| 102 |
0.005164 |
0.1728 |
stm0668 |
ybeY |
-18.23 |
0.034693 |
146 -- 193 |
37 -- 81 |
rRNA maturation RNase YbeY |
|
_____________145__________________________________________194\n_____________|____________________________________________|\n5'-UCC...AAAAC____________UUG____________G_______GU_______AGGAG...CGC-3'\n______________GCAAA_GCGGCG___GCGGCA____GA_CGUAAGC__GAAGCCC\n______________|||||_:|::|:___:|::||____:|_|||||||__:||||||\n______________CGUUU_UGUUGU___UGUUGU____UU_GCAUUCG__UUUCGGG\n3'-UUU...GUUAA_____G______UG_______AGUG__G_______GU_______UAGUC...UCA-5'\n_____________|____________________________________________|\n_____________82___________________________________________36\n |
178 -- 184 |
48 -- 54 |
-38.2699 kcal/mol |
15.4401 kcal/mol |
16.4278 kcal/mol |
145 194@LB@ | |@LB@5'-UCC...AAAAC UUG G GU AGGAG...CGC-3'@LB@ GCAAA GCGGCG GCGGCA GA CGUAAGC GAAGCCC@LB@ ||||| :|::|: :|::|| :| ||||||| :||||||@LB@ CGUUU UGUUGU UGUUGU UU GCAUUCG UUUCGGG@LB@3'-UUU...GUUAA G UG AGUG G GU UAGUC...UCA-5'@LB@ | |@LB@ 82 36@LB@@LB@@LB@Energy -18.23 kcal/mol@LB@Hybridization Energy -38.2699 kcal/mol@LB@Unfolding Energy - mRNA 15.4401 kcal/mol@LB@Unfolding Energy - sRNA 16.4278 kcal/mol@LB@@LB@Position - mRNA 146 -- 193@LB@Position - sRNA 37 -- 81@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 115 |
0.005604 |
0.1728 |
stm0982 |
himD |
-16.93 |
0.057154 |
154 -- 192 |
37 -- 75 |
integration host factor subunit beta |
|
______________154________193\n______________|__________|\n___________5'-___________GGCUG...UGG-3'\n______________AACAACGCAAU\n______________||||||:|||:\n______________UUGUUGUGUUG\n3'-UUU...UUGUG___________UAGUG...UCA-5'\n_____________|___________|\n_____________76__________36\n |
5 -- 11 |
72 -- 78 |
-12.1177 kcal/mol |
1.51678 kcal/mol |
3.07616 kcal/mol |
154 193@LB@ | |@LB@ 5'- GGCUG...UGG-3'@LB@ AACAACGCAAU@LB@ ||||||:|||:@LB@ UUGUUGUGUUG@LB@3'-UUU...UUGUG UAGUG...UCA-5'@LB@ | |@LB@ 76 36@LB@@LB@@LB@Energy -16.93 kcal/mol@LB@Hybridization Energy -12.1177 kcal/mol@LB@Unfolding Energy - mRNA 1.51678 kcal/mol@LB@Unfolding Energy - sRNA 3.07616 kcal/mol@LB@@LB@Position - mRNA 154 -- 192@LB@Position - sRNA 37 -- 75@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 128 |
0.006467 |
0.1774 |
stm3907 |
N/A |
-18.55 |
0.030594 |
118 -- 173 |
37 -- 89 |
|
|
_____________117__________________________174\n_____________|____________________________|\n5'-UCA...AAAAA____________ACCAGU______G___AAAAC...UUU-3'\n______________CAGACGCAACAA______CAGCAU_AUA\n______________||:||:||||||______||:|||_|:|\n______________GUUUGUGUUGUU______GUUGUA_UGU\n3'-UUU...UUAAC____________GU__________G___UGGCA...UCA-5'\n_____________|____________________________|\n_____________90___________________________36\n |
123 -- 129 |
78 -- 84 |
-22.8944 kcal/mol |
3.16008 kcal/mol |
6.30461 kcal/mol |
117 174@LB@ | |@LB@5'-UCA...AAAAA ACCAGU G AAAAC...UUU-3'@LB@ CAGACGCAACAA CAGCAU AUA@LB@ ||:||:|||||| ||:||| |:|@LB@ GUUUGUGUUGUU GUUGUA UGU@LB@3'-UUU...UUAAC GU G UGGCA...UCA-5'@LB@ | |@LB@ 90 36@LB@@LB@@LB@Energy -18.55 kcal/mol@LB@Hybridization Energy -22.8944 kcal/mol@LB@Unfolding Energy - mRNA 3.16008 kcal/mol@LB@Unfolding Energy - sRNA 6.30461 kcal/mol@LB@@LB@Position - mRNA 118 -- 173@LB@Position - sRNA 37 -- 89@LB@Position Seed - mRNA 123 -- 129@LB@Position Seed - sRNA 78 -- 84@LB@ |
| 134 |
0.006725 |
0.1774 |
stm0546 |
fimD |
-17.45 |
0.046766 |
176 -- 200 |
37 -- 60 |
outer membrane usher protein |
stm0301 stm0175 stm4593 stm3638 stm0023 |
_____________175_____________201\n_____________|_______________|\n5'-UCA...AAGCC______G________GAAGA...CGA-3'\n______________ACACGA_AACACGAU\n______________||||:|_|||||:|:\n______________UGUGUU_UUGUGUUG\n3'-UUU...ACGUU______G________UAGUG...UCA-5'\n_____________|_______________|\n_____________61______________36\n |
196 -- 202 |
72 -- 78 |
-17.1314 kcal/mol |
2.16166 kcal/mol |
3.50587 kcal/mol |
175 201@LB@ | |@LB@5'-UCA...AAGCC G GAAGA...CGA-3'@LB@ ACACGA AACACGAU@LB@ ||||:| |||||:|:@LB@ UGUGUU UUGUGUUG@LB@3'-UUU...ACGUU G UAGUG...UCA-5'@LB@ | |@LB@ 61 36@LB@@LB@@LB@Energy -17.45 kcal/mol@LB@Hybridization Energy -17.1314 kcal/mol@LB@Unfolding Energy - mRNA 2.16166 kcal/mol@LB@Unfolding Energy - sRNA 3.50587 kcal/mol@LB@@LB@Position - mRNA 176 -- 200@LB@Position - sRNA 37 -- 60@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 148 |
0.007836 |
0.1845 |
stm2318 |
nuoL |
-12.84 |
0.254324 |
144 -- 178 |
37 -- 76 |
NADH-quinone oxidoreductase subunit L |
|
_____________143___________________179\n_____________|_____________________|\n5'-GGG...AGACC_____U____U__________UUCUC...UUG-3'\n______________GAUGG_CAGG___GAUGUACA\n______________||::|_||||___:|||||||\n______________CUGUC_GUCC___UUACAUGU\n3'-UUU...GAUAC_____U____CAU________CCUUC...UCA-5'\n_____________|_____________________|\n_____________77____________________36\n |
82 -- 88 |
142 -- 148 |
-19.9967 kcal/mol |
7.20144 kcal/mol |
3.50251 kcal/mol |
143 179@LB@ | |@LB@5'-GGG...AGACC U U UUCUC...UUG-3'@LB@ GAUGG CAGG GAUGUACA@LB@ ||::| |||| :|||||||@LB@ CUGUC GUCC UUACAUGU@LB@3'-UUU...GAUAC U CAU CCUUC...UCA-5'@LB@ | |@LB@ 77 36@LB@@LB@@LB@Energy -12.84 kcal/mol@LB@Hybridization Energy -19.9967 kcal/mol@LB@Unfolding Energy - mRNA 7.20144 kcal/mol@LB@Unfolding Energy - sRNA 3.50251 kcal/mol@LB@@LB@Position - mRNA 144 -- 178@LB@Position - sRNA 37 -- 76@LB@Position Seed - mRNA 82 -- 88@LB@Position Seed - sRNA 142 -- 148@LB@ |
| 3 |
3.698e-05 |
0.04123 |
stm4398 |
cycA |
-21.36 |
0.010235 |
127 -- 178 |
38 -- 82 |
D-serine/D-alanine/glycine transporter |
|
_____________126_________________________________________________179\n_____________|___________________________________________________|\n5'-CGU...GCCCG___AAC__________________________________CAU_____A__AGGUA...UUG-3'\n______________CAC_____ACAGACAGG_______UACAGGAA__GAAAAA___GGUAG_UC\n______________|||_____|||||||||_______||||||||__||||||___|||||_||\n______________GUG_____UGUCUGUCC_______AUGUCCUU__CUUUUU___CCAUC_AG\n3'-UUU...AAUUA___AUACC_________CAUUUAC________CA______C__________AGCGA...UCA-5'\n_____________|___________________________________________________|\n_____________83__________________________________________________37\n |
187 -- 193 |
138 -- 144 |
-35.3631 kcal/mol |
4.42279 kcal/mol |
10.6404 kcal/mol |
126 179@LB@ | |@LB@5'-CGU...GCCCG AAC CAU A AGGUA...UUG-3'@LB@ CAC ACAGACAGG UACAGGAA GAAAAA GGUAG UC@LB@ ||| ||||||||| |||||||| |||||| ||||| ||@LB@ GUG UGUCUGUCC AUGUCCUU CUUUUU CCAUC AG@LB@3'-UUU...AAUUA AUACC CAUUUAC CA C AGCGA...UCA-5'@LB@ | |@LB@ 83 37@LB@@LB@@LB@Energy -21.36 kcal/mol@LB@Hybridization Energy -35.3631 kcal/mol@LB@Unfolding Energy - mRNA 4.42279 kcal/mol@LB@Unfolding Energy - sRNA 10.6404 kcal/mol@LB@@LB@Position - mRNA 127 -- 178@LB@Position - sRNA 38 -- 82@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 138 -- 144@LB@ |
| 22 |
0.0005859 |
0.08814 |
stm1976 |
fliM |
-14.91 |
0.122150 |
23 -- 60 |
38 -- 69 |
flagellar motor switch protein FliM |
|
_____________22_____________________________________61\n_____________|______________________________________|\n5'-AAA...AAGUG_________CU____UUGUUGUUUU_____________CGCCG...GCG-3'\n______________CGCAGCCGU__GCUG__________CCCGUCAGAAUGC\n______________|:||:||||__||::__________|||:||||||::|\n______________GUGUUGGCA__CGGU__________GGGUAGUCUUGUG\n3'-UUU...UUGUA_________UU____UUUC___________________CGUAA...UCA-5'\n_____________|______________________________________|\n_____________70_____________________________________37\n |
49 -- 55 |
43 -- 49 |
-35.5971 kcal/mol |
10.3893 kcal/mol |
19.1758 kcal/mol |
22 61@LB@ | |@LB@5'-AAA...AAGUG CU UUGUUGUUUU CGCCG...GCG-3'@LB@ CGCAGCCGU GCUG CCCGUCAGAAUGC@LB@ |:||:|||| ||:: |||:||||||::|@LB@ GUGUUGGCA CGGU GGGUAGUCUUGUG@LB@3'-UUU...UUGUA UU UUUC CGUAA...UCA-5'@LB@ | |@LB@ 70 37@LB@@LB@@LB@Energy -14.91 kcal/mol@LB@Hybridization Energy -35.5971 kcal/mol@LB@Unfolding Energy - mRNA 10.3893 kcal/mol@LB@Unfolding Energy - sRNA 19.1758 kcal/mol@LB@@LB@Position - mRNA 23 -- 60@LB@Position - sRNA 38 -- 69@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 58 |
0.002307 |
0.14 |
stm2234 |
N/A |
-13.92 |
0.174542 |
131 -- 196 |
38 -- 89 |
phage tail protein |
stm2705 stm2233 |
_____________130______197\n_____________|________|\n5'-CUG...UACAC________AUCCA...CAG-3'\n______________CAGACAGG\n______________||||||||\n______________GUCUGUCC\n3'-UUU...UACCU________CAUUU...UCA-5'\n_____________|________|\n_____________90_______37\n |
132 -- 138 |
153 -- 159 |
-13.9425 kcal/mol |
2.61206 kcal/mol |
2.72972 kcal/mol |
130 197@LB@ | |@LB@5'-CUG...UACAC AUCCA...CAG-3'@LB@ CAGACAGG@LB@ ||||||||@LB@ GUCUGUCC@LB@3'-UUU...UACCU CAUUU...UCA-5'@LB@ | |@LB@ 90 37@LB@@LB@@LB@Energy -13.92 kcal/mol@LB@Hybridization Energy -13.9425 kcal/mol@LB@Unfolding Energy - mRNA 2.61206 kcal/mol@LB@Unfolding Energy - sRNA 2.72972 kcal/mol@LB@@LB@Position - mRNA 131 -- 196@LB@Position - sRNA 38 -- 89@LB@Position Seed - mRNA 132 -- 138@LB@Position Seed - sRNA 153 -- 159@LB@ |
| 78 |
0.003685 |
0.1596 |
stm0423 |
ispA |
-20.49 |
0.014403 |
269 -- 289 |
38 -- 58 |
(2E 6E)-farnesyl diphosphate synthase |
|
_____________268____________________290\n_____________|______________________|\n5'-UGA...AUCGC____CU_____UU_________UCCCG...UCG-3'\n______________GCCA___GCCC__UCAGAACAC\n______________||||___||||__|||||||||\n______________CGGU___CGGG__AGUCUUGUG\n3'-UUU...GCAUU____UUU____U__________CGUAA...UCA-5'\n_____________|______________________|\n_____________59_____________________37\n |
281 -- 287 |
40 -- 46 |
-28.5082 kcal/mol |
2.40221 kcal/mol |
13.7699 kcal/mol |
268 290@LB@ | |@LB@5'-UGA...AUCGC CU UU UCCCG...UCG-3'@LB@ GCCA GCCC UCAGAACAC@LB@ |||| |||| |||||||||@LB@ CGGU CGGG AGUCUUGUG@LB@3'-UUU...GCAUU UUU U CGUAA...UCA-5'@LB@ | |@LB@ 59 37@LB@@LB@@LB@Energy -20.49 kcal/mol@LB@Hybridization Energy -28.5082 kcal/mol@LB@Unfolding Energy - mRNA 2.40221 kcal/mol@LB@Unfolding Energy - sRNA 13.7699 kcal/mol@LB@@LB@Position - mRNA 269 -- 289@LB@Position - sRNA 38 -- 58@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 109 |
0.005328 |
0.1728 |
stm3082 |
N/A |
-12.60 |
0.275269 |
106 -- 154 |
38 -- 90 |
galactonate oxidoreductase |
|
_____________105________________________155\n_____________|__________________________|\n5'-AAU...ACAAC______UUUUUA_______UU_____GGCCU...CGG-3'\n______________GCAGAC______AACAACA__CAGCA\n______________|||:||______|||||||__||:||\n______________CGUUUG______UUGUUGU__GUUGU\n3'-UUU...GUUAA______UG__________________AGUGU...UCA-5'\n_____________|__________________________|\n_____________91_________________________37\n |
118 -- 124 |
76 -- 82 |
-16.9817 kcal/mol |
2.50135 kcal/mol |
3.80671 kcal/mol |
105 155@LB@ | |@LB@5'-AAU...ACAAC UUUUUA UU GGCCU...CGG-3'@LB@ GCAGAC AACAACA CAGCA@LB@ |||:|| ||||||| ||:||@LB@ CGUUUG UUGUUGU GUUGU@LB@3'-UUU...GUUAA UG AGUGU...UCA-5'@LB@ | |@LB@ 91 37@LB@@LB@@LB@Energy -12.60 kcal/mol@LB@Hybridization Energy -16.9817 kcal/mol@LB@Unfolding Energy - mRNA 2.50135 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 106 -- 154@LB@Position - sRNA 38 -- 90@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 76 -- 82@LB@ |
