |: |||::|| |::| |||:::|:|||::|:||| | ||||| ::||||:|@LB@ UAUAC GU ACCGUUA GUUA CGGGUUGUCUUUUAUUUU G CACUG UUUCCGUA@LB@3'-UUU...AAAAA AACCUUUUA C C C A A UUA UAUUG-5'@LB@ | |@LB@ 73 5@LB@@LB@@LB@Energy -14.01 kcal/mol@LB@Hybridization Energy -51.7055 kcal/mol@LB@Unfolding Energy - mRNA 25.533 kcal/mol@LB@Unfolding Energy - sRNA 12.1614 kcal/mol@LB@@LB@Position - mRNA 227 -- 295@LB@Position - sRNA 6 -- 72@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 6 -- 12@LB@ |
113 |
0.01136 |
0.3326 |
b3417 |
malP |
-12.46 |
0.034450 |
250 -- 272 |
38 -- 60 |
maltodextrin phosphorylase |
|
_____________249_____________________273\n_____________|_______________________|\n5'-ACA...UUCAC___________C__U________AAUUC...GCC-3'\n______________GUCAGUGGCAG_GU_AUGGCUUA\n______________:|||||||||:_|:_|||||::|\n______________UAGUCACCGUU_CG_UACCGGGU\n3'-UUU...CCUUU___________A__U________UGUCU...UUG-5'\n_____________|_______________________|\n_____________61______________________37\n |
266 -- 272 |
38 -- 44 |
-30.8718 kcal/mol |
11.793 kcal/mol |
6.61394 kcal/mol |
249 273@LB@ | |@LB@5'-ACA...UUCAC C U AAUUC...GCC-3'@LB@ GUCAGUGGCAG GU AUGGCUUA@LB@ :|||||||||: |: |||||::|@LB@ UAGUCACCGUU CG UACCGGGU@LB@3'-UUU...CCUUU A U UGUCU...UUG-5'@LB@ | |@LB@ 61 37@LB@@LB@@LB@Energy -12.46 kcal/mol@LB@Hybridization Energy -30.8718 kcal/mol@LB@Unfolding Energy - mRNA 11.793 kcal/mol@LB@Unfolding Energy - sRNA 6.61394 kcal/mol@LB@@LB@Position - mRNA 250 -- 272@LB@Position - sRNA 38 -- 60@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 38 -- 44@LB@ |
114 |
0.01136 |
0.3326 |
b2203 |
napB |
-12.98 |
0.025868 |
242 -- 255 |
39 -- 54 |
nitrate reductase small cytochrome C550 subunit periplasmic |
|
_____________241______________256\n_____________|________________|\n5'-ACC...UGGAC________________UGGUG...UUA-3'\n______________GGCGAUGC__UGGCCC\n______________|||:||||__||||||\n______________CCGUUACG__ACCGGG\n3'-UUU...AGUCA________UU______UUGUC...UUG-5'\n_____________|________________|\n_____________55_______________38\n |
243 -- 249 |
47 -- 53 |
-25.1467 kcal/mol |
7.40583 kcal/mol |
4.76022 kcal/mol |
241 256@LB@ | |@LB@5'-ACC...UGGAC UGGUG...UUA-3'@LB@ GGCGAUGC UGGCCC@LB@ |||:|||| ||||||@LB@ CCGUUACG ACCGGG@LB@3'-UUU...AGUCA UU UUGUC...UUG-5'@LB@ | |@LB@ 55 38@LB@@LB@@LB@Energy -12.98 kcal/mol@LB@Hybridization Energy -25.1467 kcal/mol@LB@Unfolding Energy - mRNA 7.40583 kcal/mol@LB@Unfolding Energy - sRNA 4.76022 kcal/mol@LB@@LB@Position - mRNA 242 -- 255@LB@Position - sRNA 39 -- 54@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 47 -- 53@LB@ |
115 |
0.0114 |
0.3326 |
b2531 |
iscR |
-8.61 |
0.227442 |
42 -- 64 |
8 -- 31 |
isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor |
|
_____________41_______________________65\n_____________|________________________|\n5'-AUG...GCCAC_______AAA______C_______UAAAU...AAC-3'\n______________GAUAAAA____UGGCA_UGAAGGU\n______________:||||||____||:||_|:||||:\n______________UUAUUUU____ACUGU_AUUUCCG\n3'-UUU...GUCUU_______AGAC_____U_______UAUAUUG-5'\n_____________|________________________|\n_____________32_______________________7\n |
58 -- 64 |
8 -- 14 |
-15.5579 kcal/mol |
1.96266 kcal/mol |
4.98963 kcal/mol |
41 65@LB@ | |@LB@5'-AUG...GCCAC AAA C UAAAU...AAC-3'@LB@ GAUAAAA UGGCA UGAAGGU@LB@ :|||||| ||:|| |:||||:@LB@ UUAUUUU ACUGU AUUUCCG@LB@3'-UUU...GUCUU AGAC U UAUAUUG-5'@LB@ | |@LB@ 32 7@LB@@LB@@LB@Energy -8.61 kcal/mol@LB@Hybridization Energy -15.5579 kcal/mol@LB@Unfolding Energy - mRNA 1.96266 kcal/mol@LB@Unfolding Energy - sRNA 4.98963 kcal/mol@LB@@LB@Position - mRNA 42 -- 64@LB@Position - sRNA 8 -- 31@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 8 -- 14@LB@ |
116 |
0.0115 |
0.3326 |
b3770 |
ilvE |
-6.73 |
0.460342 |
227 -- 277 |
1 -- 67 |
branched-chain amino acid aminotransferase |
|
_____________226__________________________________________________________________278\n_____________|____________________________________________________________________|\n5'-UUU...UACAU____U______A___G______________C_____________________CG____U_________GUCGC...GCA-3'\n______________UUGG____UCA_UGG_GA___GAUGGUUCG_UGGGAA___________GACG__AAGG_GCAUGUGAU\n______________||||____|||_|||_:|___:||||::|:_::|:||___________|||:__||:|_||||:|:|:\n______________AACC____AGU_ACC_UU___UUACCGGGU_GUCUUU___________CUGU__UUUC_CGUAUAUUG\n3'-UUU...UAUAC____UUUU___C___G__ACG_________U______UAUUUUAGACA____UA______________-5'\n_____________|___________________________________________________________________|\n_____________68__________________________________________________________________1\n |
269 -- 275 |
3 -- 9 |
-35.2937 kcal/mol |
16.4013 kcal/mol |
12.1612 kcal/mol |
226 278@LB@ | |@LB@5'-UUU...UACAU U A G C CG U GUCGC...GCA-3'@LB@ UUGG UCA UGG GA GAUGGUUCG UGGGAA GACG AAGG GCAUGUGAU@LB@ |||| ||| ||| :| :||||::|: ::|:|| |||: ||:| ||||:|:|:@LB@ AACC AGU ACC UU UUACCGGGU GUCUUU CUGU UUUC CGUAUAUUG@LB@3'-UUU...UAUAC UUUU C G ACG U UAUUUUAGACA UA -5'@LB@ | |@LB@ 68 1@LB@@LB@@LB@Energy -6.73 kcal/mol@LB@Hybridization Energy -35.2937 kcal/mol@LB@Unfolding Energy - mRNA 16.4013 kcal/mol@LB@Unfolding Energy - sRNA 12.1612 kcal/mol@LB@@LB@Position - mRNA 227 -- 277@LB@Position - sRNA 1 -- 67@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 3 -- 9@LB@ |
117 |
0.01164 |
0.3326 |
b1119 |
nagK |
-13.64 |
0.017780 |
246 -- 275 |
42 -- 70 |
N-acetyl-D-glucosamine kinase |
|
_____________245_____________________________276\n_____________|_______________________________|\n5'-UCA...UUGGC_____U__UAG_____C_____U________GAAAA...GUG-3'\n______________GUGUU_GA____CGGU_GGCAG_UGCAGUGG\n______________:||||_||____|:||_||||:_||||:|||\n______________UACAA_CU____GUCA_CCGUU_ACGUUACC\n3'-UUU...AAAUA_____C__UUUA___________________GGGUU...UUG-5'\n_____________|_______________________________|\n_____________71______________________________41\n |
269 -- 275 |
42 -- 48 |
-28.344 kcal/mol |
8.3584 kcal/mol |
6.34928 kcal/mol |
245 276@LB@ | |@LB@5'-UCA...UUGGC U UAG C U GAAAA...GUG-3'@LB@ GUGUU GA CGGU GGCAG UGCAGUGG@LB@ :|||| || |:|| ||||: ||||:|||@LB@ UACAA CU GUCA CCGUU ACGUUACC@LB@3'-UUU...AAAUA C UUUA GGGUU...UUG-5'@LB@ | |@LB@ 71 41@LB@@LB@@LB@Energy -13.64 kcal/mol@LB@Hybridization Energy -28.344 kcal/mol@LB@Unfolding Energy - mRNA 8.3584 kcal/mol@LB@Unfolding Energy - sRNA 6.34928 kcal/mol@LB@@LB@Position - mRNA 246 -- 275@LB@Position - sRNA 42 -- 70@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 42 -- 48@LB@ |
118 |
0.01176 |
0.3326 |
b3601 |
mtlR |
-9.20 |
0.175568 |
190 -- 199 |
44 -- 53 |
mannitol operon repressor |
|
_____________189________200\n_____________|__________|\n5'-UAU...AUAAA__________AAUGG...UUG-3'\n______________GCAAUGCAAU\n______________||||||||||\n______________CGUUACGUUA\n3'-UUU...GUCAC__________CCGGG...UUG-5'\n_____________|__________|\n_____________54_________43\n |
193 -- 199 |
44 -- 50 |
-14.2394 kcal/mol |
1.82821 kcal/mol |
3.20822 kcal/mol |
189 200@LB@ | |@LB@5'-UAU...AUAAA AAUGG...UUG-3'@LB@ GCAAUGCAAU@LB@ ||||||||||@LB@ CGUUACGUUA@LB@3'-UUU...GUCAC CCGGG...UUG-5'@LB@ | |@LB@ 54 43@LB@@LB@@LB@Energy -9.20 kcal/mol@LB@Hybridization Energy -14.2394 kcal/mol@LB@Unfolding Energy - mRNA 1.82821 kcal/mol@LB@Unfolding Energy - sRNA 3.20822 kcal/mol@LB@@LB@Position - mRNA 190 -- 199@LB@Position - sRNA 44 -- 53@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 44 -- 50@LB@ |
119 |
0.01177 |
0.3326 |
b4262 |
lptG |
-9.06 |
0.186805 |
47 -- 70 |
7 -- 29 |
lipopolysaccharide export ABC permease |
|
_____________46_______________________71\n_____________|________________________|\n5'-CCA...CUCCC_______GAAC_____________AGCUG...UCA-3'\n______________UGAAAUC____GGCGGUAAAGGUA\n______________|:|||||____|:|::||||||:|\n______________AUUUUAG____CUGUUAUUUCCGU\n3'-UUU...CUUUU_______ACA______________AUAUUG-5'\n_____________|________________________|\n_____________30_______________________6\n |
64 -- 70 |
7 -- 13 |
-21.2282 kcal/mol |
7.28231 kcal/mol |
4.88318 kcal/mol |
46 71@LB@ | |@LB@5'-CCA...CUCCC GAAC AGCUG...UCA-3'@LB@ UGAAAUC GGCGGUAAAGGUA@LB@ |:||||| |:|::||||||:|@LB@ AUUUUAG CUGUUAUUUCCGU@LB@3'-UUU...CUUUU ACA AUAUUG-5'@LB@ | |@LB@ 30 6@LB@@LB@@LB@Energy -9.06 kcal/mol@LB@Hybridization Energy -21.2282 kcal/mol@LB@Unfolding Energy - mRNA 7.28231 kcal/mol@LB@Unfolding Energy - sRNA 4.88318 kcal/mol@LB@@LB@Position - mRNA 47 -- 70@LB@Position - sRNA 7 -- 29@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 7 -- 13@LB@ |
120 |
0.01191 |
0.3337 |
b0354 |
yaiL |
-10.86 |
0.080118 |
189 -- 207 |
50 -- 67 |
DUF2058 family protein |
|
_____________188_________________208\n_____________|___________________|\n5'-GUA...CGGGU_______CAA__A______AACUU...UUC-3'\n______________UUGGAAA___AG_UGGCAA\n______________|||||||___||_||||||\n______________AACCUUU___UC_ACCGUU\n3'-UUU...UAUAC_______UAG_________ACGUU...UUG-5'\n_____________|___________________|\n_____________68__________________49\n |
189 -- 195 |
61 -- 67 |
-16.0374 kcal/mol |
2.05851 kcal/mol |
3.12147 kcal/mol |
188 208@LB@ | |@LB@5'-GUA...CGGGU CAA A AACUU...UUC-3'@LB@ UUGGAAA AG UGGCAA@LB@ ||||||| || ||||||@LB@ AACCUUU UC ACCGUU@LB@3'-UUU...UAUAC UAG ACGUU...UUG-5'@LB@ | |@LB@ 68 49@LB@@LB@@LB@Energy -10.86 kcal/mol@LB@Hybridization Energy -16.0374 kcal/mol@LB@Unfolding Energy - mRNA 2.05851 kcal/mol@LB@Unfolding Energy - sRNA 3.12147 kcal/mol@LB@@LB@Position - mRNA 189 -- 207@LB@Position - sRNA 50 -- 67@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 61 -- 67@LB@ |
121 |
0.01216 |
0.338 |
b3416 |
malQ |
-13.35 |
0.020947 |
179 -- 225 |
13 -- 54 |
4-alpha-glucanotransferase (amylomaltase) |
|
_____________178______________________________________________226\n_____________|________________________________________________|\n5'-GCG...UGGCA_____AAC__U__GGAA_____________C___C_____________CCGCG...CCA-3'\n______________GGCAA___GC_AA____GCUCGAUGGAAAG_AAA_GUCUG_GAUAAUG\n______________|||||___||_||____||:|:|::||||:_|||_:||||_||:|||:\n______________CCGUU___CG_UU____CGGGUUGUCUUUU_UUU_UAGAC_CUGUUAU\n3'-UUU...AGUCA_____A_______AC_______________A_________A_______UUCCG...UUG-5'\n_____________|________________________________________________|\n_____________55_______________________________________________12\n |
219 -- 225 |
13 -- 19 |
-33.3316 kcal/mol |
8.88616 kcal/mol |
11.0933 kcal/mol |
178 226@LB@ | |@LB@5'-GCG...UGGCA AAC U GGAA C C CCGCG...CCA-3'@LB@ GGCAA GC AA GCUCGAUGGAAAG AAA GUCUG GAUAAUG@LB@ ||||| || || ||:|:|::||||: ||| :|||| ||:|||:@LB@ CCGUU CG UU CGGGUUGUCUUUU UUU UAGAC CUGUUAU@LB@3'-UUU...AGUCA A AC A A UUCCG...UUG-5'@LB@ | |@LB@ 55 12@LB@@LB@@LB@Energy -13.35 kcal/mol@LB@Hybridization Energy -33.3316 kcal/mol@LB@Unfolding Energy - mRNA 8.88616 kcal/mol@LB@Unfolding Energy - sRNA 11.0933 kcal/mol@LB@@LB@Position - mRNA 179 -- 225@LB@Position - sRNA 13 -- 54@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 13 -- 19@LB@ |
122 |
0.01263 |
0.3462 |
b0537 |
intD |
-10.49 |
0.096065 |
54 -- 80 |
48 -- 76 |
DLP12 prophage; putative phage integrase |
|
_____________53____________________________81\n_____________|_____________________________|\n5'-GAG...AUUGG____________________A________ACGCA...AAG-3'\n______________UUUUGUAU_UUGGGGAG_CA_UGGCGAUG\n______________||||:|||_||||::|:_||_||||:|||\n______________AAAAUAUA_AACCUUUU_GU_ACCGUUAC\n3'-UUU...ACAGA________C________A__C________GUUAC...UUG-5'\n_____________|_____________________________|\n_____________77____________________________47\n |
74 -- 80 |
48 -- 54 |
-25.3626 kcal/mol |
9.83015 kcal/mol |
5.0412 kcal/mol |
53 81@LB@ | |@LB@5'-GAG...AUUGG A ACGCA...AAG-3'@LB@ UUUUGUAU UUGGGGAG CA UGGCGAUG@LB@ ||||:||| ||||::|: || ||||:|||@LB@ AAAAUAUA AACCUUUU GU ACCGUUAC@LB@3'-UUU...ACAGA C A C GUUAC...UUG-5'@LB@ | |@LB@ 77 47@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -25.3626 kcal/mol@LB@Unfolding Energy - mRNA 9.83015 kcal/mol@LB@Unfolding Energy - sRNA 5.0412 kcal/mol@LB@@LB@Position - mRNA 54 -- 80@LB@Position - sRNA 48 -- 76@LB@Position Seed - mRNA 74 -- 80@LB@Position Seed - sRNA 48 -- 54@LB@ |
123 |
0.01273 |
0.3462 |
b1817 |
manX |
-9.41 |
0.160028 |
181 -- 191 |
9 -- 19 |
fused mannose-specific PTS enzymes: IIA component/IIB component |
|
_____________180_________192\n_____________|___________|\n5'-UUA...UUAAC___________AGGUA...GGA-3'\n______________GAUAAUAAAGG\n______________||:||||||||\n______________CUGUUAUUUCC\n3'-UUU...AGACA___________GUAUAUUG-5'\n_____________|___________|\n_____________20__________8\n |
185 -- 191 |
9 -- 15 |
-11.4394 kcal/mol |
1.08042 kcal/mol |
0.949641 kcal/mol |
180 192@LB@ | |@LB@5'-UUA...UUAAC AGGUA...GGA-3'@LB@ GAUAAUAAAGG@LB@ ||:||||||||@LB@ CUGUUAUUUCC@LB@3'-UUU...AGACA GUAUAUUG-5'@LB@ | |@LB@ 20 8@LB@@LB@@LB@Energy -9.41 kcal/mol@LB@Hybridization Energy -11.4394 kcal/mol@LB@Unfolding Energy - mRNA 1.08042 kcal/mol@LB@Unfolding Energy - sRNA 0.949641 kcal/mol@LB@@LB@Position - mRNA 181 -- 191@LB@Position - sRNA 9 -- 19@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 9 -- 15@LB@ |
124 |
0.01277 |
0.3462 |
b2812 |
tcdA |
-10.63 |
0.089790 |
208 -- 228 |
41 -- 66 |
tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA |
|
_____________207________________________229\n_____________|__________________________|\n5'-GUG...GUCUG___U______________________GUCAG...UUU-3'\n______________UGG__AAUUAGUG___AUGC_AUGGC\n______________|||__|||:||||___||||_|||||\n______________ACC__UUAGUCAC___UACG_UACCG\n3'-UUU...AUACA___UU________CGU____U_____GGUUG...UUG-5'\n_____________|__________________________|\n_____________67_________________________40\n |
213 -- 219 |
54 -- 60 |
-21.2123 kcal/mol |
4.76037 kcal/mol |
5.82355 kcal/mol |
207 229@LB@ | |@LB@5'-GUG...GUCUG U GUCAG...UUU-3'@LB@ UGG AAUUAGUG AUGC AUGGC@LB@ ||| |||:|||| |||| |||||@LB@ ACC UUAGUCAC UACG UACCG@LB@3'-UUU...AUACA UU CGU U GGUUG...UUG-5'@LB@ | |@LB@ 67 40@LB@@LB@@LB@Energy -10.63 kcal/mol@LB@Hybridization Energy -21.2123 kcal/mol@LB@Unfolding Energy - mRNA 4.76037 kcal/mol@LB@Unfolding Energy - sRNA 5.82355 kcal/mol@LB@@LB@Position - mRNA 208 -- 228@LB@Position - sRNA 41 -- 66@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 54 -- 60@LB@ |
125 |
0.01291 |
0.3474 |
b3006 |
exbB |
-11.08 |
0.071576 |
189 -- 220 |
46 -- 66 |
membrane spanning protein in TonB-ExbB-ExbD complex |
|
_____________188______________________________221\n_____________|________________________________|\n5'-CGC...CGUCC______UACA______GUAAUAAUU_______GACGG...CCU-3'\n______________UGGAGA____CAGUGG_________UAAUGCA\n______________||||:|____||||||_________:||||||\n______________ACCUUU____GUCACC_________GUUACGU\n3'-UUU...AUACA______UA________________________UACCG...UUG-5'\n_____________|________________________________|\n_____________67_______________________________45\n |
214 -- 220 |
46 -- 52 |
-19.4381 kcal/mol |
4.26886 kcal/mol |
4.08842 kcal/mol |
188 221@LB@ | |@LB@5'-CGC...CGUCC UACA GUAAUAAUU GACGG...CCU-3'@LB@ UGGAGA CAGUGG UAAUGCA@LB@ ||||:| |||||| :||||||@LB@ ACCUUU GUCACC GUUACGU@LB@3'-UUU...AUACA UA UACCG...UUG-5'@LB@ | |@LB@ 67 45@LB@@LB@@LB@Energy -11.08 kcal/mol@LB@Hybridization Energy -19.4381 kcal/mol@LB@Unfolding Energy - mRNA 4.26886 kcal/mol@LB@Unfolding Energy - sRNA 4.08842 kcal/mol@LB@@LB@Position - mRNA 189 -- 220@LB@Position - sRNA 46 -- 66@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 46 -- 52@LB@ |
126 |
0.01341 |
0.3578 |
b3572 |
avtA |
-7.69 |
0.327921 |
259 -- 267 |
58 -- 66 |
valine-pyruvate aminotransferase; transaminase C; alanine-valine transaminase |
|
_____________258_______268\n_____________|_________|\n5'-UCG...GUUGA_________UGAAC...UUA-3'\n______________UGGAAGAUC\n______________|||||:|||\n______________ACCUUUUAG\n3'-UUU...AUACA_________UCACC...UUG-5'\n_____________|_________|\n_____________67________57\n |
261 -- 267 |
58 -- 64 |
-10.9576 kcal/mol |
2.42155 kcal/mol |
0.843879 kcal/mol |
258 268@LB@ | |@LB@5'-UCG...GUUGA UGAAC...UUA-3'@LB@ UGGAAGAUC@LB@ |||||:|||@LB@ ACCUUUUAG@LB@3'-UUU...AUACA UCACC...UUG-5'@LB@ | |@LB@ 67 57@LB@@LB@@LB@Energy -7.69 kcal/mol@LB@Hybridization Energy -10.9576 kcal/mol@LB@Unfolding Energy - mRNA 2.42155 kcal/mol@LB@Unfolding Energy - sRNA 0.843879 kcal/mol@LB@@LB@Position - mRNA 259 -- 267@LB@Position - sRNA 58 -- 66@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 58 -- 64@LB@ |
127 |
0.01373 |
0.3614 |
b0463 |
acrA |
-13.78 |
0.016343 |
252 -- 289 |
8 -- 54 |
multidrug efflux system |
|
_____________251________________________________________________290\n_____________|__________________________________________________|\n5'-GCC...UCUCA________UUA_____U________________________C__AC____CCAAC...GUG-3'\n______________GGCA__GC____GCCC_AACAGGA_________UGUGACGA_AA__AGGC\n______________||||__||____||||_|||||:|_________||||||:|_||__||||\n______________CCGU__CG____CGGG_UUGUCUU_________ACACUGUU_UU__UCCG\n3'-UUU...AGUCA____UA__UUAC____________UUAUUUUAG________A________UAUAUUG-5'\n_____________|__________________________________________________|\n_____________55_________________________________________________7\n |
274 -- 280 |
15 -- 21 |
-34.7713 kcal/mol |
8.97181 kcal/mol |
12.019 kcal/mol |
251 290@LB@ | |@LB@5'-GCC...UCUCA UUA U C AC CCAAC...GUG-3'@LB@ GGCA GC GCCC AACAGGA UGUGACGA AA AGGC@LB@ |||| || |||| |||||:| ||||||:| || ||||@LB@ CCGU CG CGGG UUGUCUU ACACUGUU UU UCCG@LB@3'-UUU...AGUCA UA UUAC UUAUUUUAG A UAUAUUG-5'@LB@ | |@LB@ 55 7@LB@@LB@@LB@Energy -13.78 kcal/mol@LB@Hybridization Energy -34.7713 kcal/mol@LB@Unfolding Energy - mRNA 8.97181 kcal/mol@LB@Unfolding Energy - sRNA 12.019 kcal/mol@LB@@LB@Position - mRNA 252 -- 289@LB@Position - sRNA 8 -- 54@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 15 -- 21@LB@ |
128 |
0.01375 |
0.3614 |
b1271 |
yciK |
-9.18 |
0.177475 |
2 -- 35 |
4 -- 52 |
putative EmrKY-TolC system oxoacyl-(acyl carrier protein) reductase |
|
_____________1_________________________________________________36\n_____________|_________________________________________________|\n__________5'-A___C__UU___________UUU________________C__________UAAGC...CAC-3'\n______________CAA_GC__UGGCUC_ACAG_______________ACAA___AGGCAUGU\n______________|||_||__||||:|_||||_______________||||___||||||:|\n______________GUU_CG__ACCGGG_UGUC_______________UGUU___UCCGUAUA\n3'-UUU...UCACC___A__UU______U____UUUUAUUUUAGACAC____AUU________UUG-5'\n_____________|_________________________________________________|\n_____________53________________________________________________3\n |
29 -- 35 |
4 -- 10 |
-28.8633 kcal/mol |
7.6461 kcal/mol |
12.0385 kcal/mol |
1 36@LB@ | |@LB@ 5'-A C UU UUU C UAAGC...CAC-3'@LB@ CAA GC UGGCUC ACAG ACAA AGGCAUGU@LB@ ||| || ||||:| |||| |||| ||||||:|@LB@ GUU CG ACCGGG UGUC UGUU UCCGUAUA@LB@3'-UUU...UCACC A UU U UUUUAUUUUAGACAC AUU UUG-5'@LB@ | |@LB@ 53 3@LB@@LB@@LB@Energy -9.18 kcal/mol@LB@Hybridization Energy -28.8633 kcal/mol@LB@Unfolding Energy - mRNA 7.6461 kcal/mol@LB@Unfolding Energy - sRNA 12.0385 kcal/mol@LB@@LB@Position - mRNA 2 -- 35@LB@Position - sRNA 4 -- 52@LB@Position Seed - mRNA 29 -- 35@LB@Position Seed - sRNA 4 -- 10@LB@ |
129 |
0.01395 |
0.3636 |
b2314 |
dedD |
-15.05 |
0.007607 |
192 -- 211 |
45 -- 65 |
membrane-anchored periplasmic protein involved in septation |
|
_____________191___________________212\n_____________|_____________________|\n5'-UUG...CGCGA______G______________GUUUC...AUU-3'\n______________GGAGAA_CGGUGGCAA_GUAA\n______________|||:||_|:|||||||_|:||\n______________CCUUUU_GUCACCGUU_CGUU\n3'-UUU...UACAA______A_________A____ACCGG...UUG-5'\n_____________|_____________________|\n_____________66____________________44\n |
201 -- 207 |
50 -- 56 |
-23.8601 kcal/mol |
4.54883 kcal/mol |
4.26469 kcal/mol |
191 212@LB@ | |@LB@5'-UUG...CGCGA G GUUUC...AUU-3'@LB@ GGAGAA CGGUGGCAA GUAA@LB@ |||:|| |:||||||| |:||@LB@ CCUUUU GUCACCGUU CGUU@LB@3'-UUU...UACAA A A ACCGG...UUG-5'@LB@ | |@LB@ 66 44@LB@@LB@@LB@Energy -15.05 kcal/mol@LB@Hybridization Energy -23.8601 kcal/mol@LB@Unfolding Energy - mRNA 4.54883 kcal/mol@LB@Unfolding Energy - sRNA 4.26469 kcal/mol@LB@@LB@Position - mRNA 192 -- 211@LB@Position - sRNA 45 -- 65@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 50 -- 56@LB@ |
130 |
0.01417 |
0.3654 |
b3188 |
sfsB |
-12.77 |
0.029182 |
125 -- 158 |
30 -- 65 |
malPQ operon transcriptional activator |
|
_____________124__________________________________159\n_____________|____________________________________|\n5'-CGG...CAAUA__CC______GA___UA___________________AGUGU...UGA-3'\n______________GG___AUCAG__GUA__GUGAU_GCUCGACAGAAGA\n______________||___|||||__|:|__|::||_||:|:||||||:|\n______________CC___UAGUC__CGU__CGUUA_CGGGUUGUCUUUU\n3'-UUU...UACAA__UUU_____AC___UA_____C_____________AUUUU...UUG-5'\n_____________|____________________________________|\n_____________66___________________________________29\n |
152 -- 158 |
30 -- 36 |
-32.1455 kcal/mol |
8.39464 kcal/mol |
10.9856 kcal/mol |
124 159@LB@ | |@LB@5'-CGG...CAAUA CC GA UA AGUGU...UGA-3'@LB@ GG AUCAG GUA GUGAU GCUCGACAGAAGA@LB@ || ||||| |:| |::|| ||:|:||||||:|@LB@ CC UAGUC CGU CGUUA CGGGUUGUCUUUU@LB@3'-UUU...UACAA UUU AC UA C AUUUU...UUG-5'@LB@ | |@LB@ 66 29@LB@@LB@@LB@Energy -12.77 kcal/mol@LB@Hybridization Energy -32.1455 kcal/mol@LB@Unfolding Energy - mRNA 8.39464 kcal/mol@LB@Unfolding Energy - sRNA 10.9856 kcal/mol@LB@@LB@Position - mRNA 125 -- 158@LB@Position - sRNA 30 -- 65@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 30 -- 36@LB@ |
131 |
0.01428 |
0.3654 |
b2099 |
yegU |
-10.27 |
0.106798 |
246 -- 258 |
42 -- 54 |
ADP-ribosylglycohydrolase family protein |
|
_____________245___________259\n_____________|_____________|\n5'-GUG...CGUUA__G__________GGAUG...CAC-3'\n______________GG_GAUGCGAUGG\n______________||_:||||:||||\n______________CC_UUACGUUACC\n3'-UUU...AGUCA__G__________GGGUU...UUG-5'\n_____________|_____________|\n_____________55____________41\n |
252 -- 258 |
42 -- 48 |
-19.8763 kcal/mol |
6.10373 kcal/mol |
3.49932 kcal/mol |
245 259@LB@ | |@LB@5'-GUG...CGUUA G GGAUG...CAC-3'@LB@ GG GAUGCGAUGG@LB@ || :||||:||||@LB@ CC UUACGUUACC@LB@3'-UUU...AGUCA G GGGUU...UUG-5'@LB@ | |@LB@ 55 41@LB@@LB@@LB@Energy -10.27 kcal/mol@LB@Hybridization Energy -19.8763 kcal/mol@LB@Unfolding Energy - mRNA 6.10373 kcal/mol@LB@Unfolding Energy - sRNA 3.49932 kcal/mol@LB@@LB@Position - mRNA 246 -- 258@LB@Position - sRNA 42 -- 54@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 42 -- 48@LB@ |
132 |
0.0144 |
0.3654 |
b2381 |
ypdB |
-7.98 |
0.293473 |
18 -- 39 |
11 -- 32 |
response regulator activating yhjX; pyruvate-responsive YpdAB two-component system |
|
_____________17_____________________40\n_____________|______________________|\n5'-AUU...GAAGC_________GCCG_________AUUGG...ACG-3'\n______________GAAUGAAAU____GGCAAUAAA\n______________:|||:||||____|:|||||||\n______________UUUAUUUUA____CUGUUAUUU\n3'-UUU...UGUCU_________GACA_________CCGUA...UUG-5'\n_____________|______________________|\n_____________33_____________________10\n |
33 -- 39 |
11 -- 17 |
-14.9693 kcal/mol |
2.07375 kcal/mol |
4.91579 kcal/mol |
17 40@LB@ | |@LB@5'-AUU...GAAGC GCCG AUUGG...ACG-3'@LB@ GAAUGAAAU GGCAAUAAA@LB@ :|||:|||| |:|||||||@LB@ UUUAUUUUA CUGUUAUUU@LB@3'-UUU...UGUCU GACA CCGUA...UUG-5'@LB@ | |@LB@ 33 10@LB@@LB@@LB@Energy -7.98 kcal/mol@LB@Hybridization Energy -14.9693 kcal/mol@LB@Unfolding Energy - mRNA 2.07375 kcal/mol@LB@Unfolding Energy - sRNA 4.91579 kcal/mol@LB@@LB@Position - mRNA 18 -- 39@LB@Position - sRNA 11 -- 32@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 11 -- 17@LB@ |
133 |
0.01445 |
0.3654 |
b1260 |
trpA |
-8.36 |
0.252100 |
71 -- 77 |
38 -- 44 |
tryptophan synthase alpha subunit |
|
_____________70______78\n_____________|_______|\n5'-GCC...CGCCC_______UGCGU...CAU-3'\n______________UGGCCCA\n______________|||||||\n______________ACCGGGU\n3'-UUU...ACGUU_______UGUCU...UUG-5'\n_____________|_______|\n_____________45______37\n |
71 -- 77 |
38 -- 44 |
-13.3519 kcal/mol |
1.05946 kcal/mol |
3.93445 kcal/mol |
70 78@LB@ | |@LB@5'-GCC...CGCCC UGCGU...CAU-3'@LB@ UGGCCCA@LB@ |||||||@LB@ ACCGGGU@LB@3'-UUU...ACGUU UGUCU...UUG-5'@LB@ | |@LB@ 45 37@LB@@LB@@LB@Energy -8.36 kcal/mol@LB@Hybridization Energy -13.3519 kcal/mol@LB@Unfolding Energy - mRNA 1.05946 kcal/mol@LB@Unfolding Energy - sRNA 3.93445 kcal/mol@LB@@LB@Position - mRNA 71 -- 77@LB@Position - sRNA 38 -- 44@LB@Position Seed - mRNA 71 -- 77@LB@Position Seed - sRNA 38 -- 44@LB@ |
134 |
0.01498 |
0.3759 |
b3388 |
damX |
-9.22 |
0.174550 |
186 -- 204 |
42 -- 59 |
cell division protein that binds to the septal ring |
|
_____________185__________________205\n_____________|____________________|\n5'-GGG...ACCUU_____________UA_____AUGAA...AAC-3'\n______________UUAGUGG_GGUGU__AAUGG\n______________|:|||||_::||:__|||||\n______________AGUCACC_UUACG__UUACC\n3'-UUU...CUUUU_______G____________GGGUU...UUG-5'\n_____________|____________________|\n_____________60___________________41\n |
186 -- 192 |
53 -- 59 |
-16.4488 kcal/mol |
3.53707 kcal/mol |
3.69565 kcal/mol |
185 205@LB@ | |@LB@5'-GGG...ACCUU UA AUGAA...AAC-3'@LB@ UUAGUGG GGUGU AAUGG@LB@ |:||||| ::||: |||||@LB@ AGUCACC UUACG UUACC@LB@3'-UUU...CUUUU G GGGUU...UUG-5'@LB@ | |@LB@ 60 41@LB@@LB@@LB@Energy -9.22 kcal/mol@LB@Hybridization Energy -16.4488 kcal/mol@LB@Unfolding Energy - mRNA 3.53707 kcal/mol@LB@Unfolding Energy - sRNA 3.69565 kcal/mol@LB@@LB@Position - mRNA 186 -- 204@LB@Position - sRNA 42 -- 59@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 53 -- 59@LB@ |
135 |
0.01531 |
0.3774 |
b3224 |
nanT |
-10.34 |
0.103537 |
56 -- 77 |
28 -- 54 |
sialic acid transporter |
|
_____________55__________________________78\n_____________|___________________________|\n5'-CGC...CUGAA_____________________UU____CAAGA...GUU-3'\n______________GGC___GC__UGGCCCAGCAG__GAUG\n______________|||___||__|||||||:|||__:||:\n______________CCG___CG__ACCGGGUUGUC__UUAU\n3'-UUU...AGUCA___UUA__UU___________UU____UUUAG...UUG-5'\n_____________|___________________________|\n_____________55__________________________27\n |
63 -- 69 |
36 -- 42 |
-28.0045 kcal/mol |
8.68418 kcal/mol |
8.98285 kcal/mol |
55 78@LB@ | |@LB@5'-CGC...CUGAA UU CAAGA...GUU-3'@LB@ GGC GC UGGCCCAGCAG GAUG@LB@ ||| || |||||||:||| :||:@LB@ CCG CG ACCGGGUUGUC UUAU@LB@3'-UUU...AGUCA UUA UU UU UUUAG...UUG-5'@LB@ | |@LB@ 55 27@LB@@LB@@LB@Energy -10.34 kcal/mol@LB@Hybridization Energy -28.0045 kcal/mol@LB@Unfolding Energy - mRNA 8.68418 kcal/mol@LB@Unfolding Energy - sRNA 8.98285 kcal/mol@LB@@LB@Position - mRNA 56 -- 77@LB@Position - sRNA 28 -- 54@LB@Position Seed - mRNA 63 -- 69@LB@Position Seed - sRNA 36 -- 42@LB@ |
136 |
0.01532 |
0.3774 |
b3054 |
ygiF |
-8.05 |
0.285135 |
192 -- 208 |
38 -- 53 |
inorganic triphosphatase |
|
_____________191_______________209\n_____________|_________________|\n5'-GGC...GAUAA____AG__C________GGAAA...CCG-3'\n______________GUAA__GC_AUGGCUCA\n______________|:||__||_|||||:||\n______________CGUU__CG_UACCGGGU\n3'-UUU...GUCAC____A___U________UGUCU...UUG-5'\n_____________|_________________|\n_____________54________________37\n |
202 -- 208 |
38 -- 44 |
-16.8567 kcal/mol |
4.04422 kcal/mol |
4.7597 kcal/mol |
191 209@LB@ | |@LB@5'-GGC...GAUAA AG C GGAAA...CCG-3'@LB@ GUAA GC AUGGCUCA@LB@ |:|| || |||||:||@LB@ CGUU CG UACCGGGU@LB@3'-UUU...GUCAC A U UGUCU...UUG-5'@LB@ | |@LB@ 54 37@LB@@LB@@LB@Energy -8.05 kcal/mol@LB@Hybridization Energy -16.8567 kcal/mol@LB@Unfolding Energy - mRNA 4.04422 kcal/mol@LB@Unfolding Energy - sRNA 4.7597 kcal/mol@LB@@LB@Position - mRNA 192 -- 208@LB@Position - sRNA 38 -- 53@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 38 -- 44@LB@ |
137 |
0.01537 |
0.3774 |
b0952 |
pqiC |
-8.31 |
0.257066 |
203 -- 237 |
17 -- 64 |
DUF330 family putative lipoprotein |
|
_____________202________________________________________________238\n_____________|__________________________________________________|\n5'-ACG...ACAAU_____________U____A_______G_______________________UGGCC...GCG-3'\n______________GAAAA__AGUGGC_AGUG_CGAU__U_CAGCA___________CUGUGGC\n______________|||||__||||||_|:||_|:||__:_||:||___________|||||:|\n______________CUUUU__UCACCG_UUAC_GUUA__G_GUUGU___________GACACUG\n3'-UUU...ACAAC_____AG________________CC_G_____CUUUUAUUUUA_______UUAUU...UUG-5'\n_____________|__________________________________________________|\n_____________65_________________________________________________16\n |
231 -- 237 |
17 -- 23 |
-29.1693 kcal/mol |
9.7543 kcal/mol |
11.1047 kcal/mol |
202 238@LB@ | |@LB@5'-ACG...ACAAU U A G UGGCC...GCG-3'@LB@ GAAAA AGUGGC AGUG CGAU U CAGCA CUGUGGC@LB@ ||||| |||||| |:|| |:|| : ||:|| |||||:|@LB@ CUUUU UCACCG UUAC GUUA G GUUGU GACACUG@LB@3'-UUU...ACAAC AG CC G CUUUUAUUUUA UUAUU...UUG-5'@LB@ | |@LB@ 65 16@LB@@LB@@LB@Energy -8.31 kcal/mol@LB@Hybridization Energy -29.1693 kcal/mol@LB@Unfolding Energy - mRNA 9.7543 kcal/mol@LB@Unfolding Energy - sRNA 11.1047 kcal/mol@LB@@LB@Position - mRNA 203 -- 237@LB@Position - sRNA 17 -- 64@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 17 -- 23@LB@ |
138 |
0.01562 |
0.3807 |
b1735 |
chbR |
-9.56 |
0.149643 |
62 -- 73 |
41 -- 54 |
repressor of chb operon for N N'-diacetylchitobiose utilization |
|
_____________61_____________74\n_____________|______________|\n5'-GAU...UUGAA______________GAAGG...CUG-3'\n______________GGCGAUGCG__GGC\n______________|||:||||:__|||\n______________CCGUUACGU__CCG\n3'-UUU...AGUCA_________UA___GGUUG...UUG-5'\n_____________|______________|\n_____________55_____________40\n |
64 -- 70 |
46 -- 52 |
-18.6965 kcal/mol |
5.24959 kcal/mol |
3.89026 kcal/mol |
61 74@LB@ | |@LB@5'-GAU...UUGAA GAAGG...CUG-3'@LB@ GGCGAUGCG GGC@LB@ |||:||||: |||@LB@ CCGUUACGU CCG@LB@3'-UUU...AGUCA UA GGUUG...UUG-5'@LB@ | |@LB@ 55 40@LB@@LB@@LB@Energy -9.56 kcal/mol@LB@Hybridization Energy -18.6965 kcal/mol@LB@Unfolding Energy - mRNA 5.24959 kcal/mol@LB@Unfolding Energy - sRNA 3.89026 kcal/mol@LB@@LB@Position - mRNA 62 -- 73@LB@Position - sRNA 41 -- 54@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 46 -- 52@LB@ |
139 |
0.0159 |
0.3828 |
b2108 |
yehA |
-9.84 |
0.131393 |
50 -- 60 |
55 -- 65 |
putative fimbrial-like adhesin protein |
|
_____________49__________61\n_____________|___________|\n5'-GUU...GGCCA___________UAUUU...UUG-3'\n______________GGGAAGUCAGU\n______________||:||:|||||\n______________CCUUUUAGUCA\n3'-UUU...UACAA___________CCGUU...UUG-5'\n_____________|___________|\n_____________66__________54\n |
54 -- 60 |
55 -- 61 |
-13.8721 kcal/mol |
3.08221 kcal/mol |
0.952476 kcal/mol |
49 61@LB@ | |@LB@5'-GUU...GGCCA UAUUU...UUG-3'@LB@ GGGAAGUCAGU@LB@ ||:||:|||||@LB@ CCUUUUAGUCA@LB@3'-UUU...UACAA CCGUU...UUG-5'@LB@ | |@LB@ 66 54@LB@@LB@@LB@Energy -9.84 kcal/mol@LB@Hybridization Energy -13.8721 kcal/mol@LB@Unfolding Energy - mRNA 3.08221 kcal/mol@LB@Unfolding Energy - sRNA 0.952476 kcal/mol@LB@@LB@Position - mRNA 50 -- 60@LB@Position - sRNA 55 -- 65@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 55 -- 61@LB@ |
140 |
0.01599 |
0.3828 |
b0119 |
yacL |
-11.32 |
0.063485 |
266 -- 299 |
25 -- 57 |
UPF0231 family protein |
|
_____________265_________________________________300\n_____________|___________________________________|\n5'-GGU...CAUGA______CGG___C_________GA___________G-3'\n______________AGUGGU___GCA_UGGUUUAAU__AGA_GGUGAAA\n______________|||||:___|||_|||:::||:__|||_::|:|||\n______________UCACCG___CGU_ACCGGGUUG__UCU_UUAUUUU\n3'-UUU...UUUAG______UUA___U______________U_______AGACA...UUG-5'\n_____________|___________________________________|\n_____________58__________________________________24\n |
293 -- 299 |
25 -- 31 |
-25.5028 kcal/mol |
4.248 kcal/mol |
9.93955 kcal/mol |
265 300@LB@ | |@LB@5'-GGU...CAUGA CGG C GA G-3'@LB@ AGUGGU GCA UGGUUUAAU AGA GGUGAAA@LB@ |||||: ||| |||:::||: ||| ::|:|||@LB@ UCACCG CGU ACCGGGUUG UCU UUAUUUU@LB@3'-UUU...UUUAG UUA U U AGACA...UUG-5'@LB@ | |@LB@ 58 24@LB@@LB@@LB@Energy -11.32 kcal/mol@LB@Hybridization Energy -25.5028 kcal/mol@LB@Unfolding Energy - mRNA 4.248 kcal/mol@LB@Unfolding Energy - sRNA 9.93955 kcal/mol@LB@@LB@Position - mRNA 266 -- 299@LB@Position - sRNA 25 -- 57@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 25 -- 31@LB@ |
143 |
0.01651 |
0.3828 |
b2793 |
syd |
-11.91 |
0.046390 |
192 -- 225 |
39 -- 65 |
SecY-interacting protein |
|
_____________191________________________________226\n_____________|__________________________________|\n5'-UCA...GAAGA_A___________A____UUGACC___CAA____UGAAA...UGU-3'\n______________G_GAAAUUAGUGG_CGAU______GCA___GCCC\n______________|_:||||:|||||_|:||______|||___||||\n______________C_UUUUAGUCACC_GUUA______CGU___CGGG\n3'-UUU...UACAA_C_________________________UAC____UUGUC...UUG-5'\n_____________|__________________________________|\n_____________66_________________________________38\n |
198 -- 204 |
53 -- 59 |
-24.7129 kcal/mol |
6.12952 kcal/mol |
6.66922 kcal/mol |
191 226@LB@ | |@LB@5'-UCA...GAAGA A A UUGACC CAA UGAAA...UGU-3'@LB@ G GAAAUUAGUGG CGAU GCA GCCC@LB@ | :||||:||||| |:|| ||| ||||@LB@ C UUUUAGUCACC GUUA CGU CGGG@LB@3'-UUU...UACAA C UAC UUGUC...UUG-5'@LB@ | |@LB@ 66 38@LB@@LB@@LB@Energy -11.91 kcal/mol@LB@Hybridization Energy -24.7129 kcal/mol@LB@Unfolding Energy - mRNA 6.12952 kcal/mol@LB@Unfolding Energy - sRNA 6.66922 kcal/mol@LB@@LB@Position - mRNA 192 -- 225@LB@Position - sRNA 39 -- 65@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 53 -- 59@LB@ |
144 |
0.01658 |
0.3828 |
b3731 |
atpC |
-9.12 |
0.181998 |
70 -- 89 |
6 -- 25 |
F1 sector of membrane-bound ATP synthase epsilon subunit |
|
_____________69___________________90\n_____________|____________________|\n5'-UCC...ACACC___C_____UU_________CAUGG...UGG-3'\n______________AUC_GUGGC__UAAAGGCAU\n______________|||_|||:|__|||||||||\n______________UAG_CACUG__AUUUCCGUA\n3'-UUU...UAUUU___A_____UU_________UAUUG-5'\n_____________|____________________|\n_____________26___________________5\n |
83 -- 89 |
6 -- 12 |
-21.8685 kcal/mol |
8.00712 kcal/mol |
4.73944 kcal/mol |
69 90@LB@ | |@LB@5'-UCC...ACACC C UU CAUGG...UGG-3'@LB@ AUC GUGGC UAAAGGCAU@LB@ ||| |||:| |||||||||@LB@ UAG CACUG AUUUCCGUA@LB@3'-UUU...UAUUU A UU UAUUG-5'@LB@ | |@LB@ 26 5@LB@@LB@@LB@Energy -9.12 kcal/mol@LB@Hybridization Energy -21.8685 kcal/mol@LB@Unfolding Energy - mRNA 8.00712 kcal/mol@LB@Unfolding Energy - sRNA 4.73944 kcal/mol@LB@@LB@Position - mRNA 70 -- 89@LB@Position - sRNA 6 -- 25@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 6 -- 12@LB@ |
145 |
0.01667 |
0.3828 |
b1835 |
rsmF |
-17.85 |
0.001164 |
186 -- 211 |
35 -- 58 |
16S rRNA m(5)C1407 methyltransferase SAM-dependent |
|
_____________185________________________212\n_____________|__________________________|\n5'-CGC...UUUGC________C____UC___________CACCG...GUC-3'\n______________CAGUGGUA_AUGC__GUGGCCCAACA\n______________||||||:|_||||__:||||||||||\n______________GUCACCGU_UACG__UACCGGGUUGU\n3'-UUU...UUUUA_____________U____________CUUUU...UUG-5'\n_____________|__________________________|\n_____________59_________________________34\n |
205 -- 211 |
35 -- 41 |
-37.9392 kcal/mol |
9.33395 kcal/mol |
10.7541 kcal/mol |
185 212@LB@ | |@LB@5'-CGC...UUUGC C UC CACCG...GUC-3'@LB@ CAGUGGUA AUGC GUGGCCCAACA@LB@ ||||||:| |||| :||||||||||@LB@ GUCACCGU UACG UACCGGGUUGU@LB@3'-UUU...UUUUA U CUUUU...UUG-5'@LB@ | |@LB@ 59 34@LB@@LB@@LB@Energy -17.85 kcal/mol@LB@Hybridization Energy -37.9392 kcal/mol@LB@Unfolding Energy - mRNA 9.33395 kcal/mol@LB@Unfolding Energy - sRNA 10.7541 kcal/mol@LB@@LB@Position - mRNA 186 -- 211@LB@Position - sRNA 35 -- 58@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 35 -- 41@LB@ |
146 |
0.01679 |
0.3828 |
b2699 |
recA |
-5.90 |
0.590167 |
190 -- 206 |
40 -- 58 |
DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
|
_____________189_________________207\n_____________|___________________|\n5'-UGC...CAUGA___GA____A_________AUCGA...ACC-3'\n______________CAG__GUAA___AAUGGCU\n______________|||__|:||___||||||:\n______________GUC__CGUU___UUACCGG\n3'-UUU...UUUUA___AC____ACG_______GUUGU...UUG-5'\n_____________|___________________|\n_____________59__________________39\n |
200 -- 206 |
40 -- 46 |
-15.424 kcal/mol |
3.45581 kcal/mol |
6.06808 kcal/mol |
189 207@LB@ | |@LB@5'-UGC...CAUGA GA A AUCGA...ACC-3'@LB@ CAG GUAA AAUGGCU@LB@ ||| |:|| ||||||:@LB@ GUC CGUU UUACCGG@LB@3'-UUU...UUUUA AC ACG GUUGU...UUG-5'@LB@ | |@LB@ 59 39@LB@@LB@@LB@Energy -5.90 kcal/mol@LB@Hybridization Energy -15.424 kcal/mol@LB@Unfolding Energy - mRNA 3.45581 kcal/mol@LB@Unfolding Energy - sRNA 6.06808 kcal/mol@LB@@LB@Position - mRNA 190 -- 206@LB@Position - sRNA 40 -- 58@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 40 -- 46@LB@ |
147 |
0.01713 |
0.3828 |
b3354 |
yheU |
-14.93 |
0.008191 |
201 -- 276 |
7 -- 70 |
UPF0270 family protein |
|
_____________200_____________________________________________________________________________277\n_____________|_______________________________________________________________________________|\n5'-CUG...AAAUC______AU_____C_______GACCUCUCC_____AACGC________UU____GAAAGCUU____UUAC_________CCGAU...GUA-3'\n______________AUGUUG_____UC_GUGGCAA_________CCCGA_____UGGAAAAU__AAUU________UGUG____GUGAAGGCA\n______________||||||_____||_|||||||_________|||:|_____::||||||__|||:________||||____:|:||||||\n______________UACAAC_____AG_CACCGUU_________GGGUU_____GUCUUUUA__UUAG________ACAC____UAUUUCCGU\n3'-UUU...AAAUA______CUUUU__U_______ACGUUACC___________________UU________________UGU__________AUAUUG-5'\n_____________|_______________________________________________________________________________|\n_____________71______________________________________________________________________________6\n |
270 -- 276 |
7 -- 13 |
-40.9535 kcal/mol |
13.8654 kcal/mol |
12.1606 kcal/mol |
200 277@LB@ | |@LB@5'-CUG...AAAUC AU C GACCUCUCC AACGC UU GAAAGCUU UUAC CCGAU...GUA-3'@LB@ AUGUUG UC GUGGCAA CCCGA UGGAAAAU AAUU UGUG GUGAAGGCA@LB@ |||||| || ||||||| |||:| ::|||||| |||: |||| :|:||||||@LB@ UACAAC AG CACCGUU GGGUU GUCUUUUA UUAG ACAC UAUUUCCGU@LB@3'-UUU...AAAUA CUUUU U ACGUUACC UU UGU AUAUUG-5'@LB@ | |@LB@ 71 6@LB@@LB@@LB@Energy -14.93 kcal/mol@LB@Hybridization Energy -40.9535 kcal/mol@LB@Unfolding Energy - mRNA 13.8654 kcal/mol@LB@Unfolding Energy - sRNA 12.1606 kcal/mol@LB@@LB@Position - mRNA 201 -- 276@LB@Position - sRNA 7 -- 70@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 7 -- 13@LB@ |
148 |
0.01733 |
0.3828 |
b1760 |
ynjH |
-7.42 |
0.362448 |
2 -- 64 |
11 -- 71 |
DUF1496 family protein |
|
_____________1________________________________________________________________65\n_____________|________________________________________________________________|\n__________5'-U_______UUUAU____U___CUUU______U_______UAUACCAUCAAGAA____________CAAGA...AAG-3'\n______________UAUGUUG_____GUCA_GUG____UGCAGU__UUCGAC______________UGUGACGGUAAG\n______________|||||||_____:|||_|||____||||:|__::|:||______________||||||::|||:\n______________AUACAAC_____UAGU_CAC____ACGUUA__GGGUUG______________ACACUGUUAUUU\n3'-UUU...AAAAU_______CUUU_________CGUU______CC______UCUUUUAUUUUAG_____________CCGUA...UUG-5'\n_____________|________________________________________________________________|\n_____________72_______________________________________________________________10\n |
58 -- 64 |
11 -- 17 |
-35.6179 kcal/mol |
16.0903 kcal/mol |
12.1045 kcal/mol |
1 65@LB@ | |@LB@ 5'-U UUUAU U CUUU U UAUACCAUCAAGAA CAAGA...AAG-3'@LB@ UAUGUUG GUCA GUG UGCAGU UUCGAC UGUGACGGUAAG@LB@ ||||||| :||| ||| ||||:| ::|:|| ||||||::|||:@LB@ AUACAAC UAGU CAC ACGUUA GGGUUG ACACUGUUAUUU@LB@3'-UUU...AAAAU CUUU CGUU CC UCUUUUAUUUUAG CCGUA...UUG-5'@LB@ | |@LB@ 72 10@LB@@LB@@LB@Energy -7.42 kcal/mol@LB@Hybridization Energy -35.6179 kcal/mol@LB@Unfolding Energy - mRNA 16.0903 kcal/mol@LB@Unfolding Energy - sRNA 12.1045 kcal/mol@LB@@LB@Position - mRNA 2 -- 64@LB@Position - sRNA 11 -- 71@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 11 -- 17@LB@ |
149 |
0.01777 |
0.3828 |
b3024 |
ygiW |
-12.90 |
0.027028 |
214 -- 237 |
39 -- 58 |
hydrogen peroxide and cadmium resistance periplasmic protein; stress-induced OB-fold protein |
|
_____________213______________________238\n_____________|________________________|\n5'-UGA...AUUCG___CA_____CGCA__________UGUGC...AAA-3'\n______________CAG__GUAAU____GUAAUGGCCC\n______________|||__|:|||____|:||||||||\n______________GUC__CGUUA____CGUUACCGGG\n3'-UUU...UUUUA___AC___________________UUGUC...UUG-5'\n_____________|________________________|\n_____________59_______________________38\n |
231 -- 237 |
39 -- 45 |
-23.1488 kcal/mol |
3.67833 kcal/mol |
6.56779 kcal/mol |
213 238@LB@ | |@LB@5'-UGA...AUUCG CA CGCA UGUGC...AAA-3'@LB@ CAG GUAAU GUAAUGGCCC@LB@ ||| |:||| |:||||||||@LB@ GUC CGUUA CGUUACCGGG@LB@3'-UUU...UUUUA AC UUGUC...UUG-5'@LB@ | |@LB@ 59 38@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -23.1488 kcal/mol@LB@Unfolding Energy - mRNA 3.67833 kcal/mol@LB@Unfolding Energy - sRNA 6.56779 kcal/mol@LB@@LB@Position - mRNA 214 -- 237@LB@Position - sRNA 39 -- 58@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 39 -- 45@LB@ |
150 |
0.01784 |
0.3828 |
b2412 |
zipA |
-13.80 |
0.016156 |
169 -- 198 |
28 -- 57 |
FtsZ stabilizer |
|
_____________168____________________________199\n_____________|______________________________|\n5'-CAG...GCCGU________G___UUA_AA____________UAAUG...CUU-3'\n______________GGUGGCAA_GUG___G__CAACAGAGAAUA\n______________:|||||||_|::___|__|||||||:||||\n______________UCACCGUU_CGU___C__GUUGUCUUUUAU\n3'-UUU...UUUAG________A___UAC_GG____________UUUAG...UUG-5'\n_____________|______________________________|\n_____________58_____________________________27\n |
189 -- 195 |
31 -- 37 |
-29.7049 kcal/mol |
6.01867 kcal/mol |
9.88595 kcal/mol |
168 199@LB@ | |@LB@5'-CAG...GCCGU G UUA AA UAAUG...CUU-3'@LB@ GGUGGCAA GUG G CAACAGAGAAUA@LB@ :||||||| |:: | |||||||:||||@LB@ UCACCGUU CGU C GUUGUCUUUUAU@LB@3'-UUU...UUUAG A UAC GG UUUAG...UUG-5'@LB@ | |@LB@ 58 27@LB@@LB@@LB@Energy -13.80 kcal/mol@LB@Hybridization Energy -29.7049 kcal/mol@LB@Unfolding Energy - mRNA 6.01867 kcal/mol@LB@Unfolding Energy - sRNA 9.88595 kcal/mol@LB@@LB@Position - mRNA 169 -- 198@LB@Position - sRNA 28 -- 57@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 31 -- 37@LB@ |
151 |
0.01786 |
0.3828 |
b0412 |
yajI |
-11.20 |
0.067280 |
41 -- 55 |
41 -- 54 |
putative lipoprotein |
|
_____________40______________56\n_____________|_______________|\n5'-CGA...GAAUG_________UAC___GUCCU...UCA-3'\n______________GGCAAUGCA___GGC\n______________|||||||||___|||\n______________CCGUUACGU___CCG\n3'-UUU...AGUCA_________UA____GGUUG...UUG-5'\n_____________|_______________|\n_____________55______________40\n |
43 -- 49 |
46 -- 52 |
-19.8433 kcal/mol |
4.75092 kcal/mol |
3.89026 kcal/mol |
40 56@LB@ | |@LB@5'-CGA...GAAUG UAC GUCCU...UCA-3'@LB@ GGCAAUGCA GGC@LB@ ||||||||| |||@LB@ CCGUUACGU CCG@LB@3'-UUU...AGUCA UA GGUUG...UUG-5'@LB@ | |@LB@ 55 40@LB@@LB@@LB@Energy -11.20 kcal/mol@LB@Hybridization Energy -19.8433 kcal/mol@LB@Unfolding Energy - mRNA 4.75092 kcal/mol@LB@Unfolding Energy - sRNA 3.89026 kcal/mol@LB@@LB@Position - mRNA 41 -- 55@LB@Position - sRNA 41 -- 54@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 46 -- 52@LB@ |
152 |
0.01787 |
0.3828 |
b1659 |
ydhB |
-7.85 |
0.308650 |
225 -- 251 |
41 -- 68 |
LysR family putative transcriptional regulator |
|
_____________224__________________________252\n_____________|____________________________|\n5'-CGA...UCGAA____UU__UG____A___C_________AGUUU...UCA-3'\n______________GUUG__GA__CGGU_GCG__GUAAUGGU\n______________||||__:|__|:||_||:__|:|||||:\n______________CAAC__UU__GUCA_CGU__CGUUACCG\n3'-UUU...AUAUA____CU__UA____C___UA________GGUUG...UUG-5'\n_____________|____________________________|\n_____________69___________________________40\n |
245 -- 251 |
41 -- 47 |
-21.9924 kcal/mol |
7.69552 kcal/mol |
6.44645 kcal/mol |
224 252@LB@ | |@LB@5'-CGA...UCGAA UU UG A C AGUUU...UCA-3'@LB@ GUUG GA CGGU GCG GUAAUGGU@LB@ |||| :| |:|| ||: |:|||||:@LB@ CAAC UU GUCA CGU CGUUACCG@LB@3'-UUU...AUAUA CU UA C UA GGUUG...UUG-5'@LB@ | |@LB@ 69 40@LB@@LB@@LB@Energy -7.85 kcal/mol@LB@Hybridization Energy -21.9924 kcal/mol@LB@Unfolding Energy - mRNA 7.69552 kcal/mol@LB@Unfolding Energy - sRNA 6.44645 kcal/mol@LB@@LB@Position - mRNA 225 -- 251@LB@Position - sRNA 41 -- 68@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 41 -- 47@LB@ |
154 |
0.01792 |
0.3828 |
b2610 |
ffh |
-8.53 |
0.234957 |
246 -- 258 |
48 -- 60 |
Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) |
|
_____________245___________259\n_____________|_____________|\n5'-AGG...GCAAU_________C___GACGC...AAG-3'\n______________AUCAGUGGC_GUG\n______________|||||||||_:||\n______________UAGUCACCG_UAC\n3'-UUU...CCUUU_________U___GUUAC...UUG-5'\n_____________|_____________|\n_____________61____________47\n |
248 -- 254 |
52 -- 58 |
-18.214 kcal/mol |
6.29175 kcal/mol |
3.39422 kcal/mol |
245 259@LB@ | |@LB@5'-AGG...GCAAU C GACGC...AAG-3'@LB@ AUCAGUGGC GUG@LB@ ||||||||| :||@LB@ UAGUCACCG UAC@LB@3'-UUU...CCUUU U GUUAC...UUG-5'@LB@ | |@LB@ 61 47@LB@@LB@@LB@Energy -8.53 kcal/mol@LB@Hybridization Energy -18.214 kcal/mol@LB@Unfolding Energy - mRNA 6.29175 kcal/mol@LB@Unfolding Energy - sRNA 3.39422 kcal/mol@LB@@LB@Position - mRNA 246 -- 258@LB@Position - sRNA 48 -- 60@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 52 -- 58@LB@ |
155 |
0.01799 |
0.3828 |
b1446 |
ydcY |
-7.41 |
0.363872 |
123 -- 175 |
11 -- 59 |
DUF2526 family protein |
|
_____________122______________________________________________________176\n_____________|________________________________________________________|\n5'-UAU...CUUAC___C____U___AC_____A___C_____CUU___UC_____GA___AU_______UUUCA...ACG-3'\n______________UCA_UGGC__UG____GGC_CCA_GCAGA___AUA__AUUUG__UGA__CGAUAAA\n______________|||_||||__||____|||_|||_:||||___|||__||:||__|||__|:|||||\n______________AGU_ACCG__AC____CCG_GGU_UGUCU___UAU__UAGAC__ACU__GUUAUUU\n3'-UUU...CUUUU___C____UU__GUUA_____________UU____UU___________________CCGUA...UUG-5'\n_____________|________________________________________________________|\n_____________60_______________________________________________________10\n |
169 -- 175 |
11 -- 17 |
-29.7235 kcal/mol |
11.188 kcal/mol |
11.1233 kcal/mol |
122 176@LB@ | |@LB@5'-UAU...CUUAC C U AC A C CUU UC GA AU UUUCA...ACG-3'@LB@ UCA UGGC UG GGC CCA GCAGA AUA AUUUG UGA CGAUAAA@LB@ ||| |||| || ||| ||| :|||| ||| ||:|| ||| |:|||||@LB@ AGU ACCG AC CCG GGU UGUCU UAU UAGAC ACU GUUAUUU@LB@3'-UUU...CUUUU C UU GUUA UU UU CCGUA...UUG-5'@LB@ | |@LB@ 60 10@LB@@LB@@LB@Energy -7.41 kcal/mol@LB@Hybridization Energy -29.7235 kcal/mol@LB@Unfolding Energy - mRNA 11.188 kcal/mol@LB@Unfolding Energy - sRNA 11.1233 kcal/mol@LB@@LB@Position - mRNA 123 -- 175@LB@Position - sRNA 11 -- 59@LB@Position Seed - mRNA 169 -- 175@LB@Position Seed - sRNA 11 -- 17@LB@ |
156 |
0.01801 |
0.3828 |
b1942 |
fliJ |
-11.30 |
0.063944 |
187 -- 254 |
7 -- 65 |
flagellar protein |
|
_____________186______________________________________________________________________255\n_____________|________________________________________________________________________|\n5'-UUC...ACCCA_____UAACGG___A_____GAACAUG_____C____GACCCU______________GCAGA__A_______GAGGA...AGC-3'\n______________GGAGA______CAG_UGGCA_______GUGCG_UGGC______GAAA____GAUCUG_____AA_AGAGGUA\n______________|||:|______|||_|||||_______:|||:_||||______||||____:|||||_____||_|:|||:|\n______________CCUUU______GUC_ACCGU_______UACGU_ACCG______CUUU____UUAGAC_____UU_UUUCCGU\n3'-UUU...UACAA_____UA_________________________U____GGUUGU____UAUU______ACUG___A_______AUAUUG-5'\n_____________|________________________________________________________________________|\n_____________66_______________________________________________________________________6\n |
248 -- 254 |
7 -- 13 |
-39.8056 kcal/mol |
16.3505 kcal/mol |
12.1538 kcal/mol |
186 255@LB@ | |@LB@5'-UUC...ACCCA UAACGG A GAACAUG C GACCCU GCAGA A GAGGA...AGC-3'@LB@ GGAGA CAG UGGCA GUGCG UGGC GAAA GAUCUG AA AGAGGUA@LB@ |||:| ||| ||||| :|||: |||| |||| :||||| || |:|||:|@LB@ CCUUU GUC ACCGU UACGU ACCG CUUU UUAGAC UU UUUCCGU@LB@3'-UUU...UACAA UA U GGUUGU UAUU ACUG A AUAUUG-5'@LB@ | |@LB@ 66 6@LB@@LB@@LB@Energy -11.30 kcal/mol@LB@Hybridization Energy -39.8056 kcal/mol@LB@Unfolding Energy - mRNA 16.3505 kcal/mol@LB@Unfolding Energy - sRNA 12.1538 kcal/mol@LB@@LB@Position - mRNA 187 -- 254@LB@Position - sRNA 7 -- 65@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 7 -- 13@LB@ |
157 |
0.01802 |
0.3828 |
b3693 |
dgoK |
-7.47 |
0.356536 |
125 -- 141 |
46 -- 60 |
2-oxo-3-deoxygalactonate kinase |
|
_____________124_______________142\n_____________|_________________|\n5'-CAG...ACGAC_____GAC_________GCAGA...CAG-3'\n______________AUCAG___GGCGAUGCG\n______________|||||___|||:||||:\n______________UAGUC___CCGUUACGU\n3'-UUU...CCUUU_____A___________UACCG...UUG-5'\n_____________|_________________|\n_____________61________________45\n |
134 -- 140 |
47 -- 53 |
-18.5317 kcal/mol |
7.63037 kcal/mol |
3.43341 kcal/mol |
124 142@LB@ | |@LB@5'-CAG...ACGAC GAC GCAGA...CAG-3'@LB@ AUCAG GGCGAUGCG@LB@ ||||| |||:||||:@LB@ UAGUC CCGUUACGU@LB@3'-UUU...CCUUU A UACCG...UUG-5'@LB@ | |@LB@ 61 45@LB@@LB@@LB@Energy -7.47 kcal/mol@LB@Hybridization Energy -18.5317 kcal/mol@LB@Unfolding Energy - mRNA 7.63037 kcal/mol@LB@Unfolding Energy - sRNA 3.43341 kcal/mol@LB@@LB@Position - mRNA 125 -- 141@LB@Position - sRNA 46 -- 60@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 47 -- 53@LB@ |
158 |
0.01805 |
0.3828 |
b0159 |
mtn |
-12.15 |
0.040782 |
203 -- 232 |
30 -- 64 |
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase |
|
_____________202_________________________________233\n_____________|___________________________________|\n5'-GAU...UCUAU______________U____U____G__________AGAAG...UCU-3'\n______________GAAAAUC___GGCA___CA_UGGU_CAAUGGAAGA\n______________|||||||___||||___||_|||:_|||::|||:|\n______________CUUUUAG___CCGU___GU_ACCG_GUUGUCUUUU\n3'-UUU...ACAAC_______UCA____UAC__U____G__________AUUUU...UUG-5'\n_____________|___________________________________|\n_____________65__________________________________29\n |
203 -- 209 |
58 -- 64 |
-29.7028 kcal/mol |
6.58654 kcal/mol |
10.9617 kcal/mol |
202 233@LB@ | |@LB@5'-GAU...UCUAU U U G AGAAG...UCU-3'@LB@ GAAAAUC GGCA CA UGGU CAAUGGAAGA@LB@ ||||||| |||| || |||: |||::|||:|@LB@ CUUUUAG CCGU GU ACCG GUUGUCUUUU@LB@3'-UUU...ACAAC UCA UAC U G AUUUU...UUG-5'@LB@ | |@LB@ 65 29@LB@@LB@@LB@Energy -12.15 kcal/mol@LB@Hybridization Energy -29.7028 kcal/mol@LB@Unfolding Energy - mRNA 6.58654 kcal/mol@LB@Unfolding Energy - sRNA 10.9617 kcal/mol@LB@@LB@Position - mRNA 203 -- 232@LB@Position - sRNA 30 -- 64@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 58 -- 64@LB@ |
159 |
0.01815 |
0.3828 |
b2418 |
pdxK |
-7.58 |
0.341503 |
51 -- 77 |
38 -- 65 |
pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase |
|
_____________50___________________________78\n_____________|____________________________|\n5'-CAU...AACGG____U____UUA___________A____GACAA...GCA-3'\n______________GGAG_GUCA___GUAGUGUAAUG__CCA\n______________|||:_:|||___|:|:||:||||__|||\n______________CCUU_UAGU___CGUUACGUUAC__GGU\n3'-UUU...UACAA____U____CAC___________CG___UGUCU...UUG-5'\n_____________|____________________________|\n_____________66___________________________37\n |
67 -- 73 |
43 -- 49 |
-23.6415 kcal/mol |
9.38399 kcal/mol |
6.67322 kcal/mol |
50 78@LB@ | |@LB@5'-CAU...AACGG U UUA A GACAA...GCA-3'@LB@ GGAG GUCA GUAGUGUAAUG CCA@LB@ |||: :||| |:|:||:|||| |||@LB@ CCUU UAGU CGUUACGUUAC GGU@LB@3'-UUU...UACAA U CAC CG UGUCU...UUG-5'@LB@ | |@LB@ 66 37@LB@@LB@@LB@Energy -7.58 kcal/mol@LB@Hybridization Energy -23.6415 kcal/mol@LB@Unfolding Energy - mRNA 9.38399 kcal/mol@LB@Unfolding Energy - sRNA 6.67322 kcal/mol@LB@@LB@Position - mRNA 51 -- 77@LB@Position - sRNA 38 -- 65@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 43 -- 49@LB@ |
160 |
0.01821 |
0.3828 |
b0106 |
hofC |
-9.30 |
0.168390 |
246 -- 262 |
42 -- 54 |
assembly protein in type IV pilin biogenesis transmembrane protein |
|
_____________245_______________263\n_____________|_________________|\n5'-UUA...GCGAC________GCAA_____GAUGC...UGG-3'\n______________GGCAAUGC____GAUGG\n______________||||||||____:||||\n______________CCGUUACG____UUACC\n3'-UUU...AGUCA_________________GGGUU...UUG-5'\n_____________|_________________|\n_____________55________________41\n |
247 -- 253 |
47 -- 53 |
-17.2549 kcal/mol |
4.45921 kcal/mol |
3.49932 kcal/mol |
245 263@LB@ | |@LB@5'-UUA...GCGAC GCAA GAUGC...UGG-3'@LB@ GGCAAUGC GAUGG@LB@ |||||||| :||||@LB@ CCGUUACG UUACC@LB@3'-UUU...AGUCA GGGUU...UUG-5'@LB@ | |@LB@ 55 41@LB@@LB@@LB@Energy -9.30 kcal/mol@LB@Hybridization Energy -17.2549 kcal/mol@LB@Unfolding Energy - mRNA 4.45921 kcal/mol@LB@Unfolding Energy - sRNA 3.49932 kcal/mol@LB@@LB@Position - mRNA 246 -- 262@LB@Position - sRNA 42 -- 54@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 47 -- 53@LB@ |
161 |
0.01858 |
0.3864 |
b3237 |
argR |
-5.47 |
0.658327 |
53 -- 70 |
1 -- 21 |
l-arginine-responsive arginine metabolism regulon transcriptional regulator |
|
_____________52____________________71\n_____________|_____________________|\n5'-ACA...AUGCC______C___________UU_UCAAU...UGC-3'\n______________GUGACG____AGGCAUGU__C\n______________|||||:____||||||:|__|\n______________CACUGU____UCCGUAUA__G\n3'-UUU...UUAGA______UAUU________UU_-5'\n_____________|____________________|\n_____________22___________________1\n |
61 -- 67 |
4 -- 10 |
-16.8661 kcal/mol |
6.97949 kcal/mol |
4.41334 kcal/mol |
52 71@LB@ | |@LB@5'-ACA...AUGCC C UU UCAAU...UGC-3'@LB@ GUGACG AGGCAUGU C@LB@ |||||: ||||||:| |@LB@ CACUGU UCCGUAUA G@LB@3'-UUU...UUAGA UAUU UU -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -5.47 kcal/mol@LB@Hybridization Energy -16.8661 kcal/mol@LB@Unfolding Energy - mRNA 6.97949 kcal/mol@LB@Unfolding Energy - sRNA 4.41334 kcal/mol@LB@@LB@Position - mRNA 53 -- 70@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 4 -- 10@LB@ |
162 |
0.01861 |
0.3864 |
b2280 |
nuoJ |
-11.65 |
0.053319 |
100 -- 143 |
1 -- 58 |
NADH:ubiquinone oxidoreductase membrane subunit J |
|
_____________99____________________________________________________________144\n_____________|_____________________________________________________________|\n5'-GAU...UCUAC___A_______________AA_______C__________________________A_____AGAGA...UUA-3'\n______________CGG_UGGCAG_GU_AUGGC__UCGACGG_AAA_____________GAUAAGGGCG___AGC\n______________|:|_|||||:_|:_|||||__:|:||:|_|||_____________:||||:|||:___|:|\n______________GUC_ACCGUU_CG_UACCG__GGUUGUC_UUU_____________UUAUUUCCGU___UUG\n3'-UUU...UUUUA__________A__U______________U___AUUUUAGACACUG__________AUA___-5'\n_____________|____________________________________________________________|\n_____________59___________________________________________________________1\n |
133 -- 139 |
7 -- 13 |
-36.1441 kcal/mol |
12.3456 kcal/mol |
12.1476 kcal/mol |
99 144@LB@ | |@LB@5'-GAU...UCUAC A AA C A AGAGA...UUA-3'@LB@ CGG UGGCAG GU AUGGC UCGACGG AAA GAUAAGGGCG AGC@LB@ |:| |||||: |: ||||| :|:||:| ||| :||||:|||: |:|@LB@ GUC ACCGUU CG UACCG GGUUGUC UUU UUAUUUCCGU UUG@LB@3'-UUU...UUUUA A U U AUUUUAGACACUG AUA -5'@LB@ | |@LB@ 59 1@LB@@LB@@LB@Energy -11.65 kcal/mol@LB@Hybridization Energy -36.1441 kcal/mol@LB@Unfolding Energy - mRNA 12.3456 kcal/mol@LB@Unfolding Energy - sRNA 12.1476 kcal/mol@LB@@LB@Position - mRNA 100 -- 143@LB@Position - sRNA 1 -- 58@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 7 -- 13@LB@ |
163 |
0.01899 |
0.3918 |
b0037 |
caiC |
-9.20 |
0.176089 |
195 -- 204 |
42 -- 51 |
putative crotonobetaine/carnitine-CoA ligase |
|
_____________194________205\n_____________|__________|\n5'-CGG...AUAGA__________AUAUC...GAG-3'\n______________GGUGCAAUGG\n______________::||||||||\n______________UUACGUUACC\n3'-UUU...CACCG__________GGGUU...UUG-5'\n_____________|__________|\n_____________52_________41\n |
198 -- 204 |
42 -- 48 |
-13.9036 kcal/mol |
2.50026 kcal/mol |
2.20704 kcal/mol |
194 205@LB@ | |@LB@5'-CGG...AUAGA AUAUC...GAG-3'@LB@ GGUGCAAUGG@LB@ ::||||||||@LB@ UUACGUUACC@LB@3'-UUU...CACCG GGGUU...UUG-5'@LB@ | |@LB@ 52 41@LB@@LB@@LB@Energy -9.20 kcal/mol@LB@Hybridization Energy -13.9036 kcal/mol@LB@Unfolding Energy - mRNA 2.50026 kcal/mol@LB@Unfolding Energy - sRNA 2.20704 kcal/mol@LB@@LB@Position - mRNA 195 -- 204@LB@Position - sRNA 42 -- 51@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 42 -- 48@LB@ |
164 |
0.01912 |
0.392 |
b0585 |
fes |
-11.27 |
0.064985 |
233 -- 253 |
39 -- 56 |
enterobactin/ferrienterobactin esterase |
|
_____________232____________________254\n_____________|______________________|\n5'-CAU...AGCUG____________AACA______GGAAU...GGU-3'\n______________GUGGCAGU_CGA____UGGCCC\n______________||||||:|_|:|____||||||\n______________CACCGUUA_GUU____ACCGGG\n3'-UUU...UUAGU________C_____________UUGUC...UUG-5'\n_____________|______________________|\n_____________57_____________________38\n |
234 -- 240 |
49 -- 55 |
-24.6014 kcal/mol |
8.56812 kcal/mol |
4.76336 kcal/mol |
232 254@LB@ | |@LB@5'-CAU...AGCUG AACA GGAAU...GGU-3'@LB@ GUGGCAGU CGA UGGCCC@LB@ ||||||:| |:| ||||||@LB@ CACCGUUA GUU ACCGGG@LB@3'-UUU...UUAGU C UUGUC...UUG-5'@LB@ | |@LB@ 57 38@LB@@LB@@LB@Energy -11.27 kcal/mol@LB@Hybridization Energy -24.6014 kcal/mol@LB@Unfolding Energy - mRNA 8.56812 kcal/mol@LB@Unfolding Energy - sRNA 4.76336 kcal/mol@LB@@LB@Position - mRNA 233 -- 253@LB@Position - sRNA 39 -- 56@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 49 -- 55@LB@ |
165 |
0.01953 |
0.3981 |
b0603 |
ybdO |
-12.89 |
0.027143 |
166 -- 206 |
40 -- 73 |
putative DNA-binding transcriptional regulator |
|
_____________165_________________________________________207\n_____________|___________________________________________|\n5'-UCA...GUGAA_____CA_______AAAAUAUAAC___A_______________AAUCU...CAC-3'\n______________UAUAU__UGGAAGA__________CGG__GUAGUGUA_UGGCC\n______________|||||__|||||:|__________|:|__|:|:||:|_|||||\n______________AUAUA__ACCUUUU__________GUC__CGUUACGU_ACCGG\n3'-UUU...GAAAA_____CA_______A____________AC________U_____GUUGU...UUG-5'\n_____________|___________________________________________|\n_____________74__________________________________________39\n |
195 -- 201 |
46 -- 52 |
-24.6879 kcal/mol |
4.92423 kcal/mol |
6.86861 kcal/mol |
165 207@LB@ | |@LB@5'-UCA...GUGAA CA AAAAUAUAAC A AAUCU...CAC-3'@LB@ UAUAU UGGAAGA CGG GUAGUGUA UGGCC@LB@ ||||| |||||:| |:| |:|:||:| |||||@LB@ AUAUA ACCUUUU GUC CGUUACGU ACCGG@LB@3'-UUU...GAAAA CA A AC U GUUGU...UUG-5'@LB@ | |@LB@ 74 39@LB@@LB@@LB@Energy -12.89 kcal/mol@LB@Hybridization Energy -24.6879 kcal/mol@LB@Unfolding Energy - mRNA 4.92423 kcal/mol@LB@Unfolding Energy - sRNA 6.86861 kcal/mol@LB@@LB@Position - mRNA 166 -- 206@LB@Position - sRNA 40 -- 73@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 46 -- 52@LB@ |
166 |
0.01968 |
0.3987 |
b0784 |
moaD |
-8.29 |
0.259720 |
116 -- 144 |
39 -- 53 |
molybdopterin synthase small subunit |
|
_____________115___________________________145\n_____________|_____________________________|\n5'-GCA...GCAAA_________AAAGAUAUGGUGAU______GGUAC...AGC-3'\n______________GCGGUGCAA______________UGGUCC\n______________||::|||||______________|||:||\n______________CGUUACGUU______________ACCGGG\n3'-UUU...GUCAC_____________________________UUGUC...UUG-5'\n_____________|_____________________________|\n_____________54____________________________38\n |
118 -- 124 |
45 -- 51 |
-19.827 kcal/mol |
6.7839 kcal/mol |
4.75794 kcal/mol |
115 145@LB@ | |@LB@5'-GCA...GCAAA AAAGAUAUGGUGAU GGUAC...AGC-3'@LB@ GCGGUGCAA UGGUCC@LB@ ||::||||| |||:||@LB@ CGUUACGUU ACCGGG@LB@3'-UUU...GUCAC UUGUC...UUG-5'@LB@ | |@LB@ 54 38@LB@@LB@@LB@Energy -8.29 kcal/mol@LB@Hybridization Energy -19.827 kcal/mol@LB@Unfolding Energy - mRNA 6.7839 kcal/mol@LB@Unfolding Energy - sRNA 4.75794 kcal/mol@LB@@LB@Position - mRNA 116 -- 144@LB@Position - sRNA 39 -- 53@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 45 -- 51@LB@ |
167 |
0.01994 |
0.3993 |
b1982 |
amn |
-7.06 |
0.411594 |
174 -- 215 |
8 -- 54 |
AMP nucleosidase |
|
_____________173______________________________________________216\n_____________|________________________________________________|\n5'-UUU...UGUGC_____U____________________CACACA___A____________UCCGG...GCA-3'\n______________GGUAA_UGU_AUGG___AACAGGAGA_______UG__AUAAUAAGGGC\n______________||:||_||:_||||___|||||:|:|_______||__|:|||||:|||\n______________CCGUU_ACG_UACC___UUGUCUUUU_______AC__UGUUAUUUCCG\n3'-UUU...AGUCA_________U____GGG_________AUUUUAG__AC___________UAUAUUG-5'\n_____________|________________________________________________|\n_____________55_______________________________________________7\n |
209 -- 215 |
8 -- 14 |
-29.9928 kcal/mol |
10.9089 kcal/mol |
12.019 kcal/mol |
173 216@LB@ | |@LB@5'-UUU...UGUGC U CACACA A UCCGG...GCA-3'@LB@ GGUAA UGU AUGG AACAGGAGA UG AUAAUAAGGGC@LB@ ||:|| ||: |||| |||||:|:| || |:|||||:|||@LB@ CCGUU ACG UACC UUGUCUUUU AC UGUUAUUUCCG@LB@3'-UUU...AGUCA U GGG AUUUUAG AC UAUAUUG-5'@LB@ | |@LB@ 55 7@LB@@LB@@LB@Energy -7.06 kcal/mol@LB@Hybridization Energy -29.9928 kcal/mol@LB@Unfolding Energy - mRNA 10.9089 kcal/mol@LB@Unfolding Energy - sRNA 12.019 kcal/mol@LB@@LB@Position - mRNA 174 -- 215@LB@Position - sRNA 8 -- 54@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 8 -- 14@LB@ |
168 |
0.01999 |
0.3993 |
b2171 |
yeiP |
-9.24 |
0.172435 |
8 -- 24 |
39 -- 54 |
elongation factor P-like protein |
|
_____________7_________________25\n_____________|_________________|\n____5'-UUGAAGG__________CAC____CGCAA...GCG-3'\n______________GGCAGUGCAA___GCCC\n______________||||:|||||___||||\n______________CCGUUACGUU___CGGG\n3'-UUU...AGUCA__________AC_____UUGUC...UUG-5'\n_____________|_________________|\n_____________55________________38\n |
11 -- 17 |
45 -- 51 |
-22.1688 kcal/mol |
8.16527 kcal/mol |
4.76022 kcal/mol |
7 25@LB@ | |@LB@ 5'-UUGAAGG CAC CGCAA...GCG-3'@LB@ GGCAGUGCAA GCCC@LB@ ||||:||||| ||||@LB@ CCGUUACGUU CGGG@LB@3'-UUU...AGUCA AC UUGUC...UUG-5'@LB@ | |@LB@ 55 38@LB@@LB@@LB@Energy -9.24 kcal/mol@LB@Hybridization Energy -22.1688 kcal/mol@LB@Unfolding Energy - mRNA 8.16527 kcal/mol@LB@Unfolding Energy - sRNA 4.76022 kcal/mol@LB@@LB@Position - mRNA 8 -- 24@LB@Position - sRNA 39 -- 54@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 45 -- 51@LB@ |
169 |
0.02007 |
0.3993 |
b1680 |
sufS |
-8.85 |
0.205059 |
78 -- 94 |
33 -- 48 |
cysteine desulfurase stimulated by SufE; selenocysteine lyase PLP-dependent |
|
_____________77________________95\n_____________|_________________|\n5'-AAA...AAUCA____GAU__________UGAUC...CGC-3'\n______________GCAG___GCCCAGCAGA\n______________|||:___|||||:||||\n______________CGUU___CGGGUUGUCU\n3'-UUU...CGUUA____AC___________UUUAU...UUG-5'\n_____________|_________________|\n_____________49________________32\n |
85 -- 91 |
36 -- 42 |
-22.7432 kcal/mol |
5.30025 kcal/mol |
8.59426 kcal/mol |
77 95@LB@ | |@LB@5'-AAA...AAUCA GAU UGAUC...CGC-3'@LB@ GCAG GCCCAGCAGA@LB@ |||: |||||:||||@LB@ CGUU CGGGUUGUCU@LB@3'-UUU...CGUUA AC UUUAU...UUG-5'@LB@ | |@LB@ 49 32@LB@@LB@@LB@Energy -8.85 kcal/mol@LB@Hybridization Energy -22.7432 kcal/mol@LB@Unfolding Energy - mRNA 5.30025 kcal/mol@LB@Unfolding Energy - sRNA 8.59426 kcal/mol@LB@@LB@Position - mRNA 78 -- 94@LB@Position - sRNA 33 -- 48@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 36 -- 42@LB@ |
170 |
0.02048 |
0.4033 |
b3201 |
lptB |
-9.27 |
0.170285 |
9 -- 55 |
2 -- 54 |
lipopolysaccharide export ABC transporter ATPase |
|
_____________8______________________________________________________56\n_____________|______________________________________________________|\n___5'-UUCUGACG________UUAUC_G_______UC___________CA___U_____________GAUCA...GUC-3'\n______________GGUAAUGC_____U_CAGCAGG__GAUA______G__ACA_UAAGGGCG_AUAA\n______________||:|||||_____:_||:|||:__:|||______|__|||_|||:|||:_||||\n______________CCGUUACG_____G_GUUGUCU__UUAU______C__UGU_AUUUCCGU_UAUU\n3'-UUU...AGUCA________UUACC_G_______U_____UUUAGA_AC___U________A____G-5'\n_____________|______________________________________________________|\n_____________55_____________________________________________________1\n |
45 -- 51 |
7 -- 13 |
-32.2484 kcal/mol |
10.9323 kcal/mol |
12.0447 kcal/mol |
8 56@LB@ | |@LB@ 5'-UUCUGACG UUAUC G UC CA U GAUCA...GUC-3'@LB@ GGUAAUGC U CAGCAGG GAUA G ACA UAAGGGCG AUAA@LB@ ||:||||| : ||:|||: :||| | ||| |||:|||: ||||@LB@ CCGUUACG G GUUGUCU UUAU C UGU AUUUCCGU UAUU@LB@3'-UUU...AGUCA UUACC G U UUUAGA AC U A G-5'@LB@ | |@LB@ 55 1@LB@@LB@@LB@Energy -9.27 kcal/mol@LB@Hybridization Energy -32.2484 kcal/mol@LB@Unfolding Energy - mRNA 10.9323 kcal/mol@LB@Unfolding Energy - sRNA 12.0447 kcal/mol@LB@@LB@Position - mRNA 9 -- 55@LB@Position - sRNA 2 -- 54@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 7 -- 13@LB@ |
171 |
0.02062 |
0.4033 |
b3192 |
mlaC |
-11.25 |
0.065504 |
113 -- 124 |
47 -- 58 |
ABC transporter maintaining OM lipid asymmetry periplasmic binding protein |
|
_____________112__________125\n_____________|____________|\n5'-GGA...AAGAA____________GCCAG...AGG-3'\n______________UAGUGGCGAUGC\n______________:||||||:||||\n______________GUCACCGUUACG\n3'-UUU...UUUUA____________UUACC...UUG-5'\n_____________|____________|\n_____________59___________46\n |
118 -- 124 |
47 -- 53 |
-20.0531 kcal/mol |
5.42731 kcal/mol |
3.37136 kcal/mol |
112 125@LB@ | |@LB@5'-GGA...AAGAA GCCAG...AGG-3'@LB@ UAGUGGCGAUGC@LB@ :||||||:||||@LB@ GUCACCGUUACG@LB@3'-UUU...UUUUA UUACC...UUG-5'@LB@ | |@LB@ 59 46@LB@@LB@@LB@Energy -11.25 kcal/mol@LB@Hybridization Energy -20.0531 kcal/mol@LB@Unfolding Energy - mRNA 5.42731 kcal/mol@LB@Unfolding Energy - sRNA 3.37136 kcal/mol@LB@@LB@Position - mRNA 113 -- 124@LB@Position - sRNA 47 -- 58@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 47 -- 53@LB@ |
172 |
0.02065 |
0.4033 |
b1015 |
putP |
-10.70 |
0.086688 |
188 -- 205 |
52 -- 67 |
proline:sodium symporter |
|
_____________187________________206\n_____________|__________________|\n5'-AGA...AUUUU_______CU____A____UAUUA...ACG-3'\n______________UUGGAGA__UUAG_UGGC\n______________|||||:|__|:||_||||\n______________AACCUUU__AGUC_ACCG\n3'-UUU...UAUAC_______U__________UUACG...UUG-5'\n_____________|__________________|\n_____________68_________________51\n |
188 -- 194 |
61 -- 67 |
-15.9795 kcal/mol |
2.37428 kcal/mol |
2.90583 kcal/mol |
187 206@LB@ | |@LB@5'-AGA...AUUUU CU A UAUUA...ACG-3'@LB@ UUGGAGA UUAG UGGC@LB@ |||||:| |:|| ||||@LB@ AACCUUU AGUC ACCG@LB@3'-UUU...UAUAC U UUACG...UUG-5'@LB@ | |@LB@ 68 51@LB@@LB@@LB@Energy -10.70 kcal/mol@LB@Hybridization Energy -15.9795 kcal/mol@LB@Unfolding Energy - mRNA 2.37428 kcal/mol@LB@Unfolding Energy - sRNA 2.90583 kcal/mol@LB@@LB@Position - mRNA 188 -- 205@LB@Position - sRNA 52 -- 67@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 61 -- 67@LB@ |
173 |
0.02087 |
0.4033 |
b2239 |
glpQ |
-12.95 |
0.026326 |
256 -- 274 |
41 -- 66 |
periplasmic glycerophosphodiester phosphodiesterase |
|
_____________255________________________275\n_____________|__________________________|\n5'-CGG...AGUCA__________________________GGCGG...UCA-3'\n______________UGGGAA_______GCAGUGCAAUGGC\n______________|||:||_______|||:|||||||||\n______________ACCUUU_______CGUUACGUUACCG\n3'-UUU...AUACA______UAGUCAC_____________GGUUG...UUG-5'\n_____________|__________________________|\n_____________67_________________________40\n |
268 -- 274 |
41 -- 47 |
-26.6029 kcal/mol |
7.82977 kcal/mol |
5.82355 kcal/mol |
255 275@LB@ | |@LB@5'-CGG...AGUCA GGCGG...UCA-3'@LB@ UGGGAA GCAGUGCAAUGGC@LB@ |||:|| |||:|||||||||@LB@ ACCUUU CGUUACGUUACCG@LB@3'-UUU...AUACA UAGUCAC GGUUG...UUG-5'@LB@ | |@LB@ 67 40@LB@@LB@@LB@Energy -12.95 kcal/mol@LB@Hybridization Energy -26.6029 kcal/mol@LB@Unfolding Energy - mRNA 7.82977 kcal/mol@LB@Unfolding Energy - sRNA 5.82355 kcal/mol@LB@@LB@Position - mRNA 256 -- 274@LB@Position - sRNA 41 -- 66@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 41 -- 47@LB@ |
174 |
0.02096 |
0.4033 |
b3929 |
rraA |
-13.95 |
0.014802 |
2 -- 21 |
45 -- 66 |
ribonuclease E (RNase E) inhibitor protein |
|
_____________1______________________22\n_____________|______________________|\n__________5'-A____CC________________CCAAU...GCG-3'\n______________UGGA____CGGUGGCGAUGCGA\n______________||||____|:|||||:||||:|\n______________ACCU____GUCACCGUUACGUU\n3'-UUU...AUACA____UUUA______________ACCGG...UUG-5'\n_____________|______________________|\n_____________67_____________________44\n |
15 -- 21 |
45 -- 51 |
-26.5083 kcal/mol |
8.28748 kcal/mol |
4.27166 kcal/mol |
1 22@LB@ | |@LB@ 5'-A CC CCAAU...GCG-3'@LB@ UGGA CGGUGGCGAUGCGA@LB@ |||| |:|||||:||||:|@LB@ ACCU GUCACCGUUACGUU@LB@3'-UUU...AUACA UUUA ACCGG...UUG-5'@LB@ | |@LB@ 67 44@LB@@LB@@LB@Energy -13.95 kcal/mol@LB@Hybridization Energy -26.5083 kcal/mol@LB@Unfolding Energy - mRNA 8.28748 kcal/mol@LB@Unfolding Energy - sRNA 4.27166 kcal/mol@LB@@LB@Position - mRNA 2 -- 21@LB@Position - sRNA 45 -- 66@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 45 -- 51@LB@ |
175 |
0.02099 |
0.4033 |
b2913 |
serA |
-5.57 |
0.642321 |
190 -- 257 |
5 -- 65 |
D-3-phosphoglycerate dehydrogenase |
|
_____________189_____________________________________________________________________258\n_____________|_______________________________________________________________________|\n5'-UGU...AGACA___UU____AAA______AG___UCGC___AGAAA________U____UU____C________________CACCA...CCA-3'\n______________GGA__GGGU___UGGCAA__GUA____UGG_____GACA_AGA_UAAG__UCUG_UGGUA__GAAGGCGUG\n______________|||__:::|___||||||__|:|____|||_____:|||_|:|_|||:__||||_||::|__:|||||:|:\n______________CCU__UUUA___ACCGUU__CGU____ACC_____UUGU_UUU_AUUU__AGAC_ACUGU__UUUCCGUAU\n3'-UUU...UACAA_________GUC______A____U______GGG______C___U____U___________UA_________AUUG-5'\n_____________|_______________________________________________________________________|\n_____________66______________________________________________________________________4\n |
251 -- 257 |
5 -- 11 |
-32.5395 kcal/mol |
14.8085 kcal/mol |
12.157 kcal/mol |
189 258@LB@ | |@LB@5'-UGU...AGACA UU AAA AG UCGC AGAAA U UU C CACCA...CCA-3'@LB@ GGA GGGU UGGCAA GUA UGG GACA AGA UAAG UCUG UGGUA GAAGGCGUG@LB@ ||| :::| |||||| |:| ||| :||| |:| |||: |||| ||::| :|||||:|:@LB@ CCU UUUA ACCGUU CGU ACC UUGU UUU AUUU AGAC ACUGU UUUCCGUAU@LB@3'-UUU...UACAA GUC A U GGG C U U UA AUUG-5'@LB@ | |@LB@ 66 4@LB@@LB@@LB@Energy -5.57 kcal/mol@LB@Hybridization Energy -32.5395 kcal/mol@LB@Unfolding Energy - mRNA 14.8085 kcal/mol@LB@Unfolding Energy - sRNA 12.157 kcal/mol@LB@@LB@Position - mRNA 190 -- 257@LB@Position - sRNA 5 -- 65@LB@Position Seed - mRNA 251 -- 257@LB@Position Seed - sRNA 5 -- 11@LB@ |
176 |
0.02144 |
0.4097 |
b0948 |
rlmL |
-6.91 |
0.434425 |
184 -- 201 |
13 -- 33 |
23S rRNA m(2)G2445 and m(7)G2069 methyltransferases SAM-dependent |
|
_____________183___________________202\n_____________|_____________________|\n5'-GAC...CUCUU_____________________UGAAU...GUG-3'\n______________AGAGUAAAA___GUGACGAUA\n______________|:|:|||||___|||||:|||\n______________UUUUAUUUU___CACUGUUAU\n3'-UUU...UUGUC_________AGA_________UUCCG...UUG-5'\n_____________|_____________________|\n_____________34____________________12\n |
195 -- 201 |
13 -- 19 |
-14.282 kcal/mol |
2.4415 kcal/mol |
4.9341 kcal/mol |
183 202@LB@ | |@LB@5'-GAC...CUCUU UGAAU...GUG-3'@LB@ AGAGUAAAA GUGACGAUA@LB@ |:|:||||| |||||:|||@LB@ UUUUAUUUU CACUGUUAU@LB@3'-UUU...UUGUC AGA UUCCG...UUG-5'@LB@ | |@LB@ 34 12@LB@@LB@@LB@Energy -6.91 kcal/mol@LB@Hybridization Energy -14.282 kcal/mol@LB@Unfolding Energy - mRNA 2.4415 kcal/mol@LB@Unfolding Energy - sRNA 4.9341 kcal/mol@LB@@LB@Position - mRNA 184 -- 201@LB@Position - sRNA 13 -- 33@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 13 -- 19@LB@ |
177 |
0.02174 |
0.4127 |
b1725 |
yniA |
-12.81 |
0.028485 |
66 -- 113 |
12 -- 55 |
fructosamine kinase family protein |
|
_____________65__________________________________________________114\n_____________|___________________________________________________|\n5'-GAG...CGACC___G____G_____AAUAG______________UGGUU_____________UCAGU...GGC-3'\n______________UGG_A__G_AAUGG_____CAACAGAAAAUAAA_____UUUG_GGCAAUAA\n______________|||_|__|_|||||_____||||||||||||||_____|:||_|:||||||\n______________ACC_U__C_UUACC_____GUUGUCUUUUAUUU_____AGAC_CUGUUAUU\n3'-UUU...UAGUC___G_UA_G_____GG_________________U________A________UCCGU...UUG-5'\n_____________|___________________________________________________|\n_____________56__________________________________________________11\n |
107 -- 113 |
12 -- 18 |
-33.1768 kcal/mol |
9.27067 kcal/mol |
11.0975 kcal/mol |
65 114@LB@ | |@LB@5'-GAG...CGACC G G AAUAG UGGUU UCAGU...GGC-3'@LB@ UGG A G AAUGG CAACAGAAAAUAAA UUUG GGCAAUAA@LB@ ||| | | ||||| |||||||||||||| |:|| |:||||||@LB@ ACC U C UUACC GUUGUCUUUUAUUU AGAC CUGUUAUU@LB@3'-UUU...UAGUC G UA G GG U A UCCGU...UUG-5'@LB@ | |@LB@ 56 11@LB@@LB@@LB@Energy -12.81 kcal/mol@LB@Hybridization Energy -33.1768 kcal/mol@LB@Unfolding Energy - mRNA 9.27067 kcal/mol@LB@Unfolding Energy - sRNA 11.0975 kcal/mol@LB@@LB@Position - mRNA 66 -- 113@LB@Position - sRNA 12 -- 55@LB@Position Seed - mRNA 107 -- 113@LB@Position Seed - sRNA 12 -- 18@LB@ |
178 |
0.02184 |
0.4127 |
b1466 |
narW |
-11.23 |
0.066200 |
254 -- 267 |
42 -- 56 |
nitrate reductase 2 (NRZ) delta subunit (assembly subunit) |
|
_____________253_____________268\n_____________|_______________|\n5'-AUU...CUGUU____G__________AGGAC...CGC-3'\n______________GUGG_AAUGCAA_GG\n______________||||_|||||||_||\n______________CACC_UUACGUU_CC\n3'-UUU...UUAGU____G_______A__GGGUU...UUG-5'\n_____________|_______________|\n_____________57______________41\n |
259 -- 265 |
45 -- 51 |
-17.8423 kcal/mol |
3.07693 kcal/mol |
3.53153 kcal/mol |
253 268@LB@ | |@LB@5'-AUU...CUGUU G AGGAC...CGC-3'@LB@ GUGG AAUGCAA GG@LB@ |||| ||||||| ||@LB@ CACC UUACGUU CC@LB@3'-UUU...UUAGU G A GGGUU...UUG-5'@LB@ | |@LB@ 57 41@LB@@LB@@LB@Energy -11.23 kcal/mol@LB@Hybridization Energy -17.8423 kcal/mol@LB@Unfolding Energy - mRNA 3.07693 kcal/mol@LB@Unfolding Energy - sRNA 3.53153 kcal/mol@LB@@LB@Position - mRNA 254 -- 267@LB@Position - sRNA 42 -- 56@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 45 -- 51@LB@ |
179 |
0.02223 |
0.4143 |
b2167 |
fruA |
-7.15 |
0.399094 |
192 -- 200 |
5 -- 13 |
fused fructose-specific PTS enzymes: IIBcomponent/IIC components |
|
_____________191_______201\n_____________|_________|\n5'-CGC...GCAGG_________AUGAA...AAA-3'\n______________AGAGGCAUA\n______________|:|||||||\n______________UUUCCGUAU\n3'-UUU...UGUUA_________AUUG-5'\n_____________|_________|\n_____________14________4\n |
194 -- 200 |
5 -- 11 |
-11.8443 kcal/mol |
1.8873 kcal/mol |
2.80332 kcal/mol |
191 201@LB@ | |@LB@5'-CGC...GCAGG AUGAA...AAA-3'@LB@ AGAGGCAUA@LB@ |:|||||||@LB@ UUUCCGUAU@LB@3'-UUU...UGUUA AUUG-5'@LB@ | |@LB@ 14 4@LB@@LB@@LB@Energy -7.15 kcal/mol@LB@Hybridization Energy -11.8443 kcal/mol@LB@Unfolding Energy - mRNA 1.8873 kcal/mol@LB@Unfolding Energy - sRNA 2.80332 kcal/mol@LB@@LB@Position - mRNA 192 -- 200@LB@Position - sRNA 5 -- 13@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 5 -- 11@LB@ |
180 |
0.02233 |
0.4143 |
b0435 |
bolA |
-10.38 |
0.101210 |
35 -- 46 |
39 -- 51 |
stationary-phase morphogene transcriptional repressor for mreB; also regulator for dacA dacC and ampC |
|
_____________34____________47\n_____________|_____________|\n5'-UGA...ACACU_____________GUGUU...CCG-3'\n______________GAUGCGA_GGCCU\n______________:||||:|_||||:\n______________UUACGUU_CCGGG\n3'-UUU...CACCG_______A_____UUGUC...UUG-5'\n_____________|_____________|\n_____________52____________38\n |
35 -- 41 |
45 -- 51 |
-16.689 kcal/mol |
1.55914 kcal/mol |
4.74571 kcal/mol |
34 47@LB@ | |@LB@5'-UGA...ACACU GUGUU...CCG-3'@LB@ GAUGCGA GGCCU@LB@ :||||:| ||||:@LB@ UUACGUU CCGGG@LB@3'-UUU...CACCG A UUGUC...UUG-5'@LB@ | |@LB@ 52 38@LB@@LB@@LB@Energy -10.38 kcal/mol@LB@Hybridization Energy -16.689 kcal/mol@LB@Unfolding Energy - mRNA 1.55914 kcal/mol@LB@Unfolding Energy - sRNA 4.74571 kcal/mol@LB@@LB@Position - mRNA 35 -- 46@LB@Position - sRNA 39 -- 51@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 45 -- 51@LB@ |
181 |
0.02239 |
0.4143 |
b2894 |
xerD |
-11.89 |
0.046874 |
147 -- 194 |
9 -- 61 |
site-specific tyrosine recombinase |
|
_____________146_____________________________________________________195\n_____________|_______________________________________________________|\n5'-ACC...GCUUU_____C____________AA___A_______UC_______GA_____C_______GCGCA...UGU-3'\n______________AGUCA__GGCA___CAAU__GGC_UAAUGGA_____AAAU__GUGAC_AUAAGGG\n______________|:|||__||||___||||__|||_:||::||_____||||__|||||_||||:||\n______________UUAGU__CCGU___GUUA__CCG_GUUGUCU_____UUUA__CACUG_UAUUUCC\n3'-UUU...ACCUU_____CA____UAC_________G_______UUUAU____GA_____U_______GUAUAUUG-5'\n_____________|_______________________________________________________|\n_____________62______________________________________________________8\n |
188 -- 194 |
9 -- 15 |
-33.0704 kcal/mol |
10.0398 kcal/mol |
11.1358 kcal/mol |
146 195@LB@ | |@LB@5'-ACC...GCUUU C AA A UC GA C GCGCA...UGU-3'@LB@ AGUCA GGCA CAAU GGC UAAUGGA AAAU GUGAC AUAAGGG@LB@ |:||| |||| |||| ||| :||::|| |||| ||||| ||||:||@LB@ UUAGU CCGU GUUA CCG GUUGUCU UUUA CACUG UAUUUCC@LB@3'-UUU...ACCUU CA UAC G UUUAU GA U GUAUAUUG-5'@LB@ | |@LB@ 62 8@LB@@LB@@LB@Energy -11.89 kcal/mol@LB@Hybridization Energy -33.0704 kcal/mol@LB@Unfolding Energy - mRNA 10.0398 kcal/mol@LB@Unfolding Energy - sRNA 11.1358 kcal/mol@LB@@LB@Position - mRNA 147 -- 194@LB@Position - sRNA 9 -- 61@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 9 -- 15@LB@ |
182 |
0.02271 |
0.4143 |
b1686 |
menI |
-7.81 |
0.313804 |
214 -- 222 |
57 -- 65 |
1 4-dihydroxy-2-naphthoyl-CoA hydrolase |
|
_____________213_______223\n_____________|_________|\n5'-GGC...GAAAC_________CCCUG...AUG-3'\n______________GGAAAAUCA\n______________|||||||||\n______________CCUUUUAGU\n3'-UUU...UACAA_________CACCG...UUG-5'\n_____________|_________|\n_____________66________56\n |
216 -- 222 |
57 -- 63 |
-11.126 kcal/mol |
2.47866 kcal/mol |
0.839876 kcal/mol |
213 223@LB@ | |@LB@5'-GGC...GAAAC CCCUG...AUG-3'@LB@ GGAAAAUCA@LB@ |||||||||@LB@ CCUUUUAGU@LB@3'-UUU...UACAA CACCG...UUG-5'@LB@ | |@LB@ 66 56@LB@@LB@@LB@Energy -7.81 kcal/mol@LB@Hybridization Energy -11.126 kcal/mol@LB@Unfolding Energy - mRNA 2.47866 kcal/mol@LB@Unfolding Energy - sRNA 0.839876 kcal/mol@LB@@LB@Position - mRNA 214 -- 222@LB@Position - sRNA 57 -- 65@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 57 -- 63@LB@ |
183 |
0.02285 |
0.4143 |
b3262 |
yhdJ |
-12.72 |
0.029953 |
3 -- 23 |
44 -- 69 |
DNA adenine methyltransferase SAM-dependent |
|
_____________2__________________________24\n_____________|__________________________|\n_________5'-CC__________________________ACACC...GUG-3'\n______________UGUUGGA____CA_UGGUGAUGCAAU\n______________|||||||____||_|||::|||||||\n______________ACAACCU____GU_ACCGUUACGUUA\n3'-UUU...AAUAU_______UUUA__C____________CCGGG...UUG-5'\n_____________|__________________________|\n_____________70_________________________43\n |
17 -- 23 |
44 -- 50 |
-23.8856 kcal/mol |
6.69358 kcal/mol |
4.47358 kcal/mol |
2 24@LB@ | |@LB@ 5'-CC ACACC...GUG-3'@LB@ UGUUGGA CA UGGUGAUGCAAU@LB@ ||||||| || |||::|||||||@LB@ ACAACCU GU ACCGUUACGUUA@LB@3'-UUU...AAUAU UUUA C CCGGG...UUG-5'@LB@ | |@LB@ 70 43@LB@@LB@@LB@Energy -12.72 kcal/mol@LB@Hybridization Energy -23.8856 kcal/mol@LB@Unfolding Energy - mRNA 6.69358 kcal/mol@LB@Unfolding Energy - sRNA 4.47358 kcal/mol@LB@@LB@Position - mRNA 3 -- 23@LB@Position - sRNA 44 -- 69@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 44 -- 50@LB@ |
184 |
0.02285 |
0.4143 |
b4312 |
fimB |
-10.59 |
0.091292 |
169 -- 221 |
1 -- 58 |
tyrosine recombinase/inversion of on/off regulator of fimA |
|
_____________168________________________________________________________________222\n_____________|__________________________________________________________________|\n5'-AUG...ACAGC_____C___UC______UA_____G________________________AGAAUA____UG_____AAAAA...GUA-3'\n______________UAGUG_GCG__UGUAAU____UAA_GGAAAA___________ACGAUGA______AGGC__AUAAC\n______________:||||_||:__||:|||____:||_:|||||___________||:||:|______||||__|||||\n______________GUCAC_CGU__ACGUUA____GUU_UCUUUU___________UGUUAUU______UCCG__UAUUG\n3'-UUU...UUUUA_________U_______CCGG___G______AUUUUAGACAC_________________UA_____-5'\n_____________|_________________________________________________________________|\n_____________59________________________________________________________________1\n |
198 -- 204 |
12 -- 18 |
-31.4649 kcal/mol |
8.72248 kcal/mol |
12.1476 kcal/mol |
168 222@LB@ | |@LB@5'-AUG...ACAGC C UC UA G AGAAUA UG AAAAA...GUA-3'@LB@ UAGUG GCG UGUAAU UAA GGAAAA ACGAUGA AGGC AUAAC@LB@ :|||| ||: ||:||| :|| :||||| ||:||:| |||| |||||@LB@ GUCAC CGU ACGUUA GUU UCUUUU UGUUAUU UCCG UAUUG@LB@3'-UUU...UUUUA U CCGG G AUUUUAGACAC UA -5'@LB@ | |@LB@ 59 1@LB@@LB@@LB@Energy -10.59 kcal/mol@LB@Hybridization Energy -31.4649 kcal/mol@LB@Unfolding Energy - mRNA 8.72248 kcal/mol@LB@Unfolding Energy - sRNA 12.1476 kcal/mol@LB@@LB@Position - mRNA 169 -- 221@LB@Position - sRNA 1 -- 58@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 12 -- 18@LB@ |
185 |
0.02287 |
0.4143 |
b3460 |
livJ |
-12.49 |
0.033972 |
245 -- 276 |
28 -- 54 |
branched-chain amino acid ABC transporter periplasmic binding protein |
|
_____________244______________________________277\n_____________|________________________________|\n5'-AAU...GCGCU____UUCA___AU_______U___________UUAAA...CAA-3'\n______________GGCA____GCA__AUGGCUC_GGCAGAAGAUA\n______________||||____|||__|||||:|_::|||||:|||\n______________CCGU____CGU__UACCGGG_UUGUCUUUUAU\n3'-UUU...AGUCA____UA__________________________UUUAG...UUG-5'\n_____________|________________________________|\n_____________55_______________________________27\n |
258 -- 264 |
39 -- 45 |
-29.3573 kcal/mol |
7.88401 kcal/mol |
8.98285 kcal/mol |
244 277@LB@ | |@LB@5'-AAU...GCGCU UUCA AU U UUAAA...CAA-3'@LB@ GGCA GCA AUGGCUC GGCAGAAGAUA@LB@ |||| ||| |||||:| ::|||||:|||@LB@ CCGU CGU UACCGGG UUGUCUUUUAU@LB@3'-UUU...AGUCA UA UUUAG...UUG-5'@LB@ | |@LB@ 55 27@LB@@LB@@LB@Energy -12.49 kcal/mol@LB@Hybridization Energy -29.3573 kcal/mol@LB@Unfolding Energy - mRNA 7.88401 kcal/mol@LB@Unfolding Energy - sRNA 8.98285 kcal/mol@LB@@LB@Position - mRNA 245 -- 276@LB@Position - sRNA 28 -- 54@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 39 -- 45@LB@ |
186 |
0.02292 |
0.4143 |
b2717 |
hycI |
-8.63 |
0.225035 |
220 -- 254 |
38 -- 70 |
protease involved in processing C-terminal end of HycE |
|
_____________219___________________________________255\n_____________|_____________________________________|\n5'-AGC...ACUCU_______C__UAG__UGAUG______________G__GGUCC...ACU-3'\n______________GUGUUGG_AA___CA_____GGCGAUG__AUGGC_CA\n______________:||||||_||___||_____|||:|||__|||||_||\n______________UACAACC_UU___GU_____CCGUUAC__UACCG_GU\n3'-UUU...AAAUA__________UUA__CA__________GU_____G__UGUCU...UUG-5'\n_____________|_____________________________________|\n_____________71____________________________________37\n |
240 -- 246 |
48 -- 54 |
-27.127 kcal/mol |
11.1995 kcal/mol |
7.29667 kcal/mol |
219 255@LB@ | |@LB@5'-AGC...ACUCU C UAG UGAUG G GGUCC...ACU-3'@LB@ GUGUUGG AA CA GGCGAUG AUGGC CA@LB@ :|||||| || || |||:||| ||||| ||@LB@ UACAACC UU GU CCGUUAC UACCG GU@LB@3'-UUU...AAAUA UUA CA GU G UGUCU...UUG-5'@LB@ | |@LB@ 71 37@LB@@LB@@LB@Energy -8.63 kcal/mol@LB@Hybridization Energy -27.127 kcal/mol@LB@Unfolding Energy - mRNA 11.1995 kcal/mol@LB@Unfolding Energy - sRNA 7.29667 kcal/mol@LB@@LB@Position - mRNA 220 -- 254@LB@Position - sRNA 38 -- 70@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 48 -- 54@LB@ |
187 |
0.02306 |
0.4145 |
b1854 |
pykA |
-9.88 |
0.128920 |
243 -- 268 |
12 -- 43 |
pyruvate kinase II |
|
_____________242______________________________269\n_____________|________________________________|\n5'-GAA...CGUUA_________AC____________C________UCUUG...ACG-3'\n______________GGCCCAGCA_______AGAUC_G_GAUAAUAA\n______________||||||:||_______|:|||_|_||:|||||\n______________CCGGGUUGU_______UUUAG_C_CUGUUAUU\n3'-UUU...CGUUA_________CUUUUAU_____A_A________UCCGU...UUG-5'\n_____________|________________________________|\n_____________44_______________________________11\n |
262 -- 268 |
12 -- 18 |
-24.7448 kcal/mol |
4.16838 kcal/mol |
10.6985 kcal/mol |
242 269@LB@ | |@LB@5'-GAA...CGUUA AC C UCUUG...ACG-3'@LB@ GGCCCAGCA AGAUC G GAUAAUAA@LB@ ||||||:|| |:||| | ||:|||||@LB@ CCGGGUUGU UUUAG C CUGUUAUU@LB@3'-UUU...CGUUA CUUUUAU A A UCCGU...UUG-5'@LB@ | |@LB@ 44 11@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -24.7448 kcal/mol@LB@Unfolding Energy - mRNA 4.16838 kcal/mol@LB@Unfolding Energy - sRNA 10.6985 kcal/mol@LB@@LB@Position - mRNA 243 -- 268@LB@Position - sRNA 12 -- 43@LB@Position Seed - mRNA 262 -- 268@LB@Position Seed - sRNA 12 -- 18@LB@ |
188 |
0.02326 |
0.4145 |
b2501 |
ppk |
-10.84 |
0.080977 |
186 -- 203 |
48 -- 65 |
polyphosphate kinase component of RNA degradosome |
|
_____________185________________204\n_____________|__________________|\n5'-CGC...AAAAC____UAAA__________GGUCA...UUG-3'\n______________GGAG____AGUGGUAAUG\n______________|||:____|||||:||||\n______________CCUU____UCACCGUUAC\n3'-UUU...UACAA____UUAG__________GUUAC...UUG-5'\n_____________|__________________|\n_____________66_________________47\n |
197 -- 203 |
48 -- 54 |
-18.775 kcal/mol |
3.93073 kcal/mol |
4.00814 kcal/mol |
185 204@LB@ | |@LB@5'-CGC...AAAAC UAAA GGUCA...UUG-3'@LB@ GGAG AGUGGUAAUG@LB@ |||: |||||:||||@LB@ CCUU UCACCGUUAC@LB@3'-UUU...UACAA UUAG GUUAC...UUG-5'@LB@ | |@LB@ 66 47@LB@@LB@@LB@Energy -10.84 kcal/mol@LB@Hybridization Energy -18.775 kcal/mol@LB@Unfolding Energy - mRNA 3.93073 kcal/mol@LB@Unfolding Energy - sRNA 4.00814 kcal/mol@LB@@LB@Position - mRNA 186 -- 203@LB@Position - sRNA 48 -- 65@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 48 -- 54@LB@ |
189 |
0.02329 |
0.4145 |
b1823 |
cspC |
-8.37 |
0.250499 |
214 -- 248 |
8 -- 63 |
stress protein member of the CspA-family |
|
_____________213______________________________________________________249\n_____________|________________________________________________________|\n5'-UAU...GAUUA____________UA__________________________________________UUUGG...UCU-3'\n______________AAGGUCA__GGU_____AGUGGUUCAAC________GAGUC________UAAAGGU\n______________||::|||__||:_____|:|||::||||________:|:||________||||||:\n______________UUUUAGU__CCG_____UUACCGGGUUG________UUUAG________AUUUCCG\n3'-UUU...CAACC_______CA___UUACG___________UCUUUUAU_____ACACUGUU_______UAUAUUG-5'\n_____________|________________________________________________________|\n_____________64_______________________________________________________7\n |
242 -- 248 |
8 -- 14 |
-25.9028 kcal/mol |
5.39828 kcal/mol |
12.1311 kcal/mol |
213 249@LB@ | |@LB@5'-UAU...GAUUA UA UUUGG...UCU-3'@LB@ AAGGUCA GGU AGUGGUUCAAC GAGUC UAAAGGU@LB@ ||::||| ||: |:|||::|||| :|:|| ||||||:@LB@ UUUUAGU CCG UUACCGGGUUG UUUAG AUUUCCG@LB@3'-UUU...CAACC CA UUACG UCUUUUAU ACACUGUU UAUAUUG-5'@LB@ | |@LB@ 64 7@LB@@LB@@LB@Energy -8.37 kcal/mol@LB@Hybridization Energy -25.9028 kcal/mol@LB@Unfolding Energy - mRNA 5.39828 kcal/mol@LB@Unfolding Energy - sRNA 12.1311 kcal/mol@LB@@LB@Position - mRNA 214 -- 248@LB@Position - sRNA 8 -- 63@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 8 -- 14@LB@ |
190 |
0.0237 |
0.4194 |
b0428 |
cyoE |
-16.93 |
0.002220 |
1 -- 26 |
41 -- 65 |
protoheme IX farnesyltransferase |
|
______________1__________________________27\n______________|__________________________|\n___________5'-____C____C________G________ACAGG...GCA-3'\n______________GGAA_AAUC__UGGCAAU_GCAGUGGU\n______________||||_||||__|||||||_|||:|||:\n______________CCUU_UUAG__ACCGUUA_CGUUACCG\n3'-UUU...UACAA_________UC________________GGUUG...UUG-5'\n_____________|___________________________|\n_____________66__________________________40\n |
20 -- 26 |
41 -- 47 |
-29.3415 kcal/mol |
6.59984 kcal/mol |
5.80973 kcal/mol |
1 27@LB@ | |@LB@ 5'- C C G ACAGG...GCA-3'@LB@ GGAA AAUC UGGCAAU GCAGUGGU@LB@ |||| |||| ||||||| |||:|||:@LB@ CCUU UUAG ACCGUUA CGUUACCG@LB@3'-UUU...UACAA UC GGUUG...UUG-5'@LB@ | |@LB@ 66 40@LB@@LB@@LB@Energy -16.93 kcal/mol@LB@Hybridization Energy -29.3415 kcal/mol@LB@Unfolding Energy - mRNA 6.59984 kcal/mol@LB@Unfolding Energy - sRNA 5.80973 kcal/mol@LB@@LB@Position - mRNA 1 -- 26@LB@Position - sRNA 41 -- 65@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 41 -- 47@LB@ |
191 |
0.02382 |
0.4194 |
b4567 |
yjjZ |
-11.31 |
0.063816 |
288 -- 298 |
51 -- 61 |
uncharacterized protein |
|
_____________287_________299\n_____________|___________|\n5'-CGG...CGUCA___________GA-3'\n______________GAUCAGUGGCG\n______________:|||||||||:\n______________UUAGUCACCGU\n3'-UUU...ACCUU___________UACGU...UUG-5'\n_____________|___________|\n_____________62__________50\n |
292 -- 298 |
51 -- 57 |
-17.6489 kcal/mol |
3.61415 kcal/mol |
2.72961 kcal/mol |
287 299@LB@ | |@LB@5'-CGG...CGUCA GA-3'@LB@ GAUCAGUGGCG@LB@ :|||||||||:@LB@ UUAGUCACCGU@LB@3'-UUU...ACCUU UACGU...UUG-5'@LB@ | |@LB@ 62 50@LB@@LB@@LB@Energy -11.31 kcal/mol@LB@Hybridization Energy -17.6489 kcal/mol@LB@Unfolding Energy - mRNA 3.61415 kcal/mol@LB@Unfolding Energy - sRNA 2.72961 kcal/mol@LB@@LB@Position - mRNA 288 -- 298@LB@Position - sRNA 51 -- 61@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 51 -- 57@LB@ |
192 |
0.02397 |
0.4199 |
b2465 |
tktB |
-14.96 |
0.008038 |
72 -- 123 |
6 -- 68 |
transketolase 2 thiamine triphosphate-binding |
|
_____________71__________________________________________________________________124\n_____________|___________________________________________________________________|\n5'-AGU...GUUCC_______GCAC_____________________GG_________ACU_____________________UCGUC...CUG-3'\n______________GUUGGGA____AAUCAG____GAUGCGAUGGC____UAGAAAA____GUCUG________AAGGCAU\n______________|||||:|____||||||____:||||:|||||____:||||||____:||||________|||||||\n______________CAACCUU____UUAGUC____UUACGUUACCG____GUCUUUU____UAGAC________UUCCGUA\n3'-UUU...AUAUA_________________ACCG___________GGUU_______AUUU_____ACUGUUAU_______UAUUG-5'\n_____________|___________________________________________________________________|\n_____________69__________________________________________________________________5\n |
117 -- 123 |
6 -- 12 |
-46.2591 kcal/mol |
19.141 kcal/mol |
12.1601 kcal/mol |
71 124@LB@ | |@LB@5'-AGU...GUUCC GCAC GG ACU UCGUC...CUG-3'@LB@ GUUGGGA AAUCAG GAUGCGAUGGC UAGAAAA GUCUG AAGGCAU@LB@ |||||:| |||||| :||||:||||| :|||||| :|||| |||||||@LB@ CAACCUU UUAGUC UUACGUUACCG GUCUUUU UAGAC UUCCGUA@LB@3'-UUU...AUAUA ACCG GGUU AUUU ACUGUUAU UAUUG-5'@LB@ | |@LB@ 69 5@LB@@LB@@LB@Energy -14.96 kcal/mol@LB@Hybridization Energy -46.2591 kcal/mol@LB@Unfolding Energy - mRNA 19.141 kcal/mol@LB@Unfolding Energy - sRNA 12.1601 kcal/mol@LB@@LB@Position - mRNA 72 -- 123@LB@Position - sRNA 6 -- 68@LB@Position Seed - mRNA 117 -- 123@LB@Position Seed - sRNA 6 -- 12@LB@ |
193 |
0.02433 |
0.4239 |
b1125 |
potB |
-7.71 |
0.326143 |
48 -- 60 |
50 -- 66 |
spermidine/putrescine ABC transporter permease |
|
_____________47________________61\n_____________|_________________|\n5'-UCG...UGAAC_________________GAUGG...UUG-3'\n______________UGGAAAA____UGGCAA\n______________|||||||____||||||\n______________ACCUUUU____ACCGUU\n3'-UUU...AUACA_______AGUC______ACGUU...UUG-5'\n_____________|_________________|\n_____________67________________49\n |
48 -- 54 |
60 -- 66 |
-13.9172 kcal/mol |
3.09187 kcal/mol |
3.11877 kcal/mol |
47 61@LB@ | |@LB@5'-UCG...UGAAC GAUGG...UUG-3'@LB@ UGGAAAA UGGCAA@LB@ ||||||| ||||||@LB@ ACCUUUU ACCGUU@LB@3'-UUU...AUACA AGUC ACGUU...UUG-5'@LB@ | |@LB@ 67 49@LB@@LB@@LB@Energy -7.71 kcal/mol@LB@Hybridization Energy -13.9172 kcal/mol@LB@Unfolding Energy - mRNA 3.09187 kcal/mol@LB@Unfolding Energy - sRNA 3.11877 kcal/mol@LB@@LB@Position - mRNA 48 -- 60@LB@Position - sRNA 50 -- 66@LB@Position Seed - mRNA 48 -- 54@LB@Position Seed - sRNA 60 -- 66@LB@ |
194 |
0.0246 |
0.4256 |
b0211 |
mltD |
-5.59 |
0.639593 |
30 -- 36 |
59 -- 65 |
putative membrane-bound lytic murein transglycosylase D |
|
_____________29______37\n_____________|_______|\n5'-GAG...AGAAC_______AUUGA...GUC-3'\n______________GGAAGAU\n______________||||:||\n______________CCUUUUA\n3'-UUU...UACAA_______GUCAC...UUG-5'\n_____________|_______|\n_____________66______58\n |
30 -- 36 |
59 -- 65 |
-7.35578 kcal/mol |
0.945124 kcal/mol |
0.81955 kcal/mol |
29 37@LB@ | |@LB@5'-GAG...AGAAC AUUGA...GUC-3'@LB@ GGAAGAU@LB@ ||||:||@LB@ CCUUUUA@LB@3'-UUU...UACAA GUCAC...UUG-5'@LB@ | |@LB@ 66 58@LB@@LB@@LB@Energy -5.59 kcal/mol@LB@Hybridization Energy -7.35578 kcal/mol@LB@Unfolding Energy - mRNA 0.945124 kcal/mol@LB@Unfolding Energy - sRNA 0.81955 kcal/mol@LB@@LB@Position - mRNA 30 -- 36@LB@Position - sRNA 59 -- 65@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 59 -- 65@LB@ |
195 |
0.02483 |
0.4256 |
b2905 |
gcvT |
-11.07 |
0.071827 |
75 -- 92 |
41 -- 59 |
aminomethyltransferase tetrahydrofolate-dependent subunit (T protein) of glycine cleavage complex |
|
_____________74__________________93\n_____________|___________________|\n5'-CUG...CUGUU_____________UCA___AAAAG...AAA-3'\n______________UCGGUGGUAA_GU___GGC\n______________||:||||:||_|:___|||\n______________AGUCACCGUU_CG___CCG\n3'-UUU...CUUUU__________A__UUA___GGUUG...UUG-5'\n_____________|___________________|\n_____________60__________________40\n |
78 -- 84 |
50 -- 56 |
-19.3336 kcal/mol |
3.99003 kcal/mol |
4.26967 kcal/mol |
74 93@LB@ | |@LB@5'-CUG...CUGUU UCA AAAAG...AAA-3'@LB@ UCGGUGGUAA GU GGC@LB@ ||:||||:|| |: |||@LB@ AGUCACCGUU CG CCG@LB@3'-UUU...CUUUU A UUA GGUUG...UUG-5'@LB@ | |@LB@ 60 40@LB@@LB@@LB@Energy -11.07 kcal/mol@LB@Hybridization Energy -19.3336 kcal/mol@LB@Unfolding Energy - mRNA 3.99003 kcal/mol@LB@Unfolding Energy - sRNA 4.26967 kcal/mol@LB@@LB@Position - mRNA 75 -- 92@LB@Position - sRNA 41 -- 59@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 50 -- 56@LB@ |
196 |
0.02524 |
0.4256 |
b1805 |
fadD |
-8.19 |
0.269381 |
280 -- 298 |
55 -- 72 |
acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) |
|
_____________279_________________299\n_____________|___________________|\n5'-UUG...GGUAG_______U___C_______CG-3'\n______________AUAUGUU_GAG_AGUCGGU\n______________|||||||_||:_|:||:||\n______________UAUACAA_CUU_UUAGUCA\n3'-UUU...AAAAA_______C___________CCGUU...UUG-5'\n_____________|___________________|\n_____________73__________________54\n |
292 -- 298 |
55 -- 61 |
-14.048 kcal/mol |
3.20699 kcal/mol |
2.64594 kcal/mol |
279 299@LB@ | |@LB@5'-UUG...GGUAG U C CG-3'@LB@ AUAUGUU GAG AGUCGGU@LB@ ||||||| ||: |:||:||@LB@ UAUACAA CUU UUAGUCA@LB@3'-UUU...AAAAA C CCGUU...UUG-5'@LB@ | |@LB@ 73 54@LB@@LB@@LB@Energy -8.19 kcal/mol@LB@Hybridization Energy -14.048 kcal/mol@LB@Unfolding Energy - mRNA 3.20699 kcal/mol@LB@Unfolding Energy - sRNA 2.64594 kcal/mol@LB@@LB@Position - mRNA 280 -- 298@LB@Position - sRNA 55 -- 72@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 55 -- 61@LB@ |
197 |
0.02537 |
0.4256 |
b3317 |
rplB |
-11.01 |
0.074049 |
182 -- 205 |
41 -- 62 |
50S ribosomal subunit protein L2 |
|
_____________181______________________206\n_____________|________________________|\n5'-GCA...UGAGU_______AG_A_____A_______AGUUG...UGC-3'\n______________AAGUCGG__G_GUAAU_CAAUGGC\n______________||:||:|__|_|:|||_|||||||\n______________UUUAGUC__C_CGUUA_GUUACCG\n3'-UUU...AACCU_______A________C_______GGUUG...UUG-5'\n_____________|________________________|\n_____________63_______________________40\n |
199 -- 205 |
41 -- 47 |
-19.8959 kcal/mol |
4.6063 kcal/mol |
4.27585 kcal/mol |
181 206@LB@ | |@LB@5'-GCA...UGAGU AG A A AGUUG...UGC-3'@LB@ AAGUCGG G GUAAU CAAUGGC@LB@ ||:||:| | |:||| |||||||@LB@ UUUAGUC C CGUUA GUUACCG@LB@3'-UUU...AACCU A C GGUUG...UUG-5'@LB@ | |@LB@ 63 40@LB@@LB@@LB@Energy -11.01 kcal/mol@LB@Hybridization Energy -19.8959 kcal/mol@LB@Unfolding Energy - mRNA 4.6063 kcal/mol@LB@Unfolding Energy - sRNA 4.27585 kcal/mol@LB@@LB@Position - mRNA 182 -- 205@LB@Position - sRNA 41 -- 62@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 41 -- 47@LB@ |
198 |
0.02539 |
0.4256 |
b1624 |
ydgJ |
-9.27 |
0.170491 |
217 -- 246 |
45 -- 70 |
putative oxidoreductase |
|
_____________216____________________________247\n_____________|______________________________|\n5'-GUA...CAUCC________UU______GUA____U______GCAAA...CGG-3'\n______________GUGUUGGG__GAUUGG___UGGU_AUGCGA\n______________:||||||:__:||::|___|||:_||||:|\n______________UACAACCU__UUAGUC___ACCG_UACGUU\n3'-UUU...AAAUA________U______________U______ACCGG...UUG-5'\n_____________|______________________________|\n_____________71_____________________________44\n |
218 -- 224 |
63 -- 69 |
-23.4852 kcal/mol |
9.77058 kcal/mol |
4.44589 kcal/mol |
216 247@LB@ | |@LB@5'-GUA...CAUCC UU GUA U GCAAA...CGG-3'@LB@ GUGUUGGG GAUUGG UGGU AUGCGA@LB@ :||||||: :||::| |||: ||||:|@LB@ UACAACCU UUAGUC ACCG UACGUU@LB@3'-UUU...AAAUA U U ACCGG...UUG-5'@LB@ | |@LB@ 71 44@LB@@LB@@LB@Energy -9.27 kcal/mol@LB@Hybridization Energy -23.4852 kcal/mol@LB@Unfolding Energy - mRNA 9.77058 kcal/mol@LB@Unfolding Energy - sRNA 4.44589 kcal/mol@LB@@LB@Position - mRNA 217 -- 246@LB@Position - sRNA 45 -- 70@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 63 -- 69@LB@ |
199 |
0.02539 |
0.4256 |
b2094 |
gatA |
-8.91 |
0.199733 |
27 -- 47 |
1 -- 21 |
galactitol-specific enzyme IIA component of PTS |
|
_____________26_____________________48\n_____________|______________________|\n5'-UUA...UGAUG____AUCU______________AUCCC...AUG-3'\n______________GUGA____UGAAGGCGUG_GAC\n______________||||____|:|||||:|:_:||\n______________CACU____AUUUCCGUAU_UUG\n3'-UUU...UUAGA____GUU___________A___-5'\n_____________|_____________________|\n_____________22____________________1\n |
38 -- 44 |
5 -- 11 |
-17.7737 kcal/mol |
4.45083 kcal/mol |
4.41334 kcal/mol |
26 48@LB@ | |@LB@5'-UUA...UGAUG AUCU AUCCC...AUG-3'@LB@ GUGA UGAAGGCGUG GAC@LB@ |||| |:|||||:|: :||@LB@ CACU AUUUCCGUAU UUG@LB@3'-UUU...UUAGA GUU A -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -8.91 kcal/mol@LB@Hybridization Energy -17.7737 kcal/mol@LB@Unfolding Energy - mRNA 4.45083 kcal/mol@LB@Unfolding Energy - sRNA 4.41334 kcal/mol@LB@@LB@Position - mRNA 27 -- 47@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 38 -- 44@LB@Position Seed - sRNA 5 -- 11@LB@ |
200 |
0.0254 |
0.4256 |
b0975 |
hyaD |
-14.05 |
0.013908 |
10 -- 31 |
42 -- 66 |
hydrogenase 1 maturation protease |
|
_____________9_________________________32\n_____________|_________________________|\n5'-UUU...UCUAC____CG___________CU______ACAUU...ACC-3'\n______________UGGA_____GGUGGCAA__CAAUGG\n______________||||_____:|||||||__||||||\n______________ACCU_____UCACCGUU__GUUACC\n3'-UUU...AUACA____UUUAG________AC______GGGUU...UUG-5'\n_____________|_________________________|\n_____________67________________________41\n |
17 -- 23 |
50 -- 56 |
-23.7385 kcal/mol |
4.08533 kcal/mol |
5.59884 kcal/mol |
9 32@LB@ | |@LB@5'-UUU...UCUAC CG CU ACAUU...ACC-3'@LB@ UGGA GGUGGCAA CAAUGG@LB@ |||| :||||||| ||||||@LB@ ACCU UCACCGUU GUUACC@LB@3'-UUU...AUACA UUUAG AC GGGUU...UUG-5'@LB@ | |@LB@ 67 41@LB@@LB@@LB@Energy -14.05 kcal/mol@LB@Hybridization Energy -23.7385 kcal/mol@LB@Unfolding Energy - mRNA 4.08533 kcal/mol@LB@Unfolding Energy - sRNA 5.59884 kcal/mol@LB@@LB@Position - mRNA 10 -- 31@LB@Position - sRNA 42 -- 66@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 50 -- 56@LB@ |