Input and runtime details for job 7437261 (precomputed example)
Input
Job ID 7437261 (server version 4.3.0)
Job Submitted & Queued | @ Mon Aug 08 10:13:07 CEST 2016 | ||
metaMIR Started | @ Mon Aug 08 10:13:09 CEST 2016 | ||
metaMIR Finished & Post-Processing | @ Mon Aug 08 10:13:45 CEST 2016 | ||
Job Completed | @ Mon Aug 08 10:13:45 CEST 2016 |
DIRECT ACCESS: http://rna.informatik.uni-freiburg.de/RetrieveResults.jsp?jobID=7437261&toolName=metaMIR ( 30 days expiry )
Description of the job
example1
An example of a standard analysis in metaMIR, where the prediction is conducted such that all genes are potential targets for down-regulation by the returned miRNAs.
Output download complete results [zip]
Result table
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Sort by selecting a column name.
Rows: 1-10
11-20
21-30
31-40
41-50
51-60
61-70
71-80
81-90
91-100
101-110
111-120
121-130
131-140
141-150
151-160
161-170
171-180
181-190
191-200
201-210
211-220
221-230
231-240
241-250
251-260
261-266
all
miRNA | Final Score | Positive Combo | Positive Score | Positive Group | Positive List |
---|---|---|---|---|---|
hsa-miR-561-3p | 1.53 | APC,AXIN2,FZD3,GSK3B,LEF1,LRP5,LRP6 | 1.528 | 7 | L1 |
hsa-miR-6513-3p | 1.52 | AXIN1,DVL2,GSK3B,LEF1,LRP6,TCF7 | 1.52 | 6 | L1 |
hsa-miR-646 | 1.51 | APC,AXIN1,CTNNB1,DVL1,DVL3,FZD3,TCF7,TCF7L2,WNT1 | 1.508 | 9 | L1 |
hsa-miR-148b-5p | 1.5 | APC,BAMBI,CTNNB1,DVL2,GSK3B,LRP6,TCF7L1 | 1.504 | 7 | L1 |
hsa-miR-1246 | 1.49 | AXIN2,CTNNB1,DVL3,GSK3B,LEF1,TCF7L2 | 1.486 | 6 | L1 |
hsa-miR-4708-5p | 1.49 | AXIN2,FZD3,FZD6,GSK3B,LRP5,LRP6,TCF7 | 1.486 | 7 | L1 |
hsa-miR-548at-5p | 1.48 | CTNNB1,FZD3,FZD6,GSK3B,LEF1,LRP5,TCF7L2 | 1.484 | 7 | L1 |
hsa-miR-1291 | 1.47 | APC,DVL3,FZD3,LRP5,LRP6,TCF7L2,WNT1 | 1.473 | 7 | L1 |
hsa-miR-622 | 1.47 | AXIN2,CTNNB1,FZD3,LEF1,LRP5,LRP6,TCF7L2 | 1.467 | 7 | L1 |
hsa-miR-3688-5p | 1.47 | APC,AXIN1,FZD6,GSK3B,LRP6,TCF7,TCF7L1 | 1.466 | 7 | L1 |
Result table - repPos
The table is empty.
Result table - clusterPos
The table is empty.
Job resubmission
usability assessment
When using metaMIR please cite :
- Jason A. Davis, Sita J. Saunders, Martin Mann, Rolf Backofen
Combinatorial ensemble miRNA target prediction of co-regulation networks with non-prediction data
Nucleic Acids Research, 2017, 45 (15), 8745–8757. - Martin Raden, Syed M Ali, Omer S Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen C Lott, Mostafa M Mohamed, Alexander Mattheis, Milad Miladi, Andreas S Richter, Sebastian Will, Joachim Wolff, Patrick R Wright, and Rolf Backofen
Freiburg RNA tools: a central online resource for RNA-focused research and teaching
Nucleic Acids Research, 46(W1), W25-W29, 2018.
Results are computed with metaMIR version 1.0.0 using R 3.2.1