Freiburg RNA Tools
GLASSgo - sRNA Homolog Finder
BIF
IFF
GLASSgo

GLASSgo - sRNA Homolog Finder

GLASSgo (GLobal Automated sRNA Search go) combines iterative BLAST searches, pairwise identity filtering, and structure based clustering in an automated prediction pipeline to find sRNA homologs from scratch. The web server provides predefined parameter sets for a non-expert usage as well as enables a manual setup of the query parameters. The returned GLASSgo result is in FASTA format, whereby the first entry represents the input sequence.

Precomputed results for IsaR1 from PCC6803, IsaR1 from PCC6803 (adapted parameters), and IsaR1 from PCC7424.

For articles describing the tool refer to the reference section below. Please cite us when using our tools.
For more information check the help page.

Try GLASSgo with these examples:

Sequence Parameters

?

Search Parameters

?
?


?
?
?


Structure-based clustering

?


?

? Description:
? Your Email:
(optional)
(optional)

When using GLASSgo please cite :

Results are computed with GLASSgo version 1.4.3