CLUSTAL W --- LocARNA 1.9.1 --- Score: 1699519

                   .........................((.((((..........)).)).))..........((......((....))...........))...............................
DroMel_CAF1        GGUGCUAUAACUUUUAAAUAGCUAGUCUUAUACUCCCGAAAGUAUUACGAAAAUGUGAAGAUCCACCUAAAUAUUUACCAGAAAAUGAUCUCCAUUUAAGCCGAUUCACUUUACCAAACU
DroYak_CAF1        AGGACUUUAACUUUCAGAUAGCCAGUCUUAUACUUCCGAGAAUAUUGAGAU-AUGGGAAGAUCCACCUGAAUACUCACCAGAUAAGGAUCUCCACCCAAGCCGCAUUGCUUUACCAACUU
                   .........................((.((((..........)).)).)).-........((......((....))...........))...............................

                   .........................((.(((((.......((((..((((((((.((...........................)).)))))))).)))).......))))).)).....
DroMel_CAF1        GGAAAAUUCUCCGAUGAAUGCUAAACACAUUUCUCACACACCUGAAAUUUUGCUCAACCGGAUCGUUGGCCAUAAUGGCAGCGGUUCAGCAAGAUACAGGCGCGAAUGAAAUGUGUUGCC
DroYak_CAF1        UGCAAAUCCUCCGAUGAAUGCUAAACAAAUUUCUCACACACCUGAAAUUUUGCUCAACCGGAUCGAAGACCAUAAUUGUAACGGUUCAGCAAGAUACAGGCGCGAAUGAAAUAUGCCGCC
                   .........................((.(((((.......((((..((((((((.((...........................)).)))))))).)))).......))))).)).....

                   ...........................................-------.....................
DroMel_CAF1        AAAGGACUUUGGUGUCAACGAGGACGAAAUGAAUCACCAUGUA-------CCACCACUGAAUCAGCACUUG
DroYak_CAF1        AAAGGACUU-GGACACAACCAGGAC-AAAUGAAUCACCAAGUAGAUAUGACUAGCACUGGAACUGCGUG-U
                   .........-...............-...........................................-.