| 74 |
0.003449 |
0.1596 |
stm1129 |
N/A |
-19.64 |
0.020096 |
190 -- 238 |
139 -- 186 |
N-acetylmannosamine-6-phosphate 2-epimerase |
stm3337 |
_____________189__________________________________239\n_____________|____________________________________|\n5'-AUA...UGGAU________UAGC_____U__AACA_________C__AAACG...AAA-3'\n______________GUCACUAU____CAGGC_GG____AAGUGUACA_GA\n______________:|||||||____|||:|_||____||:||||||_||\n______________UAGUGAUA____GUCUG_CC____UUUACAUGU_CU\n3'-UUU...GUAAU________CCU______U__CA___________C__UCACU...UCA-5'\n_____________|____________________________________|\n_____________187__________________________________138\n |
229 -- 235 |
142 -- 148 |
-26.4502 kcal/mol |
8.56913 kcal/mol |
5.67007 kcal/mol |
189 239@LB@ | |@LB@5'-AUA...UGGAU UAGC U AACA C AAACG...AAA-3'@LB@ GUCACUAU CAGGC GG AAGUGUACA GA@LB@ :||||||| |||:| || ||:|||||| ||@LB@ UAGUGAUA GUCUG CC UUUACAUGU CU@LB@3'-UUU...GUAAU CCU U CA C UCACU...UCA-5'@LB@ | |@LB@ 187 138@LB@@LB@@LB@Energy -19.64 kcal/mol@LB@Hybridization Energy -26.4502 kcal/mol@LB@Unfolding Energy - mRNA 8.56913 kcal/mol@LB@Unfolding Energy - sRNA 5.67007 kcal/mol@LB@@LB@Position - mRNA 190 -- 238@LB@Position - sRNA 139 -- 186@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 142 -- 148@LB@ |
| 106 |
0.005253 |
0.1728 |
stm1172 |
flgM |
-15.84 |
0.086212 |
196 -- 254 |
36 -- 82 |
anti-sigma-28 factor FlgM |
|
_____________195________________255\n_____________|__________________|\n5'-GGC...GACGC__G_______________CCGGU...CGU-3'\n______________GC_AAAC_CAGCGACACG\n______________||_||||_||:|:||||:\n______________CG_UUUG_GUUGUUGUGU\n3'-UUU...GUUAA_______U__________UGUAG...UCA-5'\n_____________|__________________|\n_____________83_________________35\n |
263 -- 269 |
74 -- 80 |
-18.0556 kcal/mol |
5.48392 kcal/mol |
3.73436 kcal/mol |
195 255@LB@ | |@LB@5'-GGC...GACGC G CCGGU...CGU-3'@LB@ GC AAAC CAGCGACACG@LB@ || |||| ||:|:||||:@LB@ CG UUUG GUUGUUGUGU@LB@3'-UUU...GUUAA U UGUAG...UCA-5'@LB@ | |@LB@ 83 35@LB@@LB@@LB@Energy -15.84 kcal/mol@LB@Hybridization Energy -18.0556 kcal/mol@LB@Unfolding Energy - mRNA 5.48392 kcal/mol@LB@Unfolding Energy - sRNA 3.73436 kcal/mol@LB@@LB@Position - mRNA 196 -- 254@LB@Position - sRNA 36 -- 82@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 74 -- 80@LB@ |
| 166 |
0.009028 |
0.1932 |
stm1173 |
flgA |
-14.00 |
0.169768 |
53 -- 102 |
33 -- 85 |
flagella basal body P-ring formation protein FlgA |
|
_____________52__________________103\n_____________|___________________|\n5'-GCU...CCCUG___________GG______ACGCC...CCC-3'\n______________ACAAUGGCGCA__ACAUCA\n______________||||:::|:||__||||||\n______________UGUUGUUGUGU__UGUAGU\n3'-UUU...GUUUG___________________GUUGG...UCA-5'\n_____________|___________________|\n_____________86__________________32\n |
259 -- 265 |
74 -- 80 |
-16.6955 kcal/mol |
2.54166 kcal/mol |
4.84988 kcal/mol |
52 103@LB@ | |@LB@5'-GCU...CCCUG GG ACGCC...CCC-3'@LB@ ACAAUGGCGCA ACAUCA@LB@ ||||:::|:|| ||||||@LB@ UGUUGUUGUGU UGUAGU@LB@3'-UUU...GUUUG GUUGG...UCA-5'@LB@ | |@LB@ 86 32@LB@@LB@@LB@Energy -14.00 kcal/mol@LB@Hybridization Energy -16.6955 kcal/mol@LB@Unfolding Energy - mRNA 2.54166 kcal/mol@LB@Unfolding Energy - sRNA 4.84988 kcal/mol@LB@@LB@Position - mRNA 53 -- 102@LB@Position - sRNA 33 -- 85@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 74 -- 80@LB@ |
| 137 |
0.006825 |
0.1774 |
stm1196 |
acpP |
-14.14 |
0.161333 |
197 -- 223 |
36 -- 60 |
acyl carrier protein |
|
_____________196___________________________________________224\n_____________|_____________________________________________|\n5'-ACU...AGAAC_______GAAA_____C____A____CU__GCGUUAA________AAGUA...UGG-3'\n______________GCGUUAA____AUUAU_GGCG_ACAG__GG_______GCAGGAAG\n______________:|:||||____|:|||_|:|:_||||__||_______:|||||||\n______________UGUAAUU____UGAUA_CUGU_UGUC__CC_______UGUCCUUC\n3'-UUU...CACGA_______AG_______C____C________AUUUACA________ACUUU...UCA-5'\n_____________|_____________________________________________|\n_____________61____________________________________________35\n |
258 -- 264 |
137 -- 143 |
-28.6095 kcal/mol |
10.3633 kcal/mol |
7.13805 kcal/mol |
196 224@LB@ | |@LB@5'-ACU...AGAAC GAAA C A CU GCGUUAA AAGUA...UGG-3'@LB@ GCGUUAA AUUAU GGCG ACAG GG GCAGGAAG@LB@ :|:|||| |:||| |:|: |||| || :|||||||@LB@ UGUAAUU UGAUA CUGU UGUC CC UGUCCUUC@LB@3'-UUU...CACGA AG C C AUUUACA ACUUU...UCA-5'@LB@ | |@LB@ 61 35@LB@@LB@@LB@Energy -14.14 kcal/mol@LB@Hybridization Energy -28.6095 kcal/mol@LB@Unfolding Energy - mRNA 10.3633 kcal/mol@LB@Unfolding Energy - sRNA 7.13805 kcal/mol@LB@@LB@Position - mRNA 197 -- 223@LB@Position - sRNA 36 -- 60@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 137 -- 143@LB@ |
| 75 |
0.003517 |
0.1596 |
stm1214 |
ycfR |
-14.36 |
0.148951 |
168 -- 212 |
35 -- 81 |
multiple stress resistance protein BhsA |
stm0823 |
_____________167______________213\n_____________|________________|\n5'-AAA...ACCAC_________CA_____AUUCA...AAC-3'\n______________UUCUGGCUC___GAGU\n______________|||:|||||___:|||\n______________AAGGCCGAG___UUCA\n3'-UUU...AAAGC_________UCC____-5'\n_____________|_______________|\n_____________82______________35\n |
15 -- 21 |
8 -- 14 |
-15.9373 kcal/mol |
4.12962 kcal/mol |
4.82557 kcal/mol |
167 213@LB@ | |@LB@5'-AAA...ACCAC CA AUUCA...AAC-3'@LB@ UUCUGGCUC GAGU@LB@ |||:||||| :|||@LB@ AAGGCCGAG UUCA@LB@3'-UUU...AAAGC UCC -5'@LB@ | |@LB@ 82 35@LB@@LB@@LB@Energy -14.36 kcal/mol@LB@Hybridization Energy -15.9373 kcal/mol@LB@Unfolding Energy - mRNA 4.12962 kcal/mol@LB@Unfolding Energy - sRNA 4.82557 kcal/mol@LB@@LB@Position - mRNA 168 -- 212@LB@Position - sRNA 35 -- 81@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 9 |
0.0001316 |
0.05206 |
stm1221 |
cobB |
-19.79 |
0.018892 |
28 -- 73 |
51 -- 101 |
NAD-dependent protein deacylase |
|
_____________27__________________74\n_____________|___________________|\n5'-UCG...UUACG___________________UGGCG...UGG-3'\n______________GCA___AUAACAACGCAAC\n______________|||___|:||||||:||||\n______________CGU___UGUUGUUGUGUUG\n3'-UUU...GUUAA___UUG_____________UAGUG...UCA-5'\n_____________|___________________|\n_____________102_________________50\n |
57 -- 63 |
72 -- 78 |
-19.3364 kcal/mol |
2.6852 kcal/mol |
3.80362 kcal/mol |
27 74@LB@ | |@LB@5'-UCG...UUACG UGGCG...UGG-3'@LB@ GCA AUAACAACGCAAC@LB@ ||| |:||||||:||||@LB@ CGU UGUUGUUGUGUUG@LB@3'-UUU...GUUAA UUG UAGUG...UCA-5'@LB@ | |@LB@ 102 50@LB@@LB@@LB@Energy -19.79 kcal/mol@LB@Hybridization Energy -19.3364 kcal/mol@LB@Unfolding Energy - mRNA 2.6852 kcal/mol@LB@Unfolding Energy - sRNA 3.80362 kcal/mol@LB@@LB@Position - mRNA 28 -- 73@LB@Position - sRNA 51 -- 101@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 62 |
0.003015 |
0.1596 |
stm1299 |
gdhA |
-15.31 |
0.105026 |
136 -- 171 |
63 -- 91 |
glutamate dehydrogenase |
|
_____________135____________________________________172\n_____________|______________________________________|\n5'-CGG...AAAAC__________UAUUCUGAUAA_______A_________ACAUU...CCA-3'\n______________UGCAAAUACA___________AACGCAA___UACAACC\n______________||||||:|||___________|||:|||___:||||||\n______________ACGUUUGUGU___________UUGUGUU___GUGUUGG\n3'-UUU...GGUUA__________UG________________GUA_______CAUUC...UCA-5'\n_____________|______________________________________|\n_____________92_____________________________________62\n |
165 -- 171 |
63 -- 69 |
-26.3361 kcal/mol |
2.66287 kcal/mol |
8.61685 kcal/mol |
135 172@LB@ | |@LB@5'-CGG...AAAAC UAUUCUGAUAA A ACAUU...CCA-3'@LB@ UGCAAAUACA AACGCAA UACAACC@LB@ ||||||:||| |||:||| :||||||@LB@ ACGUUUGUGU UUGUGUU GUGUUGG@LB@3'-UUU...GGUUA UG GUA CAUUC...UCA-5'@LB@ | |@LB@ 92 62@LB@@LB@@LB@Energy -15.31 kcal/mol@LB@Hybridization Energy -26.3361 kcal/mol@LB@Unfolding Energy - mRNA 2.66287 kcal/mol@LB@Unfolding Energy - sRNA 8.61685 kcal/mol@LB@@LB@Position - mRNA 136 -- 171@LB@Position - sRNA 63 -- 91@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 42 |
0.001433 |
0.1215 |
stm1318 |
katE |
-13.62 |
0.194137 |
191 -- 230 |
43 -- 82 |
catalase HPII |
|
_____________190_________231\n_____________|___________|\n5'-GGC...UCUGC___________UCCCC...AUC-3'\n______________CGUUCCG_CUC\n______________|||||||_|||\n______________GCAAGGC_GAG\n3'-UUU...GAAAA_______C___UCCUUCA-5'\n_____________|___________|\n_____________83__________42\n |
99 -- 105 |
12 -- 18 |
-14.968 kcal/mol |
1.4568 kcal/mol |
6.53351 kcal/mol |
190 231@LB@ | |@LB@5'-GGC...UCUGC UCCCC...AUC-3'@LB@ CGUUCCG CUC@LB@ ||||||| |||@LB@ GCAAGGC GAG@LB@3'-UUU...GAAAA C UCCUUCA-5'@LB@ | |@LB@ 83 42@LB@@LB@@LB@Energy -13.62 kcal/mol@LB@Hybridization Energy -14.968 kcal/mol@LB@Unfolding Energy - mRNA 1.4568 kcal/mol@LB@Unfolding Energy - sRNA 6.53351 kcal/mol@LB@@LB@Position - mRNA 191 -- 230@LB@Position - sRNA 43 -- 82@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 44 |
0.001631 |
0.1267 |
stm1318 |
katE |
-13.62 |
0.194137 |
191 -- 230 |
43 -- 82 |
catalase HPII |
|
_____________190_________231\n_____________|___________|\n5'-GGC...UCUGC___________UCCCC...AUC-3'\n______________CGUUCCG_CUC\n______________|||||||_|||\n______________GCAAGGC_GAG\n3'-UUU...GAAAA_______C___UCCUUCA-5'\n_____________|___________|\n_____________83__________42\n |
99 -- 105 |
12 -- 18 |
-14.968 kcal/mol |
1.4568 kcal/mol |
6.53351 kcal/mol |
190 231@LB@ | |@LB@5'-GGC...UCUGC UCCCC...AUC-3'@LB@ CGUUCCG CUC@LB@ ||||||| |||@LB@ GCAAGGC GAG@LB@3'-UUU...GAAAA C UCCUUCA-5'@LB@ | |@LB@ 83 42@LB@@LB@@LB@Energy -13.62 kcal/mol@LB@Hybridization Energy -14.968 kcal/mol@LB@Unfolding Energy - mRNA 1.4568 kcal/mol@LB@Unfolding Energy - sRNA 6.53351 kcal/mol@LB@@LB@Position - mRNA 191 -- 230@LB@Position - sRNA 43 -- 82@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 35 |
0.001151 |
0.1171 |
stm1336 |
rplT |
-16.07 |
0.079235 |
51 -- 96 |
49 -- 98 |
50S ribosomal protein L20 |
|
_____________50_________________________________________97\n_____________|__________________________________________|\n5'-ACC...AAAAA______UA____UA__________CUG_______________AUGGU...GCG-3'\n______________GC_GAC__AACG____AACGUCAC___CGU___CCGAAAGCC\n______________||_:||__|||:____|||:||||___|||___||:||||||\n______________CG_UUG__UUGU____UUGUAGUG___GCA___GGUUUUCGG\n3'-UUU...GUUAA__U___UG____UGUG________UUG___UUC_________GUAGU...UCA-5'\n_____________|__________________________________________|\n_____________99_________________________________________48\n |
75 -- 81 |
67 -- 73 |
-32.5949 kcal/mol |
8.04744 kcal/mol |
15.2217 kcal/mol |
50 97@LB@ | |@LB@5'-ACC...AAAAA UA UA CUG AUGGU...GCG-3'@LB@ GC GAC AACG AACGUCAC CGU CCGAAAGCC@LB@ || :|| |||: |||:|||| ||| ||:||||||@LB@ CG UUG UUGU UUGUAGUG GCA GGUUUUCGG@LB@3'-UUU...GUUAA U UG UGUG UUG UUC GUAGU...UCA-5'@LB@ | |@LB@ 99 48@LB@@LB@@LB@Energy -16.07 kcal/mol@LB@Hybridization Energy -32.5949 kcal/mol@LB@Unfolding Energy - mRNA 8.04744 kcal/mol@LB@Unfolding Energy - sRNA 15.2217 kcal/mol@LB@@LB@Position - mRNA 51 -- 96@LB@Position - sRNA 49 -- 98@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 67 -- 73@LB@ |
