Freiburg RNA Tools
CopraRNA - Results
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IFF
CopraRNA 6146272

Input and runtime details for job 6146272 (precomputed example)

Input Parameters

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100
? Minimal rel. cluster size0.5
? Iterative organism subset analysis (beta)no

Job ID 6146272 (server version trunk)

?Job Submitted & Queued@ Mon Oct 27 19:31:30 CET 2014
?Processing Started@ Mon Oct 27 19:31:36 CET 2014
?CopraRNA Finished & Post-Processing@ Tue Oct 28 03:01:45 CET 2014
?Post-Processing Finished@ Tue Oct 28 03:01:46 CET 2014
?Job Completed@ Tue Oct 28 03:02:14 CET 2014
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de:80/RetrieveResults.jsp?jobID=6146272&toolName=CopraRNA ( 30 days expiry )

The job description you specified

GlmZ

Output download complete results [zip]

Downloadable files

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heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs sampled p-values
1 0.000252 0.4883 b2341 fadJ -13.22 0.017677 15 -- 50 62 -- 89 fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase   0
2 0.0003068 0.4883 b1041 csgB -13.65 0.013155 183 -- 201 151 -- 168 curlin nucleator protein minor subunit in curli complex   3
3 0.0004017 0.4883 b3960 argH -14.26 0.008660 196 -- 221 23 -- 49 argininosuccinate lyase   0
4 0.0006637 0.6051 b2196 ccmF -9.95 0.132073 54 -- 67 25 -- 39 heme lyase CcmF subunit   1
5 0.0009486 0.6898 b0116 lpd -9.23 0.194039 158 -- 167 148 -- 157 lipoamide dehydrogenase E3 component is part of three enzyme complexes   0
6 0.001175 0.6898 b0241 phoE -14.91 0.005444 225 -- 249 92 -- 119 outer membrane phosphoporin protein E b0929 b2215 b1377 0
7 0.001397 0.6898 b4348 hsdS -18.42 0.000338 162 -- 231 13 -- 60 specificity determinant for hsdM and hsdR   3
8 0.001513 0.6898 b0081 mraZ -18.24 0.000394 160 -- 192 15 -- 50 RsmH methytransferase inhibitor   0
9 0.001833 0.7428 b0951 pqiB -16.08 0.002272 40 -- 76 1 -- 39 paraquat-inducible SoxRS-regulated MCE domain protein   0
10 0.002849 0.9373 b1476 fdnI -12.42 0.029854 172 -- 186 78 -- 92 formate dehydrogenase-N cytochrome B556 (gamma) subunit nitrate-inducible   2

Details of Selected Interaction Download Interaction Details

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Results are computed with CopraRNA version 2.0.1