31 |
0.001682 |
0.1727 |
b1887 |
cheW |
-12.93 |
0.037697 |
13 -- 28 |
70 -- 86 |
purine-binding chemotaxis protein |
|
_____________12________________29\n_____________|_________________|\n5'-GUG...AAUUA_________________UUGUG...UCC-3'\n______________AUUG_GUCAACACCAGG\n______________|:||_|:||||||||||\n______________UGAC_CGGUUGUGGUCC\n3'-UUU...GCUUA____G____________CUUUA...GUG-5'\n_____________|_________________|\n_____________87________________69\n |
22 -- 28 |
70 -- 76 |
-24.746 kcal/mol |
4.53921 kcal/mol |
7.27772 kcal/mol |
12 29@LB@ | |@LB@5'-GUG...AAUUA UUGUG...UCC-3'@LB@ AUUG GUCAACACCAGG@LB@ |:|| |:||||||||||@LB@ UGAC CGGUUGUGGUCC@LB@3'-UUU...GCUUA G CUUUA...GUG-5'@LB@ | |@LB@ 87 69@LB@@LB@@LB@Energy -12.93 kcal/mol@LB@Hybridization Energy -24.746 kcal/mol@LB@Unfolding Energy - mRNA 4.53921 kcal/mol@LB@Unfolding Energy - sRNA 7.27772 kcal/mol@LB@@LB@Position - mRNA 13 -- 28@LB@Position - sRNA 70 -- 86@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 70 -- 76@LB@ |
32 |
0.001707 |
0.1727 |
b3606 |
trmL |
-13.76 |
0.025837 |
263 -- 277 |
71 -- 85 |
tRNA Leu mC34 mU34 2'-O-methyltransferase SAM-dependent |
|
_____________262_____________278\n_____________|_______________|\n5'-UAG...CGUCU_______________CUUUC...AAC-3'\n______________UUGCGCUAAUACCGG\n______________:|||||:||:|||:|\n______________GACGCGGUUGUGGUC\n3'-UUU...CUUAU_______________CCUUU...GUG-5'\n_____________|_______________|\n_____________86______________70\n |
271 -- 277 |
71 -- 77 |
-23.7581 kcal/mol |
2.7368 kcal/mol |
7.26103 kcal/mol |
262 278@LB@ | |@LB@5'-UAG...CGUCU CUUUC...AAC-3'@LB@ UUGCGCUAAUACCGG@LB@ :|||||:||:|||:|@LB@ GACGCGGUUGUGGUC@LB@3'-UUU...CUUAU CCUUU...GUG-5'@LB@ | |@LB@ 86 70@LB@@LB@@LB@Energy -13.76 kcal/mol@LB@Hybridization Energy -23.7581 kcal/mol@LB@Unfolding Energy - mRNA 2.7368 kcal/mol@LB@Unfolding Energy - sRNA 7.26103 kcal/mol@LB@@LB@Position - mRNA 263 -- 277@LB@Position - sRNA 71 -- 85@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 71 -- 77@LB@ |
33 |
0.001709 |
0.1727 |
b0023 |
rpsT |
-12.95 |
0.037339 |
65 -- 78 |
72 -- 85 |
30S ribosomal subunit protein S20 |
|
_____________64_____________79\n_____________|______________|\n5'-UGA...GAAUC________U_____CGUAA...AGA-3'\n______________CUGCGCCA_CACUA\n______________||||||||_|||:|\n______________GACGCGGU_GUGGU\n3'-UUU...CUUAU________U_____CCCUU...GUG-5'\n_____________|______________|\n_____________86_____________71\n |
66 -- 72 |
78 -- 84 |
-22.3173 kcal/mol |
2.13275 kcal/mol |
7.23443 kcal/mol |
64 79@LB@ | |@LB@5'-UGA...GAAUC U CGUAA...AGA-3'@LB@ CUGCGCCA CACUA@LB@ |||||||| |||:|@LB@ GACGCGGU GUGGU@LB@3'-UUU...CUUAU U CCCUU...GUG-5'@LB@ | |@LB@ 86 71@LB@@LB@@LB@Energy -12.95 kcal/mol@LB@Hybridization Energy -22.3173 kcal/mol@LB@Unfolding Energy - mRNA 2.13275 kcal/mol@LB@Unfolding Energy - sRNA 7.23443 kcal/mol@LB@@LB@Position - mRNA 65 -- 78@LB@Position - sRNA 72 -- 85@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 78 -- 84@LB@ |
34 |
0.001871 |
0.1727 |
b4485 |
ytfR |
-15.36 |
0.012458 |
204 -- 227 |
64 -- 86 |
putative sugar ABC transporter ATPase |
|
_____________203_______________________228\n_____________|_________________________|\n5'-CCU...CCAUG__GAC__A_________________CUCCG...GCC-3'\n______________AC___CG_CCAACACCA_GGAGAUC\n______________||___||_|||||||||_|||:|||\n______________UG___GC_GGUUGUGGU_CCUUUAG\n3'-UUU...GCUUA__AC_____________C_______AACCG...GUG-5'\n_____________|_________________________|\n_____________87________________________63\n |
221 -- 227 |
64 -- 70 |
-26.9267 kcal/mol |
4.18191 kcal/mol |
7.38435 kcal/mol |
203 228@LB@ | |@LB@5'-CCU...CCAUG GAC A CUCCG...GCC-3'@LB@ AC CG CCAACACCA GGAGAUC@LB@ || || ||||||||| |||:|||@LB@ UG GC GGUUGUGGU CCUUUAG@LB@3'-UUU...GCUUA AC C AACCG...GUG-5'@LB@ | |@LB@ 87 63@LB@@LB@@LB@Energy -15.36 kcal/mol@LB@Hybridization Energy -26.9267 kcal/mol@LB@Unfolding Energy - mRNA 4.18191 kcal/mol@LB@Unfolding Energy - sRNA 7.38435 kcal/mol@LB@@LB@Position - mRNA 204 -- 227@LB@Position - sRNA 64 -- 86@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 64 -- 70@LB@ |
35 |
0.001921 |
0.1727 |
b1849 |
purT |
-12.35 |
0.048961 |
166 -- 192 |
67 -- 88 |
phosphoribosylglycinamide formyltransferase 2 |
|
_____________165_________________________193\n_____________|___________________________|\n5'-UUU...CGUUU_________G__GAAUUA_________UAUUC...GUC-3'\n______________AUACUGCGC_CG______AUCAGGGGA\n______________|||||||||_|:______|:|||||:|\n______________UAUGACGCG_GU______UGGUCCCUU\n3'-UUU...GCGCU____________UG_____________UAGAA...GUG-5'\n_____________|___________________________|\n_____________89__________________________66\n |
186 -- 192 |
67 -- 73 |
-25.9621 kcal/mol |
6.22738 kcal/mol |
7.38319 kcal/mol |
165 193@LB@ | |@LB@5'-UUU...CGUUU G GAAUUA UAUUC...GUC-3'@LB@ AUACUGCGC CG AUCAGGGGA@LB@ ||||||||| |: |:|||||:|@LB@ UAUGACGCG GU UGGUCCCUU@LB@3'-UUU...GCGCU UG UAGAA...GUG-5'@LB@ | |@LB@ 89 66@LB@@LB@@LB@Energy -12.35 kcal/mol@LB@Hybridization Energy -25.9621 kcal/mol@LB@Unfolding Energy - mRNA 6.22738 kcal/mol@LB@Unfolding Energy - sRNA 7.38319 kcal/mol@LB@@LB@Position - mRNA 166 -- 192@LB@Position - sRNA 67 -- 88@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 67 -- 73@LB@ |
36 |
0.001988 |
0.1727 |
b2573 |
rpoE |
-9.66 |
0.161217 |
247 -- 255 |
64 -- 72 |
RNA polymerase sigma E factor |
|
_____________246_______256\n_____________|_________|\n5'-ACA...CCAGA_________AGAAA...UGG-3'\n______________AGGGAGAUC\n______________|||||:|||\n______________UCCCUUUAG\n3'-UUU...UGUGG_________AACCG...GUG-5'\n_____________|_________|\n_____________73________63\n |
249 -- 255 |
64 -- 70 |
-13.5601 kcal/mol |
1.40253 kcal/mol |
2.50058 kcal/mol |
246 256@LB@ | |@LB@5'-ACA...CCAGA AGAAA...UGG-3'@LB@ AGGGAGAUC@LB@ |||||:|||@LB@ UCCCUUUAG@LB@3'-UUU...UGUGG AACCG...GUG-5'@LB@ | |@LB@ 73 63@LB@@LB@@LB@Energy -9.66 kcal/mol@LB@Hybridization Energy -13.5601 kcal/mol@LB@Unfolding Energy - mRNA 1.40253 kcal/mol@LB@Unfolding Energy - sRNA 2.50058 kcal/mol@LB@@LB@Position - mRNA 247 -- 255@LB@Position - sRNA 64 -- 72@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 64 -- 70@LB@ |
37 |
0.002023 |
0.1727 |
b2197 |
ccmE |
-14.61 |
0.017549 |
166 -- 218 |
48 -- 94 |
periplasmic heme chaperone |
|
_____________165___________________________________________________________219\n_____________|_____________________________________________________________|\n5'-CCU...GUGAG_____UUUAC______________G____A_____________AUGAAUAUUC________AACCG...AUA-3'\n______________GCGCG_____GUGCUGCG_CAACA_CAGG________GGCUGC__________GCCGUAAA\n______________|||||_____:|:|||||_|||||_||||________||||||__________||||||||\n______________CGCGC_____UAUGACGC_GUUGU_GUCC________CCGACG__________CGGCAUUU\n3'-UUU...CCCCA_____U____________G_____G____CUUUAGAA________________________AAUAA...GUG-5'\n_____________|_____________________________________________________________|\n_____________95____________________________________________________________47\n |
212 -- 218 |
48 -- 54 |
-51.9512 kcal/mol |
20.0441 kcal/mol |
17.2978 kcal/mol |
165 219@LB@ | |@LB@5'-CCU...GUGAG UUUAC G A AUGAAUAUUC AACCG...AUA-3'@LB@ GCGCG GUGCUGCG CAACA CAGG GGCUGC GCCGUAAA@LB@ ||||| :|:||||| ||||| |||| |||||| ||||||||@LB@ CGCGC UAUGACGC GUUGU GUCC CCGACG CGGCAUUU@LB@3'-UUU...CCCCA U G G CUUUAGAA AAUAA...GUG-5'@LB@ | |@LB@ 95 47@LB@@LB@@LB@Energy -14.61 kcal/mol@LB@Hybridization Energy -51.9512 kcal/mol@LB@Unfolding Energy - mRNA 20.0441 kcal/mol@LB@Unfolding Energy - sRNA 17.2978 kcal/mol@LB@@LB@Position - mRNA 166 -- 218@LB@Position - sRNA 48 -- 94@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 48 -- 54@LB@ |
38 |
0.002093 |
0.1727 |
b1174 |
minE |
-11.55 |
0.070176 |
37 -- 55 |
69 -- 87 |
cell division topological specificity factor |
|
_____________36___________________56\n_____________|____________________|\n5'-AAC...AGUAU_________UCUA_______UGAAC...AUG-3'\n______________UGC_GCGCC____ACCAGGG\n______________|:|_|||||____|||||||\n______________AUG_CGCGG____UGGUCCC\n3'-UUU...CGCUU___A_____UUG________UUUAG...GUG-5'\n_____________|____________________|\n_____________88___________________68\n |
49 -- 55 |
69 -- 75 |
-25.7186 kcal/mol |
6.79304 kcal/mol |
7.3743 kcal/mol |
36 56@LB@ | |@LB@5'-AAC...AGUAU UCUA UGAAC...AUG-3'@LB@ UGC GCGCC ACCAGGG@LB@ |:| ||||| |||||||@LB@ AUG CGCGG UGGUCCC@LB@3'-UUU...CGCUU A UUG UUUAG...GUG-5'@LB@ | |@LB@ 88 68@LB@@LB@@LB@Energy -11.55 kcal/mol@LB@Hybridization Energy -25.7186 kcal/mol@LB@Unfolding Energy - mRNA 6.79304 kcal/mol@LB@Unfolding Energy - sRNA 7.3743 kcal/mol@LB@@LB@Position - mRNA 37 -- 55@LB@Position - sRNA 69 -- 87@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 69 -- 75@LB@ |
39 |
0.002105 |
0.1727 |
b3249 |
mreD |
-13.67 |
0.026871 |
102 -- 115 |
74 -- 87 |
cell wall structural complex MreBCD transmembrane component MreD |
|
_____________101____________116\n_____________|______________|\n5'-CCU...GCGCC______________AGCCU...UUU-3'\n______________UGCUGCGCCGACAC\n______________|:|||||||:||||\n______________AUGACGCGGUUGUG\n3'-UUU...CGCUU______________GUCCC...GUG-5'\n_____________|______________|\n_____________88_____________73\n |
109 -- 115 |
74 -- 80 |
-25.8251 kcal/mol |
5.39353 kcal/mol |
6.75739 kcal/mol |
101 116@LB@ | |@LB@5'-CCU...GCGCC AGCCU...UUU-3'@LB@ UGCUGCGCCGACAC@LB@ |:|||||||:||||@LB@ AUGACGCGGUUGUG@LB@3'-UUU...CGCUU GUCCC...GUG-5'@LB@ | |@LB@ 88 73@LB@@LB@@LB@Energy -13.67 kcal/mol@LB@Hybridization Energy -25.8251 kcal/mol@LB@Unfolding Energy - mRNA 5.39353 kcal/mol@LB@Unfolding Energy - sRNA 6.75739 kcal/mol@LB@@LB@Position - mRNA 102 -- 115@LB@Position - sRNA 74 -- 87@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 74 -- 80@LB@ |
40 |
0.002113 |
0.1727 |
b2314 |
dedD |
-12.04 |
0.056230 |
10 -- 25 |
1 -- 19 |
membrane-anchored periplasmic protein involved in septation |
|
_____________9___________________26\n_____________|___________________|\n5'-UUG...GCGCC____GAA____________GGUGC...AUU-3'\n______________ACUG______GGGCCGCGC\n______________||||______:||||||:|\n______________UGAC______UCCGGCGUG\n3'-UUU...UGUCG____AAAAAG_________-5'\n_____________|__________________|\n_____________20_________________1\n |
19 -- 25 |
1 -- 7 |
-21.4331 kcal/mol |
3.12458 kcal/mol |
6.26391 kcal/mol |
9 26@LB@ | |@LB@5'-UUG...GCGCC GAA GGUGC...AUU-3'@LB@ ACUG GGGCCGCGC@LB@ |||| :||||||:|@LB@ UGAC UCCGGCGUG@LB@3'-UUU...UGUCG AAAAAG -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -12.04 kcal/mol@LB@Hybridization Energy -21.4331 kcal/mol@LB@Unfolding Energy - mRNA 3.12458 kcal/mol@LB@Unfolding Energy - sRNA 6.26391 kcal/mol@LB@@LB@Position - mRNA 10 -- 25@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 1 -- 7@LB@ |