| 71 |
0.003482 |
0.1727 |
b4046 |
zur |
-8.96 |
0.216158 |
254 -- 300 |
53 -- 94 |
transcriptional repressor Zn(II)-binding |
|
_____________253__________________________________________________300\n_____________|____________________________________________________|\n5'-UAA...UGCGC__A___U___________UGACCCCAC______U___________________-3'\n______________GC_GCG_AAUG_UGCGCC_________AGCGCC__GGAAGU____GUUGCGCC\n______________||_|||_|||:_||||||_________|:|:||__||||:|____|:||||||\n______________CG_CGC_UUAU_ACGCGG_________UUGUGG__CCUUUA____CGACGCGG\n3'-UUU...CCCCA___________G_____________________UC______GAAC________CAUUU...GUG-5'\n_____________|_____________________________________________________|\n_____________95____________________________________________________52\n |
294 -- 300 |
53 -- 59 |
-43.5981 kcal/mol |
17.5702 kcal/mol |
17.0684 kcal/mol |
253 300@LB@ | |@LB@5'-UAA...UGCGC A U UGACCCCAC U -3'@LB@ GC GCG AAUG UGCGCC AGCGCC GGAAGU GUUGCGCC@LB@ || ||| |||: |||||| |:|:|| ||||:| |:||||||@LB@ CG CGC UUAU ACGCGG UUGUGG CCUUUA CGACGCGG@LB@3'-UUU...CCCCA G UC GAAC CAUUU...GUG-5'@LB@ | |@LB@ 95 52@LB@@LB@@LB@Energy -8.96 kcal/mol@LB@Hybridization Energy -43.5981 kcal/mol@LB@Unfolding Energy - mRNA 17.5702 kcal/mol@LB@Unfolding Energy - sRNA 17.0684 kcal/mol@LB@@LB@Position - mRNA 254 -- 300@LB@Position - sRNA 53 -- 94@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 72 |
0.00375 |
0.1804 |
b0386 |
proC |
-10.69 |
0.102749 |
216 -- 233 |
53 -- 70 |
pyrroline-5-carboxylate reductase NAD(P)-binding |
|
_____________215________________234\n_____________|__________________|\n5'-CAU...AAAUC__UUUUA_________G_AAUAU...GGG-3'\n______________GG_____UUGGCUGCG_C\n______________||_____|||||||||_|\n______________CC_____AACCGACGC_G\n3'-UUU...UGGUC__UUUAG_________G_CAUUU...GUG-5'\n_____________|__________________|\n_____________71_________________52\n |
225 -- 231 |
55 -- 61 |
-21.889 kcal/mol |
4.36146 kcal/mol |
6.83419 kcal/mol |
215 234@LB@ | |@LB@5'-CAU...AAAUC UUUUA G AAUAU...GGG-3'@LB@ GG UUGGCUGCG C@LB@ || ||||||||| |@LB@ CC AACCGACGC G@LB@3'-UUU...UGGUC UUUAG G CAUUU...GUG-5'@LB@ | |@LB@ 71 52@LB@@LB@@LB@Energy -10.69 kcal/mol@LB@Hybridization Energy -21.889 kcal/mol@LB@Unfolding Energy - mRNA 4.36146 kcal/mol@LB@Unfolding Energy - sRNA 6.83419 kcal/mol@LB@@LB@Position - mRNA 216 -- 233@LB@Position - sRNA 53 -- 70@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 73 |
0.003782 |
0.1804 |
b3560 |
glyQ |
-10.80 |
0.098141 |
7 -- 31 |
51 -- 74 |
glycine tRNA synthetase alpha subunit |
|
_____________6__________________________32\n_____________|__________________________|\n_____5'-ACAGUU____________A__AAA_____G__UAUAC...UGG-3'\n______________CCAGGGAAG_CU_UG___UGCGC_GU\n______________||||||||:_||_||___|||||_||\n______________GGUCCCUUU_GA_AC___ACGCG_CA\n3'-UUU...GUUGU_________A_____CG______G__UUUAA...GUG-5'\n_____________|__________________________|\n_____________75_________________________50\n |
9 -- 15 |
66 -- 72 |
-27.2651 kcal/mol |
7.67928 kcal/mol |
8.78847 kcal/mol |
6 32@LB@ | |@LB@ 5'-ACAGUU A AAA G UAUAC...UGG-3'@LB@ CCAGGGAAG CU UG UGCGC GU@LB@ ||||||||: || || ||||| ||@LB@ GGUCCCUUU GA AC ACGCG CA@LB@3'-UUU...GUUGU A CG G UUUAA...GUG-5'@LB@ | |@LB@ 75 50@LB@@LB@@LB@Energy -10.80 kcal/mol@LB@Hybridization Energy -27.2651 kcal/mol@LB@Unfolding Energy - mRNA 7.67928 kcal/mol@LB@Unfolding Energy - sRNA 8.78847 kcal/mol@LB@@LB@Position - mRNA 7 -- 31@LB@Position - sRNA 51 -- 74@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 74 |
0.003792 |
0.1804 |
b2520 |
yfhM |
-12.28 |
0.050623 |
263 -- 298 |
53 -- 91 |
bacterial alpha2-macroglobulin colonization factor ECAM; anti-host protease defense factor; periplasmic inner membrane-anchored lipoprotein |
|
_____________262_____________________________________299\n_____________|_______________________________________|\n5'-CUC...AACAA___UA____________G___U____AAAGA________UU-3'\n______________CGA__AC_GCGCCAACA_CGG_GAAA_______UGCGCC\n______________|||__||_|||||||||_|:|_||||_______||||||\n______________GCU__UG_CGCGGUUGU_GUC_CUUU_______ACGCGG\n3'-UUU...CACGC___UA__A_________G___C____AGAACCG______CAUUU...GUG-5'\n_____________|_______________________________________|\n_____________92______________________________________52\n |
272 -- 278 |
75 -- 81 |
-39.9109 kcal/mol |
10.9563 kcal/mol |
16.677 kcal/mol |
262 299@LB@ | |@LB@5'-CUC...AACAA UA G U AAAGA UU-3'@LB@ CGA AC GCGCCAACA CGG GAAA UGCGCC@LB@ ||| || ||||||||| |:| |||| ||||||@LB@ GCU UG CGCGGUUGU GUC CUUU ACGCGG@LB@3'-UUU...CACGC UA A G C AGAACCG CAUUU...GUG-5'@LB@ | |@LB@ 92 52@LB@@LB@@LB@Energy -12.28 kcal/mol@LB@Hybridization Energy -39.9109 kcal/mol@LB@Unfolding Energy - mRNA 10.9563 kcal/mol@LB@Unfolding Energy - sRNA 16.677 kcal/mol@LB@@LB@Position - mRNA 263 -- 298@LB@Position - sRNA 53 -- 91@LB@Position Seed - mRNA 272 -- 278@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 75 |
0.003854 |
0.1809 |
b0606 |
ahpF |
-8.17 |
0.297536 |
59 -- 82 |
64 -- 85 |
alkyl hydroperoxide reductase F52a subunit FAD/NAD(P)-binding |
|
_____________58_______________________83\n_____________|________________________|\n5'-UCA...UUGCU___A___GA______UC_______CACCU...CGG-3'\n______________CUG_CGC__AAUACU__GGAAAUU\n______________|||_|||__||:||:__||||||:\n______________GAC_GCG__UUGUGG__CCUUUAG\n3'-UUU...CUUAU_______G_______UC_______AACCG...GUG-5'\n_____________|________________________|\n_____________86_______________________63\n |
76 -- 82 |
64 -- 70 |
-19.6667 kcal/mol |
4.11652 kcal/mol |
7.38387 kcal/mol |
58 83@LB@ | |@LB@5'-UCA...UUGCU A GA UC CACCU...CGG-3'@LB@ CUG CGC AAUACU GGAAAUU@LB@ ||| ||| ||:||: ||||||:@LB@ GAC GCG UUGUGG CCUUUAG@LB@3'-UUU...CUUAU G UC AACCG...GUG-5'@LB@ | |@LB@ 86 63@LB@@LB@@LB@Energy -8.17 kcal/mol@LB@Hybridization Energy -19.6667 kcal/mol@LB@Unfolding Energy - mRNA 4.11652 kcal/mol@LB@Unfolding Energy - sRNA 7.38387 kcal/mol@LB@@LB@Position - mRNA 59 -- 82@LB@Position - sRNA 64 -- 85@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 64 -- 70@LB@ |
| 76 |
0.003978 |
0.182 |
b0336 |
codB |
-6.71 |
0.504284 |
39 -- 48 |
1 -- 11 |
cytosine transporter |
|
_____________38__________49\n_____________|___________|\n5'-CCA...UCUUA___________CCACU...UUU-3'\n______________UCAGGCC_UAC\n______________|||||||_:||\n______________AGUCCGG_GUG\n3'-UUU...CAAAA_______C___-5'\n_____________|__________|\n_____________12_________1\n |
39 -- 45 |
5 -- 11 |
-14.8291 kcal/mol |
2.46298 kcal/mol |
5.60325 kcal/mol |
38 49@LB@ | |@LB@5'-CCA...UCUUA CCACU...UUU-3'@LB@ UCAGGCC UAC@LB@ ||||||| :||@LB@ AGUCCGG GUG@LB@3'-UUU...CAAAA C -5'@LB@ | |@LB@ 12 1@LB@@LB@@LB@Energy -6.71 kcal/mol@LB@Hybridization Energy -14.8291 kcal/mol@LB@Unfolding Energy - mRNA 2.46298 kcal/mol@LB@Unfolding Energy - sRNA 5.60325 kcal/mol@LB@@LB@Position - mRNA 39 -- 48@LB@Position - sRNA 1 -- 11@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 77 |
0.00398 |
0.182 |
b2411 |
ligA |
-14.36 |
0.019662 |
79 -- 95 |
70 -- 86 |
DNA ligase NAD(+)-dependent |
|
_____________78________________96\n_____________|_________________|\n5'-GCA...CAGAA_______G_________ACAUC...CUG-3'\n______________AUUGCGC_AGUACCAGG\n______________|:|||||_|::||||||\n______________UGACGCG_UUGUGGUCC\n3'-UUU...GCUUA_______G_________CUUUA...GUG-5'\n_____________|_________________|\n_____________87________________69\n |
89 -- 95 |
70 -- 76 |
-25.4632 kcal/mol |
3.82569 kcal/mol |
7.27772 kcal/mol |
78 96@LB@ | |@LB@5'-GCA...CAGAA G ACAUC...CUG-3'@LB@ AUUGCGC AGUACCAGG@LB@ |:||||| |::||||||@LB@ UGACGCG UUGUGGUCC@LB@3'-UUU...GCUUA G CUUUA...GUG-5'@LB@ | |@LB@ 87 69@LB@@LB@@LB@Energy -14.36 kcal/mol@LB@Hybridization Energy -25.4632 kcal/mol@LB@Unfolding Energy - mRNA 3.82569 kcal/mol@LB@Unfolding Energy - sRNA 7.27772 kcal/mol@LB@@LB@Position - mRNA 79 -- 95@LB@Position - sRNA 70 -- 86@LB@Position Seed - mRNA 89 -- 95@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 78 |
0.004296 |
0.1855 |
b3258 |
panF |
-10.37 |
0.118507 |
142 -- 153 |
52 -- 62 |
pantothenate:sodium symporter |
|
_____________141__________154\n_____________|____________|\n5'-GGC...UUUAU___A________GGCGA...UUA-3'\n______________UGG_CUGUGCUG\n______________|||_|||:||:|\n______________ACC_GACGCGGC\n3'-UUU...UUAGA____________AUUUA...GUG-5'\n_____________|____________|\n_____________63___________51\n |
147 -- 153 |
52 -- 58 |
-17.1407 kcal/mol |
1.89201 kcal/mol |
4.8804 kcal/mol |
141 154@LB@ | |@LB@5'-GGC...UUUAU A GGCGA...UUA-3'@LB@ UGG CUGUGCUG@LB@ ||| |||:||:|@LB@ ACC GACGCGGC@LB@3'-UUU...UUAGA AUUUA...GUG-5'@LB@ | |@LB@ 63 51@LB@@LB@@LB@Energy -10.37 kcal/mol@LB@Hybridization Energy -17.1407 kcal/mol@LB@Unfolding Energy - mRNA 1.89201 kcal/mol@LB@Unfolding Energy - sRNA 4.8804 kcal/mol@LB@@LB@Position - mRNA 142 -- 153@LB@Position - sRNA 52 -- 62@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 79 |
0.004357 |
0.1855 |
b0008 |
talB |
-10.61 |
0.106795 |
240 -- 280 |
50 -- 88 |
transaldolase B |
|
_____________239________________________________________281\n_____________|__________________________________________|\n5'-AGG...CCACC___G_________________C___GC___AAUGAA______UCAAC...CAA-3'\n______________GUA_UG_GCCGACACUGGGGA_AUC__GGC______GCUGUA\n______________:||_||_|||:||||::||||_|||__|||______||:|||\n______________UAU_AC_CGGUUGUGGUCCCU_UAG__CCG______CGGCAU\n3'-UUU...GCGCU___G__G______________U___AA___ACG_________UUAAU...GUG-5'\n_____________|__________________________________________|\n_____________89_________________________________________49\n |
253 -- 259 |
68 -- 74 |
-44.9099 kcal/mol |
17.4497 kcal/mol |
16.8544 kcal/mol |
239 281@LB@ | |@LB@5'-AGG...CCACC G C GC AAUGAA UCAAC...CAA-3'@LB@ GUA UG GCCGACACUGGGGA AUC GGC GCUGUA@LB@ :|| || |||:||||::|||| ||| ||| ||:|||@LB@ UAU AC CGGUUGUGGUCCCU UAG CCG CGGCAU@LB@3'-UUU...GCGCU G G U AA ACG UUAAU...GUG-5'@LB@ | |@LB@ 89 49@LB@@LB@@LB@Energy -10.61 kcal/mol@LB@Hybridization Energy -44.9099 kcal/mol@LB@Unfolding Energy - mRNA 17.4497 kcal/mol@LB@Unfolding Energy - sRNA 16.8544 kcal/mol@LB@@LB@Position - mRNA 240 -- 280@LB@Position - sRNA 50 -- 88@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 68 -- 74@LB@ |
| 80 |
0.004451 |
0.1855 |
b3578 |
yiaN |
-12.19 |
0.052777 |
198 -- 212 |
52 -- 66 |
2 3-diketo-L-gulonate TRAP transporter large permease protein |
|
_____________197_____________213\n_____________|_______________|\n5'-GGC...GCUUA___A___________AUUUU...UCU-3'\n______________AUC_UGGCUGUGCUG\n______________|||_||||||:||:|\n______________UAG_ACCGACGCGGC\n3'-UUU...CCCUU___A___________AUUUA...GUG-5'\n_____________|_______________|\n_____________67______________51\n |
206 -- 212 |
52 -- 58 |
-22.6247 kcal/mol |
3.67694 kcal/mol |
6.76246 kcal/mol |
197 213@LB@ | |@LB@5'-GGC...GCUUA A AUUUU...UCU-3'@LB@ AUC UGGCUGUGCUG@LB@ ||| ||||||:||:|@LB@ UAG ACCGACGCGGC@LB@3'-UUU...CCCUU A AUUUA...GUG-5'@LB@ | |@LB@ 67 51@LB@@LB@@LB@Energy -12.19 kcal/mol@LB@Hybridization Energy -22.6247 kcal/mol@LB@Unfolding Energy - mRNA 3.67694 kcal/mol@LB@Unfolding Energy - sRNA 6.76246 kcal/mol@LB@@LB@Position - mRNA 198 -- 212@LB@Position - sRNA 52 -- 66@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 52 -- 58@LB@ |
