Freiburg RNA Tools
CopraRNA - Results
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IFF
CopraRNA 0420453

Input and runtime details for job 0420453 (precomputed example)

Input Parameters

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100
? Minimal rel. cluster size0.5
? Iterative organism subset analysis (beta)no

Job ID 0420453 (server version trunk)

?Job Submitted & Queued@ Mon Oct 27 19:32:32 CET 2014
?Processing Started@ Mon Oct 27 19:32:36 CET 2014
?CopraRNA Finished & Post-Processing@ Mon Oct 27 21:39:09 CET 2014
?Post-Processing Finished@ Mon Oct 27 21:39:09 CET 2014
?Job Completed@ Mon Oct 27 21:39:17 CET 2014
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de:80/RetrieveResults.jsp?jobID=0420453&toolName=CopraRNA ( 30 days expiry )

The job description you specified

OmrA

Output download complete results [zip]

Downloadable files

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heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs sampled p-values
1 1.115e-06 0.004222 b2324 mnmC -15.39 0.000620 43 -- 54 3 -- 14 fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme   0
2 4.555e-06 0.00862 b2474 tmcA -12.78 0.009727 57 -- 105 4 -- 57 elongator methionine tRNA (ac4C34) acetyltransferase   0
3 2.033e-05 0.02565 b2438 eutK -13.57 0.004663 203 -- 217 1 -- 16 putative ethanol utilization carboxysome structural protein   0
4 0.0001132 0.1012 b4476 gntU -15.84 0.000345 91 -- 150 2 -- 58 gluconate transporter low affinity GNT 1 system   0
5 0.0001337 0.1012 b1108 ycfP -14.39 0.002014 1 -- 42 8 -- 48 putative UPF0227 family esterase   0
6 0.0002503 0.1579 b1040 csgD -12.56 0.011823 127 -- 140 2 -- 15 csgBAC operon transcriptional regulator   0
7 0.000509 0.267 b2665 ygaU -14.21 0.002424 290 -- 299 51 -- 60 uncharacterized protein   0
8 0.0006026 0.267 b3176 glmM -12.84 0.009187 220 -- 233 1 -- 14 phosphoglucosamine mutase   0
9 0.0006349 0.267 b3030 parE -10.41 0.061543 15 -- 27 46 -- 58 DNA topoisomerase IV subunit B   0
10 0.0007957 0.3012 b2231 gyrA -16.33 0.000172 185 -- 243 2 -- 55 DNA gyrase (type II topoisomerase) subunit A   0

Details of Selected Interaction Download Interaction Details

mRNA

sRNA

		

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Results are computed with CopraRNA version 2.0.1