| 25 |
0.001541 |
0.1727 |
b1948 |
fliP |
-12.25 |
0.051366 |
190 -- 216 |
44 -- 71 |
flagellar biosynthesis protein |
|
_____________189__________________________217\n_____________|____________________________|\n5'-AUU...GUAGC________C__A_________UU_____CUGUC...GCG-3'\n______________GGGAGAUC_UG__UGCGUCGU__AUUGU\n______________||||:|||_||__||||:|||__|||:|\n______________CCCUUUAG_AC__ACGCGGCA__UAAUA\n3'-UUU...GUGGU________A__CG________UU_____AUACU...GUG-5'\n_____________|____________________________|\n_____________72___________________________43\n |
203 -- 209 |
51 -- 57 |
-29.2591 kcal/mol |
10.1171 kcal/mol |
6.89657 kcal/mol |
189 217@LB@ | |@LB@5'-AUU...GUAGC C A UU CUGUC...GCG-3'@LB@ GGGAGAUC UG UGCGUCGU AUUGU@LB@ ||||:||| || ||||:||| |||:|@LB@ CCCUUUAG AC ACGCGGCA UAAUA@LB@3'-UUU...GUGGU A CG UU AUACU...GUG-5'@LB@ | |@LB@ 72 43@LB@@LB@@LB@Energy -12.25 kcal/mol@LB@Hybridization Energy -29.2591 kcal/mol@LB@Unfolding Energy - mRNA 10.1171 kcal/mol@LB@Unfolding Energy - sRNA 6.89657 kcal/mol@LB@@LB@Position - mRNA 190 -- 216@LB@Position - sRNA 44 -- 71@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 164 |
0.009677 |
0.2068 |
b1956 |
yedQ |
-11.74 |
0.064514 |
187 -- 209 |
18 -- 41 |
putative membrane-anchored diguanylate cyclase |
|
_____________186______________________210\n_____________|________________________|\n5'-GAG...CAGGU________CGUC____________GAGAC...UAU-3'\n______________UGG_GAGU____AGGGUGCAGCAC\n______________||:_||||____||||::||||||\n______________ACU_CUCA____UCCCGUGUCGUG\n3'-UUU...AUAAU___A____AUGU____________ACAAA...GUG-5'\n_____________|________________________|\n_____________42_______________________17\n |
203 -- 209 |
18 -- 24 |
-27.1151 kcal/mol |
6.50018 kcal/mol |
8.87585 kcal/mol |
186 210@LB@ | |@LB@5'-GAG...CAGGU CGUC GAGAC...UAU-3'@LB@ UGG GAGU AGGGUGCAGCAC@LB@ ||: |||| ||||::||||||@LB@ ACU CUCA UCCCGUGUCGUG@LB@3'-UUU...AUAAU A AUGU ACAAA...GUG-5'@LB@ | |@LB@ 42 17@LB@@LB@@LB@Energy -11.74 kcal/mol@LB@Hybridization Energy -27.1151 kcal/mol@LB@Unfolding Energy - mRNA 6.50018 kcal/mol@LB@Unfolding Energy - sRNA 8.87585 kcal/mol@LB@@LB@Position - mRNA 187 -- 209@LB@Position - sRNA 18 -- 41@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 10 |
0.0003497 |
0.1198 |
b2023 |
hisH |
-14.83 |
0.015853 |
226 -- 277 |
39 -- 86 |
imidazole glycerol phosphate synthase glutamine amidotransferase subunit |
|
_____________225____________________________________________________278\n_____________|______________________________________________________|\n5'-GUG...UACCG___________CUGA___C__U_______GCCA_________CACG________ACCCA...CGG-3'\n______________GCUGCGCCAAC____ACU_GG_GAAGUCU____UUGCG_CGU_____GUUAUGA\n______________:||||||||||____||:_||_|||:|||____:||||_|||_____:||||||\n______________UGACGCGGUUG____UGG_CC_CUUUAGA____GACGC_GCA_____UAAUACU\n3'-UUU...GCUUA__________________U__________ACC______G___UUUAA_______ACUCA...GUG-5'\n_____________|______________________________________________________|\n_____________87_____________________________________________________38\n |
271 -- 277 |
39 -- 45 |
-47.4338 kcal/mol |
15.6024 kcal/mol |
16.9994 kcal/mol |
225 278@LB@ | |@LB@5'-GUG...UACCG CUGA C U GCCA CACG ACCCA...CGG-3'@LB@ GCUGCGCCAAC ACU GG GAAGUCU UUGCG CGU GUUAUGA@LB@ :|||||||||| ||: || |||:||| :|||| ||| :||||||@LB@ UGACGCGGUUG UGG CC CUUUAGA GACGC GCA UAAUACU@LB@3'-UUU...GCUUA U ACC G UUUAA ACUCA...GUG-5'@LB@ | |@LB@ 87 38@LB@@LB@@LB@Energy -14.83 kcal/mol@LB@Hybridization Energy -47.4338 kcal/mol@LB@Unfolding Energy - mRNA 15.6024 kcal/mol@LB@Unfolding Energy - sRNA 16.9994 kcal/mol@LB@@LB@Position - mRNA 226 -- 277@LB@Position - sRNA 39 -- 86@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 143 |
0.008308 |
0.2033 |
b2049 |
cpsB |
-11.81 |
0.062535 |
184 -- 242 |
25 -- 78 |
mannose-1-phosphate guanyltransferase |
|
_____________183_______________________________________________________________243\n_____________|_________________________________________________________________|\n5'-ACA...UAAAU____U_______U____A_______A________CUCUAUCCA__________________U___UCCGG...GCC-3'\n______________GAUA_UCGGGGA_AAUU_UGGC_GC_GUCG_AAA_________GUUGUGAUG____GCAGG_GGC\n______________:|:|_:|:||||_|||:_||||_||_|:||_|||_________:||:|||||____:||:|_|||\n______________UUGU_GGUCCCU_UUAG_ACCG_CG_CGGC_UUU_________UAAUACUAC____UGUUC_CCG\n3'-UUU...CGCGG_________________A____A_______A___AA________________UCAA_________UGUCG...GUG-5'\n_____________|_________________________________________________________________|\n_____________79________________________________________________________________24\n |
227 -- 233 |
37 -- 43 |
-41.0645 kcal/mol |
15.3492 kcal/mol |
13.8987 kcal/mol |
183 243@LB@ | |@LB@5'-ACA...UAAAU U U A A CUCUAUCCA U UCCGG...GCC-3'@LB@ GAUA UCGGGGA AAUU UGGC GC GUCG AAA GUUGUGAUG GCAGG GGC@LB@ :|:| :|:|||| |||: |||| || |:|| ||| :||:||||| :||:| |||@LB@ UUGU GGUCCCU UUAG ACCG CG CGGC UUU UAAUACUAC UGUUC CCG@LB@3'-UUU...CGCGG A A A AA UCAA UGUCG...GUG-5'@LB@ | |@LB@ 79 24@LB@@LB@@LB@Energy -11.81 kcal/mol@LB@Hybridization Energy -41.0645 kcal/mol@LB@Unfolding Energy - mRNA 15.3492 kcal/mol@LB@Unfolding Energy - sRNA 13.8987 kcal/mol@LB@@LB@Position - mRNA 184 -- 242@LB@Position - sRNA 25 -- 78@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 57 |
0.002848 |
0.1727 |
b2059 |
wcaA |
-10.75 |
0.100075 |
282 -- 295 |
72 -- 85 |
putative glycosyl transferase |
|
_____________281____________296\n_____________|______________|\n5'-AAC...CGGUU_________G____CAGCA-3'\n______________UUGCGCCAG_ACUA\n______________:|||||||:_||:|\n______________GACGCGGUU_UGGU\n3'-UUU...CUUAU_________G____CCCUU...GUG-5'\n_____________|______________|\n_____________86_____________71\n |
284 -- 290 |
77 -- 83 |
-19.8604 kcal/mol |
1.87274 kcal/mol |
7.23443 kcal/mol |
281 296@LB@ | |@LB@5'-AAC...CGGUU G CAGCA-3'@LB@ UUGCGCCAG ACUA@LB@ :|||||||: ||:|@LB@ GACGCGGUU UGGU@LB@3'-UUU...CUUAU G CCCUU...GUG-5'@LB@ | |@LB@ 86 71@LB@@LB@@LB@Energy -10.75 kcal/mol@LB@Hybridization Energy -19.8604 kcal/mol@LB@Unfolding Energy - mRNA 1.87274 kcal/mol@LB@Unfolding Energy - sRNA 7.23443 kcal/mol@LB@@LB@Position - mRNA 282 -- 295@LB@Position - sRNA 72 -- 85@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 77 -- 83@LB@ |
| 85 |
0.004761 |
0.1855 |
b2077 |
iceT |
-11.46 |
0.073016 |
53 -- 74 |
64 -- 86 |
putative citrate/iron-citrate/zinc-citrate efflux transporter |
|
_____________52______________________75\n_____________|_______________________|\n5'-CGG...UCGGA______G_______CU_______ACCAU...UUC-3'\n______________GCUGCG_CAAC_CC__GGGGAUC\n______________:|||||_||||_||__||::|||\n______________UGACGC_GUUG_GG__CCUUUAG\n3'-UUU...GCUUA______G____U__UC_______AACCG...GUG-5'\n_____________|_______________________|\n_____________87______________________63\n |
68 -- 74 |
64 -- 70 |
-29.0378 kcal/mol |
10.1908 kcal/mol |
7.38435 kcal/mol |
52 75@LB@ | |@LB@5'-CGG...UCGGA G CU ACCAU...UUC-3'@LB@ GCUGCG CAAC CC GGGGAUC@LB@ :||||| |||| || ||::|||@LB@ UGACGC GUUG GG CCUUUAG@LB@3'-UUU...GCUUA G U UC AACCG...GUG-5'@LB@ | |@LB@ 87 63@LB@@LB@@LB@Energy -11.46 kcal/mol@LB@Hybridization Energy -29.0378 kcal/mol@LB@Unfolding Energy - mRNA 10.1908 kcal/mol@LB@Unfolding Energy - sRNA 7.38435 kcal/mol@LB@@LB@Position - mRNA 53 -- 74@LB@Position - sRNA 64 -- 86@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 64 -- 70@LB@ |
| 160 |
0.009416 |
0.2062 |
b2095 |
gatZ |
-8.10 |
0.305092 |
155 -- 170 |
18 -- 33 |
D-tagatose 1 6-bisphosphate aldolase 2 subunit |
b3132 |
_____________154______________171\n_____________|________________|\n5'-AAU...GUGGC__________G_____AACGC...UUG-3'\n______________UGCGAGGGCA_GGCAU\n______________|:|:||||||_:|||:\n______________AUGUUCCCGU_UCGUG\n3'-UUU...ACUCA__________G_____ACAAA...GUG-5'\n_____________|________________|\n_____________34_______________17\n |
158 -- 164 |
24 -- 30 |
-26.3287 kcal/mol |
9.40457 kcal/mol |
8.82204 kcal/mol |
154 171@LB@ | |@LB@5'-AAU...GUGGC G AACGC...UUG-3'@LB@ UGCGAGGGCA GGCAU@LB@ |:|:|||||| :|||:@LB@ AUGUUCCCGU UCGUG@LB@3'-UUU...ACUCA G ACAAA...GUG-5'@LB@ | |@LB@ 34 17@LB@@LB@@LB@Energy -8.10 kcal/mol@LB@Hybridization Energy -26.3287 kcal/mol@LB@Unfolding Energy - mRNA 9.40457 kcal/mol@LB@Unfolding Energy - sRNA 8.82204 kcal/mol@LB@@LB@Position - mRNA 155 -- 170@LB@Position - sRNA 18 -- 33@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 4 |
3.471e-06 |
0.003055 |
b2099 |
yegU |
-19.38 |
0.001997 |
173 -- 198 |
64 -- 88 |
ADP-ribosylglycohydrolase family protein |
|
_____________172________________________199\n_____________|__________________________|\n5'-GUG...UCGCG_______________AA_________AAAUG...CAC-3'\n______________AUAUUGCGUUGACAC__GGGGAAGUU\n______________|||:||||:::||||__:|||||:|:\n______________UAUGACGCGGUUGUG__UCCCUUUAG\n3'-UUU...GCGCU_______________G__________AACCG...GUG-5'\n_____________|__________________________|\n_____________89_________________________63\n |
192 -- 198 |
64 -- 70 |
-32.1286 kcal/mol |
5.35868 kcal/mol |
7.38555 kcal/mol |
172 199@LB@ | |@LB@5'-GUG...UCGCG AA AAAUG...CAC-3'@LB@ AUAUUGCGUUGACAC GGGGAAGUU@LB@ |||:||||:::|||| :|||||:|:@LB@ UAUGACGCGGUUGUG UCCCUUUAG@LB@3'-UUU...GCGCU G AACCG...GUG-5'@LB@ | |@LB@ 89 63@LB@@LB@@LB@Energy -19.38 kcal/mol@LB@Hybridization Energy -32.1286 kcal/mol@LB@Unfolding Energy - mRNA 5.35868 kcal/mol@LB@Unfolding Energy - sRNA 7.38555 kcal/mol@LB@@LB@Position - mRNA 173 -- 198@LB@Position - sRNA 64 -- 88@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 64 -- 70@LB@ |
| 3 |
3.071e-06 |
0.003055 |
b2100 |
yegV |
-9.35 |
0.183884 |
5 -- 14 |
51 -- 60 |
putative kinase |
|
_____________4__________15\n_____________|__________|\n_______5'-AAUC__________CCUGU...CUU-3'\n______________GCUGCGCCGU\n______________||||||||||\n______________CGACGCGGCA\n3'-UUU...AGAAC__________UUUAA...GUG-5'\n_____________|__________|\n_____________61_________50\n |
8 -- 14 |
51 -- 57 |
-21.1769 kcal/mol |
6.95722 kcal/mol |
4.87294 kcal/mol |
4 15@LB@ | |@LB@ 5'-AAUC CCUGU...CUU-3'@LB@ GCUGCGCCGU@LB@ ||||||||||@LB@ CGACGCGGCA@LB@3'-UUU...AGAAC UUUAA...GUG-5'@LB@ | |@LB@ 61 50@LB@@LB@@LB@Energy -9.35 kcal/mol@LB@Hybridization Energy -21.1769 kcal/mol@LB@Unfolding Energy - mRNA 6.95722 kcal/mol@LB@Unfolding Energy - sRNA 4.87294 kcal/mol@LB@@LB@Position - mRNA 5 -- 14@LB@Position - sRNA 51 -- 60@LB@Position Seed - mRNA 8 -- 14@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 90 |
0.004828 |
0.1855 |
b2149 |
mglA |
-7.32 |
0.409352 |
216 -- 239 |
61 -- 86 |
methyl-galactoside ABC transporter ATPase |
|
_____________215________________________240\n_____________|__________________________|\n5'-CGA...CAACG___C____CU__________UA____UUGGA...AUU-3'\n______________ACU_CGUC____CCGGGGAA__CUUG\n______________|||_||:|____||:|||||__||||\n______________UGA_GCGG____GGUCCCUU__GAAC\n3'-UUU...GCUUA___C____UUGU________UA____CGACG...GUG-5'\n_____________|__________________________|\n_____________87_________________________60\n |
227 -- 233 |
67 -- 73 |
-23.5814 kcal/mol |
8.829 kcal/mol |
7.43637 kcal/mol |
215 240@LB@ | |@LB@5'-CGA...CAACG C CU UA UUGGA...AUU-3'@LB@ ACU CGUC CCGGGGAA CUUG@LB@ ||| ||:| ||:||||| ||||@LB@ UGA GCGG GGUCCCUU GAAC@LB@3'-UUU...GCUUA C UUGU UA CGACG...GUG-5'@LB@ | |@LB@ 87 60@LB@@LB@@LB@Energy -7.32 kcal/mol@LB@Hybridization Energy -23.5814 kcal/mol@LB@Unfolding Energy - mRNA 8.829 kcal/mol@LB@Unfolding Energy - sRNA 7.43637 kcal/mol@LB@@LB@Position - mRNA 216 -- 239@LB@Position - sRNA 61 -- 86@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 67 -- 73@LB@ |
