4 |
5.758e-05 |
0.04123 |
stm3564 |
livK |
-17.90 |
0.039430 |
157 -- 215 |
37 -- 90 |
leucine ABC transporter subunit substrate-binding protein LivK |
|
_____________156______________________216\n_____________|________________________|\n5'-UUU...GCAAA_____A__________________AUGGG...CGA-3'\n______________AAACA_AAC_AUAUAACAUCACGA\n______________|||||_|||_|:|:||||||||:|\n______________UUUGU_UUG_UGUGUUGUAGUGUU\n3'-UUU...UAACG_____G___U______________GGCAU...UCA-5'\n_____________|________________________|\n_____________91_______________________36\n |
178 -- 184 |
65 -- 71 |
-21.8749 kcal/mol |
0.694231 kcal/mol |
6.38817 kcal/mol |
156 216@LB@ | |@LB@5'-UUU...GCAAA A AUGGG...CGA-3'@LB@ AAACA AAC AUAUAACAUCACGA@LB@ ||||| ||| |:|:||||||||:|@LB@ UUUGU UUG UGUGUUGUAGUGUU@LB@3'-UUU...UAACG G U GGCAU...UCA-5'@LB@ | |@LB@ 91 36@LB@@LB@@LB@Energy -17.90 kcal/mol@LB@Hybridization Energy -21.8749 kcal/mol@LB@Unfolding Energy - mRNA 0.694231 kcal/mol@LB@Unfolding Energy - sRNA 6.38817 kcal/mol@LB@@LB@Position - mRNA 157 -- 215@LB@Position - sRNA 37 -- 90@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 65 -- 71@LB@ |
90 |
0.004161 |
0.1596 |
stm1124 |
putA |
-17.89 |
0.039481 |
159 -- 201 |
125 -- 168 |
trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase |
|
_____________158______________________________________________202\n_____________|________________________________________________|\n5'-UAA...CGCUA____U___UUA________A_C____A_____________________UGGGA...UAA-3'\n______________ACUA_UGG___GCAGAUAG_G_GAAU__ACAGG_AGU___AGAGGGUA\n______________||||_|||___:||||:||_|_:|||__|||||_|||___|:||||||\n______________UGAU_ACC___UGUCUGUC_C_UUUA__UGUCC_UCA___UUUCCCAU\n3'-UUU...AUUAG___________________C_A____CA_____U___CUU________CAGAG...UCA-5'\n_____________|________________________________________________|\n_____________169______________________________________________124\n |
195 -- 201 |
125 -- 131 |
-33.9858 kcal/mol |
7.26317 kcal/mol |
8.4265 kcal/mol |
158 202@LB@ | |@LB@5'-UAA...CGCUA U UUA A C A UGGGA...UAA-3'@LB@ ACUA UGG GCAGAUAG G GAAU ACAGG AGU AGAGGGUA@LB@ |||| ||| :||||:|| | :||| ||||| ||| |:||||||@LB@ UGAU ACC UGUCUGUC C UUUA UGUCC UCA UUUCCCAU@LB@3'-UUU...AUUAG C A CA U CUU CAGAG...UCA-5'@LB@ | |@LB@ 169 124@LB@@LB@@LB@Energy -17.89 kcal/mol@LB@Hybridization Energy -33.9858 kcal/mol@LB@Unfolding Energy - mRNA 7.26317 kcal/mol@LB@Unfolding Energy - sRNA 8.4265 kcal/mol@LB@@LB@Position - mRNA 159 -- 201@LB@Position - sRNA 125 -- 168@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 125 -- 131@LB@ |
131 |
0.006551 |
0.1774 |
stm3217 |
aer |
-17.88 |
0.039631 |
254 -- 298 |
36 -- 77 |
senses cellular redox state or proton motive force; similar to E. coli aerotaxis sensor receptor flavoprotein (AAC76107.1); Blastp hit to AAC76107.1 (506 aa) 83% identity in aa 1 - 506 |
|
_____________253____________________________________________________________________________________299\n_____________|______________________________________________________________________________________|\n5'-UUU...AAGGC______UGA_____________________ACAAA____AA__AUU____________________UC__G______UUUA_____UAAAG...CCA-3'\n______________GCAGGA___GGUGAAAA_________UCGU_____UAUU__GG____AAUCGCA____AAUUGCGA__CA_AGCAAU____ACAAC\n______________:|||||___:|||||||_________|||:_____||::__||____|||||||____||||||:|__||_|:|||:____|||||\n______________UGUCCU___UCACUUUU_________AGCG_____AUGG__CC____UUAGCGU____UUAACGUU__GU_UUGUUG____UGUUG\n3'-UUU...UUACA_________________UCCCAUCAG_____________CA__AGAC_______CUGG________U___G_______________UAGUG...UCA-5'\n_____________|______________________________________________________________________________________|\n_____________78_____________________________________________________________________________________35\n |
89 -- 95 |
99 -- 105 |
-43.6348 kcal/mol |
13.4466 kcal/mol |
20.9633 kcal/mol |
253 299@LB@ | |@LB@5'-UUU...AAGGC UGA ACAAA AA AUU UC G UUUA UAAAG...CCA-3'@LB@ GCAGGA GGUGAAAA UCGU UAUU GG AAUCGCA AAUUGCGA CA AGCAAU ACAAC@LB@ :||||| :||||||| |||: ||:: || ||||||| ||||||:| || |:|||: |||||@LB@ UGUCCU UCACUUUU AGCG AUGG CC UUAGCGU UUAACGUU GU UUGUUG UGUUG@LB@3'-UUU...UUACA UCCCAUCAG CA AGAC CUGG U G UAGUG...UCA-5'@LB@ | |@LB@ 78 35@LB@@LB@@LB@Energy -17.88 kcal/mol@LB@Hybridization Energy -43.6348 kcal/mol@LB@Unfolding Energy - mRNA 13.4466 kcal/mol@LB@Unfolding Energy - sRNA 20.9633 kcal/mol@LB@@LB@Position - mRNA 254 -- 298@LB@Position - sRNA 36 -- 77@LB@Position Seed - mRNA 89 -- 95@LB@Position Seed - sRNA 99 -- 105@LB@ |
31 |
0.0007673 |
0.08814 |
stm0403 |
yajB |
-17.88 |
0.039643 |
23 -- 70 |
41 -- 90 |
ACP phosphodiesterase |
|
_____________22_____________71\n_____________|______________|\n5'-CCC...GGGUA_______AU_____AUUCG...AUU-3'\n______________GUGGGCA__CAGGG\n______________:|||:||__|||||\n______________UACCUGU__GUCCC\n3'-UUU...AGUGA_______CU_____AUUUA...UCA-5'\n_____________|______________|\n_____________91_____________40\n |
57 -- 63 |
159 -- 165 |
-19.6891 kcal/mol |
4.4153 kcal/mol |
3.13232 kcal/mol |
22 71@LB@ | |@LB@5'-CCC...GGGUA AU AUUCG...AUU-3'@LB@ GUGGGCA CAGGG@LB@ :|||:|| |||||@LB@ UACCUGU GUCCC@LB@3'-UUU...AGUGA CU AUUUA...UCA-5'@LB@ | |@LB@ 91 40@LB@@LB@@LB@Energy -17.88 kcal/mol@LB@Hybridization Energy -19.6891 kcal/mol@LB@Unfolding Energy - mRNA 4.4153 kcal/mol@LB@Unfolding Energy - sRNA 3.13232 kcal/mol@LB@@LB@Position - mRNA 23 -- 70@LB@Position - sRNA 41 -- 90@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 159 -- 165@LB@ |
6 |
7.515e-05 |
0.04123 |
stm0665 |
gltI |
-17.87 |
0.039793 |
157 -- 199 |
35 -- 81 |
glutamate/aspartate transporter |
|
_____________156__________________200\n_____________|____________________|\n5'-CGA...UGCAG____UA______U_______GCUAU...CUG-3'\n______________GCAA__ACAACA_CACAAUA\n______________||||__||||||_|||||:|\n______________CGUU__UGUUGU_GUGUUGU\n3'-UUU...GUUAA____UG______U_______AGUGU...UCA-5'\n_____________|____________________|\n_____________82___________________34\n |
170 -- 176 |
71 -- 77 |
-19.9204 kcal/mol |
1.29616 kcal/mol |
3.80671 kcal/mol |
156 200@LB@ | |@LB@5'-CGA...UGCAG UA U GCUAU...CUG-3'@LB@ GCAA ACAACA CACAAUA@LB@ |||| |||||| |||||:|@LB@ CGUU UGUUGU GUGUUGU@LB@3'-UUU...GUUAA UG U AGUGU...UCA-5'@LB@ | |@LB@ 82 34@LB@@LB@@LB@Energy -17.87 kcal/mol@LB@Hybridization Energy -19.9204 kcal/mol@LB@Unfolding Energy - mRNA 1.29616 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 157 -- 199@LB@Position - sRNA 35 -- 81@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 71 -- 77@LB@ |
170 |
0.009347 |
0.1945 |
stm0477 |
acrR |
-17.70 |
0.042454 |
229 -- 246 |
74 -- 91 |
DNA-binding transcriptional repressor AcrR |
|
_____________228________________247\n_____________|__________________|\n5'-AAG...AGCGC__G_______________UCCUG...CGC-3'\n______________UG_AGACACGACAACACA\n______________||_|:||||:||||||||\n______________AC_UUUGUGUUGUUGUGU\n3'-UUU...GGUUA__G_______________UGUAG...UCA-5'\n_____________|__________________|\n_____________92_________________73\n |
240 -- 246 |
74 -- 80 |
-24.9092 kcal/mol |
3.16809 kcal/mol |
3.73631 kcal/mol |
228 247@LB@ | |@LB@5'-AAG...AGCGC G UCCUG...CGC-3'@LB@ UG AGACACGACAACACA@LB@ || |:||||:||||||||@LB@ AC UUUGUGUUGUUGUGU@LB@3'-UUU...GGUUA G UGUAG...UCA-5'@LB@ | |@LB@ 92 73@LB@@LB@@LB@Energy -17.70 kcal/mol@LB@Hybridization Energy -24.9092 kcal/mol@LB@Unfolding Energy - mRNA 3.16809 kcal/mol@LB@Unfolding Energy - sRNA 3.73631 kcal/mol@LB@@LB@Position - mRNA 229 -- 246@LB@Position - sRNA 74 -- 91@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 74 -- 80@LB@ |
123 |
0.006073 |
0.1758 |
stm4355 |
yjeS |
-17.69 |
0.042665 |
80 -- 140 |
31 -- 90 |
putative Fe-S protein |
|
_____________79______________________________141\n_____________|_______________________________|\n_______5'-CGUU______________C________________AGUGU...UUA-3'\n______________GUUGC___CAUGAC_ACACAACA_C_CAGCC\n______________:||||___||::||_||||||||_|_||:||\n______________UAACG___GUGUUG_UGUGUUGU_G_GUUGG\n3'-UUU...CUGGU_____UUU______U________A_U_____CAUUC...UCA-5'\n_____________|_______________________________|\n_____________91______________________________30\n |
18 -- 24 |
71 -- 77 |
-27.2663 kcal/mol |
5.13395 kcal/mol |
8.62086 kcal/mol |
79 141@LB@ | |@LB@ 5'-CGUU C AGUGU...UUA-3'@LB@ GUUGC CAUGAC ACACAACA C CAGCC@LB@ :|||| ||::|| |||||||| | ||:||@LB@ UAACG GUGUUG UGUGUUGU G GUUGG@LB@3'-UUU...CUGGU UUU U A U CAUUC...UCA-5'@LB@ | |@LB@ 91 30@LB@@LB@@LB@Energy -17.69 kcal/mol@LB@Hybridization Energy -27.2663 kcal/mol@LB@Unfolding Energy - mRNA 5.13395 kcal/mol@LB@Unfolding Energy - sRNA 8.62086 kcal/mol@LB@@LB@Position - mRNA 80 -- 140@LB@Position - sRNA 31 -- 90@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 71 -- 77@LB@ |
2 |
2.663e-05 |
0.04123 |
stm2355 |
argT |
-17.69 |
0.042680 |
144 -- 202 |
34 -- 91 |
histidine ABC transporter substrate-binding protein HisJ |
|
_____________143____________________203\n_____________|______________________|\n5'-UUA...AAGUC_________________C____AAAAC...AUA-3'\n______________UGCAAACAC_ACAACGC_ACGU\n______________|||||||||_|||||:|_||:|\n______________ACGUUUGUG_UGUUGUG_UGUA\n3'-UUU...GGUUA_________U_______U____GUGUU...UCA-5'\n_____________|______________________|\n_____________92_____________________33\n |
153 -- 159 |
75 -- 81 |
-25.653 kcal/mol |
2.98604 kcal/mol |
4.21448 kcal/mol |
143 203@LB@ | |@LB@5'-UUA...AAGUC C AAAAC...AUA-3'@LB@ UGCAAACAC ACAACGC ACGU@LB@ ||||||||| |||||:| ||:|@LB@ ACGUUUGUG UGUUGUG UGUA@LB@3'-UUU...GGUUA U U GUGUU...UCA-5'@LB@ | |@LB@ 92 33@LB@@LB@@LB@Energy -17.69 kcal/mol@LB@Hybridization Energy -25.653 kcal/mol@LB@Unfolding Energy - mRNA 2.98604 kcal/mol@LB@Unfolding Energy - sRNA 4.21448 kcal/mol@LB@@LB@Position - mRNA 144 -- 202@LB@Position - sRNA 34 -- 91@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 75 -- 81@LB@ |
26 |
0.0006768 |
0.08814 |
stm1365 |
ydiJ |
-17.55 |
0.045121 |
78 -- 116 |
57 -- 91 |
similar to E. coli putative oxidase (AAC74757.1); Blastp hit to AAC74757.1 (1018 aa) 88% identity in aa 1 - 1017 |
|
_____________77_________________________117\n_____________|__________________________|\n5'-CUA...AAUGU_________AAUA_____________AACGA...CCA-3'\n______________GAUACAACA____ACGCAACA_CGCA\n______________:|:||||||____||:|||||_|:||\n______________UUGUGUUGU____UGUGUUGU_GUGU\n3'-UUU...AACGU_____________________A____UGGCA...UCA-5'\n_____________|__________________________|\n_____________92_________________________56\n |
95 -- 101 |
71 -- 77 |
-21.9961 kcal/mol |
1.97147 kcal/mol |
5.98953 kcal/mol |
77 117@LB@ | |@LB@5'-CUA...AAUGU AAUA AACGA...CCA-3'@LB@ GAUACAACA ACGCAACA CGCA@LB@ :|:|||||| ||:||||| |:||@LB@ UUGUGUUGU UGUGUUGU GUGU@LB@3'-UUU...AACGU A UGGCA...UCA-5'@LB@ | |@LB@ 92 56@LB@@LB@@LB@Energy -17.55 kcal/mol@LB@Hybridization Energy -21.9961 kcal/mol@LB@Unfolding Energy - mRNA 1.97147 kcal/mol@LB@Unfolding Energy - sRNA 5.98953 kcal/mol@LB@@LB@Position - mRNA 78 -- 116@LB@Position - sRNA 57 -- 91@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 71 -- 77@LB@ |
132 |
0.006673 |
0.1774 |
stm2677 |
ffh |
-17.54 |
0.045291 |
232 -- 275 |
38 -- 86 |
4.5S-RNP protein |
|
_____________231_________________________________________________________________________________________________276\n_____________|___________________________________________________________________________________________________|\n5'-UAG...CAAAA_______UA__U_____CG____UU__CC__________A_A____A___A__G___UACG___C______CU____CC__U____________AA___GGCUU...AAG-3'\n______________ACGGGCA__GU__GUGU__ACAG__GA__AGUGAGAAAG_G_AG_C__GU_UA_CGU____UGA__CGCAG__CCAA__GU__GCAUAACAACA__GAC\n______________||:|:||__||__:|||__||||__||__|||||:||||_|_||_|__|:_||_|||____|||__|||||__||||__|:__:||:|||||||__:||\n______________UGUCUGU__CA__UACA__UGUC__CU__UCACUUUUUC_C_UC_G__CG_AU_GCA____ACU__GCGUC__GGUU__CG__UGUGUUGUUGU__UUG\n3'-UUU...AUACC_______CC__UU__________________________C_A__A_AG_____G___CCAG___UA_____U_____AA__UU___________G____UAGUG...UCA-5'\n_____________|___________________________________________________________________________________________________|\n_____________87__________________________________________________________________________________________________37\n |
110 -- 116 |
76 -- 82 |
-60.3799 kcal/mol |
23.7315 kcal/mol |
24.6218 kcal/mol |
231 276@LB@ | |@LB@5'-UAG...CAAAA UA U CG UU CC A A A A G UACG C CU CC U AA GGCUU...AAG-3'@LB@ ACGGGCA GU GUGU ACAG GA AGUGAGAAAG G AG C GU UA CGU UGA CGCAG CCAA GU GCAUAACAACA GAC@LB@ ||:|:|| || :||| |||| || |||||:|||| | || | |: || ||| ||| ||||| |||| |: :||:||||||| :||@LB@ UGUCUGU CA UACA UGUC CU UCACUUUUUC C UC G CG AU GCA ACU GCGUC GGUU CG UGUGUUGUUGU UUG@LB@3'-UUU...AUACC CC UU C A A AG G CCAG UA U AA UU G UAGUG...UCA-5'@LB@ | |@LB@ 87 37@LB@@LB@@LB@Energy -17.54 kcal/mol@LB@Hybridization Energy -60.3799 kcal/mol@LB@Unfolding Energy - mRNA 23.7315 kcal/mol@LB@Unfolding Energy - sRNA 24.6218 kcal/mol@LB@@LB@Position - mRNA 232 -- 275@LB@Position - sRNA 38 -- 86@LB@Position Seed - mRNA 110 -- 116@LB@Position Seed - sRNA 76 -- 82@LB@ |