32 |
0.001981 |
0.2094 |
b3110 |
yhaO |
-10.61 |
0.095420 |
268 -- 283 |
7 -- 23 |
putative transporter |
|
_____________267_______________284\n_____________|_________________|\n5'-AAU...AAUGA____G____________AGAAG...UCG-3'\n______________GUGA_AGCGAGUG_GCG\n______________:|||_|:|:|:||_|||\n______________UACU_UUGUUUAC_CGC\n3'-UUU...CCUAC____A________G___AGAAAG-5'\n_____________|_________________|\n_____________24________________6\n |
274 -- 280 |
11 -- 17 |
-15.5882 kcal/mol |
2.45682 kcal/mol |
2.52012 kcal/mol |
267 284@LB@ | |@LB@5'-AAU...AAUGA G AGAAG...UCG-3'@LB@ GUGA AGCGAGUG GCG@LB@ :||| |:|:|:|| |||@LB@ UACU UUGUUUAC CGC@LB@3'-UUU...CCUAC A G AGAAAG-5'@LB@ | |@LB@ 24 6@LB@@LB@@LB@Energy -10.61 kcal/mol@LB@Hybridization Energy -15.5882 kcal/mol@LB@Unfolding Energy - mRNA 2.45682 kcal/mol@LB@Unfolding Energy - sRNA 2.52012 kcal/mol@LB@@LB@Position - mRNA 268 -- 283@LB@Position - sRNA 7 -- 23@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 11 -- 17@LB@ |
33 |
0.002096 |
0.2094 |
b0937 |
ssuE |
-11.36 |
0.070700 |
201 -- 209 |
5 -- 13 |
NAD(P)H-dependent FMN reductase |
|
_____________200_______210\n_____________|_________|\n5'-CUG...AGAGU_________AUCAC...AGG-3'\n______________AUGCGUGUC\n______________|||||:|||\n______________UACGCGCAG\n3'-UUU...UUGUU_________AAAG-5'\n_____________|_________|\n_____________14________4\n |
203 -- 209 |
5 -- 11 |
-14.6108 kcal/mol |
2.09491 kcal/mol |
1.15134 kcal/mol |
200 210@LB@ | |@LB@5'-CUG...AGAGU AUCAC...AGG-3'@LB@ AUGCGUGUC@LB@ |||||:|||@LB@ UACGCGCAG@LB@3'-UUU...UUGUU AAAG-5'@LB@ | |@LB@ 14 4@LB@@LB@@LB@Energy -11.36 kcal/mol@LB@Hybridization Energy -14.6108 kcal/mol@LB@Unfolding Energy - mRNA 2.09491 kcal/mol@LB@Unfolding Energy - sRNA 1.15134 kcal/mol@LB@@LB@Position - mRNA 201 -- 209@LB@Position - sRNA 5 -- 13@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 5 -- 11@LB@ |
34 |
0.002145 |
0.2094 |
b1939 |
fliG |
-13.29 |
0.032191 |
145 -- 162 |
6 -- 22 |
flagellar motor switching and energizing component |
|
_____________144________________163\n_____________|__________________|\n5'-AGC...AUGUC_________UCC______GGUGG...AAG-3'\n______________UGAUAACGA___GCGCGU\n______________|||||||:|___||||||\n______________ACUAUUGUU___CGCGCA\n3'-UUU...CUACU_________UA_______GAAAG-5'\n_____________|__________________|\n_____________23_________________5\n |
147 -- 153 |
14 -- 20 |
-19.5862 kcal/mol |
5.04831 kcal/mol |
1.24718 kcal/mol |
144 163@LB@ | |@LB@5'-AGC...AUGUC UCC GGUGG...AAG-3'@LB@ UGAUAACGA GCGCGU@LB@ |||||||:| ||||||@LB@ ACUAUUGUU CGCGCA@LB@3'-UUU...CUACU UA GAAAG-5'@LB@ | |@LB@ 23 5@LB@@LB@@LB@Energy -13.29 kcal/mol@LB@Hybridization Energy -19.5862 kcal/mol@LB@Unfolding Energy - mRNA 5.04831 kcal/mol@LB@Unfolding Energy - sRNA 1.24718 kcal/mol@LB@@LB@Position - mRNA 145 -- 162@LB@Position - sRNA 6 -- 22@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 14 -- 20@LB@ |
35 |
0.002165 |
0.2094 |
b2714 |
ascG |
-14.61 |
0.018547 |
188 -- 213 |
10 -- 30 |
asc operon transcriptional repressor; prpBC operon repressor |
|
_____________187________________________214\n_____________|__________________________|\n5'-AAA...UGUAA________AAA_________CG____UGGAA...AAG-3'\n______________AGGGAUGA___UGAUGACGA__AUGC\n______________||||||||___||||:||:|__||||\n______________UCCCUACU___ACUAUUGUU__UACG\n3'-UUU...UUAAG__________________________CGCAG...AAG-5'\n_____________|__________________________|\n_____________31_________________________9\n |
201 -- 207 |
14 -- 20 |
-25.4703 kcal/mol |
3.44882 kcal/mol |
7.41066 kcal/mol |
187 214@LB@ | |@LB@5'-AAA...UGUAA AAA CG UGGAA...AAG-3'@LB@ AGGGAUGA UGAUGACGA AUGC@LB@ |||||||| ||||:||:| ||||@LB@ UCCCUACU ACUAUUGUU UACG@LB@3'-UUU...UUAAG CGCAG...AAG-5'@LB@ | |@LB@ 31 9@LB@@LB@@LB@Energy -14.61 kcal/mol@LB@Hybridization Energy -25.4703 kcal/mol@LB@Unfolding Energy - mRNA 3.44882 kcal/mol@LB@Unfolding Energy - sRNA 7.41066 kcal/mol@LB@@LB@Position - mRNA 188 -- 213@LB@Position - sRNA 10 -- 30@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 14 -- 20@LB@ |
36 |
0.002407 |
0.2206 |
b2550 |
yphH |
-13.17 |
0.033778 |
238 -- 251 |
7 -- 20 |
putative DNA-binding transcriptional regulator |
|
_____________237____________252\n_____________|______________|\n5'-AGG...CCACC______________AUUCU...UGG-3'\n______________AUAACAAAUGCGUG\n______________||||||||||||:|\n______________UAUUGUUUACGCGC\n3'-UUU...ACUAC______________AGAAAG-5'\n_____________|______________|\n_____________21_____________6\n |
245 -- 251 |
7 -- 13 |
-19.0929 kcal/mol |
4.67933 kcal/mol |
1.23906 kcal/mol |
237 252@LB@ | |@LB@5'-AGG...CCACC AUUCU...UGG-3'@LB@ AUAACAAAUGCGUG@LB@ ||||||||||||:|@LB@ UAUUGUUUACGCGC@LB@3'-UUU...ACUAC AGAAAG-5'@LB@ | |@LB@ 21 6@LB@@LB@@LB@Energy -13.17 kcal/mol@LB@Hybridization Energy -19.0929 kcal/mol@LB@Unfolding Energy - mRNA 4.67933 kcal/mol@LB@Unfolding Energy - sRNA 1.23906 kcal/mol@LB@@LB@Position - mRNA 238 -- 251@LB@Position - sRNA 7 -- 20@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 7 -- 13@LB@ |
37 |
0.00241 |
0.2206 |
b2455 |
eutE |
-11.61 |
0.064061 |
286 -- 298 |
3 -- 15 |
aldehyde oxidoreductase ethanolamine utilization protein |
|
_____________285___________299\n_____________|_____________|\n5'-GGU...UCAUG_____G_______CG-3'\n______________AGAUG_GCGUUUU\n______________|:|||_||||:||\n______________UUUAC_CGCAGAA\n3'-UUU...UAUUG_____G_______AG-5'\n_____________|_____________|\n_____________16____________2\n |
292 -- 298 |
3 -- 9 |
-14.5549 kcal/mol |
1.73631 kcal/mol |
1.20903 kcal/mol |
285 299@LB@ | |@LB@5'-GGU...UCAUG G CG-3'@LB@ AGAUG GCGUUUU@LB@ |:||| ||||:||@LB@ UUUAC CGCAGAA@LB@3'-UUU...UAUUG G AG-5'@LB@ | |@LB@ 16 2@LB@@LB@@LB@Energy -11.61 kcal/mol@LB@Hybridization Energy -14.5549 kcal/mol@LB@Unfolding Energy - mRNA 1.73631 kcal/mol@LB@Unfolding Energy - sRNA 1.20903 kcal/mol@LB@@LB@Position - mRNA 286 -- 298@LB@Position - sRNA 3 -- 15@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 3 -- 9@LB@ |
38 |
0.002512 |
0.2224 |
b0436 |
tig |
-7.88 |
0.265562 |
192 -- 204 |
10 -- 21 |
peptidyl-prolyl cis/trans isomerase (trigger factor) |
|
_____________191___________205\n_____________|_____________|\n5'-UAC...UUUGA_______A_____AAGUU...UCA-3'\n______________GGUAACA_GAUGC\n______________|:|||||_:||||\n______________CUAUUGU_UUACG\n3'-UUU...UACUA_____________CGCAG...AAG-5'\n_____________|_____________|\n_____________22____________9\n |
192 -- 198 |
15 -- 21 |
-12.2618 kcal/mol |
3.15229 kcal/mol |
1.23076 kcal/mol |
191 205@LB@ | |@LB@5'-UAC...UUUGA A AAGUU...UCA-3'@LB@ GGUAACA GAUGC@LB@ |:||||| :||||@LB@ CUAUUGU UUACG@LB@3'-UUU...UACUA CGCAG...AAG-5'@LB@ | |@LB@ 22 9@LB@@LB@@LB@Energy -7.88 kcal/mol@LB@Hybridization Energy -12.2618 kcal/mol@LB@Unfolding Energy - mRNA 3.15229 kcal/mol@LB@Unfolding Energy - sRNA 1.23076 kcal/mol@LB@@LB@Position - mRNA 192 -- 204@LB@Position - sRNA 10 -- 21@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 15 -- 21@LB@ |
39 |
0.002561 |
0.2224 |
b3845 |
fadA |
-14.30 |
0.021162 |
112 -- 126 |
5 -- 20 |
3-ketoacyl-CoA thiolase (thiolase I) |
|
_____________111______________127\n_____________|________________|\n5'-UCC...UCUGC________________AUAAC...AUU-3'\n______________GUAAUAAA_GCGCGUC\n______________:|||:|||_|||||||\n______________UAUUGUUU_CGCGCAG\n3'-UUU...ACUAC________A_______AAAG-5'\n_____________|________________|\n_____________21_______________4\n |
120 -- 126 |
5 -- 11 |
-19.3309 kcal/mol |
3.78617 kcal/mol |
1.24804 kcal/mol |
111 127@LB@ | |@LB@5'-UCC...UCUGC AUAAC...AUU-3'@LB@ GUAAUAAA GCGCGUC@LB@ :|||:||| |||||||@LB@ UAUUGUUU CGCGCAG@LB@3'-UUU...ACUAC A AAAG-5'@LB@ | |@LB@ 21 4@LB@@LB@@LB@Energy -14.30 kcal/mol@LB@Hybridization Energy -19.3309 kcal/mol@LB@Unfolding Energy - mRNA 3.78617 kcal/mol@LB@Unfolding Energy - sRNA 1.24804 kcal/mol@LB@@LB@Position - mRNA 112 -- 126@LB@Position - sRNA 5 -- 20@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 5 -- 11@LB@ |
41 |
0.00276 |
0.2279 |
b0889 |
lrp |
-10.49 |
0.100208 |
207 -- 221 |
8 -- 21 |
leucine-responsive global transcriptional regulator |
|
_____________206_____________222\n_____________|_______________|\n5'-GUG...UGGUA_________AA____CCUGG...AGC-3'\n______________GAUAGCAAG__GCGC\n______________||||:|||:__||||\n______________CUAUUGUUU__CGCG\n3'-UUU...UACUA_________A_____CAGAAAG-5'\n_____________|_______________|\n_____________22______________7\n |
209 -- 215 |
13 -- 19 |
-15.2704 kcal/mol |
3.5472 kcal/mol |
1.23638 kcal/mol |
206 222@LB@ | |@LB@5'-GUG...UGGUA AA CCUGG...AGC-3'@LB@ GAUAGCAAG GCGC@LB@ ||||:|||: ||||@LB@ CUAUUGUUU CGCG@LB@3'-UUU...UACUA A CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -15.2704 kcal/mol@LB@Unfolding Energy - mRNA 3.5472 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 207 -- 221@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 13 -- 19@LB@ |
42 |
0.002847 |
0.2296 |
b1638 |
pdxH |
-9.07 |
0.172497 |
29 -- 35 |
5 -- 11 |
pyridoxine 5'-phosphate oxidase |
|
_____________28______36\n_____________|_______|\n5'-UCU...CUGGC_______ACACU...CCC-3'\n______________GCGCGUU\n______________||||||:\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
29 -- 35 |
5 -- 11 |
-12.2635 kcal/mol |
2.08033 kcal/mol |
1.11145 kcal/mol |
28 36@LB@ | |@LB@5'-UCU...CUGGC ACACU...CCC-3'@LB@ GCGCGUU@LB@ ||||||:@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -9.07 kcal/mol@LB@Hybridization Energy -12.2635 kcal/mol@LB@Unfolding Energy - mRNA 2.08033 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 29 -- 35@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 29 -- 35@LB@Position Seed - sRNA 5 -- 11@LB@ |