91 |
0.009339 |
0.3104 |
b2562 |
yfhL |
-11.62 |
0.063873 |
146 -- 160 |
6 -- 20 |
putative 4Fe-4S cluster-containing protein |
|
_____________145_____________161\n_____________|_______________|\n5'-AGC...UCUGA____A__________AUAAU...UUA-3'\n______________GUAA_GAAUGCGCGU\n______________:|||_:|||||||||\n______________UAUU_UUUACGCGCA\n3'-UUU...ACUAC____G__________GAAAG-5'\n_____________|_______________|\n_____________21______________5\n |
154 -- 160 |
6 -- 12 |
-16.8242 kcal/mol |
3.96482 kcal/mol |
1.24244 kcal/mol |
145 161@LB@ | |@LB@5'-AGC...UCUGA A AUAAU...UUA-3'@LB@ GUAA GAAUGCGCGU@LB@ :||| :|||||||||@LB@ UAUU UUUACGCGCA@LB@3'-UUU...ACUAC G GAAAG-5'@LB@ | |@LB@ 21 5@LB@@LB@@LB@Energy -11.62 kcal/mol@LB@Hybridization Energy -16.8242 kcal/mol@LB@Unfolding Energy - mRNA 3.96482 kcal/mol@LB@Unfolding Energy - sRNA 1.24244 kcal/mol@LB@@LB@Position - mRNA 146 -- 160@LB@Position - sRNA 6 -- 20@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 6 -- 12@LB@ |
92 |
0.009361 |
0.3104 |
b3652 |
recG |
-7.88 |
0.265686 |
265 -- 278 |
7 -- 20 |
ATP-dependent DNA helicase |
|
_____________264_____________279\n_____________|_______________|\n5'-CAA...ACUUA________C______AAAAU...UGC-3'\n______________GUAACAAA_UG_GCG\n______________:|||||||_||_|||\n______________UAUUGUUU_AC_CGC\n3'-UUU...ACUAC___________G___AGAAAG-5'\n_____________|_______________|\n_____________21______________6\n |
266 -- 272 |
13 -- 19 |
-11.4583 kcal/mol |
2.34189 kcal/mol |
1.23906 kcal/mol |
264 279@LB@ | |@LB@5'-CAA...ACUUA C AAAAU...UGC-3'@LB@ GUAACAAA UG GCG@LB@ :||||||| || |||@LB@ UAUUGUUU AC CGC@LB@3'-UUU...ACUAC G AGAAAG-5'@LB@ | |@LB@ 21 6@LB@@LB@@LB@Energy -7.88 kcal/mol@LB@Hybridization Energy -11.4583 kcal/mol@LB@Unfolding Energy - mRNA 2.34189 kcal/mol@LB@Unfolding Energy - sRNA 1.23906 kcal/mol@LB@@LB@Position - mRNA 265 -- 278@LB@Position - sRNA 7 -- 20@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 13 -- 19@LB@ |
93 |
0.009444 |
0.3104 |
b3822 |
recQ |
-7.42 |
0.310549 |
176 -- 212 |
9 -- 45 |
ATP-dependent DNA helicase |
|
_____________175____________________________________213\n_____________|______________________________________|\n5'-CGC...CUGUU________A__CAA__________AU______CAG___GAAGU...UUA-3'\n______________UUUAUUUC_GG___UC_GGGGUGA__GUGGCG___GCG\n______________||:||:||_|:___||_|||:|||__:|::|:___|||\n______________AAGUAGAG_CU___AG_CCCUACU__UAUUGU___CGC\n3'-UUU...UUUUA________A__UA___U_______AC______UUA___GCAGAAAG-5'\n_____________|______________________________________|\n_____________46_____________________________________8\n |
192 -- 198 |
23 -- 29 |
-25.6556 kcal/mol |
8.78202 kcal/mol |
9.45193 kcal/mol |
175 213@LB@ | |@LB@5'-CGC...CUGUU A CAA AU CAG GAAGU...UUA-3'@LB@ UUUAUUUC GG UC GGGGUGA GUGGCG GCG@LB@ ||:||:|| |: || |||:||| :|::|: |||@LB@ AAGUAGAG CU AG CCCUACU UAUUGU CGC@LB@3'-UUU...UUUUA A UA U AC UUA GCAGAAAG-5'@LB@ | |@LB@ 46 8@LB@@LB@@LB@Energy -7.42 kcal/mol@LB@Hybridization Energy -25.6556 kcal/mol@LB@Unfolding Energy - mRNA 8.78202 kcal/mol@LB@Unfolding Energy - sRNA 9.45193 kcal/mol@LB@@LB@Position - mRNA 176 -- 212@LB@Position - sRNA 9 -- 45@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 23 -- 29@LB@ |
94 |
0.009498 |
0.3104 |
b4198 |
ulaF |
-10.74 |
0.090813 |
136 -- 150 |
6 -- 20 |
L-ribulose 5-phosphate 4-epimerase |
|
_____________135_____________151\n_____________|_______________|\n5'-GUC...CAGAA________A______GAUUG...GCG-3'\n______________GUGGCGAA_GCGCGU\n______________:|::|:||_||||||\n______________UAUUGUUU_CGCGCA\n3'-UUU...ACUAC________A______GAAAG-5'\n_____________|_______________|\n_____________21______________5\n |
137 -- 143 |
13 -- 19 |
-18.1084 kcal/mol |
6.12954 kcal/mol |
1.24244 kcal/mol |
135 151@LB@ | |@LB@5'-GUC...CAGAA A GAUUG...GCG-3'@LB@ GUGGCGAA GCGCGU@LB@ :|::|:|| ||||||@LB@ UAUUGUUU CGCGCA@LB@3'-UUU...ACUAC A GAAAG-5'@LB@ | |@LB@ 21 5@LB@@LB@@LB@Energy -10.74 kcal/mol@LB@Hybridization Energy -18.1084 kcal/mol@LB@Unfolding Energy - mRNA 6.12954 kcal/mol@LB@Unfolding Energy - sRNA 1.24244 kcal/mol@LB@@LB@Position - mRNA 136 -- 150@LB@Position - sRNA 6 -- 20@LB@Position Seed - mRNA 137 -- 143@LB@Position Seed - sRNA 13 -- 19@LB@ |
95 |
0.009629 |
0.3104 |
b0781 |
moaA |
-11.57 |
0.065137 |
257 -- 279 |
1 -- 21 |
molybdopterin biosynthesis protein A |
|
_____________256_____________________280\n_____________|_______________________|\n5'-ACG...CUGUC___U__C_________AA_____GUUGC...CGG-3'\n______________GAU_AC_GAUGUGUGU__CUUUC\n______________|||_||_:|||:|:||__|||||\n______________CUA_UG_UUACGCGCA__GAAAG\n3'-UUU...UACUA___U__U________________-5'\n_____________|______________________|\n_____________22_____________________1\n |
266 -- 272 |
6 -- 12 |
-18.6522 kcal/mol |
5.82624 kcal/mol |
1.25763 kcal/mol |
256 280@LB@ | |@LB@5'-ACG...CUGUC U C AA GUUGC...CGG-3'@LB@ GAU AC GAUGUGUGU CUUUC@LB@ ||| || :|||:|:|| |||||@LB@ CUA UG UUACGCGCA GAAAG@LB@3'-UUU...UACUA U U -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -11.57 kcal/mol@LB@Hybridization Energy -18.6522 kcal/mol@LB@Unfolding Energy - mRNA 5.82624 kcal/mol@LB@Unfolding Energy - sRNA 1.25763 kcal/mol@LB@@LB@Position - mRNA 257 -- 279@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 6 -- 12@LB@ |
96 |
0.009671 |
0.3104 |
b0941 |
elfG |
-12.70 |
0.041082 |
222 -- 232 |
5 -- 15 |
putative fimbrial-like adhesin protein |
b3145 b0533 |
_____________221_________233\n_____________|___________|\n5'-UUU...GAGAA___________AUUAC...GGC-3'\n______________AAAUGCGUGUC\n______________|||||||:|||\n______________UUUACGCGCAG\n3'-UUU...UAUUG___________AAAG-5'\n_____________|___________|\n_____________16__________4\n |
226 -- 232 |
5 -- 11 |
-17.0283 kcal/mol |
3.13128 kcal/mol |
1.19708 kcal/mol |
221 233@LB@ | |@LB@5'-UUU...GAGAA AUUAC...GGC-3'@LB@ AAAUGCGUGUC@LB@ |||||||:|||@LB@ UUUACGCGCAG@LB@3'-UUU...UAUUG AAAG-5'@LB@ | |@LB@ 16 4@LB@@LB@@LB@Energy -12.70 kcal/mol@LB@Hybridization Energy -17.0283 kcal/mol@LB@Unfolding Energy - mRNA 3.13128 kcal/mol@LB@Unfolding Energy - sRNA 1.19708 kcal/mol@LB@@LB@Position - mRNA 222 -- 232@LB@Position - sRNA 5 -- 15@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 5 -- 11@LB@ |
97 |
0.009805 |
0.3104 |
b1306 |
pspC |
-10.74 |
0.090670 |
128 -- 139 |
7 -- 18 |
psp operon transcription co-activator |
|
_____________127__________140\n_____________|____________|\n5'-CCG...AGCAA____________AACGU...CGG-3'\n______________AACGGAUGCGCG\n______________|||::|||||||\n______________UUGUUUACGCGC\n3'-UUU...UACUA____________AGAAAG-5'\n_____________|____________|\n_____________19___________6\n |
133 -- 139 |
7 -- 13 |
-18.5075 kcal/mol |
6.55818 kcal/mol |
1.20891 kcal/mol |
127 140@LB@ | |@LB@5'-CCG...AGCAA AACGU...CGG-3'@LB@ AACGGAUGCGCG@LB@ |||::|||||||@LB@ UUGUUUACGCGC@LB@3'-UUU...UACUA AGAAAG-5'@LB@ | |@LB@ 19 6@LB@@LB@@LB@Energy -10.74 kcal/mol@LB@Hybridization Energy -18.5075 kcal/mol@LB@Unfolding Energy - mRNA 6.55818 kcal/mol@LB@Unfolding Energy - sRNA 1.20891 kcal/mol@LB@@LB@Position - mRNA 128 -- 139@LB@Position - sRNA 7 -- 18@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 7 -- 13@LB@ |
98 |
0.009835 |
0.3104 |
b1213 |
ychQ |
-13.77 |
0.026325 |
164 -- 179 |
6 -- 23 |
SIRB family inner membrane protein |
|
_____________163________________180\n_____________|__________________|\n5'-GAC...CUAUG__________________AACGC...AUC-3'\n______________GUGAUAACGA__GCGCGU\n______________:|||||||:|__||||||\n______________UACUAUUGUU__CGCGCA\n3'-UUU...CCUAC__________UA______GAAAG-5'\n_____________|__________________|\n_____________24_________________5\n |
167 -- 173 |
14 -- 20 |
-20.3809 kcal/mol |
4.08318 kcal/mol |
2.52311 kcal/mol |
163 180@LB@ | |@LB@5'-GAC...CUAUG AACGC...AUC-3'@LB@ GUGAUAACGA GCGCGU@LB@ :|||||||:| ||||||@LB@ UACUAUUGUU CGCGCA@LB@3'-UUU...CCUAC UA GAAAG-5'@LB@ | |@LB@ 24 5@LB@@LB@@LB@Energy -13.77 kcal/mol@LB@Hybridization Energy -20.3809 kcal/mol@LB@Unfolding Energy - mRNA 4.08318 kcal/mol@LB@Unfolding Energy - sRNA 2.52311 kcal/mol@LB@@LB@Position - mRNA 164 -- 179@LB@Position - sRNA 6 -- 23@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 14 -- 20@LB@ |
99 |
0.009943 |
0.3104 |
b3405 |
ompR |
-10.46 |
0.101388 |
231 -- 245 |
8 -- 21 |
response regulator in two-component regulatory system with EnvZ |
|
_____________230_____________246\n_____________|_______________|\n5'-AAU...UGGUC________C______CUGCG...GCG-3'\n______________GAUGACGA_AUGCGC\n______________|||:||:|_||||||\n______________CUAUUGUU_UACGCG\n3'-UUU...UACUA_______________CAGAAAG-5'\n_____________|_______________|\n_____________22______________7\n |
232 -- 238 |
14 -- 20 |
-17.2341 kcal/mol |
5.5408 kcal/mol |
1.23638 kcal/mol |
230 246@LB@ | |@LB@5'-AAU...UGGUC C CUGCG...GCG-3'@LB@ GAUGACGA AUGCGC@LB@ |||:||:| ||||||@LB@ CUAUUGUU UACGCG@LB@3'-UUU...UACUA CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -10.46 kcal/mol@LB@Hybridization Energy -17.2341 kcal/mol@LB@Unfolding Energy - mRNA 5.5408 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 231 -- 245@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 14 -- 20@LB@ |
100 |
0.01004 |
0.3104 |
b3166 |
truB |
-9.42 |
0.151044 |
113 -- 128 |
5 -- 18 |
tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase |
|
_____________112______________129\n_____________|________________|\n5'-GGC...GGUUG__G________AU___AAACC...AAC-3'\n______________AA_GGAUGCGC__GUC\n______________||_::||||||__|||\n______________UU_UUUACGCG__CAG\n3'-UUU...UACUA__G_____________AAAG-5'\n_____________|________________|\n_____________19_______________4\n |
117 -- 123 |
8 -- 14 |
-15.4757 kcal/mol |
4.82661 kcal/mol |
1.2243 kcal/mol |
112 129@LB@ | |@LB@5'-GGC...GGUUG G AU AAACC...AAC-3'@LB@ AA GGAUGCGC GUC@LB@ || ::|||||| |||@LB@ UU UUUACGCG CAG@LB@3'-UUU...UACUA G AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -9.42 kcal/mol@LB@Hybridization Energy -15.4757 kcal/mol@LB@Unfolding Energy - mRNA 4.82661 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 113 -- 128@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 117 -- 123@LB@Position Seed - sRNA 8 -- 14@LB@ |