| 156 |
0.008228 |
0.1845 |
stm1715 |
yciN |
-28.69 |
0.000575 |
104 -- 163 |
36 -- 90 |
similar to E. coli orf hypothetical protein (AAC74355.1); Blastp hit to AAC74355.1 (83 aa) 92% identity in aa 1 - 83 |
|
_____________103___________________________________________________________164\n_____________|_____________________________________________________________|\n5'-UCG...UGCCA____________UG____AUC_____AUUUC_______AAUAUUU___________G____UCAGC...CCA-3'\n______________GUGAACGCAACA__ACAA___CAUCA_____CUGUGAG_______GCCCAUCAGAA__UGC\n______________|::|||:|||||__||||___|||||_____|:||:||_______|||||||||||__:||\n______________CGUUUGUGUUGU__UGUU___GUAGU_____GGCAUUC_______CGGGUAGUCUU__GCG\n3'-UUU...GUUAA____________UG____________GUU_________GGUUUU____________GU___UAAGG...UCA-5'\n_____________|_____________________________________________________________|\n_____________91____________________________________________________________35\n |
152 -- 158 |
42 -- 48 |
-53.6458 kcal/mol |
9.96696 kcal/mol |
22.5 kcal/mol |
103 164@LB@ | |@LB@5'-UCG...UGCCA UG AUC AUUUC AAUAUUU G UCAGC...CCA-3'@LB@ GUGAACGCAACA ACAA CAUCA CUGUGAG GCCCAUCAGAA UGC@LB@ |::|||:||||| |||| ||||| |:||:|| ||||||||||| :||@LB@ CGUUUGUGUUGU UGUU GUAGU GGCAUUC CGGGUAGUCUU GCG@LB@3'-UUU...GUUAA UG GUU GGUUUU GU UAAGG...UCA-5'@LB@ | |@LB@ 91 35@LB@@LB@@LB@Energy -28.69 kcal/mol@LB@Hybridization Energy -53.6458 kcal/mol@LB@Unfolding Energy - mRNA 9.96696 kcal/mol@LB@Unfolding Energy - sRNA 22.5 kcal/mol@LB@@LB@Position - mRNA 104 -- 163@LB@Position - sRNA 36 -- 90@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 79 |
0.003723 |
0.1596 |
stm1723 |
trpE |
-16.56 |
0.065817 |
202 -- 256 |
41 -- 91 |
anthranilate synthase subunit I |
|
_____________201__________________257\n_____________|____________________|\n5'-UGA...AAAUG__________UU________CGGUU...CGG-3'\n______________GCAGCGACAU__GCAUUACA\n______________:||:|:|||:__:|||:|||\n______________UGUUGUUGUG__UGUAGUGU\n3'-UUU...GUUUG__________U_________UGGCA...UCA-5'\n_____________|____________________|\n_____________92___________________40\n |
78 -- 84 |
66 -- 72 |
-20.8013 kcal/mol |
5.41524 kcal/mol |
5.89278 kcal/mol |
201 257@LB@ | |@LB@5'-UGA...AAAUG UU CGGUU...CGG-3'@LB@ GCAGCGACAU GCAUUACA@LB@ :||:|:|||: :|||:|||@LB@ UGUUGUUGUG UGUAGUGU@LB@3'-UUU...GUUUG U UGGCA...UCA-5'@LB@ | |@LB@ 92 40@LB@@LB@@LB@Energy -16.56 kcal/mol@LB@Hybridization Energy -20.8013 kcal/mol@LB@Unfolding Energy - mRNA 5.41524 kcal/mol@LB@Unfolding Energy - sRNA 5.89278 kcal/mol@LB@@LB@Position - mRNA 202 -- 256@LB@Position - sRNA 41 -- 91@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 186 |
0.01044 |
0.1967 |
stm1725 |
trpC |
-12.00 |
0.335236 |
146 -- 174 |
55 -- 86 |
bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase |
|
_____________145_______________175\n_____________|_________________|\n5'-AAA...GUUCU____________C____AUGAC...AGC-3'\n______________GCGCAACGGCAC_GCAU\n______________:|:||||::|||_:|||\n______________UGUGUUGUUGUG_UGUA\n3'-UUU...ACGUU____________U____GUGUU...UCA-5'\n_____________|_________________|\n_____________87________________54\n |
151 -- 157 |
75 -- 81 |
-20.8979 kcal/mol |
6.12922 kcal/mol |
3.85824 kcal/mol |
145 175@LB@ | |@LB@5'-AAA...GUUCU C AUGAC...AGC-3'@LB@ GCGCAACGGCAC GCAU@LB@ :|:||||::||| :|||@LB@ UGUGUUGUUGUG UGUA@LB@3'-UUU...ACGUU U GUGUU...UCA-5'@LB@ | |@LB@ 87 54@LB@@LB@@LB@Energy -12.00 kcal/mol@LB@Hybridization Energy -20.8979 kcal/mol@LB@Unfolding Energy - mRNA 6.12922 kcal/mol@LB@Unfolding Energy - sRNA 3.85824 kcal/mol@LB@@LB@Position - mRNA 146 -- 174@LB@Position - sRNA 55 -- 86@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 171 |
0.009384 |
0.1945 |
stm1741 |
N/A |
-12.47 |
0.287408 |
104 -- 168 |
71 -- 131 |
transporter |
|
_____________103_________________________________________________________________________169\n_____________|___________________________________________________________________________|\n5'-GAG...CGACC____CU__________U______CA______UUC___CCUUAAA_______C___A___U_____G_________AUUCG...UGU-3'\n______________GGUG__GGAAGGG_AG_UUUCGC__UGCCGU___CUG_______GUAGACC_GUU_UAA_CGCAA_GGC_UGACA\n______________:|||__::|||||_||_|:||||__|:||||___|||_______|:|||||_:||_:||_|:|||_::|_::|||\n______________UCAC__UUUUCCC_UC_AGAGCG__AUGGCA___GAC_______CGUCUGG_UAA_GUU_GUGUU_UUG_GUUGU\n3'-UUU...GUCCU____U________A_________________CCA___UUAG__________U___C___U_____G___U_____AGUGU...UCA-5'\n_____________|___________________________________________________________________________|\n_____________132_________________________________________________________________________70\n |
139 -- 145 |
95 -- 101 |
-55.0636 kcal/mol |
20.4542 kcal/mol |
20.5091 kcal/mol |
103 169@LB@ | |@LB@5'-GAG...CGACC CU U CA UUC CCUUAAA C A U G AUUCG...UGU-3'@LB@ GGUG GGAAGGG AG UUUCGC UGCCGU CUG GUAGACC GUU UAA CGCAA GGC UGACA@LB@ :||| ::||||| || |:|||| |:|||| ||| |:||||| :|| :|| |:||| ::| ::|||@LB@ UCAC UUUUCCC UC AGAGCG AUGGCA GAC CGUCUGG UAA GUU GUGUU UUG GUUGU@LB@3'-UUU...GUCCU U A CCA UUAG U C U G U AGUGU...UCA-5'@LB@ | |@LB@ 132 70@LB@@LB@@LB@Energy -12.47 kcal/mol@LB@Hybridization Energy -55.0636 kcal/mol@LB@Unfolding Energy - mRNA 20.4542 kcal/mol@LB@Unfolding Energy - sRNA 20.5091 kcal/mol@LB@@LB@Position - mRNA 104 -- 168@LB@Position - sRNA 71 -- 131@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 95 -- 101@LB@ |
| 127 |
0.006343 |
0.1774 |
stm1751 |
hns |
-12.42 |
0.292757 |
1 -- 14 |
147 -- 162 |
transcriptional regulator |
|
______________1_______________15\n______________|_______________|\n___________5'-________________AUCCC...UAG-3'\n______________GACAGAC__GGUGAGU\n______________|||||||__|||:|:|\n______________CUGUCUG__CCAUUUA\n3'-UUU...GAUAC_______UC_______CAUGU...UCA-5'\n_____________|________________|\n_____________163______________146\n |
8 -- 14 |
147 -- 153 |
-17.2475 kcal/mol |
3.56352 kcal/mol |
3.32093 kcal/mol |
1 15@LB@ | |@LB@ 5'- AUCCC...UAG-3'@LB@ GACAGAC GGUGAGU@LB@ ||||||| |||:|:|@LB@ CUGUCUG CCAUUUA@LB@3'-UUU...GAUAC UC CAUGU...UCA-5'@LB@ | |@LB@ 163 146@LB@@LB@@LB@Energy -12.42 kcal/mol@LB@Hybridization Energy -17.2475 kcal/mol@LB@Unfolding Energy - mRNA 3.56352 kcal/mol@LB@Unfolding Energy - sRNA 3.32093 kcal/mol@LB@@LB@Position - mRNA 1 -- 14@LB@Position - sRNA 147 -- 162@LB@Position Seed - mRNA 8 -- 14@LB@Position Seed - sRNA 147 -- 153@LB@ |
| 49 |
0.001802 |
0.1291 |
stm1787 |
N/A |
-18.29 |
0.033902 |
137 -- 202 |
34 -- 90 |
[Ni/Fe] hydrogenase large subunit |
|
_____________136__________________203\n_____________|____________________|\n5'-GGC...CCAAC________C___________GUUAG...GCG-3'\n______________GUAAACGC_ACAA_ACAACA\n______________|:||||:|_||||_||||||\n______________CGUUUGUG_UGUU_UGUUGU\n3'-UUU...GUUAA________U____G______AGUGU...UCA-5'\n_____________|____________________|\n_____________91___________________33\n |
138 -- 144 |
83 -- 89 |
-18.7581 kcal/mol |
1.39906 kcal/mol |
3.80671 kcal/mol |
136 203@LB@ | |@LB@5'-GGC...CCAAC C GUUAG...GCG-3'@LB@ GUAAACGC ACAA ACAACA@LB@ |:||||:| |||| ||||||@LB@ CGUUUGUG UGUU UGUUGU@LB@3'-UUU...GUUAA U G AGUGU...UCA-5'@LB@ | |@LB@ 91 33@LB@@LB@@LB@Energy -18.29 kcal/mol@LB@Hybridization Energy -18.7581 kcal/mol@LB@Unfolding Energy - mRNA 1.39906 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 137 -- 202@LB@Position - sRNA 34 -- 90@LB@Position Seed - mRNA 138 -- 144@LB@Position Seed - sRNA 83 -- 89@LB@ |
| 27 |
0.0006872 |
0.08814 |
stm1806 |
nhaB |
-13.59 |
0.196266 |
64 -- 136 |
66 -- 135 |
Na+/H+ antiporter NhaB |
|
_____________63___________________________________________________________________________137\n_____________|____________________________________________________________________________|\n5'-AGC...AUGAA_________GAUCAAG______AUU______U_____CU______AUC_U____G__UU__UU____U________CUCGC...CAU-3'\n______________GAAAAAGGG_______GC_ACC____UCUGA_AUCGC__GCCAAU___G_UAAG_AC__GC__GCAU__CGUCGCG\n______________|||||||||_______||_|||____|||||_|||||__:|||||___|_:||:_||__:|__:||:__|:||:|:\n______________CUUUUUCCC_______CG_UGG____AGACU_UAGCG__UGGUUA___C_GUUU_UG__UG__UGUG__GUAGUGU\n3'-UUU...CUUCA_________AUCAGAG__A___CACC___________UC______A________G__U___U_____UU_______UGGCA...UCA-5'\n_____________|____________________________________________________________________________|\n_____________136__________________________________________________________________________65\n |
130 -- 136 |
66 -- 72 |
-51.3167 kcal/mol |
14.8404 kcal/mol |
22.5826 kcal/mol |
63 137@LB@ | |@LB@5'-AGC...AUGAA GAUCAAG AUU U CU AUC U G UU UU U CUCGC...CAU-3'@LB@ GAAAAAGGG GC ACC UCUGA AUCGC GCCAAU G UAAG AC GC GCAU CGUCGCG@LB@ ||||||||| || ||| ||||| ||||| :||||| | :||: || :| :||: |:||:|:@LB@ CUUUUUCCC CG UGG AGACU UAGCG UGGUUA C GUUU UG UG UGUG GUAGUGU@LB@3'-UUU...CUUCA AUCAGAG A CACC UC A G U U UU UGGCA...UCA-5'@LB@ | |@LB@ 136 65@LB@@LB@@LB@Energy -13.59 kcal/mol@LB@Hybridization Energy -51.3167 kcal/mol@LB@Unfolding Energy - mRNA 14.8404 kcal/mol@LB@Unfolding Energy - sRNA 22.5826 kcal/mol@LB@@LB@Position - mRNA 64 -- 136@LB@Position - sRNA 66 -- 135@LB@Position Seed - mRNA 130 -- 136@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 145 |
0.007435 |
0.1826 |
stm1822 |
yoaB |
-15.17 |
0.110813 |
243 -- 269 |
162 -- 185 |
similar to E. coli orf hypothetical protein (AAC74879.1); Blastp hit to AAC74879.1 (130 aa) 92% identity in aa 17 - 130 |
|
_____________242______________________270\n_____________|________________________|\n5'-GUG...AUUUG___AG_____UAU_U_________AAGGC...CCG-3'\n______________CAC___GGAU___G_CAGGGUAGA\n______________|||___|||:___|_|||||||:|\n______________GUG___CCUG___C_GUCCCAUUU\n3'-UUU...AAUUA___AUA____U___U_________ACAUG...UCA-5'\n_____________|________________________|\n_____________186______________________161\n |
106 -- 112 |
148 -- 154 |
-19.875 kcal/mol |
5.9246 kcal/mol |
4.20228 kcal/mol |
242 270@LB@ | |@LB@5'-GUG...AUUUG AG UAU U AAGGC...CCG-3'@LB@ CAC GGAU G CAGGGUAGA@LB@ ||| |||: | |||||||:|@LB@ GUG CCUG C GUCCCAUUU@LB@3'-UUU...AAUUA AUA U U ACAUG...UCA-5'@LB@ | |@LB@ 186 161@LB@@LB@@LB@Energy -15.17 kcal/mol@LB@Hybridization Energy -19.875 kcal/mol@LB@Unfolding Energy - mRNA 5.9246 kcal/mol@LB@Unfolding Energy - sRNA 4.20228 kcal/mol@LB@@LB@Position - mRNA 243 -- 269@LB@Position - sRNA 162 -- 185@LB@Position Seed - mRNA 106 -- 112@LB@Position Seed - sRNA 148 -- 154@LB@ |
| 118 |
0.005761 |
0.1738 |
stm1840 |
yobG |
-17.14 |
0.052758 |
234 -- 267 |
153 -- 188 |
PhoP regulon feedback inhibition protein MgrB |
|
_____________233____________________________________________________________________________________268\n_____________|______________________________________________________________________________________|\n5'-ACA...AGAGU___________AUUUCGAU____C_U_____GC________GGUA______U___U_____UGU________GUGUU_________GUGCG...AAU-3'\n______________GGAGUGAAAAA________GGGU_G_UCUCG__AUCGUGGU_______GUA_GCC_GUUGC___GGGCGCAG_____UAAUAUCAU\n______________|:|||||||||________||||_|_|||||__|:||||||_______|:|_:||_:||||___:::|:||:_____:||:||||:\n______________CUUCACUUUUU________CCCA_C_AGAGC__UGGCACCA_______CGU_UGG_UAACG___UUUGUGUU_____GUUGUAGUG\n3'-UUU...AUGUC_______________________U_______GA________GACUUAG___C___U________________GUUGU_________UUGGC...UCA-5'\n_____________|______________________________________________________________________________________|\n_____________189____________________________________________________________________________________152\n |
274 -- 280 |
67 -- 73 |
-62.0847 kcal/mol |
28.922 kcal/mol |
22.0106 kcal/mol |
233 268@LB@ | |@LB@5'-ACA...AGAGU AUUUCGAU C U GC GGUA U U UGU GUGUU GUGCG...AAU-3'@LB@ GGAGUGAAAAA GGGU G UCUCG AUCGUGGU GUA GCC GUUGC GGGCGCAG UAAUAUCAU@LB@ |:||||||||| |||| | ||||| |:|||||| |:| :|| :|||| :::|:||: :||:||||:@LB@ CUUCACUUUUU CCCA C AGAGC UGGCACCA CGU UGG UAACG UUUGUGUU GUUGUAGUG@LB@3'-UUU...AUGUC U GA GACUUAG C U GUUGU UUGGC...UCA-5'@LB@ | |@LB@ 189 152@LB@@LB@@LB@Energy -17.14 kcal/mol@LB@Hybridization Energy -62.0847 kcal/mol@LB@Unfolding Energy - mRNA 28.922 kcal/mol@LB@Unfolding Energy - sRNA 22.0106 kcal/mol@LB@@LB@Position - mRNA 234 -- 267@LB@Position - sRNA 153 -- 188@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 32 |
0.001017 |
0.1132 |
stm1874 |
N/A |
-30.35 |
0.000300 |
5 -- 53 |
36 -- 83 |
putative inner membrane protein |
|
_____________4__________________________________________________54\n_____________|__________________________________________________|\n_______5'-GGUU___________C______U____CUC________________A_______CCGGC...CCG-3'\n______________CAGCGGCGCAA_CAUUAC_GGCC___AG_CAAGAGCUCAUCA_AACGCGC\n______________||:|::|:|||_|||:||_::||___||_|||:|||:|||||_|||:|||\n______________GUUGUUGUGUU_GUAGUG_UUGG___UC_GUUUUCGGGUAGU_UUGUGCG\n3'-UUU...UUUGU_______________________CAU__G_____________C_______UAAGG...UCA-5'\n_____________|__________________________________________________|\n_____________84_________________________________________________35\n |
47 -- 53 |
36 -- 42 |
-54.7325 kcal/mol |
11.1988 kcal/mol |
22.0738 kcal/mol |
4 54@LB@ | |@LB@ 5'-GGUU C U CUC A CCGGC...CCG-3'@LB@ CAGCGGCGCAA CAUUAC GGCC AG CAAGAGCUCAUCA AACGCGC@LB@ ||:|::|:||| |||:|| ::|| || |||:|||:||||| |||:|||@LB@ GUUGUUGUGUU GUAGUG UUGG UC GUUUUCGGGUAGU UUGUGCG@LB@3'-UUU...UUUGU CAU G C UAAGG...UCA-5'@LB@ | |@LB@ 84 35@LB@@LB@@LB@Energy -30.35 kcal/mol@LB@Hybridization Energy -54.7325 kcal/mol@LB@Unfolding Energy - mRNA 11.1988 kcal/mol@LB@Unfolding Energy - sRNA 22.0738 kcal/mol@LB@@LB@Position - mRNA 5 -- 53@LB@Position - sRNA 36 -- 83@LB@Position Seed - mRNA 47 -- 53@LB@Position Seed - sRNA 36 -- 42@LB@ |
