85 |
0.008151 |
0.3104 |
b0914 |
msbA |
-12.09 |
0.052799 |
181 -- 198 |
1 -- 18 |
lipid ABC transporter permease/ATPase |
|
_____________180________________199\n_____________|__________________|\n5'-AGC...AUUUC_________UG_______GAAUG...CGU-3'\n______________AACAAAUGC__GUUUUUU\n______________|||||||||__||:|||:\n______________UUGUUUACG__CAGAAAG\n3'-UUU...UACUA_________CG_______-5'\n_____________|_________________|\n_____________19________________1\n |
192 -- 198 |
1 -- 7 |
-16.7201 kcal/mol |
3.39277 kcal/mol |
1.24077 kcal/mol |
180 199@LB@ | |@LB@5'-AGC...AUUUC UG GAAUG...CGU-3'@LB@ AACAAAUGC GUUUUUU@LB@ ||||||||| ||:|||:@LB@ UUGUUUACG CAGAAAG@LB@3'-UUU...UACUA CG -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -12.09 kcal/mol@LB@Hybridization Energy -16.7201 kcal/mol@LB@Unfolding Energy - mRNA 3.39277 kcal/mol@LB@Unfolding Energy - sRNA 1.24077 kcal/mol@LB@@LB@Position - mRNA 181 -- 198@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 1 -- 7@LB@ |
86 |
0.008729 |
0.3104 |
b4213 |
cpdB |
-12.03 |
0.054140 |
68 -- 81 |
8 -- 21 |
2':3'-cyclic-nucleotide 2'-phosphodiesterase |
|
_____________67_____________82\n_____________|______________|\n5'-UGA...CUAUC_U____________CAACU...AUA-3'\n______________G_UAAUGAAUGCGC\n______________|_|||::|||||||\n______________C_AUUGUUUACGCG\n3'-UUU...UACUA_U____________CAGAAAG-5'\n_____________|______________|\n_____________22_____________7\n |
75 -- 81 |
8 -- 14 |
-15.4826 kcal/mol |
2.2212 kcal/mol |
1.23638 kcal/mol |
67 82@LB@ | |@LB@5'-UGA...CUAUC U CAACU...AUA-3'@LB@ G UAAUGAAUGCGC@LB@ | |||::|||||||@LB@ C AUUGUUUACGCG@LB@3'-UUU...UACUA U CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -12.03 kcal/mol@LB@Hybridization Energy -15.4826 kcal/mol@LB@Unfolding Energy - mRNA 2.2212 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 68 -- 81@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 8 -- 14@LB@ |
87 |
0.008927 |
0.3104 |
b0195 |
tsaA |
-8.24 |
0.234029 |
220 -- 237 |
1 -- 18 |
tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase SAM-dependent |
|
_____________219________________238\n_____________|__________________|\n5'-GAA...GUUCG_______AG_____A___GCUCG...ACG-3'\n______________AGCAAAU__GCGUU_UUC\n______________|:|||||__||||:_|||\n______________UUGUUUA__CGCAG_AAG\n3'-UUU...UACUA_______CG_____A___-5'\n_____________|_________________|\n_____________19________________1\n |
220 -- 226 |
12 -- 18 |
-15.6275 kcal/mol |
6.14962 kcal/mol |
1.24077 kcal/mol |
219 238@LB@ | |@LB@5'-GAA...GUUCG AG A GCUCG...ACG-3'@LB@ AGCAAAU GCGUU UUC@LB@ |:||||| ||||: |||@LB@ UUGUUUA CGCAG AAG@LB@3'-UUU...UACUA CG A -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -8.24 kcal/mol@LB@Hybridization Energy -15.6275 kcal/mol@LB@Unfolding Energy - mRNA 6.14962 kcal/mol@LB@Unfolding Energy - sRNA 1.24077 kcal/mol@LB@@LB@Position - mRNA 220 -- 237@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 12 -- 18@LB@ |
88 |
0.008928 |
0.3104 |
b0405 |
queA |
-8.89 |
0.184414 |
201 -- 209 |
5 -- 13 |
S-adenosylmethionine:tRNA ribosyltransferase-isomerase |
|
_____________200_______210\n_____________|_________|\n5'-GGG...GUGUC_________ACCGA...GGC-3'\n______________AUGCGCGUU\n______________||||||||:\n______________UACGCGCAG\n3'-UUU...UUGUU_________AAAG-5'\n_____________|_________|\n_____________14________4\n |
203 -- 209 |
5 -- 11 |
-14.1161 kcal/mol |
4.07268 kcal/mol |
1.15134 kcal/mol |
200 210@LB@ | |@LB@5'-GGG...GUGUC ACCGA...GGC-3'@LB@ AUGCGCGUU@LB@ ||||||||:@LB@ UACGCGCAG@LB@3'-UUU...UUGUU AAAG-5'@LB@ | |@LB@ 14 4@LB@@LB@@LB@Energy -8.89 kcal/mol@LB@Hybridization Energy -14.1161 kcal/mol@LB@Unfolding Energy - mRNA 4.07268 kcal/mol@LB@Unfolding Energy - sRNA 1.15134 kcal/mol@LB@@LB@Position - mRNA 201 -- 209@LB@Position - sRNA 5 -- 13@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 5 -- 11@LB@ |
89 |
0.009028 |
0.3104 |
b0529 |
folD |
-8.62 |
0.203566 |
239 -- 251 |
4 -- 17 |
bifunctional 5 10-methylene-tetrahydrofolate dehydrogenase/ 5 10-methylene-tetrahydrofolate cyclohydrolase |
|
_____________238____________252\n_____________|______________|\n5'-CAA...GCGCA______________GAAGU...CAC-3'\n______________GCAGGUGCGC_UCU\n______________:||::|||||_|||\n______________UGUUUACGCG_AGA\n3'-UUU...ACUAU__________C___AAG-5'\n_____________|______________|\n_____________18_____________3\n |
242 -- 248 |
8 -- 14 |
-17.587 kcal/mol |
7.73476 kcal/mol |
1.22888 kcal/mol |
238 252@LB@ | |@LB@5'-CAA...GCGCA GAAGU...CAC-3'@LB@ GCAGGUGCGC UCU@LB@ :||::||||| |||@LB@ UGUUUACGCG AGA@LB@3'-UUU...ACUAU C AAG-5'@LB@ | |@LB@ 18 3@LB@@LB@@LB@Energy -8.62 kcal/mol@LB@Hybridization Energy -17.587 kcal/mol@LB@Unfolding Energy - mRNA 7.73476 kcal/mol@LB@Unfolding Energy - sRNA 1.22888 kcal/mol@LB@@LB@Position - mRNA 239 -- 251@LB@Position - sRNA 4 -- 17@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 8 -- 14@LB@ |
90 |
0.009145 |
0.3104 |
b1079 |
flgH |
-6.81 |
0.379144 |
179 -- 204 |
10 -- 38 |
flagellar protein of basal-body outer-membrane L ring |
|
_____________178___________________________205\n_____________|_____________________________|\n5'-ACU...GUUUA____U___U____A_________C_____AAAAA...GGG-3'\n______________CUGA_UUU___GA_GAUGAUAGC__AUGC\n______________||||_||:___||_|||||||:|__||||\n______________GACU_AAG___CU_CUACUAUUG__UACG\n3'-UUU...GUAGA____U___UCC__A_________UU____CGCAG...AAG-5'\n_____________|_____________________________|\n_____________39____________________________9\n |
193 -- 199 |
16 -- 22 |
-21.1251 kcal/mol |
4.97135 kcal/mol |
9.34299 kcal/mol |
178 205@LB@ | |@LB@5'-ACU...GUUUA U U A C AAAAA...GGG-3'@LB@ CUGA UUU GA GAUGAUAGC AUGC@LB@ |||| ||: || |||||||:| ||||@LB@ GACU AAG CU CUACUAUUG UACG@LB@3'-UUU...GUAGA U UCC A UU CGCAG...AAG-5'@LB@ | |@LB@ 39 9@LB@@LB@@LB@Energy -6.81 kcal/mol@LB@Hybridization Energy -21.1251 kcal/mol@LB@Unfolding Energy - mRNA 4.97135 kcal/mol@LB@Unfolding Energy - sRNA 9.34299 kcal/mol@LB@@LB@Position - mRNA 179 -- 204@LB@Position - sRNA 10 -- 38@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 16 -- 22@LB@ |
91 |
0.009339 |
0.3104 |
b2562 |
yfhL |
-11.62 |
0.063873 |
146 -- 160 |
6 -- 20 |
putative 4Fe-4S cluster-containing protein |
|
_____________145_____________161\n_____________|_______________|\n5'-AGC...UCUGA____A__________AUAAU...UUA-3'\n______________GUAA_GAAUGCGCGU\n______________:|||_:|||||||||\n______________UAUU_UUUACGCGCA\n3'-UUU...ACUAC____G__________GAAAG-5'\n_____________|_______________|\n_____________21______________5\n |
154 -- 160 |
6 -- 12 |
-16.8242 kcal/mol |
3.96482 kcal/mol |
1.24244 kcal/mol |
145 161@LB@ | |@LB@5'-AGC...UCUGA A AUAAU...UUA-3'@LB@ GUAA GAAUGCGCGU@LB@ :||| :|||||||||@LB@ UAUU UUUACGCGCA@LB@3'-UUU...ACUAC G GAAAG-5'@LB@ | |@LB@ 21 5@LB@@LB@@LB@Energy -11.62 kcal/mol@LB@Hybridization Energy -16.8242 kcal/mol@LB@Unfolding Energy - mRNA 3.96482 kcal/mol@LB@Unfolding Energy - sRNA 1.24244 kcal/mol@LB@@LB@Position - mRNA 146 -- 160@LB@Position - sRNA 6 -- 20@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 6 -- 12@LB@ |
92 |
0.009361 |
0.3104 |
b3652 |
recG |
-7.88 |
0.265686 |
265 -- 278 |
7 -- 20 |
ATP-dependent DNA helicase |
|
_____________264_____________279\n_____________|_______________|\n5'-CAA...ACUUA________C______AAAAU...UGC-3'\n______________GUAACAAA_UG_GCG\n______________:|||||||_||_|||\n______________UAUUGUUU_AC_CGC\n3'-UUU...ACUAC___________G___AGAAAG-5'\n_____________|_______________|\n_____________21______________6\n |
266 -- 272 |
13 -- 19 |
-11.4583 kcal/mol |
2.34189 kcal/mol |
1.23906 kcal/mol |
264 279@LB@ | |@LB@5'-CAA...ACUUA C AAAAU...UGC-3'@LB@ GUAACAAA UG GCG@LB@ :||||||| || |||@LB@ UAUUGUUU AC CGC@LB@3'-UUU...ACUAC G AGAAAG-5'@LB@ | |@LB@ 21 6@LB@@LB@@LB@Energy -7.88 kcal/mol@LB@Hybridization Energy -11.4583 kcal/mol@LB@Unfolding Energy - mRNA 2.34189 kcal/mol@LB@Unfolding Energy - sRNA 1.23906 kcal/mol@LB@@LB@Position - mRNA 265 -- 278@LB@Position - sRNA 7 -- 20@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 13 -- 19@LB@ |
93 |
0.009444 |
0.3104 |
b3822 |
recQ |
-7.42 |
0.310549 |
176 -- 212 |
9 -- 45 |
ATP-dependent DNA helicase |
|
_____________175____________________________________213\n_____________|______________________________________|\n5'-CGC...CUGUU________A__CAA__________AU______CAG___GAAGU...UUA-3'\n______________UUUAUUUC_GG___UC_GGGGUGA__GUGGCG___GCG\n______________||:||:||_|:___||_|||:|||__:|::|:___|||\n______________AAGUAGAG_CU___AG_CCCUACU__UAUUGU___CGC\n3'-UUU...UUUUA________A__UA___U_______AC______UUA___GCAGAAAG-5'\n_____________|______________________________________|\n_____________46_____________________________________8\n |
192 -- 198 |
23 -- 29 |
-25.6556 kcal/mol |
8.78202 kcal/mol |
9.45193 kcal/mol |
175 213@LB@ | |@LB@5'-CGC...CUGUU A CAA AU CAG GAAGU...UUA-3'@LB@ UUUAUUUC GG UC GGGGUGA GUGGCG GCG@LB@ ||:||:|| |: || |||:||| :|::|: |||@LB@ AAGUAGAG CU AG CCCUACU UAUUGU CGC@LB@3'-UUU...UUUUA A UA U AC UUA GCAGAAAG-5'@LB@ | |@LB@ 46 8@LB@@LB@@LB@Energy -7.42 kcal/mol@LB@Hybridization Energy -25.6556 kcal/mol@LB@Unfolding Energy - mRNA 8.78202 kcal/mol@LB@Unfolding Energy - sRNA 9.45193 kcal/mol@LB@@LB@Position - mRNA 176 -- 212@LB@Position - sRNA 9 -- 45@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 23 -- 29@LB@ |
94 |
0.009498 |
0.3104 |
b4198 |
ulaF |
-10.74 |
0.090813 |
136 -- 150 |
6 -- 20 |
L-ribulose 5-phosphate 4-epimerase |
|
_____________135_____________151\n_____________|_______________|\n5'-GUC...CAGAA________A______GAUUG...GCG-3'\n______________GUGGCGAA_GCGCGU\n______________:|::|:||_||||||\n______________UAUUGUUU_CGCGCA\n3'-UUU...ACUAC________A______GAAAG-5'\n_____________|_______________|\n_____________21______________5\n |
137 -- 143 |
13 -- 19 |
-18.1084 kcal/mol |
6.12954 kcal/mol |
1.24244 kcal/mol |
135 151@LB@ | |@LB@5'-GUC...CAGAA A GAUUG...GCG-3'@LB@ GUGGCGAA GCGCGU@LB@ :|::|:|| ||||||@LB@ UAUUGUUU CGCGCA@LB@3'-UUU...ACUAC A GAAAG-5'@LB@ | |@LB@ 21 5@LB@@LB@@LB@Energy -10.74 kcal/mol@LB@Hybridization Energy -18.1084 kcal/mol@LB@Unfolding Energy - mRNA 6.12954 kcal/mol@LB@Unfolding Energy - sRNA 1.24244 kcal/mol@LB@@LB@Position - mRNA 136 -- 150@LB@Position - sRNA 6 -- 20@LB@Position Seed - mRNA 137 -- 143@LB@Position Seed - sRNA 13 -- 19@LB@ |