55 |
0.005043 |
0.3024 |
b1625 |
cnu |
-10.91 |
0.084723 |
38 -- 57 |
1 -- 21 |
nucleoid-associated oriC-binding protein; H-NS and StpA stabilizing factor |
|
_____________37____________________58\n_____________|_____________________|\n5'-UUU...UCAGG_________________AC__UUUUC...AUC-3'\n______________GAUAGUAAA_GCGCGUU__UC\n______________||||::|||_||||||:__||\n______________CUAUUGUUU_CGCGCAG__AG\n3'-UUU...UACUA_________A_______AA__-5'\n_____________|____________________|\n_____________22___________________1\n |
47 -- 53 |
5 -- 11 |
-17.9355 kcal/mol |
5.76636 kcal/mol |
1.25763 kcal/mol |
37 58@LB@ | |@LB@5'-UUU...UCAGG AC UUUUC...AUC-3'@LB@ GAUAGUAAA GCGCGUU UC@LB@ ||||::||| ||||||: ||@LB@ CUAUUGUUU CGCGCAG AG@LB@3'-UUU...UACUA A AA -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -10.91 kcal/mol@LB@Hybridization Energy -17.9355 kcal/mol@LB@Unfolding Energy - mRNA 5.76636 kcal/mol@LB@Unfolding Energy - sRNA 1.25763 kcal/mol@LB@@LB@Position - mRNA 38 -- 57@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 47 -- 53@LB@Position Seed - sRNA 5 -- 11@LB@ |
60 |
0.00555 |
0.3084 |
b2062 |
wza |
-10.85 |
0.086669 |
18 -- 25 |
4 -- 11 |
colanic acid export protein; outer membrane auxillary lipoprotein |
|
_____________17_______26\n_____________|________|\n5'-AAA...CGGUA________GGAUG...GCA-3'\n______________GCGUGUCU\n______________|||:||||\n______________CGCGCAGA\n3'-UUU...GUUUA________AAG-5'\n_____________|________|\n_____________12_______3\n |
19 -- 25 |
4 -- 10 |
-13.9362 kcal/mol |
1.92535 kcal/mol |
1.15639 kcal/mol |
17 26@LB@ | |@LB@5'-AAA...CGGUA GGAUG...GCA-3'@LB@ GCGUGUCU@LB@ |||:||||@LB@ CGCGCAGA@LB@3'-UUU...GUUUA AAG-5'@LB@ | |@LB@ 12 3@LB@@LB@@LB@Energy -10.85 kcal/mol@LB@Hybridization Energy -13.9362 kcal/mol@LB@Unfolding Energy - mRNA 1.92535 kcal/mol@LB@Unfolding Energy - sRNA 1.15639 kcal/mol@LB@@LB@Position - mRNA 18 -- 25@LB@Position - sRNA 4 -- 11@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 4 -- 10@LB@ |
145 |
0.01404 |
0.3104 |
b0721 |
sdhC |
-10.79 |
0.088833 |
202 -- 215 |
9 -- 22 |
succinate dehydrogenase membrane subunit binds cytochrome b556 |
|
_____________201____________216\n_____________|______________|\n5'-UCC...AUUCA______G_______AAAAA...CCG-3'\n______________UGAUAA_AAAUGUG\n______________||||||_|||||:|\n______________ACUAUU_UUUACGC\n3'-UUU...CUACU______G_______GCAGAAAG-5'\n_____________|______________|\n_____________23_____________8\n |
209 -- 215 |
9 -- 15 |
-14.1232 kcal/mol |
2.09271 kcal/mol |
1.23827 kcal/mol |
201 216@LB@ | |@LB@5'-UCC...AUUCA G AAAAA...CCG-3'@LB@ UGAUAA AAAUGUG@LB@ |||||| |||||:|@LB@ ACUAUU UUUACGC@LB@3'-UUU...CUACU G GCAGAAAG-5'@LB@ | |@LB@ 23 8@LB@@LB@@LB@Energy -10.79 kcal/mol@LB@Hybridization Energy -14.1232 kcal/mol@LB@Unfolding Energy - mRNA 2.09271 kcal/mol@LB@Unfolding Energy - sRNA 1.23827 kcal/mol@LB@@LB@Position - mRNA 202 -- 215@LB@Position - sRNA 9 -- 22@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 9 -- 15@LB@ |
97 |
0.009805 |
0.3104 |
b1306 |
pspC |
-10.74 |
0.090670 |
128 -- 139 |
7 -- 18 |
psp operon transcription co-activator |
|
_____________127__________140\n_____________|____________|\n5'-CCG...AGCAA____________AACGU...CGG-3'\n______________AACGGAUGCGCG\n______________|||::|||||||\n______________UUGUUUACGCGC\n3'-UUU...UACUA____________AGAAAG-5'\n_____________|____________|\n_____________19___________6\n |
133 -- 139 |
7 -- 13 |
-18.5075 kcal/mol |
6.55818 kcal/mol |
1.20891 kcal/mol |
127 140@LB@ | |@LB@5'-CCG...AGCAA AACGU...CGG-3'@LB@ AACGGAUGCGCG@LB@ |||::|||||||@LB@ UUGUUUACGCGC@LB@3'-UUU...UACUA AGAAAG-5'@LB@ | |@LB@ 19 6@LB@@LB@@LB@Energy -10.74 kcal/mol@LB@Hybridization Energy -18.5075 kcal/mol@LB@Unfolding Energy - mRNA 6.55818 kcal/mol@LB@Unfolding Energy - sRNA 1.20891 kcal/mol@LB@@LB@Position - mRNA 128 -- 139@LB@Position - sRNA 7 -- 18@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 7 -- 13@LB@ |
94 |
0.009498 |
0.3104 |
b4198 |
ulaF |
-10.74 |
0.090813 |
136 -- 150 |
6 -- 20 |
L-ribulose 5-phosphate 4-epimerase |
|
_____________135_____________151\n_____________|_______________|\n5'-GUC...CAGAA________A______GAUUG...GCG-3'\n______________GUGGCGAA_GCGCGU\n______________:|::|:||_||||||\n______________UAUUGUUU_CGCGCA\n3'-UUU...ACUAC________A______GAAAG-5'\n_____________|_______________|\n_____________21______________5\n |
137 -- 143 |
13 -- 19 |
-18.1084 kcal/mol |
6.12954 kcal/mol |
1.24244 kcal/mol |
135 151@LB@ | |@LB@5'-GUC...CAGAA A GAUUG...GCG-3'@LB@ GUGGCGAA GCGCGU@LB@ :|::|:|| ||||||@LB@ UAUUGUUU CGCGCA@LB@3'-UUU...ACUAC A GAAAG-5'@LB@ | |@LB@ 21 5@LB@@LB@@LB@Energy -10.74 kcal/mol@LB@Hybridization Energy -18.1084 kcal/mol@LB@Unfolding Energy - mRNA 6.12954 kcal/mol@LB@Unfolding Energy - sRNA 1.24244 kcal/mol@LB@@LB@Position - mRNA 136 -- 150@LB@Position - sRNA 6 -- 20@LB@Position Seed - mRNA 137 -- 143@LB@Position Seed - sRNA 13 -- 19@LB@ |
118 |
0.01199 |
0.3104 |
b2573 |
rpoE |
-10.72 |
0.091300 |
77 -- 87 |
8 -- 18 |
RNA polymerase sigma E factor |
|
_____________76__________88\n_____________|___________|\n5'-ACA...ACAAA___________UACGG...UGG-3'\n______________AACAGAUGCGU\n______________||||:|||||:\n______________UUGUUUACGCG\n3'-UUU...UACUA___________CAGAAAG-5'\n_____________|___________|\n_____________19__________7\n |
81 -- 87 |
8 -- 14 |
-15.0531 kcal/mol |
3.12642 kcal/mol |
1.20363 kcal/mol |
76 88@LB@ | |@LB@5'-ACA...ACAAA UACGG...UGG-3'@LB@ AACAGAUGCGU@LB@ ||||:|||||:@LB@ UUGUUUACGCG@LB@3'-UUU...UACUA CAGAAAG-5'@LB@ | |@LB@ 19 7@LB@@LB@@LB@Energy -10.72 kcal/mol@LB@Hybridization Energy -15.0531 kcal/mol@LB@Unfolding Energy - mRNA 3.12642 kcal/mol@LB@Unfolding Energy - sRNA 1.20363 kcal/mol@LB@@LB@Position - mRNA 77 -- 87@LB@Position - sRNA 8 -- 18@LB@Position Seed - mRNA 81 -- 87@LB@Position Seed - sRNA 8 -- 14@LB@ |
32 |
0.001981 |
0.2094 |
b3110 |
yhaO |
-10.61 |
0.095420 |
268 -- 283 |
7 -- 23 |
putative transporter |
|
_____________267_______________284\n_____________|_________________|\n5'-AAU...AAUGA____G____________AGAAG...UCG-3'\n______________GUGA_AGCGAGUG_GCG\n______________:|||_|:|:|:||_|||\n______________UACU_UUGUUUAC_CGC\n3'-UUU...CCUAC____A________G___AGAAAG-5'\n_____________|_________________|\n_____________24________________6\n |
274 -- 280 |
11 -- 17 |
-15.5882 kcal/mol |
2.45682 kcal/mol |
2.52012 kcal/mol |
267 284@LB@ | |@LB@5'-AAU...AAUGA G AGAAG...UCG-3'@LB@ GUGA AGCGAGUG GCG@LB@ :||| |:|:|:|| |||@LB@ UACU UUGUUUAC CGC@LB@3'-UUU...CCUAC A G AGAAAG-5'@LB@ | |@LB@ 24 6@LB@@LB@@LB@Energy -10.61 kcal/mol@LB@Hybridization Energy -15.5882 kcal/mol@LB@Unfolding Energy - mRNA 2.45682 kcal/mol@LB@Unfolding Energy - sRNA 2.52012 kcal/mol@LB@@LB@Position - mRNA 268 -- 283@LB@Position - sRNA 7 -- 23@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 11 -- 17@LB@ |
187 |
0.01837 |
0.3104 |
b2151 |
galS |
-10.59 |
0.096282 |
222 -- 228 |
5 -- 11 |
galactose- and fucose-inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor |
|
_____________221_____229\n_____________|_______|\n5'-UCU...AUGUA_______AGGCU...GUG-3'\n______________GCGCGUC\n______________|||||||\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
222 -- 228 |
5 -- 11 |
-14.6299 kcal/mol |
2.93004 kcal/mol |
1.11145 kcal/mol |
221 229@LB@ | |@LB@5'-UCU...AUGUA AGGCU...GUG-3'@LB@ GCGCGUC@LB@ |||||||@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -10.59 kcal/mol@LB@Hybridization Energy -14.6299 kcal/mol@LB@Unfolding Energy - mRNA 2.93004 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 222 -- 228@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 5 -- 11@LB@ |
31 |
0.001974 |
0.2094 |
b1080 |
flgI |
-10.59 |
0.096403 |
87 -- 101 |
7 -- 21 |
putative flagellar basal body protein |
|
_____________86______________102\n_____________|_______________|\n5'-AUU...ACUCA_______________CAUUG...AAA-3'\n______________GGUGGCGGAUGCGCG\n______________|:|::|::|||||||\n______________CUAUUGUUUACGCGC\n3'-UUU...UACUA_______________AGAAAG-5'\n_____________|_______________|\n_____________22______________6\n |
95 -- 101 |
7 -- 13 |
-22.6939 kcal/mol |
10.8668 kcal/mol |
1.24179 kcal/mol |
86 102@LB@ | |@LB@5'-AUU...ACUCA CAUUG...AAA-3'@LB@ GGUGGCGGAUGCGCG@LB@ |:|::|::|||||||@LB@ CUAUUGUUUACGCGC@LB@3'-UUU...UACUA AGAAAG-5'@LB@ | |@LB@ 22 6@LB@@LB@@LB@Energy -10.59 kcal/mol@LB@Hybridization Energy -22.6939 kcal/mol@LB@Unfolding Energy - mRNA 10.8668 kcal/mol@LB@Unfolding Energy - sRNA 1.24179 kcal/mol@LB@@LB@Position - mRNA 87 -- 101@LB@Position - sRNA 7 -- 21@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 7 -- 13@LB@ |
106 |
0.0109 |
0.3104 |
b2510 |
yfgJ |
-10.53 |
0.098521 |
243 -- 261 |
5 -- 21 |
DUF1407 family protein |
|
_____________242_________________262\n_____________|___________________|\n5'-UAA...AUCAG________CC_________GCCGA...UUU-3'\n______________GAUAACGG__AUGCGCGUU\n______________||||||::__||||||||:\n______________CUAUUGUU__UACGCGCAG\n3'-UUU...UACUA___________________AAAG-5'\n_____________|___________________|\n_____________22__________________4\n |
255 -- 261 |
5 -- 11 |
-20.9599 kcal/mol |
9.18032 kcal/mol |
1.24955 kcal/mol |
242 262@LB@ | |@LB@5'-UAA...AUCAG CC GCCGA...UUU-3'@LB@ GAUAACGG AUGCGCGUU@LB@ ||||||:: ||||||||:@LB@ CUAUUGUU UACGCGCAG@LB@3'-UUU...UACUA AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -10.53 kcal/mol@LB@Hybridization Energy -20.9599 kcal/mol@LB@Unfolding Energy - mRNA 9.18032 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 243 -- 261@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 5 -- 11@LB@ |