CRISPRloci - CRISPR-Cas annotation

CRISPRloci provides an automated and comprehensive in silico characterization of CRISPR-Cas system on bacterial and archaeal genomes. It is a full suite for CRISPR locus characteriztion that includes CRISPR array orientation, detection of conserved leaders, cas gene annotation and subtype classification.

For articles describing the tool and webserver refer to the reference section below. Please cite us when using our tools.
For more information check the help page.

Try CRISPRloci with these examples:

DNA mode (input|result)
Protein mode (input|result)
Repeat mode (input|result)
Viral DNA mode (input|result)

Input Parameters

Sequence(s):

[clear]

>NC_005230.1_1 # 182 # 487 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.291
MCAYCMICFYDENFNSTLNSTSKYHQKHEKWDKEEGWKKWLNNLRLVISVFNAINLIKKW
LKVFPFAHILDELTKLYNKVNKLDRLKYLLNSWNTFYSSSA*
>NC_005230.1_2 # 706 # 1287 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.320
MTDFPWELKELEKRRLNIILEILEGREIIVIIDETGDPKKGKTTDYVKRQYIGNLGKIES
GIVSVNAYGYCDGVTFTLESKVFKPKERLKEGDKYKTKPELAVEIIKELEESGFKIKRVV
SDSLYGESHSNFISAVEELKIEYAVGIWSNHGVWLPKEAKVRANKWRRFEHIRWDGKQED
RYIREIVYGKKAQ*
>NC_005230.1_3 # 1399 # 1827 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.455
MTEPVKYLIDTNVISELRKQDRADPGVLAFFQQAQHLYLSVITIGELRRGVELIRHRGDV
QQANLLEEWLEIVIADYADHILDFTIFEAQVLGKLRVPNPHNALDKQIAATALSYGLTLV
TRNVKDFADTGVCLLNPFTGNQ*
>NC_005230.1_4 # 1799 # 2032 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.500
MANLIVRNIDEAVVVALKKRAGQHGISAEAEHRKILEQALLRLPRKPFAEVLRQIPNVGN
DSDFERIQDDRASQIFD*
>NC_005230.1_5 # 2399 # 2965 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.460
MKINRQGQAKVLTEQELHDLFTVGLLTPRDRLLFGICLYTGCRIGEACSLAWADITTDAM
TFRIEKTKTKSSRTVAISPALQVLFDEYRQAQQFVRFPSSYVFRGKRVGSHLHPSMAHKI
LKAATDRISVRGVSTHSFRRTALTMMCRKGINLRVIQKISGHKNLNVLSHYLEVSEQEKE
QALSTISF*
>NC_005230.1_6 # 3041 # 3364 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.343
MSRLTLRLPESLHQQLSHQASQEGVSLNQYIVYALTRQITQQYLVKPVLSEDIEKQQASF
LSLLNNLGTATSEDIQLVLEEREIVASEDELTPDIVAQFQQKIKTNS*
>NC_005230.1_7 # 3367 # 3591 # -1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.360
MLGKLLSLAEFTTIYFTWRPTSPDPGDDLIIDCAMNANAAIVISNIKDFRSAQQILGLQI
FTPVELILKLINNN*
>NC_005230.1_8 # 4241 # 5257 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.323
MISNFGHIVKTYLSNFPKDDYPVLDTFKFVSIWLGLVLDQSQTSMRSMFKRLNLRGETVD
ISTFSKASKKRDVGVFREIIFSLKKELSKRKEIKQGELEIFPLDSTIVSITSKLMWNLGF
HQVKVFSGINLSTGIPGGIVIHFGQGHDNKYGNETIEETPENGVAVMDRGFCDLQRIKRL
QKENNKYHVLRIKNNIKLEKLANDNYMVGTEKNKIESRVVIFTHDNSEFRLVTNLPIESK
EIEGVSDEKIAEIYKKRWQIELLWKFLKMHLKLNRLIAKNENAIGIQIYTCIIAYLILKL
LVIPKEAGTTMLDKLRYLQAFMCEKISYVHWLRELALR*
>NC_005230.1_9 # 5340 # 6284 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.415
MKFQYNSLTFAIEVLKALAKEPCYRKNLTEQLELFLEQHQQPADDVAQKLTRTIRKLRDC
GFEIESAPHRPYVLKKSNFPVILSADQRQALYLATHLLEQMGFSQQASQLQDICPLTEGD
RPRHLRADFNPPVDYSDIKTKEIITNLQKRLETACRFTIRYRNSLGKEALWDLDRSELRL
HNGSLYLFAYVPDILTQRIQKRPNIEQNVLFRIDRILSVNPSSNIHWLLSSFPTLKVQYR
MIGSLSKYKPRRHNETVINRNVEQNYVEIETNEDCLFWFRQRILQYGSNVQILTPQWLHQ
EIVEEHLKAIQSTK*
>NC_005230.1_10 # 6349 # 8517 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395
MSLPKVGAMKVQVKPLYAKLNEGLGQCPLGCQSVCTVREQAPEMQPPDGCSCPLYDHQAQ
TYALTTAGDTDIIFNRVATGGGKSLGATLPALLPKVHPDFRVMGLYPTIELVEDQYRQQQ
QYHQMFGLNAEKRVDRLYGAELARRISEKDSNRFQELLKSIEQKPVIQTNPDIFHYITHF
RYRDNARSQSELPMVMAKFPDLWVFDEFHIFGEHQMAAALNSLLLIRHATQSKRKFLFTS
ATPKTSFVESLKNSGFKIAEIQGEYSDRPQQGYRQILQNINLEFVHLKDTDTESWLLAQS
QNLRDLLHQEKNGRGLIIVNSVAAAGHLCRNLSKILPDVEVREISGRCDRQERQQTQTYL
QKSEKSVLVVATSAVDVGVDFKIHVLICESSDSATVIQRLGRLGRHGGFQQYQAYVLIPS
QTQWVIASLKEELEEDSSIDRLELSTVIETAFNAPQEFKQYQKIWGELQAQGMLYQMVYG
GSRSESKDNLAVTQDLRDRMIESLEKIYQKQINGFGRWWGLSNDAVGKATQEELLRFRGG
SSLQSGIWDGDRLYSYDLLKVLTYATVEVIDREIFLEAAQKLNHGIEEFPEQYLTGYFKI
TKWLDQRLNFSLFSTHSHLASCQLMLLDRLQLKGHIQPELSRCLGRRKYLAYLVPINRNN
PSSHWDISRKLRLSPLFGLYRLTDSGGNAYGCAFNHDALLLEALKWRLGDFCKQATSQSL
IF*
>NC_005230.1_11 # 8531 # 11458 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.407
MTTLLQTLLIRTLSEQKDYILLEYFQTILPALEEHFGNTSGLGGSFISHQKHFGTQGYDT
EKAKKMAQGFAKKGDQTLAAHILNALLTTWNVMQELEFPLNDIERRLLCLGITLHDYDKH
CHAQDMAAPEPDNIQEIINICLELGKRLNFDEFWADWRDYIAEISYLAQNTHGKQHTNLI
SSNWSNAGYPFTIKERKLDHPLRHLLTFGDVAVHLSSPHDLVSSTMGDRLRDLLNRLGIE
KRFVYHHLRDTTGILSNAIHNVILRTVQKLDWKPLLFFAQGVIYFAPQDTEIPERNEIKQ
IVWQGISQELGKKMSAGDVGFKRDGKGLKVSPQTSELLAAADIVRILPQVISVKVNNAKS
PATPKRLEKLELGDAEREKLYEVADLRCDRLAELLGLVQKEIFLLPEPFIEWVLKDLELT
SVIMPEETQVQSGGVNYGWYRVAAHYVANHATWDLEEFQEFLQGFGDRLATWAEEEGYFA
EHQSPTRQIFEDYLDRYLEIQGWESDHQAFIQELENYVNAKTKKSKQPICSLSSGEFPSE
DQMDSVVLFKPQQYSNKNPLGGGQIKRGISKIWSLEMLLRQAFWSVPSGKFEDQQPIFIY
LYPAYVYAPQVVEAIRELVYGIASVNLWDVRKHWVNNKMDLTSLKSLPWLNEEVEAGTNA
QLKYTKEDLPFLATVYTTTREKTDTDAWVKPAFLALLLPYLLGVKAIATRSMVPLYRSDQ
DFRESIHLDGVAGFWSLLGIPTDLRVEDITPALNKLLAIYTLHLAARSSPPKARWQDLPK
TVQEVMTDVLNVFALAEQGLRREKRDRPYESEVTEYWQFAELFSQGNIVMTEKLKLTKRL
VEEYRRFYQVELSKKPSTHAILLPLSKALEQILSVPDDWDEEELILQGSGQLQAALDRQE
VYTRPIIKDKSVAYETRQLQELEAIQIFMTTCVRDLFGEMCKGDRAILQEQRNRIKSGAE
FAYRLLALEAQQNQN*
>NC_005230.1_12 # 11524 # 12513 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.422
MLDSLKSQFQPSFPRLASGHYVHFLMLRHSQSFPVFQTDGVLNTTRTQAGLLEKTDQLSR
LVMFKRKQTTPERLAGRELLRNLGLTSADKSAKNLCEYNGEGSCKQCPDCILYGFAIGDS
GSERSKVYSDSAFSLGAYEQSHRSFTFNAPFEGGTMSEAGVMRSAINELDHILPEVTFPT
VESLRDATYEGFIYVLGNLLRTKRYGAQESRTGTMKNHLVGIVFADGEIFSNLHLTQALY
DQMGGELNKPISELCETAATVAQDLLNKEPVRKSELIFGAHLDTLLQEVNDIYQNDAELT
KLLGSLYQQTQDYATEFGALSGGKKKAKS*
>NC_005230.1_13 # 12674 # 13438 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392
MTKIYRCKLTLHDNVFFASREMGILYETEKYFHNWALSYAFFKGTIIPHPYGLVGQNAQT
PAYLDRDREQNLLHLNDSGIYVFPAQPIHWSYQINTFKAAQSAYYGRSVQFGGKGATKNY
PINYGRAKELAVGSEFLTYIVSQKELDLPVWIRLGKWSSKIRVEVEAIAPDQIKTASGVY
VCNHPLNPLDCPANQQILLYNRVVMPPSSLFSQSQLQGDYWQIDRNTFLPQGFHYGATTA
IAQDSPQLSLLDTN*
>NC_005230.1_14 # 13441 # 14229 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.369
MFDDRYSLYSVVIELGAAKKGFPTGILGRALHSQVLEWLKIGEPSLAEELHQSQISPFSI
SPLIGKRRSKLTEEGDRFFFRISLLNGSLLQPLLKGLEQQDKQIVMLDKFAFRLCHIHIL
PGSHSLARASSYALTTQAPTSSKITLKFHSATSFKIDRNTIQPFPLGDSVFNSLLRRWNH
FAPEELYFPSVSWQIPVAAFELKTYSVQLKKSEIGSEGWVTYLFPDQEQAKIASVLSQFA
FFAGVGRKTSMGMGQVSVNNHG*
>NC_005230.1_15 # 14222 # 14794 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.398
MDDYLPLAYLNAWEYCHRRFYLEYVLGEMEINEHIIRGNHLHRNINEAGTSVDGDTRIHR
QQWVWSDRLKVKGIIDAVEESDGLLIPVEYKKGKMGKHLNDHFQLCAAALCLEEKTGKSI
TYGEIFYYGNRRRQPVEFTQALRNMTEQAIIAAHLACNGPMPRPIANTKKCADCSLERLC
LPKELKKLTK*
>NC_005230.1_16 # 14804 # 15781 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.466
MSTLYLTQPDAVLSKKHEAFHVALKQEDGSWKKQPIPAQTLEDIVLLGYPSITGEALGYA
LELGLPVHYLTQFGKYVGSALPSESRNGQLRLAQFRAHEDPIQRLDIVKAFVKGKVHNQY
NLLYRRGQVDNPLKGRGKLVMRQQTLEQVRGIEGLAAREYFASWQEMLGHEWTFTGRFRR
PPTDPVNALLSFGYGLLRTQVTAAVHIAGLDPYIGFLHETTRGQPAMILDLMEEFRALVA
DSVVLTVLKQREIQRQDFTESLGAFRLTDSATKTFLGAFDRKLSSEFKHPIFNYKCTYRR
AIELQARLLARHLQEGVVYEPLVIR*
>NC_005230.1_17 # 15813 # 16097 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.404
MLYLIIYDVPATKAGNKRRTRLFDLLSGYGKWRQFSVFECFLSVKQFAKLQTAMEKLIKL
DEDAVCIYVLDENTVQRTITYGTPQPEKPGSIII*
>NC_005230.1_18 # 17411 # 17827 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.520
MGDLAGIWPPHVSVPIAGISRRKVESKWQRRKLIVSVPIAGISRRKVGGVGFFHHIWNVS
VPIAGISRRKDSDARFSPASSAVSVPIAGISRRKVDIVEELGLMEEVSVPIAGISRRKER
AGSGTGIRVYCFSPDRRD*
>NC_005230.1_19 # 18056 # 18313 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.543
MPALVSVPIAGISRRKARRRHYPGGKPEFQSRSPGLVEGKFHSQSLMTSLASWFQSRSPG
LVEGKPGFPYLSDGVTYSFSPDRRD*
>NC_005230.1_20 # 18853 # 19335 # -1 # ID=1_20;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.509
MPVSVPIAGISRRKVCREYHQFPPGSVSVPIAGISRRKVCREYHQFPPGSVSVPIAGISR
RKAEKGHHLSPKREFQSRSPGLVEGKTTRRSDLHQSTEVSVPIAGISRRKVGARPTKSRL
VGLFQSRSPGLVEGKPTFGSIRIRRWLKFQSRSPGLVEGK*
>NC_005230.1_21 # 20266 # 22182 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485
MPKLKKLTPKAEAQSESTSLDRLRELAQDPKLAKLVAANYMAPPDLLEELSHTSDKPLLK
ALVSNPNTPTEVLLKLGSLFPEQLLDNPVFDILLIENPNLLSEFPKSSLNSLLKREVAPV
SFLRWAATNGDENTLQSLLINPNVPAEVVQGLTEHGDWDVVIAAKLHVNSGVEVEPSWEE
QGLKRRVPEKENERVTDFFRYFWPELKDLVCLNYWIRRRIASHPNCPVDVLAQLALDDDL
DVRICVAKNPNCPVELRLKLLTQLALDDGCWVRICVAENPNCPVDVLTQFALDNNSYVRR
DVASNLNCPVEVLTQLALDDDYRVRRDVASNPNCPVDVLTQLALDNNSDVRIGITLNLNC
PVDVLTQLALDNNSDVRIGITLNPNCPVELRLKLLTQLALDNNSDVRIDVTLNPNCPVEV
LTQLALDDSYVRRGIALNLNCPVEVLTQLALDNNSDVRRGVASNPNCPVEVLTQLALDNN
SDVRRGVASNPNCPVEVLTQLALDNNSDVRRGVASNPNCPVEVLTQLALDNNSDVRRGVA
SNLNCPPADLIVDSFLEQFTKSSIPTYPRLIAFRSPHCPTGALAKNYRSRDWLERCAIAE
HPKTPDATLQKLLLDGNRLVRQKAQANLEQRQNIIPED*
>NC_005230.1_22 # 22328 # 24058 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.345
MTIYALEHPLRNVFSPKDYQFKIPEYQRPYAWTNDQAEEFWNDLINALDQKEEEEPEYFL
GSMVLVKSENKPEAEVVDGQQRLTTLTILFAVIRHHLSPSSTAYSKIENLFFEEDFDGQK
RPGLTTRKQDNQFFADNIYTPGGIENLIKQDSGFDSDSQIKMRDNAIFFDKQLKNKLKEI
SDQDKDQWLTKLLGNILKCCHLVVVSTNDFEKAYRIFSTINSRGLNLTHNDILKAEIISK
MDDGKKRKEYTEIWDSMEGDLGRSQFESLFAYIFRIEYQERPSKSILTEYRKRVLPKYEE
KYPKDHVFKFVDELLLPSSKVLEIINNQNFECEDLEIQDSINNYLGWLNLIDNDDWKAPL
ISFMIRYRNESTKLLKFLVELERYAAAIMFLRFDINARARAYRPVILATLESAGEAIDTL
EKALDIEKQDELIKKVLEGDIYKDKTRRKYILLRLDSALAESGQSESLKSKTLTIEHVLP
QSLTLEWKSLGWNEENHAIWVNRLGNLALLSQKKNSSGSNLSFEIKKKEYFQKKGSVTFP
ITTRILSYSTWTPAIVEQNQNFYIKTLKKVWRLSLM*
>NC_005230.1_23 # 24106 # 24495 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372
MSYKHYFSPKHKPEITQAITITEPAIIFRLNKTYSTNLSQQEIYDITRSDWILGHRREKA
EYGFAAFKGVVLQVYRIDRWDFSGKVTDVGRQRWFFEGKVATEMQDYINGNISHYFKKGD
RSPTKYLNC*
>NC_005230.1_24 # 24518 # 24886 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325
MNSPTFFEKGTTFYSKSDFNKALSQWYNKTDEVTIGDTSYSQASWIFIKLGMYDFQLNAD
TKRIGVFDYLQILKQYEQDLPWHIVENTRNSKINKAVFGEDFKKISGFYLYIKKALETTI
TI*
>NC_005230.1_25 # 24925 # 25509 # -1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.480
MVLGLNPGVGYPELQSRDGVWANRIRQTSFSKCFDRSPPGDQAWLKLHVKESPYWRSLMS
FGQRCCGNNFEFSQILNFELYPWHSSALTSALNCPPSIIDLYVFQPLAEVQTRHIFAFGK
PWDKVFQGLGLTEVRRYGDGFQPLPGVSTPGWTVVIFRSALMTVPIIVSWQQGYAGPPGK
PRLQALRAIIENEG*
>NC_005230.1_26 # 25642 # 25743 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.461
MSEHRNRVADFWDGYISAWLDGDNMFDAWLEKQ*
>NC_005230.1_27 # 25933 # 26043 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351
MALARFGFNSLGINAEDFQAPDQQEIKQLKEIQIFS*
>NC_005230.1_28 # 26004 # 26195 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.359
MLNQDFKEFIELLNKNQVKYLVIGGYAVAIHGHPRYTKDIDIWVEIGENYLWHWHGLDLI
VWG*
>NC_005230.1_29 # 26140 # 26328 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.333
MEKVVLKTTKQSQGNDFSYWQTQSYGKRLEALEQIRREYHQYKYNAEPRLQRIYRIVKQK
SG*
>NC_005230.1_30 # 26352 # 27608 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.488
MSDDCQALLSATRLRLRMQSPFFATLALFARYYVTEAIPTAGTEGKNIYFNPHYLAQLTP
AERDGLFLHELLHGALLHQSRRASRLPELWNIAADIVVNGMIVAEGKFVIPKGGLREPEL
EKYSVEEVYELLIKRESPPALPIADLLQEIPNLTTQSDSNNNDNDLNSNDSEPNGGQSSA
NSSKIHSHSQDDQEIHRNRLESPRHQEEQLAVHWRNAIQQATVVARSQFQGNLPEGLERH
LGEIGQPQLDWRTYLWRFLVHTPNDFQGYDRRFIHQGLYLEALVGESVEVFCCIDTSGSV
GDEEMGIFLSELRGIFGSYPQIKCWLWYADADCYGPYELDNLNAVPKPQGGGGTDFRPFF
TAVDEKWSREKQAVICYLTDGYGSFPDQAPPLDTLWVVSPGGKNSDGFPFGEVVRLRS*
>NC_005230.1_31 # 27605 # 28630 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.491
MTPVQLKNYLEQLVGNQIKTSTMIWGPPGIGKSSIVAQIAEEGKLRFIDLRLSQLAPTDL
RGLPVAIPTSKTKPQTGTSAWYPPEFLPKDGAGILFLDELNMAPPAMQGVAQQLILDRRV
GSYEVPTDWFIWAAGNRKEDRASVFEMPAPLANRFLHLDVQPDFESFKQYALEQKYHEQV
IAFLSFRPGLIHKLDLQRPAWPSPRSWAIANGLHQVNLDVSPAVGEGCAAEFSAFVQLYK
DLPDLEAIFRGQGQNIGFPTEPSSGYASTIGLAVRAKDATAGVNAFHWLTDKADSEWVQL
FVTDMAGQLRRAGHLGALSIMAKKEPKLKQFMQGYQELLAI*
>NC_005230.1_32 # 28650 # 28805 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.378
MPLRYKERCPGNEAVELESLLWVRFNQLCPELDAQKIIIYYAILRLFGSSS*
>NC_005230.1_33 # 28850 # 29353 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389
MVLKIELLDSRIHQRSDFYCGEASLDTYIQKQASQDLKRKIATIFVLVDNLDKKVLGYYT
LSAYTVNIAYLETDFAKGLPRYPMLPATLLGRLAVDQNYKGQGLGELLLIDALKRAWETS
QLIASLAVIVEALNDQASNFYIKYGFVPFNQQPSKLYLAMKSVERLF*
>NC_005230.1_34 # 29337 # 29639 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485
MTQITKSKALARLEARISPETKALMQKAAALEGRSLTDFVVASAQAAALKVIEQHQTLQL
TIADSQAFVDALLRPSEPNSKLKKAALRHQQIIEIDGVKN*
>NC_005230.1_35 # 29844 # 30008 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.564
MMLLRDWVPPGVDEAAYVKAGFLKAIAGVPGWSSDWASVCSADNVSLAMAVNLG*
>NC_005230.1_36 # 30352 # 30669 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.358
MNRDLASILDALIFARRIVTFTTNMTEENFFTDIKTQDAVMRNIAVLGEALRRISPEFRQ
TYSKIPYNQGNYLKLQDELFTGETIKSLGRNFLEFEANKSQETVP*
>NC_005230.1_37 # 30699 # 31040 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.427
MSRLYGDENFPMPVVQALRELGHDVLTCLDAGQADKAIPDEDVLAFAVAEQRAVLTINRK
DFIRLHLQNECHCGIIVCTFNADFLAQAKQIDAALEQISEPSNQLIRINRLQG*
>NC_005230.1_38 # 31037 # 31369 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541
MTSALQAIANLLPQLSGGERAQLLQWVAQDLGDLAPGVEVHPLVCGGEPCIVRTRIPVWV
LEQARRQGLNDGEILRCYPSLRAEDLVNAWAYVRRHRSEVEGQINENEAL*
>NC_005230.1_39 # 31641 # 31790 # -1 # ID=1_39;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.453
MEEELHRLKRDNQAADKSELVDFLLSEWVKSQKGEQATFHLGENVGQWE*
>NC_005230.1_40 # 31822 # 32097 # 1 # ID=1_40;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.507
MRPIQSGSLLLPVAGRPRLGDRALDFDSPSTEVVCGQNHHNEFPEVPIAFFGWRSPVSWG
EIEQGSMLDQGNIEVFERKPKERKPFPEQAL*
>NC_005230.1_41 # 32289 # 32483 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513
METGHSIALIAAQTPKTKETPHALDGTEGVPKVLKAHQPRAIGAFKLNFSNGKPQLAKFA
GGAA*
>NC_005230.1_42 # 32647 # 35523 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.506
MKVRPQHWQEWVNSGIAPEIIEANLKSLDNAYGWLLYSEKLPRRNDGRLSQGILTQYRHL
EQGGWYCSGLDAITLEDSQWGCFKPDQPRLSQEGKLIKYEHPPKTSTEAFCLKITRHQWR
QIAQKAGLECPDLEHIPNQEIAQSFWQWVKNNPAVPIIITEGAKKTASLLSYGYAALGLP
GIYSGYRSKDSEGIELVHKQLIPQLETFCQQGREFVFCFDNDNKPTTKHNVRKAIANTGC
LMELQGCKVTVMTWAGLAKGIDDVIVGNGETSLDRIYSARQSLEAHKLSEFTDLTPLISQ
IVNCRYLDQDILANVTSRLVGIKAAKGTGKTEALAQQVQQAIAKGLPVIVLTHREQLAKE
LAQRFGLPYRSELEFGAESFHGYVLCVDSLHPQAKPAFDSSRYPDALVILDEAEQVIWHL
LNSVTCQRNRPAILETLSQLLNGAGQIVLSDADLTRISLDYLHGLLTVQCAPWVLVNEYH
PASARKAFLYDAPEALFSDALECIQNGERLIIHTGAQKVSSKWGTINLETTLSGAFPELN
ILRIDAESVAEPGHPAYGVMGNLNAIIPLYDIVIASPTLETGVSIDVKGHFHRVFCFAPG
SQTAEAVCQSLARVREDLPRHLWIKKYSNQSIGNGSTIPKILVSSQQKLFKANSLLLGQA
DTIANLDGHCSRHMVTWARYSALHNHGFKKYRDVILSRLEAEGYSILSTDAPDDAKSVGE
FMKAYTEANYQQHCEKVAAAPLLDDLEFERISRARAKSEPERLSEQKTAISKRYLTDDIT
PELVSQDDKGLYGQLQLRYYLTLGREFLAERDTHRVKKLTKQTGEAFTPDINSTCYSAKV
KTLEIINIGQFLDGSAHTSESLRDWFEHICQFRDDIKAILNQSINPERDTPIAVAQRLLG
LMGLKMTGKQYRINGGRQRIYALVDSPPDDPAKIIMERWFERDSSRVPCHTSSLKELC*
>NC_005230.1_43 # 35644 # 35934 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.502
MKRLKGDPLWIRCLRRLGQWSNHRSDGGKEWQNRPLIIMRTIFLVNRIADVVTVASSHCQ
RRKRGFVKAIRALQLSEVTLPSLRVSWLGGVVLGLP*
>NC_005230.1_44 # 35891 # 36178 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.503
METLKTIPWDAADHLESREDMAAYLEAALEEGDPALILVALGDIARSKGMTLIAKETGLG
RESLYKALSANGNPEFVTVLKVMEALGLRLQATTL*
>NC_005230.1_45 # 36189 # 36533 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.464
MPASNTLSNLYLLGYNRGMIEIRQTETYARWFKSLRDCQAKARIDIRIRRLSLVNAGDVK
SVGGGVSELRINYGPGYRIYFTQQGEQLIILLAGGDKQTQSNDITIARDLAKEL*
>NC_005230.1_46 # 36597 # 36848 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.520
MEVRLKKWGNSIGLRIPHPLAISWGFDESTVVDLVETEQGLMIRKRSSPGSLEALLTSIP
ADFTYPGDVSDFVESEATGQEWL*
>NC_005230.1_47 # 36845 # 37201 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499
MTSTVPQYPERGAVIRLNLNPTQGREQMGEARPCLVLSHTAFNKARNGLIIVSPITNTIK
PEIQTLVVLPDGYRVQGSVIAEQIRTVDLSLRWWRDTGEVLPPSFVDQVLAVLQLIIG*
>NC_005230.1_48 # 37267 # 37521 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.490
MGTATRYTVSIARSGLRLRESRIIADLLLQKISDGDWQRKILEENVLQIGNVESIKRIAH
LLRSRIEPLGESLWLLIRDGDASH*
>NC_005230.1_49 # 37554 # 38138 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.480
MPKKLSVPEIRVTSSEQQGLFAQAADPITPLKEIDMNGATLMELEDIVKAAHQSFQSHLG
DALQAGLIAGKALLTAKQQFTYNRQTGGFRGWLERIEVSKSTAYRYIELATNEPIVSQAG
TLSEAMERLAQHRAEQRALKAGEEQVEVKKRRVTLKLSNERDQKLESIAKSRGGDVSALI
KEIVEQWLANEQDS*
>NC_005230.1_50 # 38131 # 38712 # -1 # ID=1_50;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.514
MKIVVFNGKGGVGKSTIAANLAVISASPLLDADPQATCCYWADRRGSNSPEVVDVSLGRV
AIRLKALERAIVDLPGASVPGVHDALSVADVVLVPVVYDQATLDALPATLELARNAHRPT
TMLLNRLHPRAHADGIVTSLAPLNVPICLTPVRERASHRDWWSQGLVAADFPDTDAGGDI
LQIWQWLQTQNYA*
>NC_005230.1_51 # 38992 # 39108 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.436
MARNWTINLSEEALTDQITDQIEQAKVREIAALYPPDQ*
>NC_005230.1_52 # 40015 # 40227 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.516
MTLTNPSNRRRHPPGSVQPHHHFRLRLILRVAGSLWLGVEGPHLLSLLSLHFLKLVQLLY
GSCPQQRKRV*
>NC_005230.1_53 # 40245 # 40544 # -1 # ID=1_53;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453
MISKVTVKELMQVLTYLKFRLNAAEQEELLADYLPFCETVEIPNPPPPTPLCRDPFDVPF
LVLALVGQADYLITGDKDLLELEEPFPCPIVALEQFLFK*
>NC_005230.1_54 # 40637 # 41368 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.523
MTNRMIETSPLVYARAAGLLYLIIIVLGLFAEIFVRSSIITPGDATATAGSILGAEGLFR
AGFLADSIMLLSDVALAVLLFTLLKPVNKTLALVALFFRLTQTAVIAVNLLNYYAAVLLL
KGPGYATIFGVAQLNSLSLLFLDLHSYGYDLGLILFGVHCLILGYLIAKSLYLPKAIGYL
VMAAGVTYLIGSYTRFLFPDFVGAVSPIYVVPIVSELSLCLWLLIKGVDLERWREVTGSA
GVV*
>NC_005230.1_55 # 41419 # 41640 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482
MLAKLTSKNQLTLPKSVTQQIGAAEYFEVTVQSGQIILTPVRIQRADAVRAKLALLDIIE
EDINNAVDWARQS*
>NC_005230.1_56 # 41845 # 42492 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529
MLIGYMRVSKTDGSQHLDLQKDALLAAGVKEDRIYQDCGSGRNSQRPGLEAGLKALQPGN
TLVVWKLDRLGRNLKDLVMIVEGLRQREVGFKVLAGAGAEIDTSTANGRLFFAVFAALAE
YEAELISERTRAGLQAARARGRMGGRPRKMDRVMLQMLMEAMKNPEACAKAVAQKLNIST
ATLYSYVNGDGTPKEAGLRLLRKAHGEQQESEGPR*
>NC_005230.1_57 # 43053 # 43646 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.495
MLITLEPTFYLRNHPLYYSPYDTLMITSIESPIKLSIPDEDFTIREVGFLHAYRLNLSFP
PDLLLTYADMLSDSVSNVADYFLGEGQSSCFPENVVSSAQQIIYIEDFYVEPQYRGRNIG
LKSLALFLQMLGQGAIVAGCPFPAGEEDSPGARRRQRLLIDYWSKLGLLCHCQKRNILWN
DNWQLPKWLEECLWHEI*
>NC_005230.1_58 # 43726 # 43992 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558
MALARWQFLSGGSHGWLLGRWGWFFASLSVPLPGHGQSQHSKEKADERVIHRPVQGPCAL
AAEVPLRYPPPGTRGPGGAQNAGGGWSR*
>NC_005230.1_59 # 44030 # 44320 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.515
MEKAEDNGVVPGLGNGIVEMPGLRINPAGDGKTKGQAVVSFSLQFLENVRGEDSGGVSAD
SKSLTELVIASLPLTKEDEVLIHNGELKGGAAQGIQ*
>NC_005230.1_60 # 44249 # 44419 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.485
MTSMVDMGMTISALEAHTPSIKNPGEVTFEDESSLNALGGTSLQLPIVDEHFIFLS*
>NC_005230.1_61 # 44777 # 45019 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.527
MLEETIAVTLAYLAVVILLMAPAQRTHSSKAPQGGRGAQSLCLKQLTIRELKQRARRAKI
RGYGSMRKVELLQHLLASPE*
>NC_005230.1_62 # 45124 # 45630 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535
MANSDFTLATFRIQASQWDSFKQWAKDRGNSASGELQHFIARVVQGDYVDPPALPEGLTT
RAELDETVAALEERLMAEIKSLQVRLDRHQLPDGAGQSTASPKEEKLTTTELAELLKRAG
IWKSKRTLQEYAQENRYPDDLPWRAHKSGGKWYWSELPAKGGAGLLSP*
>NC_005230.1_63 # 45712 # 46179 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.444
MQWSPFFHRTHRSINPVGGADSGHGSLSPFPLPHQGKAYHNPLSAVDSKNREERETYINW
YNAMPHQNFDYSELSPNVTLKLKVIVVMIKDLDLNEDFQLIGELLAEVFLNYLPAAKQKS
WVESELQGLMTFTEAMAYYLTEILGEEELISIERL*
>NC_005230.1_64 # 46499 # 46633 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.459
MLRKQSRTLSRSTLSDAGRTTNSNPRLRSSGYFSIDAHRPQEDS*
>NC_005230.1_65 # 46666 # 47040 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523
MVLILNNSRGIYVQEESFLLTALRLKSGKEINGSTVLLINAWGEFRPPFKLPVCVTPAEL
VQPLEEELEGALVIRRAASLCPEAPGLEGAVIPRVQQRVPLLYSTVDTVLFPSRTSMAST
PHPQ*
>NC_005230.1_66 # 47529 # 48242 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.391
MTRTLPPVFKTQATNRRKRTRHGSMQALRESVAKVKSFGYLDFTSWKINKDGYLFLTRGK
RSELFKLLENSGFFEFHETNISQDSVYQHQVSKFLATGYELYGRGYYARKGEVEIHHLDG
NQQNNDPRNLRYVSPGLNYFIARSLRFPYTGNQSNRITESAEEARNMLRLSLKRTLNVRG
KRFSQEQLDFLLSLRLEQARNILDEWYLAGNSYNNLINKRVEQFSLTMTTEGIVAQL*
>NC_005230.1_67 # 48431 # 48733 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482
MKDDRYPSEWAQLALQKKQSVNWACERCGVQCLKPGEGKGLSTGDRYRLRMAVHHCDYDP
GNNSPSNLKALCSPCHLYFHRRQRGNVIPGQLRLKFSFLI*
>NC_005230.1_68 # 48790 # 49434 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.454
MSTLQQFSQAPKPWSLDEFVEIVNGLLPQFLPEEKSHTRVREEMTSRLVRHYTGMGLLDE
PLKEGREARYLYRHLLQALLVRRLLVEGYGASAIDNLAKSKTNQELEALLQGGVVLTLTP
ANPALNFLQEIQQRSAKSAPAPSQSRKVGKADDSNLEKTALPTPSVWTRLVILPGLEVHV
RNDFLLPSTHQEQENLWQRILQSLSSIKKKRFNQ*
>NC_005230.1_69 # 49431 # 51197 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.481
MNTPQVSFIPLKNAVCSERAVTLDLIIRITPPSPPAMDQPRPSLNLGFVIDRSGSMEGHN
KITYARQAVCYAIDQLSPGDHLSVTIFDDQVQTLIPSTLVKDKAQFKRLVQGINPGGCTD
LHGGWLQGGIQVSQNLSAELNRIILLSDGLANRGETNPDIIATDVHGLAQRGASTTTLGL
GDDYNEDLLEAMARSGDGNYYYVADAEQLPTIFERELQGLAATYGNGVTLTATSQAGVQV
LDLLNDFELDNQGRYQLPNLIYGDSIDVVVRLKVPAIKEEQILGTVTLSWLDGERQKQTL
MVNLQLPVLTKVEFEALPSNQEVQQQVALMMSARAKKEAMERVDRGDYGGAGQVLQEARA
EIVGANLPMSAPEAAALEDLEQKLNQREYKSYRKMASAQNYRRNYQRSAGHSDLRYAFQK
GPRLGDITKEKAEAIVNSTDRNLSNSGALSRAIHQAAGPELLQACQDLQGCTVGGAKLTP
GFNLRANWVIHTVAPKWKGGNQGEEELLVSCYQNCLQLAVSQSIRSLAFPAIACGAMGFP
PEIAARIALETVSNFLLSNMAIGSVAFICADKETLQYYQEAFQRVVAW*
>NC_005230.1_70 # 51537 # 52805 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.465
MKIISFLGFNNYQTTTYVHPTNPEITCKTRFFQEALVDFYRPTEIYVLLTKTVATVAPRG
AEVTNWQGLQDCLADKVTIRPIEDIPEGSAPEDLWDIFDCITDCLDHGDRVIFDFTHGYR
FLPVVALLAISYLRTVRQVQVEGVLYGAFDPNSQGESSPTYDLLPMLSLLDWLAATDRFV
NLGDGLPLAQLLQTAIPGAERRDNPEVRNPGSRLDQAGKVIAEISQAIALARPMETLELT
VQLEEIINRASDSFDQRAKPFNLIKDQLLAEYGQFALPESWEPENLQRNLWLQFQLINWY
LQRGQAVQAMTLASEWLISVVAFRLGAKQILDHRKQINFALNNGGAVQKKREPVGPSSFD
EQFQALSQYQFLSQLWNDLTEIRNDLAHCGMRKDPKSAKKLQEKANKIFPQLEEIANSLL
KQ*
>NC_005230.1_71 # 52881 # 53996 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377
MPNVIVSPCGTSLLTNQIDDSLRKLINRNSNLKEAEISSEDKAQIDRHYQQRSQELNEED
IEGAKKLSAELNGILTYSKGQISTSDHYYLIATDTYVGGLTATLVTDWIQSHQGNAFLTI
IRDLSTKEIETFRLAMSEIVRWCDYELNNQYPQPAWKRIFNLTGGFKSVNGFLQALAMFY
ADESIYIFESDGQLLTIPKLPIKLSPEDDLANNLDIFRRLAILGHEIPANECQNISGALL
EQVDGRASLSEWGQLVWQQFSGGHYQNQLLPPLTSKLKYSEEFVIDIQSLPRDRLAIINA
RLDDLTRCLESNGEYNPRSLRFHSLEGRLFRGRLSPEPTHECYAWSDKDAKRIYGHFEDN
VFIIDKLGLHL*
>NC_005230.1_72 # 54005 # 56392 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.417
MTVGTLGVVGSAKNLKLQLSFINTRQQYVQITLFERNSFKVAEEEFSTELVEIIKTALPT
LKNKKVEFEEDGDQIKQIREKGQAWVGAAEQIAPYVLPSGNITETPRNVNASNFHNPYNF
VPALPRDGITGDLGDCAPAGHSYYHGDKYSGRIAVKLTTVTPLLIPDASKEEINNNHKTY
PVRIGKDGKPYLPPTSIKGMLRSAYEAVTNSRLAVFEDHDSRLAYRMPATMGLQMVPARI
EGDNIVLYPGTSRIGNNGRPANNDPMYAAWLPYYQNRIAYDGSRDYQMAEHGDHVRFWAE
RYTRGNFCYWRVRQIARHNQNLGNRPERGRNYGQHHSTGVIEQFEGFVYKTNKNIGNKHD
ERVFIIDRESIEIPLSRDLRRKWRELITSYQEIHKKEVDRGDTGPSAVNGAVWSRQIIAD
ESERNLSDGTLCYAHVKKEDGQYKILNLYPVMITRGLYEIAPVDLLDETLKPATDKKQLS
PADRVFGWVNQRGNGCYKGQLRIHSVTCQHDDAIDDFGNQNFSVPLAILGQPKPEQARFY
CADDRKGIPLEDGYDRDDGYSDSEQGLRGRKVYPHHKGLPNGYWSNPTEDRSQQAIQGHY
QEYRRPKKDGLEQRDDQNRSVKGWVKPLTEFTFEIDVTNLSEVELGALLWLLTLPDLHFH
RLGGGKPLGFGSVRLDIDPDKTDLRNGAGWRDYYGSLLETSQPDFTTLISQWINAFQTAV
KEEYGSSSFDQVTFIKASGQSLQGFHDNASIHYPRSTPEPKPDGEAFKWFVANEKGRRLA
LPALEKSQSFPIKPS*
>NC_005230.1_73 # 56394 # 56954 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.424
MKNLYHYHQYEITLESAVDSCKNHLQAAIGLLYSPQKCELVKLDNSGKLVDSYNRLKFNN
LGVFEARFFNLNCELRWVNESNGNGTAVLLSESDITLTGFEKGLQEFITAIDQQYLLWGE
PAKHPPNADGWQRLAEARIGKLDIPLDNPLKPKDRVFLTSEEYIAEVDDFGNCAVIDERL
IKLEVK*
>NC_005230.1_74 # 56954 # 58522 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.442
MARKVTTRWKITGTLIAETPLHIGGVGGDADTDLALAVNGAGEYYVPGTSLAGALRGWMT
QLLNNDESQIKDLWGDHLDAKRGASFVIVDDAVIHIPNNADVEIREGVGIDRHFGTAANG
FKYSRAVIPKGSKFKLPLTFDSQDDGLPNALIQLLCALEAGDIRLGAAKTRGLGRIKLDD
LKLKSFALDKPEGIFSALLDQGKKLDWNQLKANVTYQSPPYLGISITWNPKDPVMVKAEG
DGLAIDILPLVSQVGSDVRFVIPGSSIKGILRTQAERIIRTICQSNGSEKNFLEQLRINL
VNELFGSASLSQKQNGKDIDLGKIGALAVNDCFSSLSMTPDQWKAVENATEMTGNLQPAL
KQATGYPNNISQAYKVLQPAMHVAVDRWTGGAAEGMLYSVLEPIGVTWEPIQVHLDIARL
KNYYHGKEEKLKPAIALLLLVLRDLANKKIPVGYGTNRGMGTITVSQITLNGKALPTELE
PLNKTMTCPNLTDLDEAFRQDLSTAWKEWIADPIDLCQQEAA*
>NC_005230.1_75 # 58527 # 60902 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.424
MRGIEITITMQSDWHVGTGMGRGELDSVVQRDGDNLPYIPGKTLTGILRDSCEQVALGLD
NGQTRGLWHGWINFIFGDQPALAQGAIEPEPRPALIAIGSAHLDPKLKAAFQGKKQLQEA
IAFMKPGVAIDAITGTAKKDFLRFEEVVRLGAKLTAEVELNLPDNLSETNKKVIAGILAS
GAKLTERLGGKRRRGNGRCELKFSGYSDQQIQWLKDNYQSVDQPPKYQQNKLQSAGDNPE
QQPPWHIIPLTIKTLSPVVLPARTVGNVVECLDYIPGRYLLGYIHKTLGEYFDVSQAIAA
GDLIITNATIKIDGKAGRATPFCLFGEKLDGGLGKGKGVYNRFQESEPDGIQLKGERGGY
VGQFEQEQRNLPNTGKINSELFTHNTIQDDVQRPTSDVGGVYSYEAIIAGQTFVAELRLP
DSLVKQITSKNKNWQAQLKATIRIGQSKKDQYGKIEVTSGNSADLPKPTGNNKTLSIWFL
SDILLRGDRLNFNATPDDLKKYLENALDIKLKERSDNDLICIALRSQRTESWQVRWGLPR
PSLVGWQAGSCLIYDIESGTVNAEKLQELMITGIGDRCTEGYGQIGFNDPLLSASLGKLT
AKPKASNNQSQNSQSNPLPTNHPTQDYARLIEKAAWREAIQNKALALASSRAKREEILGI
KIMGKDSQPTMTQLGGFRSVLKRLHSRNNRDIVTGYLTALEQVSNRKEKWSNTSQGLTKI
RNLVTQENLIWNHLDIDFSPLTITQNGVNQLKSELWAEAVRTLVDAIIRGHKRDLEKAQE
NESNQQSQGAA*
>NC_005230.1_76 # 60905 # 62581 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419
MFLVLIETSGNQHFIFSTNKLRENIGASELTYLATTEILFQGVDRVFQTNYYDQWSDTNS
LNFLADSKLNPAIDDPKNNADIEILLATSGKAIALVKEEGKAKQLIKEVTKQALINAPGL
EIGGIYVNCNWQDKLGVAKAVKEAHKQFEVNRAKRAGANGRFLRLPIAAGCSVSELPASD
FDYNADGDKIPVSTVSKVKRETAKSAKKRLRSVDGRLVNDLAQLEKSFDELDWLAVVHAD
GNGLGQILLSLEKYIGEQTNRNYIDKYRRLSLALDNCTINAFKMAIAVFKEDSKKIDLPI
VPLILGGDDLTVICRGDYALEFTREFLEAFEGQTETHDDIKVIAQKAFGVDRLSACAGIS
IIKPHFPFSVAYTLAERLIKSAKEVKQKVTVTNSSPITPFPCSAIDFHILYDSSGIDFDR
IREKLRPEDNTELYNRPYVVTAAENLSQAQGYEWSQAHSLQTLADRVSYLRSEDGEGKSA
LPSSQSHALRTALYLEKNEADAQYSLISQRYKILKNFAEDGENKSLFHLENGKYVTRFLD
ALDAKDFFANANHKNQGE*
>NC_005230.1_77 # 62911 # 64011 # 1 # ID=1_77;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.510
MDLKSLAGAEMVGLRWQLRFDRPCRLESHYVKGLHAWFLHQVQAIDPDVSAWLHDGQGEK
PFTISRLIGPTLWQEGHWHWQINKTYHWQLNLLSGALIEALQPWLARLPNKIVLARQTLW
VEAVDCYLAPHNYQQLWPQGALPRRQEFTFTSPTSFRRQGNHYPLPEPRNVLQSYLRRWN
DFSGLAFEPEPFLDYWVPQNVVIDRHWLESVKTTAGKQGSVVGFVGAVSLVLTPQARNDG
DDYGRLFHALCRYGPYCGTGHKTTFGLGQTMAGWATPDLKTFACLQEDLQTQVLTQRIDQ
CASLLLAQRQRTGGQRAQEICHTLATIFVRREQGESLQEIALDLQLPYETARTYSKRAKR
ALANVQ*
>NC_005230.1_78 # 64005 # 64319 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.451
MKIIITAKGALLRNLATALVNGAITLTILLIAPLGLLAVITNTVLIMISTFVVNSFGDRV
VQWVLKPETMGAQIGYGEQTNVNKENLLPGQGLPQSRDQGPRNY*
>NC_005230.1_79 # 64316 # 64690 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.435
MENPNQYQNYAQQMDKEKSERLVRKTLYISRRAIWVNILLSILISYVAGYIHTRRWKALG
IVVVGTFVFGFLTASENESLEEAVERGITLSPLFGLIGTIDNSLAIRRARQTVANGNVDA
PGNQ*
>NC_005230.1_80 # 64822 # 65832 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.496
MTSIYLTEPGTKVSYHNQQLQIKQKSRQVITRLAEIDLLVLFPGVQLTDVAIAVLMDQGI
ETIFLRRDGQFRGRLQGQFATNPLTRIAQYRVLDSTFGTALAQRLILGKVTNQRAILQRR
HRDTGKKNNALAEAIDLIGAYRLSLRSGLGNSSRDQLMGIEGICAKHYYQVFQFCLPEGW
SFTGRNRRPPKDPVNALLSWGYGVLLARVFSAIVQAGLDPYLGFFHATQPYRPNLALDLM
EEFRPVVVDQAIVRLLRSGILDPLDFEPSYDGLGIWLGITAKKLFLTELESILQTSFLYS
PQSRRLKLQQIILEQARCLGRCCLESSLDYEPFTLS*
>NC_005230.1_81 # 65842 # 66123 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.443
MDFWLVCYDVRDDKRRRKLAKLLEQRCQRVQYSVFECPLPEKVLTDLLHRRWLKELNLKE
DSLRAYPLQRQSRSQAKIFGSPDLYEPPDFLIL*
>NC_005230.1_82 # 66223 # 66567 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.426
MPNPTVEIKLEDILVSIQKDLNELKVSQAEIKGQISALDEKLTGQINALDERLTGQIKAV
DEKLTGQIKTLDEKVSGIGKRLENQEFLNRGILTALIVALIAGAAKLFGWLPTS*
>NC_005230.1_83 # 66610 # 66864 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.451
MPTIETDLKEILTKIDDHLGKIDDRLGRLETGQARMEEKLGNLDSRVEKLEDSQSKQIWT
LIGIIGTTVIGVMIRYVLTALPNP*
>NC_005230.1_84 # 66936 # 67976 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.492
MSILRYEENGIEFFTVQATGESGMSQSGLARLCGVDEKSIRVVLKSVRSSSCSNFLKPLQ
NIELTVRNSYHEFKNVTILRDTVCAHILEWYAFESQRPNETARQAFRKFASMGIRTWIQG
ITGWEQGTEALTLEPEAKKTTADLGKIKTELEQLEHSLLVALKHRHAIHNIVEQPTVVDL
TLQQIIHTAVHVQAKTLNEALKQLALLRHWFTEWDFSALMDANQISQHNQFWEEVGTLRA
ENEALTRRLAILQAQRSNLPYTSPEQAKMNLEERIEWLTQALLTHQKRPDGDRAKKICRL
QATILARYEAGESLKAIAQELELDYETARTYVKRTRANLRLQVVMS*
>NC_005230.1_85 # 69353 # 69757 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.578
MWRGFQSPDGEKRVLNEHHLDAHHSGCPLFQSPDGEKRVLNVEELTSSYAQMHEFQSPDG
EKRVLNSGWLAVPVLVDFGSFQSPDGEKRVLNCRPSAGGNSSPPRFQSPDGEKRVLNCPA
PACPATSRPAVSVP*
>NC_005230.1_86 # 72878 # 73459 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.471
MNLSHPTPLTPRFGDALVLANQLHAQQFRKGSPVPYISHLLGVTALVLEMGGNEDEAIAA
LLHDAVEDQGGEATLNVIREKFGETVAQLVLGCSDSSTVPKPPWEERKQQHLQKMSRISL
AVLKISLADTLHNARTIEIDLHRYGNDIWQKFSRSKSGIIWYYQSLWQIYQDRNPNPWSN
ELIDIINGWAYGK*
>NC_005230.1_87 # 73483 # 74928 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.423
MESTFEYSPTVPLLSHLLQGKSLKNPINLGKAIRLWVLLRCIYGHESDPIYCHLNESFTY
PEWRDAFFLEQKLFHQNFNRDSLEHSNNQCPCHKSIHQWLFADYLATDQQQWYEDFRGTC
YLAEDADIQGFLDTLSWERSKSNDGKNRLFACVPRTINNNLKELVKLGYLEKIGDKFHKL
EEIDFSSLAQSKPVDANFNFPNLSYIRHEDLSEIPDLFRATMGQKQRFFMHVDYVVAKRD
LDNDWPYRFQQLWQENEFPILRLEYDSVSLHRLVKRITYPVCIYYYQRALYLCAYGQDPK
DRNKLDWYNYRLDRIKAMANLDWSDPEIPLPLQEQYQQQNLFTADYIDTQLSRGFGFDFY
KPLKTMVLRFNQDFSERYIDESFRHETFKKFDTVQQLSTWLGQQQLQPTEKEQLQRAIKQ
WQAQGKQEPTHSYFRMDYRDQDNNVIMRLRAWGPNVEVLFPLDLRQRMASDVQAMAALYS
H*
>NC_005230.1_88 # 75157 # 76089 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.520
MVSYHLHLRENTLYVGFNREQSASGDRLVRDAASQIDQLIRQGQLTGGELLKVDGPQSVA
IAYVLAQRLTPLYGAIAILDPKVCRPGHRVYIVAISRNADYPLGSLIEVPIGGSALLKVA
VCGFPQTGKSCLIEGIRQAICSQIGAPYPYVIRACPDGEGAWLHQTQVNNPALAENLRAQ
NKRDWNATFAETAADWVRSANEAINLIDTGGLPSPENRLIMAEASHAIILYKTVAEREQW
LNFCQDLGLPPLAIVESRLGNASDEVNLSTKDQPITGVVYGLSRGKANLRDKLMIQAIAH
RLIDLTSSEK*
>NC_005230.1_89 # 76204 # 77592 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472
MVSIHITRHAIQQLRKLRSAMNNRVIPDIFEQLSLGMNAGNHILRHSQCTEYRKRRLEGG
GYLRLFFDDHSPSHYKVIAAVLRDDDTYKREFDDLPRDPCYGWNGETGWEWDWYINEGYL
YSAQPSDQQIRDTNEAVKTDNYHRNDGNNHPDYHRVPYHSTIDQSAPGTGKTLNAAEKAC
ELAYVGQNVVFLLPEALIDQQVTKYRCIRQSLQEPAGENLFIGTFHQWLAKAFPQLPFQV
ASPAKELQVLQEIAQQHRHWQTSGRDPITYRDVLLYQLYVINKNCREDDVFWDNKPRIEE
LRDIRPQWWQGAWTQEELCRRDYTLQVLQYFQQNPPAPPTPSWGTSIIIDEAQDYLVEEI
EIIKHLCHHWQTEAKHPVNLWLLGDINQRIAPVDFTWGGLQLNKTRELQWDNYRTTESIL
TLANRFQARADASKPADAKWLPKPTDPKFCFEKPGDAVKLLV*
>NC_005230.1_90 # 77599 # 78591 # 1 # ID=1_90;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.452
MTTAETFLDPLVATISQQISEWQEKHSLQWRLAARARLFCSDHYHVSPDRVKFLEFMPVS
QAKGREFDSCIAFCLFDLPQNGGRMEAYTKWYTQLTRARSRLLIVTTEAQLAQMGEEIFE
NLTITKGEKTVNAVERLNYQNPKEVTDALGWITELTSSLDTSATGRQGLREIILEGALQS
DPILYYDLYYVLKSYDISSQETMAIEADIVNLLFNNAELQAPLKAYFEQPEVEEVPRLQT
LIYRCLGQSWQAAEIAQSRKQSDPGTYQEVMAGIQQDLQHRHLPLEADRLARFYGLETST
NKFDNASWFKTSDKLIPLLKNWTEEQLKVG*
>NC_005230.1_91 # 78642 # 79775 # 1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.443
MTSQNFVSDQDTITALQQLTDLIHQGLQQAWDPNIITQAKAEINQTAEQCKEQFHTIHQD
VEDLQGSLLEIDQRSGQLTDSIVTAEKVTEVITKMGGPDQLRQDFDRLEQLRSITGQIGE
AQAMAQQLQQQTEQLRTDGDRLGQTLTQLGGADALLAQLAQLEEIASQLAGLDSHIDQVT
TAIIDRYLPSFEAGKEQIAQWRSEVKDQLNLTLASLEQQKQEINGLIADLTTQSGQVSSQ
LTDLEQQQLKLEPLLTAIAKLADQLGGQDLLQKVATDLGLLDETIAQQQRELVSLKTDLR
AEFQRMFNQELEQFKNEQLQVNQRLLVENRQLKEEITKISQELNYNADQLRRLQAIKCDR
PVWTLSNLRRPTPPYLP*
>NC_005230.1_92 # 79821 # 80048 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.360
MASLVEIKEDLYVQLQGINVADKHGRDMEIQHYQQLHKCIELIEELETELVKCELMKGQT
FEGVYKETLERPGEV*
>NC_005230.1_93 # 80203 # 82140 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.404
MEKPRPQKPQPPLSPNPGGKDKNSPKKKVITTPVSGGGKKAGGGSGGNQPPSPWLNPQTS
PNPAKIASFVEYLRWMRPADHQYKDATKVQILQKAMENAKNYDARLSVCNQRTKAIAKET
FEVTCPWRIRVGGHRGPESILLPAFDALGMPYIPSATLRGVARTQAIREVMQNTGKNWKD
AEKDSLIVKHFGALDADKADQAGKVVFLDAYPTSGKCLAVDMANNIWSWEGNHLDYSPNP
NPFLSLKEPTFLIGLRLISNCSDQQVLTQVKKWLINGLANGAGSQINTGYGQLLENPKKL
LSKPFLEVEFALEGQLIHGYQKPGEWSWNNNKNEWQMRGSNQAEVRPTAFKSMLRYWFRV
FALGVMPPKNTKVLEAKIFGSLDPQSMGIIKVTVLEKEPENENEQSGTLRLFFTSEVDEN
QKDNLQNLFSNLIWLMFYLGGIGQGARRPCYYRKGNPKIRGSSFFVQNPSEFSSIPGNID
EFRLRILGKITQLIDLLSLLKTTFNFTERSNNFNHSSHQWTECADLNMRIFVVPNANQDN
AKSYALSKLNQKFHQLDDQIKSLKKEKNFPELKRVYSELKSLCGGVQKDKILVNGQQKER
KVLPSPIWVRSLGPFDVVTIFGATASPRSDYLRSLQGAIQIFPLS*
>NC_005230.1_94 # 82196 # 82591 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.432
MPNFDPRTINKQAFQSLQALRHQAGQDNALLKEQKNQAMELYTYLSTWGLMRLKAEEVAL
SQTGKKQVVQRFFNDLGTLSGRNNLADSQGLNTLVALSANEYLGLTGLGIELANEFGFWA
NAVYHDITGAQ*
>NC_005230.1_95 # 82630 # 83409 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.451
MNIQHLYLLSPLHTGGTTQEGNLLGIARESHTNFPYIPSSTIRGRLRAAVDDNKRDALFG
NDLNSDNGNLTQGSVWVGDGSLLWLPVPSLSHGVIWISCPLLLNRYARVANVAAQPAIVP
YLCNFYQANEKVYLKDAIFDHSELNQWSQAEVKKFIPNQSNMTIERALVLPDQHCATVIQ
MGLWRQVKIKLDQHKTVDGGFRYEEAIPPDTLMYFPWGITAQAKGNQEAGEQFQDLLTVN
EIMQIGGQESLGRGFVECF*
>NC_005230.1_96 # 83501 # 83881 # 1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.378
MDLAVSKIQLSNPSQNHLQALTVEALADSETVHLCIPDHIQIQLQLEIVDQKEVTLADGS
RRLIPYVGPIKIKFENRIGFAGALVMGDQVLLGAIPMEDMDLIIIPSERRLAVNPHSPNI
ATSIAK*
>NC_005230.1_97 # 83905 # 85017 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.517
MYWYSLTPLDILLLRDAKPFTPGDRAWAGSIFPPNGHTLAGAVRSLLPQNQTISLIGPLL
YHKETLYFPRPLGFVGKTPLLPLPWHDATSPLRSQMLWDKTQPAPLAPLETVSQTDIKRD
EKQARTWLPLDVMMGYLQTGAIKPEDWARPEDEDSQPWTMESRPHNSIEAGTRQVKESDG
YFVENGIRLKENWSLAIAVDPTTHQQLQSLPQPLSMRLGGEGHRVTLVHRPALDQQWQRL
QTLSDQNYQQRQKAIAYLMTPGIFERGRDGVSTCRPYPWEWKLTHNQGSFISMATDRAVA
ISPRIRDRQRNPGHSIPAPQVFAAPPGTVYYLNQPQGLFADQDNAPKHLQQTRKLGYSHL
LWVNLQEVNR*
>NC_005230.1_98 # 85199 # 88138 # -1 # ID=1_98;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.483
MSEVYWQAKIWGLLHDPALKALHNNSGRGGEGAWQSLGCMQNWVSPKSSTEKKDGELSNS
WLDHIGLSDLIASASDRGAIHYIGTPIDYDGKGLELSHLLSGAKLPLKLANHSEIIGQGN
RRTYLEQKELELIQQMPAEFLHGTDKAQECFWWLWRCLPEAVAEQFGPESLLMPAETRLP
DASIWSHGSMTAALAGALAGYDTNIEDIAKGARNTPKSQAYLAVFTFSPIQELIKASRKI
KDFWAGSWILHYLSAKVCWELAQQYGPDCFLYPSLYGQPLIDHWLLEKYGEQGFSQWVPQ
PGDRQLLTAGFPNVIMLVLPKEKVSAAMQSAKNHLLNAWRNIAHLVFAELQQRHWQKQLN
PTDPTWKHWLDAQWQTYWSAMAIGAEGKTLKSVGIPTQTPESKAQRDQWVREQNEAFSAS
LFAQEELDFIEKSTDLFIQQRNRNYAGSLNVGSWWADIFGQTRFTLSAVKNARNWKIPTA
FGPRSTISGLGPVVHPQAPSHQRDWVTEGDTQKYWQRQAGLFDGSEQLNATETVKRGLEK
VLPALLGRGAKELKTYYPDLTVGIAGYLKTQPDGLPIFEQACSAISQKILGDRHKVADSV
TQDWGIPWVEENMEKKYHPRLLNSGWLVEELEDLDQTELPSYRQALQTEIEKFYPQNNPT
SWYVLAAGDGDGMSEWLKGTKMRTYGDYFPQVLTVPEDLQPTFQPFSEQPKRMGPATHNA
LSRALLDFSNQLVPYLTEQRYAGRLIYSGGDDVLAYTNLWEWDQWLWDIRQAFRGDRDEH
REFDSTGHYWHSKTAHKNLPQRPLFTMGDGATISFGITIAHHSVPLAIALEHLWEAEEEA
KEHEYGEGEDKKSKDAVQVRVIYGNGNVLTATSKFEVFKTWKDLLDIETIDASTYETAAT
VLEQHPIPVREAIMPWVNVLVERRDALDKDQQSTLRSRLACFLIQLWQTTSQKNWEKEAK
NWLKVAAFMKRNRYIKFPN*
>NC_005230.1_99 # 88253 # 88546 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.466
MGISPLEQPPHHNITKNTEHESRTGHQQGIDNHRRQTQRGNKQNHQSDQTIGNGQDKIAG
KEKSGRGIHATGHSEESCRNFNSPNHKNSMKFFKHKY*
>NC_005230.1_100 # 88627 # 89616 # 1 # ID=1_100;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.443
MKTLYVSQSDCYVSLRKEFLLVKRQDRILAEVQLPFLEQVLIFGKAQVTTQAIHACLSRN
IPILYLSRMGFCYGRIIAIERGYRHLSRYQQELGWQQRLITARTIVAAKIKNARVFLQRQ
HRKHPTPSLQLAIDGLKHFVELTVKADKLEQLLGYEGTAANLYFQAWADCIENSNFIFFG
RSRRPPGNPVNAMLSFGYQVLWNHLLTLIELQGLDPYQACLHQGSERHAALASDLIEEFR
VPIVDSLVLYMINRRLIDVGEDFVFQNGGCFLNSSGRRKWLGAFVGRMEEFLSFDQGDFP
RWHCLIDQVKKYKAFIYSPSNSYSPFLIR*
>NC_005230.1_101 # 89620 # 89898 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.405
MFLYVIAYDIPDDRRRKKMADLLEGYGQRVQYSVFECTLSKSKFNELQKRLRKIYQSEED
SLRFYPLSGHTLTQVDIWGEPPLTKPPGSVIV*
>NC_005230.1_102 # 91478 # 91633 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.423
MSFMLRKRKKRSVSNQLISPTSGDRNLKSGLEAAQVGGFQSINFSYEWRRD*
>NC_005230.1_103 # 91899 # 92000 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363
MEEDVIGASKTVSNQLISPTSGDLPMVKSLKKK*
>NC_005230.1_104 # 92687 # 92830 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.493
MATAMGVISVSNQLISPTSGDWTKPRRTGTTPRSVSNQLISPTSGDN*
>NC_005230.1_105 # 93265 # 93654 # 1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.508
MNSIFTINPYWTGSTWAFDAAEVGLLGEPFVSGADAILSAIVKRELALETEQGSQFELIF
SAEGFPSYHACFERQEPEYGGYWYKVVDAGNDYQDLDFGDRGWLCPATLHFFPGGHPEKL
YIQVRAINK*
>NC_005230.1_106 # 93673 # 94188 # 1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.436
MTSVFHVLIGCPASGKSTLAAHLHQAIPQSQIISTDQIREDLFGDAATQGVWALINNEIS
TQITQAIAAGKQIIYDATNAEKAWRSELLGSLKKLDDLKIIGWYLQTPLEVCYQRNKNRL
RQVPEDVIETYAIALEQSPPSKDEGFTELHRIPYNQLENIDFSQLRSQWKN*
>NC_005230.1_107 # 94246 # 94611 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.464
MTTCINNSLFTIEPYWVGRTWAFDAPNLGVMAEPFVAGTNIVLTQLAKTRLGIEPSDGAK
FQLIFSAQKFPGLHLSFRRQEPEFDGYWYISESQDWAWFSSAMTSFFSNGHPEELHLQVL
R*
>NC_005230.1_108 # 94718 # 95344 # 1 # ID=1_108;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424
MIKQLSLFDIYPNGSPEEIIISDGHLQLYHSIFSDVEASRYYDRLEKEICWQQDSIILFG
KSQPLPRLTAWYGDPERSYTYSGIAMEPTPWIPLLQTIKTKAETLAKATFNSVLLNFYRT
GTDGVSWHADDEPELKKNYPIASVSFGGTRRFLLKHKTDPTIEKVELILTSGSILLMLGT
TQEYWLHQVPKTKKFVEPRINLTFRFIQ*
>NC_005230.1_109 # 95369 # 96241 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419
MYDALLPIVMDSYGQNSRCMPSFLSGLQPAVKELRQRYRTNNVQVDYGQPQIQAAYLLTY
YPYYVQQTHHNLSLASQHHHVAHLLRQRNLQVTLLGSGPMPEAAALATYRQKLQFASSLK
AISYDLNVHQWRSACQITARLMADLAPNITYKYEGHPLNLAQHHALFPAQWNIQNSQLII
IQNCLNEIYRANLGAFKQNMQFLMNNMAPGSALLLSDLDYHQTSRCLQLLKQLADATPGI
TTVFDHGDRLLKYENSFSLPFSIRRHLLTGQNGLIPKKWIRQFSLCLLKQ*
>NC_005230.1_110 # 96348 # 96938 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372
MTDFKALIESKLSSLLGKEIKVTDKAKECLQRLAESEQNFYSWHLKLLSIIFDVSPEIWD
ILKEVDEGFNNFNYAVLDAQVRDYFVKNESTPTVICDQISDFDDFLATLFFKAANTGGLG
VVYTSPPPSKAEIIQDTITIDHLVGMLFYVLYAGYYESDLAVALLIMNNFDIAFGRNNRR
YLDELENIMTKTELRS*
>NC_005230.1_111 # 97173 # 98522 # 1 # ID=1_111;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.504
MTINTDAILITDGDRQQVRDLIQWLKTNRPDLVEKARNPDILQQEQDHAQTFRGKIEQLQ
KLVPGFTYVHPDSLHGHYHVTPDLKKSAKATAVVMTTSNWIDTVGNLPVFFFAFKSLTFL
PALGMAVLLSIPVLAASNALSTAVAHGHKGRWKLAIAALVFGLIPLNILQTVTTGIGMEV
INNQSALAQVAAGDALDNIVEAKQQNLQFAETNLHPDIAKCEEGRQELEAMPRRNAMEEK
AFQSRYVRLYGTFSSQSQPMTVPIEQLPLCVRANRIQAEQQDQLQQLGQQLQDFKLERQT
LGNDLMFLKQMAPQQYGKTFVEVRPFWGLGGGEPTVEVRNGLELVSLGVNSFQTKFATGQ
WDQLGISLFFVGISAITSAASVAMGISFPLGKDTQRSYDESHKEKVNRFFQRARMTLTQM
HDEQQQELLEPGADDDNLLEDDYEFGRYN*
>NC_005230.1_112 # 98500 # 99015 # 1 # ID=1_112;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.481
MSLADITDFSEALALLGLYEREVMTTGVMEYVVPPKVPAKPAPVPDSVASPSPPNEQASS
HPPANIPQDTPALPEATPTSSPVNNTTINEGIIIVNGVHDSEDGNEPPSQIQKVDASQET
LPLPTPGPSELELLLEQQQVEKRLFYLFVEEIEKTGDLGKLPVALQPTGKS*
>NC_005230.1_113 # 99125 # 100141 # 1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429
MKKLLKSLKWPALFVGIILLLAACHRAPTRTAKETDKMKGVWLTDVGTMGLTYSTLLDET
LHHISKSDYDRVYFSVYGLRGQLYPTRQRGDLIPKLPFPNAVGSMARESRRQGLKPYAWF
EYGLMLPQFDPVAKNNPDWLLTMANGEQVIENHGVPMVWLDPSNPEVEAYILAHIDDILK
EKSLAGIQLDDHWAVPRQFGDYRRSLTALTTKVHEHIKTKNPEFELSLSPNPYQFSLNEY
NQDWLRWVKQGIVDEVVVQIYRSSPAEVQQAVNNSGIYTASRYVPVGVGLYTGRKIKPFN
LQSIKDQINAVEKQNLGHSLFVWEFMVLRVINIHLNIL*
>NC_005230.1_114 # 100246 # 100632 # -1 # ID=1_114;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.393
MQLKNDYHREVFNGDQGTITAIEREEQILTITYDDRPVDYDFADLNEIDLAWAISIHKSQ
GSEYPVVILPLYMQHFLLLSRNLFYTGLTRAKRLALVIGSQKAIGYAVRQQKERYRYTRL
ADRLVISP*
>NC_005230.1_115 # 101134 # 101628 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.368
MLRELIKLYGSQAIVYIDESGFEAIQACIYAWSKKGKKVYGDRQGKRGVRENLVAGRRKG
KKDLIAPMVFTGSLNAEGFEGWLKLYLLPSLDIPSILIMDNAPIHRKTAIKELAKEAGHE
VLFLPKYSPDLNDIEHDFSALKRARMYAPIDTSLDEIIRSYCGV*
>NC_005230.1_116 # 101524 # 103302 # -1 # ID=1_116;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.452
MSRAKELTTVVGNFANIQAGQTLKLAGIWKEHPKYGSQFQVNNYHETKPATLTGIEKYLG
SGLIKGVGPVTAKRIVAHFGLETLEIIEGESDRLMEVTGIGKKRVRMIQRAWAEQKAIKE
VMLFLQGHGVSTTYAVKIYKEYGDDAIRVVTHNPYQLADDIFGIGFLTADKIAQQVGIDP
TSKFRYRAGILHTLGEAAEQGHCYLPQPELIKAAIAKLSTEEYEAMAEALLAVIEEMVAV
QDLIREILSEEEILLFKPTFYHTECKLAGYVKQKLVNSQIIDIDRVKTWINRYTDKNELE
LSKQQYTAVLLAATTGVMILTGGPGTGKTFTTRTIVALWRAMGKKIGLAAPTGRAAQRLG
EMTGLEAKTLHRLLEFDPNSMGFKRNEDNPLPFDAVIVDESSMLDLFLAHSLLKAISPNT
QLLLVGDIDQLPSVGPGSVLGDLIASEQITMVRLNQVFRQAAASAIIRHAHQINRGQYPP
MEAISDQPLSDCLWHNGGTEPDHGVQLIGELLTDFIPKQGFNLLQDVQVLCPMQRGIIGA
RNLNAVVQSIVVSNKAETLNATVRTDNFIKRRVNRSVHSSSFQGTKVMLNII*

Sequence type:

Single Genome DNA (FASTA format)
Single Genome DNA (GenBank format)
Protein sequence(s) (FASTA format)
CRISPR repeat(s) only (FASTA format)
Virus DNA/RNA sequence(s) (FASTA format)

Genome information

DNA sequence completeness:

complete partial

[+] Parameters concerning Cas genes [-] Parameters concerning Cas genes

ML model to run:

classification model
regression model
combination of both

Select the classifiers:

CART SVM ERT

Max. number of contiguous gaps in a cassette:

[+] Parameters for CRISPR repeat input [-] Parameters for CRISPR repeat input

Hit sensitivity (e-value threshold):

[+] Parameters for Virus DNA/RNA input [-] Parameters for Virus DNA/RNA input

Hit sensitivity (e-value threshold):

Description:

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Main Menu

Freiburg RNA Tools

Interaction Prediction

Seq-Str Alignment

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Sequence Design

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