19 |
0.0004167 |
0.0781 |
stm0475 |
acrB |
-19.12 |
0.024591 |
69 -- 114 |
139 -- 185 |
aminoglycoside/multidrug transporter permease |
|
_____________68_______________________115\n_____________|________________________|\n5'-AAG...GUCCU____C_____U_____________AAUUA...CGC-3'\n______________GGCG_ACAGG_UAAA_GUACAGGA\n______________|:|:_|||||_||||_||||||||\n______________CUGU_UGUCC_AUUU_CAUGUCCU\n3'-UUU...GAUAC____C_____C____A________UCACU...UCA-5'\n_____________|________________________|\n_____________186______________________138\n |
108 -- 114 |
139 -- 145 |
-25.274 kcal/mol |
6.90525 kcal/mol |
3.69132 kcal/mol |
68 115@LB@ | |@LB@5'-AAG...GUCCU C U AAUUA...CGC-3'@LB@ GGCG ACAGG UAAA GUACAGGA@LB@ |:|: ||||| |||| ||||||||@LB@ CUGU UGUCC AUUU CAUGUCCU@LB@3'-UUU...GAUAC C C A UCACU...UCA-5'@LB@ | |@LB@ 186 138@LB@@LB@@LB@Energy -19.12 kcal/mol@LB@Hybridization Energy -25.274 kcal/mol@LB@Unfolding Energy - mRNA 6.90525 kcal/mol@LB@Unfolding Energy - sRNA 3.69132 kcal/mol@LB@@LB@Position - mRNA 69 -- 114@LB@Position - sRNA 139 -- 185@LB@Position Seed - mRNA 108 -- 114@LB@Position Seed - sRNA 139 -- 145@LB@ |
86 |
0.004005 |
0.1596 |
stm1961 |
fliS |
-19.11 |
0.024619 |
1 -- 77 |
23 -- 90 |
flagellar export chaperone FliS |
|
______________1__________________________________________________________________________________78\n______________|__________________________________________________________________________________|\n___________5'-_______G_______UU____C________AA_____UGACAAAACAGUACCU_________C____________________CGUUG...AUG-3'\n______________GC__GCA_GACAACG__AACG_CAC_GCUG__AAGCC________________GUCCGUUAG_AACA_GCAU__CGAUGAAAC\n______________||__:||_:|||||:__|||:_|||_:|:|__|||||________________|:||:|:||_||||_||||__||||:||||\n______________CG__UGU_UUGUUGU__UUGU_GUG_UGGC__UUCGG________________CGGGUAGUC_UUGU_CGUA__GCUAUUUUG\n3'-UUU...GUUAA__UU___G_______G_____A___U____A______UUUU__________________________G____AG_________AAAAG...UCA-5'\n_____________|___________________________________________________________________________________|\n_____________91__________________________________________________________________________________22\n |
7 -- 13 |
76 -- 82 |
-54.7378 kcal/mol |
16.9215 kcal/mol |
25.0607 kcal/mol |
1 78@LB@ | |@LB@ 5'- G UU C AA UGACAAAACAGUACCU C CGUUG...AUG-3'@LB@ GC GCA GACAACG AACG CAC GCUG AAGCC GUCCGUUAG AACA GCAU CGAUGAAAC@LB@ || :|| :|||||: |||: ||| :|:| ||||| |:||:|:|| |||| |||| ||||:||||@LB@ CG UGU UUGUUGU UUGU GUG UGGC UUCGG CGGGUAGUC UUGU CGUA GCUAUUUUG@LB@3'-UUU...GUUAA UU G G A U A UUUU G AG AAAAG...UCA-5'@LB@ | |@LB@ 91 22@LB@@LB@@LB@Energy -19.11 kcal/mol@LB@Hybridization Energy -54.7378 kcal/mol@LB@Unfolding Energy - mRNA 16.9215 kcal/mol@LB@Unfolding Energy - sRNA 25.0607 kcal/mol@LB@@LB@Position - mRNA 1 -- 77@LB@Position - sRNA 23 -- 90@LB@Position Seed - mRNA 7 -- 13@LB@Position Seed - sRNA 76 -- 82@LB@ |
21 |
0.000482 |
0.08173 |
stm1057 |
pepN |
-18.92 |
0.026522 |
201 -- 244 |
36 -- 81 |
aminopeptidase N |
|
_____________200______________245\n_____________|________________|\n5'-CUU...UUUAU___________C____GCCAA...AAA-3'\n______________GACACAACAGC_ACAA\n______________:||||||||:|_||||\n______________UUGUGUUGUUG_UGUU\n3'-UUU...AACGU________________GUAGU...UCA-5'\n_____________|________________|\n_____________82_______________35\n |
207 -- 213 |
77 -- 83 |
-17.6161 kcal/mol |
1.99149 kcal/mol |
3.56182 kcal/mol |
200 245@LB@ | |@LB@5'-CUU...UUUAU C GCCAA...AAA-3'@LB@ GACACAACAGC ACAA@LB@ :||||||||:| ||||@LB@ UUGUGUUGUUG UGUU@LB@3'-UUU...AACGU GUAGU...UCA-5'@LB@ | |@LB@ 82 35@LB@@LB@@LB@Energy -18.92 kcal/mol@LB@Hybridization Energy -17.6161 kcal/mol@LB@Unfolding Energy - mRNA 1.99149 kcal/mol@LB@Unfolding Energy - sRNA 3.56182 kcal/mol@LB@@LB@Position - mRNA 201 -- 244@LB@Position - sRNA 36 -- 81@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 77 -- 83@LB@ |
191 |
0.01055 |
0.1967 |
stm0634 |
ybeF |
-18.83 |
0.027435 |
210 -- 262 |
35 -- 82 |
putative LysR family transcriptional regulator |
|
_____________209____________________________________________________________263\n_____________|______________________________________________________________|\n5'-GCU...CGUGA____UA_____C_G____AAAG_______________UCAACA____________AAC____AAUUU...UGU-3'\n______________GUGA__AUAAU_A_GCAG____ACAACCG___GCCGA______CCUA_CAGGACA___CGCA\n______________|::|__|:||:_|_:||:____|||||||___|||:|______||:|_|||:|||___||||\n______________CGUU__UGUUG_U_UGUU____UGUUGGC___CGGUU______GGGU_GUCUUGU___GCGU\n3'-UUU...GUUAA____UG_____U_G____GUAG_______AUU_____UUC_______A______________AAGGC...UCA-5'\n_____________|______________________________________________________________|\n_____________83_____________________________________________________________34\n |
227 -- 233 |
62 -- 68 |
-42.1612 kcal/mol |
9.04443 kcal/mol |
22.5095 kcal/mol |
209 263@LB@ | |@LB@5'-GCU...CGUGA UA C G AAAG UCAACA AAC AAUUU...UGU-3'@LB@ GUGA AUAAU A GCAG ACAACCG GCCGA CCUA CAGGACA CGCA@LB@ |::| |:||: | :||: ||||||| |||:| ||:| |||:||| ||||@LB@ CGUU UGUUG U UGUU UGUUGGC CGGUU GGGU GUCUUGU GCGU@LB@3'-UUU...GUUAA UG U G GUAG AUU UUC A AAGGC...UCA-5'@LB@ | |@LB@ 83 34@LB@@LB@@LB@Energy -18.83 kcal/mol@LB@Hybridization Energy -42.1612 kcal/mol@LB@Unfolding Energy - mRNA 9.04443 kcal/mol@LB@Unfolding Energy - sRNA 22.5095 kcal/mol@LB@@LB@Position - mRNA 210 -- 262@LB@Position - sRNA 35 -- 82@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 62 -- 68@LB@ |
99 |
0.004942 |
0.1728 |
stm0604 |
ybdM |
-18.77 |
0.028138 |
203 -- 249 |
36 -- 81 |
similar to E. coli orf hypothetical protein (AAC73702.1); Blastp hit to AAC73702.1 (209 aa) 77% identity in aa 5 - 209 |
|
_____________202___________________250\n_____________|_____________________|\n5'-AAA...CUUAU______C______________AAAUA...AUA-3'\n______________GCAACA_CGAC_UCACAACCG\n______________:|||||_|:||_|||||||||\n______________UGUUGU_GUUG_AGUGUUGGC\n3'-UUU...UGUGU___________U_________AUUCG...UCA-5'\n_____________|_____________________|\n_____________82____________________35\n |
216 -- 222 |
62 -- 68 |
-25.0091 kcal/mol |
1.37283 kcal/mol |
7.72388 kcal/mol |
202 250@LB@ | |@LB@5'-AAA...CUUAU C AAAUA...AUA-3'@LB@ GCAACA CGAC UCACAACCG@LB@ :||||| |:|| |||||||||@LB@ UGUUGU GUUG AGUGUUGGC@LB@3'-UUU...UGUGU U AUUCG...UCA-5'@LB@ | |@LB@ 82 35@LB@@LB@@LB@Energy -18.77 kcal/mol@LB@Hybridization Energy -25.0091 kcal/mol@LB@Unfolding Energy - mRNA 1.37283 kcal/mol@LB@Unfolding Energy - sRNA 7.72388 kcal/mol@LB@@LB@Position - mRNA 203 -- 249@LB@Position - sRNA 36 -- 81@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 62 -- 68@LB@ |
139 |
0.007115 |
0.182 |
stm0826 |
ybiN |
-18.61 |
0.029895 |
232 -- 282 |
36 -- 90 |
23S rRNA (adenine(1618)-N(6))-methyltransferase |
|
_____________231___________________283\n_____________|_____________________|\n5'-CUC...GAGCC_____AACGAGCG________AAUUC...UUC-3'\n______________GAUCA________AGGCAGGG\n______________:||||________||:|||||\n______________UUAGU________UCUGUCCC\n3'-UUU...UGUAA_____GAUACCUG________AUUUA...UCA-5'\n_____________|_____________________|\n_____________91____________________35\n |
124 -- 130 |
152 -- 158 |
-17.5433 kcal/mol |
4.82059 kcal/mol |
3.53427 kcal/mol |
231 283@LB@ | |@LB@5'-CUC...GAGCC AACGAGCG AAUUC...UUC-3'@LB@ GAUCA AGGCAGGG@LB@ :|||| ||:|||||@LB@ UUAGU UCUGUCCC@LB@3'-UUU...UGUAA GAUACCUG AUUUA...UCA-5'@LB@ | |@LB@ 91 35@LB@@LB@@LB@Energy -18.61 kcal/mol@LB@Hybridization Energy -17.5433 kcal/mol@LB@Unfolding Energy - mRNA 4.82059 kcal/mol@LB@Unfolding Energy - sRNA 3.53427 kcal/mol@LB@@LB@Position - mRNA 232 -- 282@LB@Position - sRNA 36 -- 90@LB@Position Seed - mRNA 124 -- 130@LB@Position Seed - sRNA 152 -- 158@LB@ |
128 |
0.006467 |
0.1774 |
stm3907 |
N/A |
-18.55 |
0.030594 |
118 -- 173 |
37 -- 89 |
|
|
_____________117__________________________174\n_____________|____________________________|\n5'-UCA...AAAAA____________ACCAGU______G___AAAAC...UUU-3'\n______________CAGACGCAACAA______CAGCAU_AUA\n______________||:||:||||||______||:|||_|:|\n______________GUUUGUGUUGUU______GUUGUA_UGU\n3'-UUU...UUAAC____________GU__________G___UGGCA...UCA-5'\n_____________|____________________________|\n_____________90___________________________36\n |
123 -- 129 |
78 -- 84 |
-22.8944 kcal/mol |
3.16008 kcal/mol |
6.30461 kcal/mol |
117 174@LB@ | |@LB@5'-UCA...AAAAA ACCAGU G AAAAC...UUU-3'@LB@ CAGACGCAACAA CAGCAU AUA@LB@ ||:||:|||||| ||:||| |:|@LB@ GUUUGUGUUGUU GUUGUA UGU@LB@3'-UUU...UUAAC GU G UGGCA...UCA-5'@LB@ | |@LB@ 90 36@LB@@LB@@LB@Energy -18.55 kcal/mol@LB@Hybridization Energy -22.8944 kcal/mol@LB@Unfolding Energy - mRNA 3.16008 kcal/mol@LB@Unfolding Energy - sRNA 6.30461 kcal/mol@LB@@LB@Position - mRNA 118 -- 173@LB@Position - sRNA 37 -- 89@LB@Position Seed - mRNA 123 -- 129@LB@Position Seed - sRNA 78 -- 84@LB@ |
124 |
0.006123 |
0.1758 |
stm0794 |
bioB |
-18.46 |
0.031660 |
1 -- 37 |
38 -- 79 |
biotin synthase |
|
______________1________________38\n______________|________________|\n___________5'-_________________UUCGG...AGC-3'\n______________AAC_CAGC_UCGCAGCC\n______________|||_||:|_||:||:||\n______________UUG_GUUG_AGUGUUGG\n3'-UUU...UGUUG___U____U________CAUUC...UCA-5'\n_____________|_________________|\n_____________80________________37\n |
9 -- 15 |
63 -- 69 |
-17.7754 kcal/mol |
2.27351 kcal/mol |
6.48115 kcal/mol |
1 38@LB@ | |@LB@ 5'- UUCGG...AGC-3'@LB@ AAC CAGC UCGCAGCC@LB@ ||| ||:| ||:||:||@LB@ UUG GUUG AGUGUUGG@LB@3'-UUU...UGUUG U U CAUUC...UCA-5'@LB@ | |@LB@ 80 37@LB@@LB@@LB@Energy -18.46 kcal/mol@LB@Hybridization Energy -17.7754 kcal/mol@LB@Unfolding Energy - mRNA 2.27351 kcal/mol@LB@Unfolding Energy - sRNA 6.48115 kcal/mol@LB@@LB@Position - mRNA 1 -- 37@LB@Position - sRNA 38 -- 79@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 63 -- 69@LB@ |
81 |
0.003764 |
0.1596 |
stm0121 |
ftsL |
-18.45 |
0.031843 |
91 -- 225 |
48 -- 186 |
cell division protein FtsL |
|
_____________90__________________226\n_____________|___________________|\n5'-CGU...UGCCG__________A________GAAAA...UGC-3'\n______________GGUGAAAAAG_GGUAG_CU\n______________:|||||||||_|||||_||\n______________UCACUUUUUC_CCAUC_GA\n3'-UUU...GUCCU________________A__GCGAU...UCA-5'\n_____________|___________________|\n_____________187_________________47\n |
133 -- 139 |
129 -- 135 |
-20.6582 kcal/mol |
4.19087 kcal/mol |
6.37024 kcal/mol |
90 226@LB@ | |@LB@5'-CGU...UGCCG A GAAAA...UGC-3'@LB@ GGUGAAAAAG GGUAG CU@LB@ :||||||||| ||||| ||@LB@ UCACUUUUUC CCAUC GA@LB@3'-UUU...GUCCU A GCGAU...UCA-5'@LB@ | |@LB@ 187 47@LB@@LB@@LB@Energy -18.45 kcal/mol@LB@Hybridization Energy -20.6582 kcal/mol@LB@Unfolding Energy - mRNA 4.19087 kcal/mol@LB@Unfolding Energy - sRNA 6.37024 kcal/mol@LB@@LB@Position - mRNA 91 -- 225@LB@Position - sRNA 48 -- 186@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 129 -- 135@LB@ |
183 |
0.01015 |
0.1966 |
stm0813 |
ybhP |
-18.40 |
0.032407 |
2 -- 54 |
36 -- 90 |
similar to E. coli orf hypothetical protein (AAC73877.1); Blastp hit to AAC73877.1 (253 aa) 86% identity in aa 1 - 253 |
|
_____________1____________________________________55\n_____________|____________________________________|\n__________5'-A____________UA__CU__CA______________GGUUG...UGC-3'\n______________GUAAAUGCAACA__AU__GC___ACAACCG_AGGCC\n______________|:|||::|||||__|:__:|___|||||||_|:|||\n______________CGUUUGUGUUGU__UG__UG___UGUUGGC_UUCGG\n3'-UUU...GUUAA____________UG__U___UAG_______A_____UUUUC...UCA-5'\n_____________|____________________________________|\n_____________91___________________________________35\n |
24 -- 30 |
62 -- 68 |
-32.6929 kcal/mol |
6.87264 kcal/mol |
11.8287 kcal/mol |
1 55@LB@ | |@LB@ 5'-A UA CU CA GGUUG...UGC-3'@LB@ GUAAAUGCAACA AU GC ACAACCG AGGCC@LB@ |:|||::||||| |: :| ||||||| |:|||@LB@ CGUUUGUGUUGU UG UG UGUUGGC UUCGG@LB@3'-UUU...GUUAA UG U UAG A UUUUC...UCA-5'@LB@ | |@LB@ 91 35@LB@@LB@@LB@Energy -18.40 kcal/mol@LB@Hybridization Energy -32.6929 kcal/mol@LB@Unfolding Energy - mRNA 6.87264 kcal/mol@LB@Unfolding Energy - sRNA 11.8287 kcal/mol@LB@@LB@Position - mRNA 2 -- 54@LB@Position - sRNA 36 -- 90@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 62 -- 68@LB@ |