14 |
0.003078 |
0.593 |
b0886 |
cydC |
-10.90 |
0.026971 |
183 -- 199 |
39 -- 56 |
glutathione/cysteine ABC transporter export permease/ATPase |
|
_____________182________________200\n_____________|__________________|\n5'-GCG...CCCAU_____________A____AAUGC...UCG-3'\n______________CGUC_AGGAGGAG_UUUA\n______________||||_|:|||||:_||:|\n______________GCAG_UUCUCCUU_AAGU\n3'-UUU...ACCGG____U________A____AAAAA...ACA-5'\n_____________|__________________|\n_____________57_________________38\n |
188 -- 194 |
44 -- 50 |
-16.2318 kcal/mol |
4.17801 kcal/mol |
1.15786 kcal/mol |
182 200@LB@ | |@LB@5'-GCG...CCCAU A AAUGC...UCG-3'@LB@ CGUC AGGAGGAG UUUA@LB@ |||| |:|||||: ||:|@LB@ GCAG UUCUCCUU AAGU@LB@3'-UUU...ACCGG U A AAAAA...ACA-5'@LB@ | |@LB@ 57 38@LB@@LB@@LB@Energy -10.90 kcal/mol@LB@Hybridization Energy -16.2318 kcal/mol@LB@Unfolding Energy - mRNA 4.17801 kcal/mol@LB@Unfolding Energy - sRNA 1.15786 kcal/mol@LB@@LB@Position - mRNA 183 -- 199@LB@Position - sRNA 39 -- 56@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 44 -- 50@LB@ |
181 |
0.03769 |
0.6177 |
b0912 |
ihfB |
-7.34 |
0.140491 |
192 -- 199 |
43 -- 50 |
integration host factor (IHF) DNA-binding protein beta subunit |
|
_____________191______200\n_____________|________|\n5'-ACG...GAACC________CAUGA...UGG-3'\n______________GGAGGAAU\n______________:|||||||\n______________UCUCCUUA\n3'-UUU...CAGUU________AAGUA...ACA-5'\n_____________|________|\n_____________51_______42\n |
193 -- 199 |
43 -- 49 |
-10.3812 kcal/mol |
2.20002 kcal/mol |
0.845564 kcal/mol |
191 200@LB@ | |@LB@5'-ACG...GAACC CAUGA...UGG-3'@LB@ GGAGGAAU@LB@ :|||||||@LB@ UCUCCUUA@LB@3'-UUU...CAGUU AAGUA...ACA-5'@LB@ | |@LB@ 51 42@LB@@LB@@LB@Energy -7.34 kcal/mol@LB@Hybridization Energy -10.3812 kcal/mol@LB@Unfolding Energy - mRNA 2.20002 kcal/mol@LB@Unfolding Energy - sRNA 0.845564 kcal/mol@LB@@LB@Position - mRNA 192 -- 199@LB@Position - sRNA 43 -- 50@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 43 -- 49@LB@ |
113 |
0.02257 |
0.6177 |
b0915 |
lpxK |
-7.55 |
0.127690 |
105 -- 116 |
46 -- 56 |
lipid A 4'kinase |
|
_____________104__________117\n_____________|____________|\n5'-GAA...GUGGU_________U__UGUCA...GCU-3'\n______________CGUCGAGGA_GG\n______________||||:|:||_||\n______________GCAGUUUCU_CC\n3'-UUU...ACCGG____________UUAAA...ACA-5'\n_____________|____________|\n_____________57___________45\n |
107 -- 113 |
48 -- 54 |
-12.734 kcal/mol |
4.25329 kcal/mol |
0.93204 kcal/mol |
104 117@LB@ | |@LB@5'-GAA...GUGGU U UGUCA...GCU-3'@LB@ CGUCGAGGA GG@LB@ ||||:|:|| ||@LB@ GCAGUUUCU CC@LB@3'-UUU...ACCGG UUAAA...ACA-5'@LB@ | |@LB@ 57 45@LB@@LB@@LB@Energy -7.55 kcal/mol@LB@Hybridization Energy -12.734 kcal/mol@LB@Unfolding Energy - mRNA 4.25329 kcal/mol@LB@Unfolding Energy - sRNA 0.93204 kcal/mol@LB@@LB@Position - mRNA 105 -- 116@LB@Position - sRNA 46 -- 56@LB@Position Seed - mRNA 107 -- 113@LB@Position Seed - sRNA 48 -- 54@LB@ |
178 |
0.03627 |
0.6177 |
b0924 |
mukB |
-9.59 |
0.049840 |
186 -- 195 |
44 -- 53 |
chromosome condensin MukBEF ATPase and DNA-binding subunit |
|
_____________185________196\n_____________|__________|\n5'-UGG...GAUAG__________GAAUA...CUG-3'\n______________CGGAGAGGAA\n______________|::|||||||\n______________GUUUCUCCUU\n3'-UUU...GGGCA__________AAAGU...ACA-5'\n_____________|__________|\n_____________54_________43\n |
189 -- 195 |
44 -- 50 |
-13.8471 kcal/mol |
3.32824 kcal/mol |
0.927997 kcal/mol |
185 196@LB@ | |@LB@5'-UGG...GAUAG GAAUA...CUG-3'@LB@ CGGAGAGGAA@LB@ |::|||||||@LB@ GUUUCUCCUU@LB@3'-UUU...GGGCA AAAGU...ACA-5'@LB@ | |@LB@ 54 43@LB@@LB@@LB@Energy -9.59 kcal/mol@LB@Hybridization Energy -13.8471 kcal/mol@LB@Unfolding Energy - mRNA 3.32824 kcal/mol@LB@Unfolding Energy - sRNA 0.927997 kcal/mol@LB@@LB@Position - mRNA 186 -- 195@LB@Position - sRNA 44 -- 53@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 44 -- 50@LB@ |
16 |
0.003381 |
0.593 |
b0956 |
matP |
-12.11 |
0.015217 |
269 -- 280 |
42 -- 53 |
Ter macrodomain organizer matS-binding protein |
|
_____________268__________281\n_____________|____________|\n5'-UUU...CAUCG____________AAUCA...AAG-3'\n______________CGAAGGGGAGUU\n______________|:|||:|||:||\n______________GUUUCUCCUUAA\n3'-UUU...GGGCA____________AGUAA...ACA-5'\n_____________|____________|\n_____________54___________41\n |
274 -- 280 |
42 -- 48 |
-15.3716 kcal/mol |
2.33274 kcal/mol |
0.933904 kcal/mol |
268 281@LB@ | |@LB@5'-UUU...CAUCG AAUCA...AAG-3'@LB@ CGAAGGGGAGUU@LB@ |:|||:|||:||@LB@ GUUUCUCCUUAA@LB@3'-UUU...GGGCA AGUAA...ACA-5'@LB@ | |@LB@ 54 41@LB@@LB@@LB@Energy -12.11 kcal/mol@LB@Hybridization Energy -15.3716 kcal/mol@LB@Unfolding Energy - mRNA 2.33274 kcal/mol@LB@Unfolding Energy - sRNA 0.933904 kcal/mol@LB@@LB@Position - mRNA 269 -- 280@LB@Position - sRNA 42 -- 53@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 42 -- 48@LB@ |
155 |
0.03087 |
0.6177 |
b1003 |
yccJ |
-9.03 |
0.064630 |
130 -- 145 |
43 -- 56 |
uncharacterized protein |
|
_____________129______________146\n_____________|________________|\n5'-CCU...UUGCU_____UC_________AUGUC...GGU-3'\n______________CGUUA__AAGGGGAAU\n______________|||:|__|||:|||||\n______________GCAGU__UUCUCCUUA\n3'-UUU...ACCGG________________AAGUA...ACA-5'\n_____________|________________|\n_____________57_______________42\n |
139 -- 145 |
43 -- 49 |
-13.8314 kcal/mol |
3.84343 kcal/mol |
0.953958 kcal/mol |
129 146@LB@ | |@LB@5'-CCU...UUGCU UC AUGUC...GGU-3'@LB@ CGUUA AAGGGGAAU@LB@ |||:| |||:|||||@LB@ GCAGU UUCUCCUUA@LB@3'-UUU...ACCGG AAGUA...ACA-5'@LB@ | |@LB@ 57 42@LB@@LB@@LB@Energy -9.03 kcal/mol@LB@Hybridization Energy -13.8314 kcal/mol@LB@Unfolding Energy - mRNA 3.84343 kcal/mol@LB@Unfolding Energy - sRNA 0.953958 kcal/mol@LB@@LB@Position - mRNA 130 -- 145@LB@Position - sRNA 43 -- 56@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 43 -- 49@LB@ |
4 |
0.0002658 |
0.2138 |
b1040 |
csgD |
-11.06 |
0.024985 |
185 -- 199 |
38 -- 52 |
csgBAC operon transcriptional regulator |
|
_____________184_____________200\n_____________|_______________|\n5'-UUA...UAAAA____C__________CAUGU...CGC-3'\n______________AAAG_GGGGUUUCAU\n______________||||_||::||||||\n______________UUUC_CCUUAAAGUA\n3'-UUU...GGCAG____U__________AAAAA...ACA-5'\n_____________|_______________|\n_____________53______________37\n |
193 -- 199 |
38 -- 44 |
-14.3947 kcal/mol |
2.26766 kcal/mol |
1.0693 kcal/mol |
184 200@LB@ | |@LB@5'-UUA...UAAAA C CAUGU...CGC-3'@LB@ AAAG GGGGUUUCAU@LB@ |||| ||::||||||@LB@ UUUC CCUUAAAGUA@LB@3'-UUU...GGCAG U AAAAA...ACA-5'@LB@ | |@LB@ 53 37@LB@@LB@@LB@Energy -11.06 kcal/mol@LB@Hybridization Energy -14.3947 kcal/mol@LB@Unfolding Energy - mRNA 2.26766 kcal/mol@LB@Unfolding Energy - sRNA 1.0693 kcal/mol@LB@@LB@Position - mRNA 185 -- 199@LB@Position - sRNA 38 -- 52@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 38 -- 44@LB@ |
8 |
0.001474 |
0.5928 |
b1048 |
opgG |
-11.67 |
0.018726 |
159 -- 168 |
44 -- 53 |
OPG biosynthetic periplasmic beta-1 6 branching glycosyltransferase |
|
_____________158________169\n_____________|__________|\n5'-ACA...GCACA__________AGUGC...AAU-3'\n______________CAAAGGGGGA\n______________|||||:||:|\n______________GUUUCUCCUU\n3'-UUU...GGGCA__________AAAGU...ACA-5'\n_____________|__________|\n_____________54_________43\n |
162 -- 168 |
44 -- 50 |
-12.9473 kcal/mol |
0.352192 kcal/mol |
0.927997 kcal/mol |
158 169@LB@ | |@LB@5'-ACA...GCACA AGUGC...AAU-3'@LB@ CAAAGGGGGA@LB@ |||||:||:|@LB@ GUUUCUCCUU@LB@3'-UUU...GGGCA AAAGU...ACA-5'@LB@ | |@LB@ 54 43@LB@@LB@@LB@Energy -11.67 kcal/mol@LB@Hybridization Energy -12.9473 kcal/mol@LB@Unfolding Energy - mRNA 0.352192 kcal/mol@LB@Unfolding Energy - sRNA 0.927997 kcal/mol@LB@@LB@Position - mRNA 159 -- 168@LB@Position - sRNA 44 -- 53@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 44 -- 50@LB@ |
198 |
0.04148 |
0.6177 |
b1067 |
yceH |
-6.24 |
0.226874 |
185 -- 202 |
38 -- 56 |
UPF0502 family protein |
|
_____________184_________________203\n_____________|___________________|\n5'-GCA...CCGGC__C___________C____GAAAU...GUG-3'\n______________CG_UAAGGAG_AAU_UCAU\n______________||_:||:|||_|||_||||\n______________GC_GUUUCUC_UUA_AGUA\n3'-UUU...ACCGG__A_______C___A____AAAAA...ACA-5'\n_____________|___________________|\n_____________57__________________37\n |
188 -- 194 |
47 -- 53 |
-10.8881 kcal/mol |
3.47135 kcal/mol |
1.17918 kcal/mol |
184 203@LB@ | |@LB@5'-GCA...CCGGC C C GAAAU...GUG-3'@LB@ CG UAAGGAG AAU UCAU@LB@ || :||:||| ||| ||||@LB@ GC GUUUCUC UUA AGUA@LB@3'-UUU...ACCGG A C A AAAAA...ACA-5'@LB@ | |@LB@ 57 37@LB@@LB@@LB@Energy -6.24 kcal/mol@LB@Hybridization Energy -10.8881 kcal/mol@LB@Unfolding Energy - mRNA 3.47135 kcal/mol@LB@Unfolding Energy - sRNA 1.17918 kcal/mol@LB@@LB@Position - mRNA 185 -- 202@LB@Position - sRNA 38 -- 56@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 47 -- 53@LB@ |
25 |
0.004737 |
0.5992 |
b1093 |
fabG |
-11.25 |
0.022809 |
188 -- 202 |
38 -- 52 |
3-oxoacyl-[acyl-carrier-protein] reductase |
|
_____________187_____________203\n_____________|_______________|\n5'-UAC...CUUUA_________AA____GAAUU...UUG-3'\n______________AAAGAGGAA__UCAU\n______________|||||||||__||||\n______________UUUCUCCUU__AGUA\n3'-UUU...GGCAG_________AA____AAAAA...ACA-5'\n_____________|_______________|\n_____________53______________37\n |
190 -- 196 |
44 -- 50 |
-14.2885 kcal/mol |
1.96871 kcal/mol |
1.0693 kcal/mol |
187 203@LB@ | |@LB@5'-UAC...CUUUA AA GAAUU...UUG-3'@LB@ AAAGAGGAA UCAU@LB@ ||||||||| ||||@LB@ UUUCUCCUU AGUA@LB@3'-UUU...GGCAG AA AAAAA...ACA-5'@LB@ | |@LB@ 53 37@LB@@LB@@LB@Energy -11.25 kcal/mol@LB@Hybridization Energy -14.2885 kcal/mol@LB@Unfolding Energy - mRNA 1.96871 kcal/mol@LB@Unfolding Energy - sRNA 1.0693 kcal/mol@LB@@LB@Position - mRNA 188 -- 202@LB@Position - sRNA 38 -- 52@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 44 -- 50@LB@ |