| 19 |
0.0004167 |
0.0781 |
stm0475 |
acrB |
-19.12 |
0.024591 |
69 -- 114 |
139 -- 185 |
aminoglycoside/multidrug transporter permease |
|
_____________68_______________________115\n_____________|________________________|\n5'-AAG...GUCCU____C_____U_____________AAUUA...CGC-3'\n______________GGCG_ACAGG_UAAA_GUACAGGA\n______________|:|:_|||||_||||_||||||||\n______________CUGU_UGUCC_AUUU_CAUGUCCU\n3'-UUU...GAUAC____C_____C____A________UCACU...UCA-5'\n_____________|________________________|\n_____________186______________________138\n |
108 -- 114 |
139 -- 145 |
-25.274 kcal/mol |
6.90525 kcal/mol |
3.69132 kcal/mol |
68 115@LB@ | |@LB@5'-AAG...GUCCU C U AAUUA...CGC-3'@LB@ GGCG ACAGG UAAA GUACAGGA@LB@ |:|: ||||| |||| ||||||||@LB@ CUGU UGUCC AUUU CAUGUCCU@LB@3'-UUU...GAUAC C C A UCACU...UCA-5'@LB@ | |@LB@ 186 138@LB@@LB@@LB@Energy -19.12 kcal/mol@LB@Hybridization Energy -25.274 kcal/mol@LB@Unfolding Energy - mRNA 6.90525 kcal/mol@LB@Unfolding Energy - sRNA 3.69132 kcal/mol@LB@@LB@Position - mRNA 69 -- 114@LB@Position - sRNA 139 -- 185@LB@Position Seed - mRNA 108 -- 114@LB@Position Seed - sRNA 139 -- 145@LB@ |
| 50 |
0.001812 |
0.1291 |
stm3207 |
ygiH |
-15.41 |
0.101358 |
70 -- 101 |
63 -- 93 |
acyl-phosphate--glycerol-3-phosphate O-acyltransferase |
|
_____________69___________________________________102\n_____________|____________________________________|\n5'-UAU...CGAAA_____UCUAU__________U_______________UGCCU...CGC-3'\n______________GUUGC_____AAAUACAAUA_C____CAUCACGACC\n______________:||||_____|||:||||:|_|____||||||:|||\n______________UAACG_____UUUGUGUUGU_G____GUAGUGUUGG\n3'-UUU...CUGGU____________________U_UGUU__________CAUUC...UCA-5'\n_____________|____________________________________|\n_____________94___________________________________62\n |
95 -- 101 |
63 -- 69 |
-25.69 kcal/mol |
1.94006 kcal/mol |
8.62086 kcal/mol |
69 102@LB@ | |@LB@5'-UAU...CGAAA UCUAU U UGCCU...CGC-3'@LB@ GUUGC AAAUACAAUA C CAUCACGACC@LB@ :|||| |||:||||:| | ||||||:|||@LB@ UAACG UUUGUGUUGU G GUAGUGUUGG@LB@3'-UUU...CUGGU U UGUU CAUUC...UCA-5'@LB@ | |@LB@ 94 62@LB@@LB@@LB@Energy -15.41 kcal/mol@LB@Hybridization Energy -25.69 kcal/mol@LB@Unfolding Energy - mRNA 1.94006 kcal/mol@LB@Unfolding Energy - sRNA 8.62086 kcal/mol@LB@@LB@Position - mRNA 70 -- 101@LB@Position - sRNA 63 -- 93@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 185 |
0.01043 |
0.1967 |
stm1700 |
fabI |
-13.03 |
0.238331 |
75 -- 107 |
38 -- 76 |
enoyl-[acyl-carrier-protein] reductase |
|
_____________74______________________________108\n_____________|_______________________________|\n5'-AGU...AGCGU____C______C___________________UAUAA...CUG-3'\n______________GACA_ACGGGG________CA_GGAGUGGGA\n______________||||_||:|||________||_|:||||::|\n______________CUGU_UGUCCC________GU_CUUCACUUU\n3'-UUU...GAUAC____C______AUUUACAU__C_________UUCCC...UCA-5'\n_____________|_______________________________|\n_____________77______________________________37\n |
96 -- 102 |
134 -- 140 |
-20.8604 kcal/mol |
6.05685 kcal/mol |
6.0649 kcal/mol |
74 108@LB@ | |@LB@5'-AGU...AGCGU C C UAUAA...CUG-3'@LB@ GACA ACGGGG CA GGAGUGGGA@LB@ |||| ||:||| || |:||||::|@LB@ CUGU UGUCCC GU CUUCACUUU@LB@3'-UUU...GAUAC C AUUUACAU C UUCCC...UCA-5'@LB@ | |@LB@ 77 37@LB@@LB@@LB@Energy -13.03 kcal/mol@LB@Hybridization Energy -20.8604 kcal/mol@LB@Unfolding Energy - mRNA 6.05685 kcal/mol@LB@Unfolding Energy - sRNA 6.0649 kcal/mol@LB@@LB@Position - mRNA 75 -- 107@LB@Position - sRNA 38 -- 76@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 134 -- 140@LB@ |
| 173 |
0.009489 |
0.1945 |
stm3985 |
yigZ |
-14.68 |
0.132642 |
77 -- 135 |
33 -- 90 |
YigZ family protein |
|
_____________76___________________136\n_____________|____________________|\n5'-CGA...GUUCA________UU__________GAAAA...ACG-3'\n______________GCAAGCAC__CAAC_UGGCA\n______________||||:|||__||||_:::||\n______________CGUUUGUG__GUUG_GUUGU\n3'-UUU...GUUAA________UU____U_____AGUGU...UCA-5'\n_____________|____________________|\n_____________91___________________32\n |
78 -- 84 |
83 -- 89 |
-19.4869 kcal/mol |
6.86655 kcal/mol |
3.80671 kcal/mol |
76 136@LB@ | |@LB@5'-CGA...GUUCA UU GAAAA...ACG-3'@LB@ GCAAGCAC CAAC UGGCA@LB@ ||||:||| |||| :::||@LB@ CGUUUGUG GUUG GUUGU@LB@3'-UUU...GUUAA UU U AGUGU...UCA-5'@LB@ | |@LB@ 91 32@LB@@LB@@LB@Energy -14.68 kcal/mol@LB@Hybridization Energy -19.4869 kcal/mol@LB@Unfolding Energy - mRNA 6.86655 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 77 -- 135@LB@Position - sRNA 33 -- 90@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 83 -- 89@LB@ |
| 26 |
0.0006768 |
0.08814 |
stm1365 |
ydiJ |
-17.55 |
0.045121 |
78 -- 116 |
57 -- 91 |
similar to E. coli putative oxidase (AAC74757.1); Blastp hit to AAC74757.1 (1018 aa) 88% identity in aa 1 - 1017 |
|
_____________77_________________________117\n_____________|__________________________|\n5'-CUA...AAUGU_________AAUA_____________AACGA...CCA-3'\n______________GAUACAACA____ACGCAACA_CGCA\n______________:|:||||||____||:|||||_|:||\n______________UUGUGUUGU____UGUGUUGU_GUGU\n3'-UUU...AACGU_____________________A____UGGCA...UCA-5'\n_____________|__________________________|\n_____________92_________________________56\n |
95 -- 101 |
71 -- 77 |
-21.9961 kcal/mol |
1.97147 kcal/mol |
5.98953 kcal/mol |
77 117@LB@ | |@LB@5'-CUA...AAUGU AAUA AACGA...CCA-3'@LB@ GAUACAACA ACGCAACA CGCA@LB@ :|:|||||| ||:||||| |:||@LB@ UUGUGUUGU UGUGUUGU GUGU@LB@3'-UUU...AACGU A UGGCA...UCA-5'@LB@ | |@LB@ 92 56@LB@@LB@@LB@Energy -17.55 kcal/mol@LB@Hybridization Energy -21.9961 kcal/mol@LB@Unfolding Energy - mRNA 1.97147 kcal/mol@LB@Unfolding Energy - sRNA 5.98953 kcal/mol@LB@@LB@Position - mRNA 78 -- 116@LB@Position - sRNA 57 -- 91@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 123 |
0.006073 |
0.1758 |
stm4355 |
yjeS |
-17.69 |
0.042665 |
80 -- 140 |
31 -- 90 |
putative Fe-S protein |
|
_____________79______________________________141\n_____________|_______________________________|\n_______5'-CGUU______________C________________AGUGU...UUA-3'\n______________GUUGC___CAUGAC_ACACAACA_C_CAGCC\n______________:||||___||::||_||||||||_|_||:||\n______________UAACG___GUGUUG_UGUGUUGU_G_GUUGG\n3'-UUU...CUGGU_____UUU______U________A_U_____CAUUC...UCA-5'\n_____________|_______________________________|\n_____________91______________________________30\n |
18 -- 24 |
71 -- 77 |
-27.2663 kcal/mol |
5.13395 kcal/mol |
8.62086 kcal/mol |
79 141@LB@ | |@LB@ 5'-CGUU C AGUGU...UUA-3'@LB@ GUUGC CAUGAC ACACAACA C CAGCC@LB@ :|||| ||::|| |||||||| | ||:||@LB@ UAACG GUGUUG UGUGUUGU G GUUGG@LB@3'-UUU...CUGGU UUU U A U CAUUC...UCA-5'@LB@ | |@LB@ 91 30@LB@@LB@@LB@Energy -17.69 kcal/mol@LB@Hybridization Energy -27.2663 kcal/mol@LB@Unfolding Energy - mRNA 5.13395 kcal/mol@LB@Unfolding Energy - sRNA 8.62086 kcal/mol@LB@@LB@Position - mRNA 80 -- 140@LB@Position - sRNA 31 -- 90@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 136 |
0.006805 |
0.1774 |
stm2812 |
N/A |
-16.76 |
0.060981 |
84 -- 153 |
36 -- 90 |
MFS transporter |
|
_____________83_____________________________________________154\n_____________|______________________________________________|\n5'-GGC...AUCCG__C________CUCUCCUCAAAGC______UU_______UC_____UCCCC...UGC-3'\n______________GC_AACGCAAU_____________GCACGA__CAUCACG__ACCGU\n______________||_|||:|||:_____________:|||:|__||||||:__|||||\n______________CG_UUGUGUUG_____________UGUGUU__GUAGUGU__UGGCA\n3'-UUU...GUUAA__U________U__________________________________UUCGG...UCA-5'\n_____________|______________________________________________|\n_____________91_____________________________________________35\n |
116 -- 122 |
66 -- 72 |
-26.7431 kcal/mol |
6.46375 kcal/mol |
9.42239 kcal/mol |
83 154@LB@ | |@LB@5'-GGC...AUCCG C CUCUCCUCAAAGC UU UC UCCCC...UGC-3'@LB@ GC AACGCAAU GCACGA CAUCACG ACCGU@LB@ || |||:|||: :|||:| ||||||: |||||@LB@ CG UUGUGUUG UGUGUU GUAGUGU UGGCA@LB@3'-UUU...GUUAA U U UUCGG...UCA-5'@LB@ | |@LB@ 91 35@LB@@LB@@LB@Energy -16.76 kcal/mol@LB@Hybridization Energy -26.7431 kcal/mol@LB@Unfolding Energy - mRNA 6.46375 kcal/mol@LB@Unfolding Energy - sRNA 9.42239 kcal/mol@LB@@LB@Position - mRNA 84 -- 153@LB@Position - sRNA 36 -- 90@LB@Position Seed - mRNA 116 -- 122@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 57 |
0.002298 |
0.14 |
stm3921 |
wecC |
-19.39 |
0.022107 |
89 -- 132 |
46 -- 91 |
UDP-N-acetyl-D-mannosamine dehydrogenase |
|
_____________88_____________________________________133\n_____________|______________________________________|\n5'-ACC...GCGUC___U__________AAAUG____________A______GCGCC...AUA-3'\n______________UGC__GCACGACGA_____AAUAUCA_AACC_UGAGCC\n______________|||__:|||:||:|_____||:||||_||||_|:||||\n______________ACG__UGUGUUGUU_____UUGUAGU_UUGG_AUUCGG\n3'-UUU...GGUUA___UU_________GUG_________G____C______UUUUC...UCA-5'\n_____________|______________________________________|\n_____________92_____________________________________45\n |
107 -- 113 |
68 -- 74 |
-32.9193 kcal/mol |
8.51619 kcal/mol |
11.8308 kcal/mol |
88 133@LB@ | |@LB@5'-ACC...GCGUC U AAAUG A GCGCC...AUA-3'@LB@ UGC GCACGACGA AAUAUCA AACC UGAGCC@LB@ ||| :|||:||:| ||:|||| |||| |:||||@LB@ ACG UGUGUUGUU UUGUAGU UUGG AUUCGG@LB@3'-UUU...GGUUA UU GUG G C UUUUC...UCA-5'@LB@ | |@LB@ 92 45@LB@@LB@@LB@Energy -19.39 kcal/mol@LB@Hybridization Energy -32.9193 kcal/mol@LB@Unfolding Energy - mRNA 8.51619 kcal/mol@LB@Unfolding Energy - sRNA 11.8308 kcal/mol@LB@@LB@Position - mRNA 89 -- 132@LB@Position - sRNA 46 -- 91@LB@Position Seed - mRNA 107 -- 113@LB@Position Seed - sRNA 68 -- 74@LB@ |
| 180 |
0.009911 |
0.1961 |
stm0199 |
stfF |
-15.44 |
0.100302 |
89 -- 133 |
44 -- 87 |
fimbrial protein |
|
_____________88________________134\n_____________|_________________|\n5'-ACC...AUUUC___________G_____GGUCC...AUU-3'\n______________AAUACAGCGGC_GCAGC\n______________||:|||:|::|_:||:|\n______________UUGUGUUGUUG_UGUUG\n3'-UUU...AACGU_________________UAGUG...UCA-5'\n_____________|_________________|\n_____________88________________43\n |
93 -- 99 |
77 -- 83 |
-16.9774 kcal/mol |
5.80505 kcal/mol |
3.59664 kcal/mol |
88 134@LB@ | |@LB@5'-ACC...AUUUC G GGUCC...AUU-3'@LB@ AAUACAGCGGC GCAGC@LB@ ||:|||:|::| :||:|@LB@ UUGUGUUGUUG UGUUG@LB@3'-UUU...AACGU UAGUG...UCA-5'@LB@ | |@LB@ 88 43@LB@@LB@@LB@Energy -15.44 kcal/mol@LB@Hybridization Energy -16.9774 kcal/mol@LB@Unfolding Energy - mRNA 5.80505 kcal/mol@LB@Unfolding Energy - sRNA 3.59664 kcal/mol@LB@@LB@Position - mRNA 89 -- 133@LB@Position - sRNA 44 -- 87@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 77 -- 83@LB@ |
| 81 |
0.003764 |
0.1596 |
stm0121 |
ftsL |
-18.45 |
0.031843 |
91 -- 225 |
48 -- 186 |
cell division protein FtsL |
|
_____________90__________________226\n_____________|___________________|\n5'-CGU...UGCCG__________A________GAAAA...UGC-3'\n______________GGUGAAAAAG_GGUAG_CU\n______________:|||||||||_|||||_||\n______________UCACUUUUUC_CCAUC_GA\n3'-UUU...GUCCU________________A__GCGAU...UCA-5'\n_____________|___________________|\n_____________187_________________47\n |
133 -- 139 |
129 -- 135 |
-20.6582 kcal/mol |
4.19087 kcal/mol |
6.37024 kcal/mol |
90 226@LB@ | |@LB@5'-CGU...UGCCG A GAAAA...UGC-3'@LB@ GGUGAAAAAG GGUAG CU@LB@ :||||||||| ||||| ||@LB@ UCACUUUUUC CCAUC GA@LB@3'-UUU...GUCCU A GCGAU...UCA-5'@LB@ | |@LB@ 187 47@LB@@LB@@LB@Energy -18.45 kcal/mol@LB@Hybridization Energy -20.6582 kcal/mol@LB@Unfolding Energy - mRNA 4.19087 kcal/mol@LB@Unfolding Energy - sRNA 6.37024 kcal/mol@LB@@LB@Position - mRNA 91 -- 225@LB@Position - sRNA 48 -- 186@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 129 -- 135@LB@ |
