43 |
0.003009 |
0.2325 |
b3429 |
glgA |
-8.59 |
0.206361 |
152 -- 163 |
7 -- 22 |
glycogen synthase |
|
_____________151______________164\n_____________|________________|\n5'-GUA...CGUGC________________AAAUG...ACG-3'\n______________UGGUAAC____GCGCG\n______________||:||||____|||||\n______________ACUAUUG____CGCGC\n3'-UUU...CUACU_______UUUA_____AGAAAG-5'\n_____________|________________|\n_____________23_______________6\n |
152 -- 158 |
16 -- 22 |
-13.429 kcal/mol |
3.59934 kcal/mol |
1.24379 kcal/mol |
151 164@LB@ | |@LB@5'-GUA...CGUGC AAAUG...ACG-3'@LB@ UGGUAAC GCGCG@LB@ ||:|||| |||||@LB@ ACUAUUG CGCGC@LB@3'-UUU...CUACU UUUA AGAAAG-5'@LB@ | |@LB@ 23 6@LB@@LB@@LB@Energy -8.59 kcal/mol@LB@Hybridization Energy -13.429 kcal/mol@LB@Unfolding Energy - mRNA 3.59934 kcal/mol@LB@Unfolding Energy - sRNA 1.24379 kcal/mol@LB@@LB@Position - mRNA 152 -- 163@LB@Position - sRNA 7 -- 22@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 16 -- 22@LB@ |
44 |
0.003062 |
0.2325 |
b3847 |
pepQ |
-9.98 |
0.122201 |
144 -- 157 |
8 -- 21 |
proline dipeptidase |
|
_____________143____________158\n_____________|______________|\n5'-UUG...CUCUG_____AC_______UAAGA...UUC-3'\n______________GAUGA__GAUGUGC\n______________|||:|__:|||:||\n______________CUAUU__UUACGCG\n3'-UUU...UACUA_____GU_______CAGAAAG-5'\n_____________|______________|\n_____________22_____________7\n |
151 -- 157 |
8 -- 14 |
-13.3112 kcal/mol |
2.09686 kcal/mol |
1.23638 kcal/mol |
143 158@LB@ | |@LB@5'-UUG...CUCUG AC UAAGA...UUC-3'@LB@ GAUGA GAUGUGC@LB@ |||:| :|||:||@LB@ CUAUU UUACGCG@LB@3'-UUU...UACUA GU CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -9.98 kcal/mol@LB@Hybridization Energy -13.3112 kcal/mol@LB@Unfolding Energy - mRNA 2.09686 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 144 -- 157@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 8 -- 14@LB@ |
45 |
0.00309 |
0.2325 |
b0584 |
fepA |
-13.78 |
0.026215 |
91 -- 106 |
1 -- 17 |
ferrienterobactin outer membrane transporter |
|
_____________90________________107\n_____________|_________________|\n5'-GAA...CAACU___C_____________AGGAU...ACG-3'\n______________GCA__UGCGUGUCUUUC\n______________:||__||||:|||||||\n______________UGU__ACGCGCAGAAAG\n3'-UUU...ACUAU___UU____________-5'\n_____________|________________|\n_____________18_______________1\n |
100 -- 106 |
1 -- 7 |
-21.1338 kcal/mol |
6.10916 kcal/mol |
1.23994 kcal/mol |
90 107@LB@ | |@LB@5'-GAA...CAACU C AGGAU...ACG-3'@LB@ GCA UGCGUGUCUUUC@LB@ :|| ||||:|||||||@LB@ UGU ACGCGCAGAAAG@LB@3'-UUU...ACUAU UU -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -13.78 kcal/mol@LB@Hybridization Energy -21.1338 kcal/mol@LB@Unfolding Energy - mRNA 6.10916 kcal/mol@LB@Unfolding Energy - sRNA 1.23994 kcal/mol@LB@@LB@Position - mRNA 91 -- 106@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 1 -- 7@LB@ |
46 |
0.003408 |
0.2484 |
b2518 |
ndk |
-12.77 |
0.039848 |
1 -- 16 |
7 -- 21 |
multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase |
|
______________1_______________17\n______________|_______________|\n___________5'-___________A____GGGCA...AAA-3'\n______________GGUGAUGGAUG_CGUG\n______________|:|:|:::|||_||:|\n______________CUAUUGUUUAC_GCGC\n3'-UUU...UACUA________________AGAAAG-5'\n_____________|________________|\n_____________22_______________6\n |
5 -- 11 |
11 -- 17 |
-16.3595 kcal/mol |
2.34366 kcal/mol |
1.24179 kcal/mol |
1 17@LB@ | |@LB@ 5'- A GGGCA...AAA-3'@LB@ GGUGAUGGAUG CGUG@LB@ |:|:|:::||| ||:|@LB@ CUAUUGUUUAC GCGC@LB@3'-UUU...UACUA AGAAAG-5'@LB@ | |@LB@ 22 6@LB@@LB@@LB@Energy -12.77 kcal/mol@LB@Hybridization Energy -16.3595 kcal/mol@LB@Unfolding Energy - mRNA 2.34366 kcal/mol@LB@Unfolding Energy - sRNA 1.24179 kcal/mol@LB@@LB@Position - mRNA 1 -- 16@LB@Position - sRNA 7 -- 21@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 11 -- 17@LB@ |
47 |
0.003448 |
0.2484 |
b0614 |
citX |
-10.13 |
0.115098 |
76 -- 91 |
4 -- 17 |
apo-citrate lyase phosphoribosyl-dephospho-CoA transferase |
|
_____________75_______________92\n_____________|________________|\n5'-UUA...GCUGC____AC__________GCUGA...UCA-3'\n______________GCGA__GUGCGCGUCU\n______________:|:|__:|||||||||\n______________UGUU__UACGCGCAGA\n3'-UUU...ACUAU________________AAG-5'\n_____________|________________|\n_____________18_______________3\n |
85 -- 91 |
4 -- 10 |
-19.1919 kcal/mol |
7.83057 kcal/mol |
1.22888 kcal/mol |
75 92@LB@ | |@LB@5'-UUA...GCUGC AC GCUGA...UCA-3'@LB@ GCGA GUGCGCGUCU@LB@ :|:| :|||||||||@LB@ UGUU UACGCGCAGA@LB@3'-UUU...ACUAU AAG-5'@LB@ | |@LB@ 18 3@LB@@LB@@LB@Energy -10.13 kcal/mol@LB@Hybridization Energy -19.1919 kcal/mol@LB@Unfolding Energy - mRNA 7.83057 kcal/mol@LB@Unfolding Energy - sRNA 1.22888 kcal/mol@LB@@LB@Position - mRNA 76 -- 91@LB@Position - sRNA 4 -- 17@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 4 -- 10@LB@ |
48 |
0.00405 |
0.2857 |
b0409 |
secF |
-13.37 |
0.031213 |
166 -- 172 |
5 -- 11 |
SecYEG protein translocase auxillary subunit |
|
_____________165_____173\n_____________|_______|\n5'-CUU...GGCAA_______AAGAA...UGU-3'\n______________GCGCGUC\n______________|||||||\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
166 -- 172 |
5 -- 11 |
-14.9857 kcal/mol |
0.509172 kcal/mol |
1.11145 kcal/mol |
165 173@LB@ | |@LB@5'-CUU...GGCAA AAGAA...UGU-3'@LB@ GCGCGUC@LB@ |||||||@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -13.37 kcal/mol@LB@Hybridization Energy -14.9857 kcal/mol@LB@Unfolding Energy - mRNA 0.509172 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 166 -- 172@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 5 -- 11@LB@ |
49 |
0.004401 |
0.299 |
b0093 |
ftsQ |
-10.19 |
0.112476 |
259 -- 274 |
4 -- 20 |
divisome assembly protein membrane anchored protein involved in growth of wall at septum |
|
_____________258_______________275\n_____________|_________________|\n5'-GCU...CCGCA________A________GGCGG...CCG-3'\n______________AUAAUGGA__CGCGUCU\n______________||||:::|__|||||||\n______________UAUUGUUU__GCGCAGA\n3'-UUU...ACUAC________AC_______AAG-5'\n_____________|_________________|\n_____________21________________3\n |
268 -- 274 |
4 -- 10 |
-13.8485 kcal/mol |
2.40331 kcal/mol |
1.25368 kcal/mol |
258 275@LB@ | |@LB@5'-GCU...CCGCA A GGCGG...CCG-3'@LB@ AUAAUGGA CGCGUCU@LB@ ||||:::| |||||||@LB@ UAUUGUUU GCGCAGA@LB@3'-UUU...ACUAC AC AAG-5'@LB@ | |@LB@ 21 3@LB@@LB@@LB@Energy -10.19 kcal/mol@LB@Hybridization Energy -13.8485 kcal/mol@LB@Unfolding Energy - mRNA 2.40331 kcal/mol@LB@Unfolding Energy - sRNA 1.25368 kcal/mol@LB@@LB@Position - mRNA 259 -- 274@LB@Position - sRNA 4 -- 20@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 4 -- 10@LB@ |
50 |
0.004415 |
0.299 |
b0752 |
zitB |
-14.03 |
0.023662 |
243 -- 258 |
5 -- 21 |
zinc efflux system |
|
_____________242_______________259\n_____________|_________________|\n5'-CGC...CAGAA____________U____GCUUG...UGG-3'\n______________GAUAAUAA_UGC_CGUC\n______________|||||:||_|||_||||\n______________CUAUUGUU_ACG_GCAG\n3'-UUU...UACUA________U___C____AAAG-5'\n_____________|_________________|\n_____________22________________4\n |
244 -- 250 |
14 -- 20 |
-17.36 kcal/mol |
2.08049 kcal/mol |
1.24955 kcal/mol |
242 259@LB@ | |@LB@5'-CGC...CAGAA U GCUUG...UGG-3'@LB@ GAUAAUAA UGC CGUC@LB@ |||||:|| ||| ||||@LB@ CUAUUGUU ACG GCAG@LB@3'-UUU...UACUA U C AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -14.03 kcal/mol@LB@Hybridization Energy -17.36 kcal/mol@LB@Unfolding Energy - mRNA 2.08049 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 243 -- 258@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 14 -- 20@LB@ |
51 |
0.004574 |
0.3024 |
b3529 |
yhjK |
-9.99 |
0.121635 |
195 -- 213 |
1 -- 18 |
cyclic-di-GMP phosphodiesterase |
|
_____________194_________________214\n_____________|___________________|\n5'-AGC...GGGGA_____UU_______AAG__GCUCG...AUC-3'\n______________GACAA__UGCGCGU___UC\n______________:||||__|||||||___||\n______________UUGUU__ACGCGCA___AG\n3'-UUU...UACUA_____U________GAA__-5'\n_____________|__________________|\n_____________19_________________1\n |
202 -- 208 |
6 -- 12 |
-16.8324 kcal/mol |
5.6017 kcal/mol |
1.24077 kcal/mol |
194 214@LB@ | |@LB@5'-AGC...GGGGA UU AAG GCUCG...AUC-3'@LB@ GACAA UGCGCGU UC@LB@ :|||| ||||||| ||@LB@ UUGUU ACGCGCA AG@LB@3'-UUU...UACUA U GAA -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -9.99 kcal/mol@LB@Hybridization Energy -16.8324 kcal/mol@LB@Unfolding Energy - mRNA 5.6017 kcal/mol@LB@Unfolding Energy - sRNA 1.24077 kcal/mol@LB@@LB@Position - mRNA 195 -- 213@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 6 -- 12@LB@ |
52 |
0.004683 |
0.3024 |
b1130 |
phoP |
-12.79 |
0.039529 |
186 -- 208 |
6 -- 31 |
response regulator in two-component regulatory system with PhoQ |
|
_____________185________________________209\n_____________|__________________________|\n5'-GAG...UAAGA_________A________________ACUGG...CCA-3'\n______________CAGGGA_GA__AUAA_AAAUGCGCGU\n______________||||||_||__||||_||||||||||\n______________GUCCCU_CU__UAUU_UUUACGCGCA\n3'-UUU...CUUAA______A__AC____G__________GAAAG-5'\n_____________|__________________________|\n_____________32_________________________5\n |
202 -- 208 |
6 -- 12 |
-26.853 kcal/mol |
6.30535 kcal/mol |
7.75407 kcal/mol |
185 209@LB@ | |@LB@5'-GAG...UAAGA A ACUGG...CCA-3'@LB@ CAGGGA GA AUAA AAAUGCGCGU@LB@ |||||| || |||| ||||||||||@LB@ GUCCCU CU UAUU UUUACGCGCA@LB@3'-UUU...CUUAA A AC G GAAAG-5'@LB@ | |@LB@ 32 5@LB@@LB@@LB@Energy -12.79 kcal/mol@LB@Hybridization Energy -26.853 kcal/mol@LB@Unfolding Energy - mRNA 6.30535 kcal/mol@LB@Unfolding Energy - sRNA 7.75407 kcal/mol@LB@@LB@Position - mRNA 186 -- 208@LB@Position - sRNA 6 -- 31@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 6 -- 12@LB@ |