| 177 |
0.01751 |
0.3104 |
b2900 |
yqfB |
-9.18 |
0.165418 |
52 -- 70 |
1 -- 17 |
UPF0267 family protein |
|
_____________51__________________71\n_____________|___________________|\n5'-UUC...ACGUC________U__GCC_____CCGCC...UCA-3'\n______________ACAAAUGC_CG___CUUUU\n______________||||||||_||___||||:\n______________UGUUUACG_GC___GAAAG\n3'-UUU...ACUAU________C__A_______-5'\n_____________|__________________|\n_____________18_________________1\n |
53 -- 59 |
10 -- 16 |
-13.5578 kcal/mol |
3.13415 kcal/mol |
1.23994 kcal/mol |
51 71@LB@ | |@LB@5'-UUC...ACGUC U GCC CCGCC...UCA-3'@LB@ ACAAAUGC CG CUUUU@LB@ |||||||| || ||||:@LB@ UGUUUACG GC GAAAG@LB@3'-UUU...ACUAU C A -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -9.18 kcal/mol@LB@Hybridization Energy -13.5578 kcal/mol@LB@Unfolding Energy - mRNA 3.13415 kcal/mol@LB@Unfolding Energy - sRNA 1.23994 kcal/mol@LB@@LB@Position - mRNA 52 -- 70@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 23 |
0.001384 |
0.1943 |
b0399 |
phoB |
-10.33 |
0.106753 |
53 -- 63 |
8 -- 18 |
response regulator in two-component regulatory system with PhoR |
|
_____________52__________64\n_____________|___________|\n5'-AGG...ACCCA___________CAUUU...AAG-3'\n______________AACAGAUGUGC\n______________||||:|||:||\n______________UUGUUUACGCG\n3'-UUU...UACUA___________CAGAAAG-5'\n_____________|___________|\n_____________19__________7\n |
57 -- 63 |
8 -- 14 |
-14.9736 kcal/mol |
3.44457 kcal/mol |
1.20363 kcal/mol |
52 64@LB@ | |@LB@5'-AGG...ACCCA CAUUU...AAG-3'@LB@ AACAGAUGUGC@LB@ ||||:|||:||@LB@ UUGUUUACGCG@LB@3'-UUU...UACUA CAGAAAG-5'@LB@ | |@LB@ 19 7@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -14.9736 kcal/mol@LB@Unfolding Energy - mRNA 3.44457 kcal/mol@LB@Unfolding Energy - sRNA 1.20363 kcal/mol@LB@@LB@Position - mRNA 53 -- 63@LB@Position - sRNA 8 -- 18@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 2 |
9.051e-06 |
0.01532 |
b2745 |
truD |
-15.77 |
0.011349 |
54 -- 69 |
2 -- 17 |
tRNA(Glu) pseudouridine(13) synthase |
|
_____________53_______________70\n_____________|________________|\n5'-AAC...AUUCC____________G___AUUGC...UGG-3'\n______________ACAAAUGCGCGU_UUU\n______________||||||||||||_|||\n______________UGUUUACGCGCA_AAA\n3'-UUU...ACUAU____________G___G-5'\n_____________|________________|\n_____________18_______________1\n |
59 -- 65 |
6 -- 12 |
-22.0257 kcal/mol |
5.01487 kcal/mol |
1.23894 kcal/mol |
53 70@LB@ | |@LB@5'-AAC...AUUCC G AUUGC...UGG-3'@LB@ ACAAAUGCGCGU UUU@LB@ |||||||||||| |||@LB@ UGUUUACGCGCA AAA@LB@3'-UUU...ACUAU G G-5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -15.77 kcal/mol@LB@Hybridization Energy -22.0257 kcal/mol@LB@Unfolding Energy - mRNA 5.01487 kcal/mol@LB@Unfolding Energy - sRNA 1.23894 kcal/mol@LB@@LB@Position - mRNA 54 -- 69@LB@Position - sRNA 2 -- 17@LB@Position Seed - mRNA 59 -- 65@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 157 |
0.01467 |
0.3104 |
b0906 |
ycaP |
-12.44 |
0.045773 |
54 -- 69 |
5 -- 18 |
UPF0702 family putative inner membrane protein |
|
_____________53_______________70\n_____________|________________|\n5'-AGU...CCGGG_________UU_____AUGAA...UCU-3'\n______________GAUAAAUGU__GCGUC\n______________:|:|||||:__|||||\n______________UUGUUUACG__CGCAG\n3'-UUU...UACUA________________AAAG-5'\n_____________|________________|\n_____________19_______________4\n |
56 -- 62 |
10 -- 16 |
-16.0437 kcal/mol |
2.38303 kcal/mol |
1.2243 kcal/mol |
53 70@LB@ | |@LB@5'-AGU...CCGGG UU AUGAA...UCU-3'@LB@ GAUAAAUGU GCGUC@LB@ :|:|||||: |||||@LB@ UUGUUUACG CGCAG@LB@3'-UUU...UACUA AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -12.44 kcal/mol@LB@Hybridization Energy -16.0437 kcal/mol@LB@Unfolding Energy - mRNA 2.38303 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 54 -- 69@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 56 -- 62@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 119 |
0.01215 |
0.3104 |
b3691 |
dgoT |
-8.17 |
0.239341 |
58 -- 68 |
8 -- 21 |
D-galactonate transporter |
|
_____________57_____________69\n_____________|______________|\n5'-GUG...AUGAA______________AGCAG...CCA-3'\n______________GAUAACA___GCGU\n______________|||||||___|||:\n______________CUAUUGU___CGCG\n3'-UUU...UACUA_______UUA____CAGAAAG-5'\n_____________|______________|\n_____________22_____________7\n |
58 -- 64 |
15 -- 21 |
-12.2033 kcal/mol |
2.79285 kcal/mol |
1.23638 kcal/mol |
57 69@LB@ | |@LB@5'-GUG...AUGAA AGCAG...CCA-3'@LB@ GAUAACA GCGU@LB@ ||||||| |||:@LB@ CUAUUGU CGCG@LB@3'-UUU...UACUA UUA CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -8.17 kcal/mol@LB@Hybridization Energy -12.2033 kcal/mol@LB@Unfolding Energy - mRNA 2.79285 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 58 -- 68@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 1 |
0 |
0 |
b2687 |
luxS |
-86.29 |
0.000000 |
61 -- 132 |
1 -- 72 |
S-ribosylhomocysteine lyase |
|
_____________60_______________________________________________________________________133\n_____________|________________________________________________________________________|\n5'-GAA...AAAGA________________________________________________________________________AUAUA...UCA-3'\n______________AAAAGGCCACUCGUGAGUGGCCAAAAUUUCAUCUCUGAAUUCAGGGAUGAUGAUAACAAAUGCGCGUCUUUC\n______________||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________UUUUCCGGUGAGCACUCACCGGUUUUAAAGUAGAGACUUAAGUCCCUACUACUAUUGUUUACGCGCAGAAAG\n___________3'-________________________________________________________________________-5'\n______________|______________________________________________________________________|\n______________72_____________________________________________________________________1\n |
126 -- 132 |
1 -- 7 |
-138.099 kcal/mol |
30.0464 kcal/mol |
21.7639 kcal/mol |
60 133@LB@ | |@LB@5'-GAA...AAAGA AUAUA...UCA-3'@LB@ AAAAGGCCACUCGUGAGUGGCCAAAAUUUCAUCUCUGAAUUCAGGGAUGAUGAUAACAAAUGCGCGUCUUUC@LB@ ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ UUUUCCGGUGAGCACUCACCGGUUUUAAAGUAGAGACUUAAGUCCCUACUACUAUUGUUUACGCGCAGAAAG@LB@ 3'- -5'@LB@ | |@LB@ 72 1@LB@@LB@@LB@Energy -86.29 kcal/mol@LB@Hybridization Energy -138.099 kcal/mol@LB@Unfolding Energy - mRNA 30.0464 kcal/mol@LB@Unfolding Energy - sRNA 21.7639 kcal/mol@LB@@LB@Position - mRNA 61 -- 132@LB@Position - sRNA 1 -- 72@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 143 |
0.01362 |
0.3104 |
b3284 |
smg |
-7.50 |
0.302399 |
64 -- 82 |
5 -- 21 |
DUF494 family putative periplasmic protein |
|
_____________63__________________83\n_____________|___________________|\n5'-UUC...GAUGA_______CC__U__A____GUCGC...CAG-3'\n______________GGUAACA__UG_UG_CGUC\n______________|:|||||__||_:|_||||\n______________CUAUUGU__AC_GC_GCAG\n3'-UUU...UACUA_______UU__________AAAG-5'\n_____________|___________________|\n_____________22__________________4\n |
64 -- 70 |
15 -- 21 |
-13.2614 kcal/mol |
4.51132 kcal/mol |
1.24955 kcal/mol |
63 83@LB@ | |@LB@5'-UUC...GAUGA CC U A GUCGC...CAG-3'@LB@ GGUAACA UG UG CGUC@LB@ |:||||| || :| ||||@LB@ CUAUUGU AC GC GCAG@LB@3'-UUU...UACUA UU AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -7.50 kcal/mol@LB@Hybridization Energy -13.2614 kcal/mol@LB@Unfolding Energy - mRNA 4.51132 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 64 -- 82@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 150 |
0.01436 |
0.3104 |
b3951 |
pflD |
-11.87 |
0.057659 |
67 -- 75 |
5 -- 13 |
putative glycine radical domain-containing pyruvate formate-lyase |
b0823 |
_____________66________76\n_____________|_________|\n5'-GAU...CCAUC_________AACAU...AAA-3'\n______________GUGCGCGUC\n______________:||||||||\n______________UACGCGCAG\n3'-UUU...UUGUU_________AAAG-5'\n_____________|_________|\n_____________14________4\n |
69 -- 75 |
5 -- 11 |
-16.8274 kcal/mol |
3.80607 kcal/mol |
1.15134 kcal/mol |
66 76@LB@ | |@LB@5'-GAU...CCAUC AACAU...AAA-3'@LB@ GUGCGCGUC@LB@ :||||||||@LB@ UACGCGCAG@LB@3'-UUU...UUGUU AAAG-5'@LB@ | |@LB@ 14 4@LB@@LB@@LB@Energy -11.87 kcal/mol@LB@Hybridization Energy -16.8274 kcal/mol@LB@Unfolding Energy - mRNA 3.80607 kcal/mol@LB@Unfolding Energy - sRNA 1.15134 kcal/mol@LB@@LB@Position - mRNA 67 -- 75@LB@Position - sRNA 5 -- 13@LB@Position Seed - mRNA 69 -- 75@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 66 |
0.006019 |
0.3087 |
b0223 |
yafJ |
-7.05 |
0.351504 |
68 -- 78 |
1 -- 10 |
type 2 glutamine amidotransferase family protein |
|
_____________67__________79\n_____________|___________|\n5'-GCG...GCUGA________A__AUGCC...AAG-3'\n______________CGCGUCUU_UC\n______________||||||||_||\n______________GCGCAGAA_AG\n3'-UUU...UUUAC___________-5'\n_____________|__________|\n_____________11_________1\n |
69 -- 75 |
3 -- 9 |
-12.9748 kcal/mol |
4.76165 kcal/mol |
1.16635 kcal/mol |
67 79@LB@ | |@LB@5'-GCG...GCUGA A AUGCC...AAG-3'@LB@ CGCGUCUU UC@LB@ |||||||| ||@LB@ GCGCAGAA AG@LB@3'-UUU...UUUAC -5'@LB@ | |@LB@ 11 1@LB@@LB@@LB@Energy -7.05 kcal/mol@LB@Hybridization Energy -12.9748 kcal/mol@LB@Unfolding Energy - mRNA 4.76165 kcal/mol@LB@Unfolding Energy - sRNA 1.16635 kcal/mol@LB@@LB@Position - mRNA 68 -- 78@LB@Position - sRNA 1 -- 10@LB@Position Seed - mRNA 69 -- 75@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 86 |
0.008729 |
0.3104 |
b4213 |
cpdB |
-12.03 |
0.054140 |
68 -- 81 |
8 -- 21 |
2':3'-cyclic-nucleotide 2'-phosphodiesterase |
|
_____________67_____________82\n_____________|______________|\n5'-UGA...CUAUC_U____________CAACU...AUA-3'\n______________G_UAAUGAAUGCGC\n______________|_|||::|||||||\n______________C_AUUGUUUACGCG\n3'-UUU...UACUA_U____________CAGAAAG-5'\n_____________|______________|\n_____________22_____________7\n |
75 -- 81 |
8 -- 14 |
-15.4826 kcal/mol |
2.2212 kcal/mol |
1.23638 kcal/mol |
67 82@LB@ | |@LB@5'-UGA...CUAUC U CAACU...AUA-3'@LB@ G UAAUGAAUGCGC@LB@ | |||::|||||||@LB@ C AUUGUUUACGCG@LB@3'-UUU...UACUA U CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -12.03 kcal/mol@LB@Hybridization Energy -15.4826 kcal/mol@LB@Unfolding Energy - mRNA 2.2212 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 68 -- 81@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 8 -- 14@LB@ |
