48 |
0.002388 |
0.1727 |
b2198 |
ccmD |
-12.59 |
0.043972 |
250 -- 282 |
36 -- 77 |
cytochrome c biogenesis protein; heme export ABC transporter holo-CcmE release factor |
|
_____________249________________________________________283\n_____________|__________________________________________|\n5'-UGG...CGGUU_____UUUUUU_____________G_________________CCGUU...UGG-3'\n______________ACGCC______GUC_UGGCUG_GC_GUG_______GUGAUGA\n______________||:||______:||_||||||_||_||:_______:||||||\n______________UGUGG______UAG_ACCGAC_CG_CAU_______UACUACU\n3'-UUU...GCGGU_____UCCCUU___A______G__G___UUAAUAA_______CAAUG...GUG-5'\n_____________|__________________________________________|\n_____________78_________________________________________35\n |
276 -- 282 |
36 -- 42 |
-31.2682 kcal/mol |
9.31707 kcal/mol |
9.36195 kcal/mol |
249 283@LB@ | |@LB@5'-UGG...CGGUU UUUUUU G CCGUU...UGG-3'@LB@ ACGCC GUC UGGCUG GC GUG GUGAUGA@LB@ ||:|| :|| |||||| || ||: :||||||@LB@ UGUGG UAG ACCGAC CG CAU UACUACU@LB@3'-UUU...GCGGU UCCCUU A G G UUAAUAA CAAUG...GUG-5'@LB@ | |@LB@ 78 35@LB@@LB@@LB@Energy -12.59 kcal/mol@LB@Hybridization Energy -31.2682 kcal/mol@LB@Unfolding Energy - mRNA 9.31707 kcal/mol@LB@Unfolding Energy - sRNA 9.36195 kcal/mol@LB@@LB@Position - mRNA 250 -- 282@LB@Position - sRNA 36 -- 77@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 36 -- 42@LB@ |
16 |
0.0007867 |
0.1666 |
b2178 |
yejB |
-12.57 |
0.044336 |
179 -- 196 |
66 -- 82 |
microcin C ABC transporter permease |
|
_____________178________________197\n_____________|__________________|\n5'-UGG...CCGUC________AA________GUAGA...GUC-3'\n______________CGCCAGCA__CAGGGAGA\n______________|||||:||__||||||:|\n______________GCGGUUGU__GUCCCUUU\n3'-UUU...AUGAC________G_________AGAAC...GUG-5'\n_____________|__________________|\n_____________83_________________65\n |
190 -- 196 |
66 -- 72 |
-25.5869 kcal/mol |
5.97553 kcal/mol |
7.04029 kcal/mol |
178 197@LB@ | |@LB@5'-UGG...CCGUC AA GUAGA...GUC-3'@LB@ CGCCAGCA CAGGGAGA@LB@ |||||:|| ||||||:|@LB@ GCGGUUGU GUCCCUUU@LB@3'-UUU...AUGAC G AGAAC...GUG-5'@LB@ | |@LB@ 83 65@LB@@LB@@LB@Energy -12.57 kcal/mol@LB@Hybridization Energy -25.5869 kcal/mol@LB@Unfolding Energy - mRNA 5.97553 kcal/mol@LB@Unfolding Energy - sRNA 7.04029 kcal/mol@LB@@LB@Position - mRNA 179 -- 196@LB@Position - sRNA 66 -- 82@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 66 -- 72@LB@ |
23 |
0.001421 |
0.1727 |
b1234 |
rssA |
-12.55 |
0.044848 |
179 -- 192 |
61 -- 74 |
putative patatin-like family phospholipase |
|
_____________178____________193\n_____________|______________|\n5'-GAU...GCAUU______________CGGGA...AAA-3'\n______________CCAGGGGAAUCUUG\n______________||||||:|||||||\n______________GGUCCCUUUAGAAC\n3'-UUU...GUUGU______________CGACG...GUG-5'\n_____________|______________|\n_____________75_____________60\n |
186 -- 192 |
61 -- 67 |
-22.3239 kcal/mol |
6.14875 kcal/mol |
3.62869 kcal/mol |
178 193@LB@ | |@LB@5'-GAU...GCAUU CGGGA...AAA-3'@LB@ CCAGGGGAAUCUUG@LB@ ||||||:|||||||@LB@ GGUCCCUUUAGAAC@LB@3'-UUU...GUUGU CGACG...GUG-5'@LB@ | |@LB@ 75 60@LB@@LB@@LB@Energy -12.55 kcal/mol@LB@Hybridization Energy -22.3239 kcal/mol@LB@Unfolding Energy - mRNA 6.14875 kcal/mol@LB@Unfolding Energy - sRNA 3.62869 kcal/mol@LB@@LB@Position - mRNA 179 -- 192@LB@Position - sRNA 61 -- 74@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 61 -- 67@LB@ |
19 |
0.001118 |
0.1727 |
b2455 |
eutE |
-12.39 |
0.048028 |
37 -- 59 |
68 -- 89 |
aldehyde oxidoreductase ethanolamine utilization protein |
|
_____________36______________________60\n_____________|_______________________|\n5'-GGU...UCGAC_______G___G__A________GUGGG...UCG-3'\n______________AAUAUUG_CGC_GG_ACCGGGGA\n______________||||:||_|||_::_|||:||||\n______________UUAUGAC_GCG_UU_UGGUCCCU\n3'-UUU...CGCGC___________G__G________UUAGA...GUG-5'\n_____________|_______________________|\n_____________90______________________67\n |
37 -- 43 |
83 -- 89 |
-25.7412 kcal/mol |
5.46666 kcal/mol |
7.88032 kcal/mol |
36 60@LB@ | |@LB@5'-GGU...UCGAC G G A GUGGG...UCG-3'@LB@ AAUAUUG CGC GG ACCGGGGA@LB@ ||||:|| ||| :: |||:||||@LB@ UUAUGAC GCG UU UGGUCCCU@LB@3'-UUU...CGCGC G G UUAGA...GUG-5'@LB@ | |@LB@ 90 67@LB@@LB@@LB@Energy -12.39 kcal/mol@LB@Hybridization Energy -25.7412 kcal/mol@LB@Unfolding Energy - mRNA 5.46666 kcal/mol@LB@Unfolding Energy - sRNA 7.88032 kcal/mol@LB@@LB@Position - mRNA 37 -- 59@LB@Position - sRNA 68 -- 89@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 83 -- 89@LB@ |
116 |
0.006112 |
0.1855 |
b1260 |
trpA |
-12.39 |
0.048115 |
172 -- 199 |
63 -- 89 |
tryptophan synthase alpha subunit |
|
_____________171__________________________200\n_____________|____________________________|\n5'-GCC...UUCAC______U__AA_____GA__________GAUGG...CAU-3'\n______________GAUAUU_UG__AGCAC__GGGGAAAUCU\n______________:|||:|_:|__|:|||__:|||||||||\n______________UUAUGA_GC__UUGUG__UCCCUUUAGA\n3'-UUU...CGCGC______C__GG_____G___________ACCGA...GUG-5'\n_____________|____________________________|\n_____________90___________________________62\n |
193 -- 199 |
63 -- 69 |
-25.3377 kcal/mol |
5.06327 kcal/mol |
7.88429 kcal/mol |
171 200@LB@ | |@LB@5'-GCC...UUCAC U AA GA GAUGG...CAU-3'@LB@ GAUAUU UG AGCAC GGGGAAAUCU@LB@ :|||:| :| |:||| :|||||||||@LB@ UUAUGA GC UUGUG UCCCUUUAGA@LB@3'-UUU...CGCGC C GG G ACCGA...GUG-5'@LB@ | |@LB@ 90 62@LB@@LB@@LB@Energy -12.39 kcal/mol@LB@Hybridization Energy -25.3377 kcal/mol@LB@Unfolding Energy - mRNA 5.06327 kcal/mol@LB@Unfolding Energy - sRNA 7.88429 kcal/mol@LB@@LB@Position - mRNA 172 -- 199@LB@Position - sRNA 63 -- 89@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 63 -- 69@LB@ |
169 |
0.01004 |
0.2071 |
b2384 |
ypdE |
-12.38 |
0.048278 |
93 -- 137 |
31 -- 75 |
aminopeptidase |
b4305 b3898 |
_____________92______________________________________________138\n_____________|_______________________________________________|\n5'-AUU...UAUUU_______C__GGG____G_____AUCG___A_______C________CCCGC...UGC-3'\n______________GCCAGGG_AA____GGC_UGCGC____AAG_UGUUGUG_UG_GUUAC\n______________:||||||_||____|||_|||||____||:_|:||:||_||_|||||\n______________UGGUCCC_UU____CCG_ACGCG____UUU_AUAAUAC_AC_CAAUG\n3'-UUU...GGUUG_______U__AGAA_________GCA____A_______U__U_____UUCCC...GUG-5'\n_____________|_______________________________________________|\n_____________76______________________________________________30\n |
93 -- 99 |
69 -- 75 |
-40.1479 kcal/mol |
18.4667 kcal/mol |
9.29858 kcal/mol |
92 138@LB@ | |@LB@5'-AUU...UAUUU C GGG G AUCG A C CCCGC...UGC-3'@LB@ GCCAGGG AA GGC UGCGC AAG UGUUGUG UG GUUAC@LB@ :|||||| || ||| ||||| ||: |:||:|| || |||||@LB@ UGGUCCC UU CCG ACGCG UUU AUAAUAC AC CAAUG@LB@3'-UUU...GGUUG U AGAA GCA A U U UUCCC...GUG-5'@LB@ | |@LB@ 76 30@LB@@LB@@LB@Energy -12.38 kcal/mol@LB@Hybridization Energy -40.1479 kcal/mol@LB@Unfolding Energy - mRNA 18.4667 kcal/mol@LB@Unfolding Energy - sRNA 9.29858 kcal/mol@LB@@LB@Position - mRNA 93 -- 137@LB@Position - sRNA 31 -- 75@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 69 -- 75@LB@ |
35 |
0.001921 |
0.1727 |
b1849 |
purT |
-12.35 |
0.048961 |
166 -- 192 |
67 -- 88 |
phosphoribosylglycinamide formyltransferase 2 |
|
_____________165_________________________193\n_____________|___________________________|\n5'-UUU...CGUUU_________G__GAAUUA_________UAUUC...GUC-3'\n______________AUACUGCGC_CG______AUCAGGGGA\n______________|||||||||_|:______|:|||||:|\n______________UAUGACGCG_GU______UGGUCCCUU\n3'-UUU...GCGCU____________UG_____________UAGAA...GUG-5'\n_____________|___________________________|\n_____________89__________________________66\n |
186 -- 192 |
67 -- 73 |
-25.9621 kcal/mol |
6.22738 kcal/mol |
7.38319 kcal/mol |
165 193@LB@ | |@LB@5'-UUU...CGUUU G GAAUUA UAUUC...GUC-3'@LB@ AUACUGCGC CG AUCAGGGGA@LB@ ||||||||| |: |:|||||:|@LB@ UAUGACGCG GU UGGUCCCUU@LB@3'-UUU...GCGCU UG UAGAA...GUG-5'@LB@ | |@LB@ 89 66@LB@@LB@@LB@Energy -12.35 kcal/mol@LB@Hybridization Energy -25.9621 kcal/mol@LB@Unfolding Energy - mRNA 6.22738 kcal/mol@LB@Unfolding Energy - sRNA 7.38319 kcal/mol@LB@@LB@Position - mRNA 166 -- 192@LB@Position - sRNA 67 -- 88@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 67 -- 73@LB@ |
109 |
0.005919 |
0.1855 |
b3807 |
cyaY |
-12.33 |
0.049473 |
23 -- 64 |
29 -- 73 |
iron-dependent inhibitor of iron-sulfur cluster formation; frataxin; iron-binding and oxidizing protein |
|
_____________22__________________________________________________65\n_____________|___________________________________________________|\n5'-UGA...AGAAA________GACG___UGUAA_______C_____________A_________AUCUU...AAA-3'\n______________CAGGGAAA____UGG_____CUGCGCC_UA_______AUGA_GAG__ACAA\n______________||||||||____|||_____|||||||_||_______||||_|||__||||\n______________GUCCCUUU____ACC_____GACGCGG_AU_______UACU_CUC__UGUU\n3'-UUU...UUGUG________AGA________________C__UUAAUAA____A___AA____CCCGU...GUG-5'\n_____________|___________________________________________________|\n_____________74__________________________________________________28\n |
43 -- 49 |
53 -- 59 |
-33.7794 kcal/mol |
12.1445 kcal/mol |
9.30637 kcal/mol |
22 65@LB@ | |@LB@5'-UGA...AGAAA GACG UGUAA C A AUCUU...AAA-3'@LB@ CAGGGAAA UGG CUGCGCC UA AUGA GAG ACAA@LB@ |||||||| ||| ||||||| || |||| ||| ||||@LB@ GUCCCUUU ACC GACGCGG AU UACU CUC UGUU@LB@3'-UUU...UUGUG AGA C UUAAUAA A AA CCCGU...GUG-5'@LB@ | |@LB@ 74 28@LB@@LB@@LB@Energy -12.33 kcal/mol@LB@Hybridization Energy -33.7794 kcal/mol@LB@Unfolding Energy - mRNA 12.1445 kcal/mol@LB@Unfolding Energy - sRNA 9.30637 kcal/mol@LB@@LB@Position - mRNA 23 -- 64@LB@Position - sRNA 29 -- 73@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 53 -- 59@LB@ |
63 |
0.003148 |
0.1727 |
b0131 |
panD |
-12.33 |
0.049519 |
276 -- 291 |
70 -- 84 |
aspartate 1-decarboxylase |
|
_____________275______________292\n_____________|________________|\n5'-AUU...GUUCU_______UUG______AUUUU...UUG-3'\n______________UGCGCCA___ACCAGG\n______________|||||||___||||||\n______________ACGCGGU___UGGUCC\n3'-UUU...UUAUG_______UG_______CUUUA...GUG-5'\n_____________|________________|\n_____________85_______________69\n |
276 -- 282 |
78 -- 84 |
-24.0598 kcal/mol |
4.4848 kcal/mol |
7.24859 kcal/mol |
275 292@LB@ | |@LB@5'-AUU...GUUCU UUG AUUUU...UUG-3'@LB@ UGCGCCA ACCAGG@LB@ ||||||| ||||||@LB@ ACGCGGU UGGUCC@LB@3'-UUU...UUAUG UG CUUUA...GUG-5'@LB@ | |@LB@ 85 69@LB@@LB@@LB@Energy -12.33 kcal/mol@LB@Hybridization Energy -24.0598 kcal/mol@LB@Unfolding Energy - mRNA 4.4848 kcal/mol@LB@Unfolding Energy - sRNA 7.24859 kcal/mol@LB@@LB@Position - mRNA 276 -- 291@LB@Position - sRNA 70 -- 84@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 78 -- 84@LB@ |
74 |
0.003792 |
0.1804 |
b2520 |
yfhM |
-12.28 |
0.050623 |
263 -- 298 |
53 -- 91 |
bacterial alpha2-macroglobulin colonization factor ECAM; anti-host protease defense factor; periplasmic inner membrane-anchored lipoprotein |
|
_____________262_____________________________________299\n_____________|_______________________________________|\n5'-CUC...AACAA___UA____________G___U____AAAGA________UU-3'\n______________CGA__AC_GCGCCAACA_CGG_GAAA_______UGCGCC\n______________|||__||_|||||||||_|:|_||||_______||||||\n______________GCU__UG_CGCGGUUGU_GUC_CUUU_______ACGCGG\n3'-UUU...CACGC___UA__A_________G___C____AGAACCG______CAUUU...GUG-5'\n_____________|_______________________________________|\n_____________92______________________________________52\n |
272 -- 278 |
75 -- 81 |
-39.9109 kcal/mol |
10.9563 kcal/mol |
16.677 kcal/mol |
262 299@LB@ | |@LB@5'-CUC...AACAA UA G U AAAGA UU-3'@LB@ CGA AC GCGCCAACA CGG GAAA UGCGCC@LB@ ||| || ||||||||| |:| |||| ||||||@LB@ GCU UG CGCGGUUGU GUC CUUU ACGCGG@LB@3'-UUU...CACGC UA A G C AGAACCG CAUUU...GUG-5'@LB@ | |@LB@ 92 52@LB@@LB@@LB@Energy -12.28 kcal/mol@LB@Hybridization Energy -39.9109 kcal/mol@LB@Unfolding Energy - mRNA 10.9563 kcal/mol@LB@Unfolding Energy - sRNA 16.677 kcal/mol@LB@@LB@Position - mRNA 263 -- 298@LB@Position - sRNA 53 -- 91@LB@Position Seed - mRNA 272 -- 278@LB@Position Seed - sRNA 75 -- 81@LB@ |