| 114 |
0.006011 |
0.1855 |
b0422 |
xseB |
-10.73 |
0.101337 |
104 -- 119 |
73 -- 87 |
exonuclease VII small subunit |
|
_____________103______________120\n_____________|________________|\n5'-CAA...CGCUU________A__U____UUACC...AAG-3'\n______________UGCUGUGC_CA_CACC\n______________|:|||:||_||_||||\n______________AUGACGCG_GU_GUGG\n3'-UUU...CGCUU___________U____UCCCU...GUG-5'\n_____________|________________|\n_____________88_______________72\n |
105 -- 111 |
80 -- 86 |
-20.3088 kcal/mol |
2.628 kcal/mol |
6.95602 kcal/mol |
103 120@LB@ | |@LB@5'-CAA...CGCUU A U UUACC...AAG-3'@LB@ UGCUGUGC CA CACC@LB@ |:|||:|| || ||||@LB@ AUGACGCG GU GUGG@LB@3'-UUU...CGCUU U UCCCU...GUG-5'@LB@ | |@LB@ 88 72@LB@@LB@@LB@Energy -10.73 kcal/mol@LB@Hybridization Energy -20.3088 kcal/mol@LB@Unfolding Energy - mRNA 2.628 kcal/mol@LB@Unfolding Energy - sRNA 6.95602 kcal/mol@LB@@LB@Position - mRNA 104 -- 119@LB@Position - sRNA 73 -- 87@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 24 |
0.001457 |
0.1727 |
b0424 |
yajL |
-16.26 |
0.008266 |
79 -- 97 |
64 -- 86 |
oxidative-stress-resistance chaperone |
|
_____________78______________________98\n_____________|_______________________|\n5'-AGA...CGCGC_______________________GACUA...CCA-3'\n______________GCUGCGCCA_CACU___GAAAUC\n______________:||||||||_|||:___||||||\n______________UGACGCGGU_GUGG___CUUUAG\n3'-UUU...GCUUA_________U____UCC______AACCG...GUG-5'\n_____________|_______________________|\n_____________87______________________63\n |
81 -- 87 |
78 -- 84 |
-26.9283 kcal/mol |
3.28429 kcal/mol |
7.38435 kcal/mol |
78 98@LB@ | |@LB@5'-AGA...CGCGC GACUA...CCA-3'@LB@ GCUGCGCCA CACU GAAAUC@LB@ :|||||||| |||: ||||||@LB@ UGACGCGGU GUGG CUUUAG@LB@3'-UUU...GCUUA U UCC AACCG...GUG-5'@LB@ | |@LB@ 87 63@LB@@LB@@LB@Energy -16.26 kcal/mol@LB@Hybridization Energy -26.9283 kcal/mol@LB@Unfolding Energy - mRNA 3.28429 kcal/mol@LB@Unfolding Energy - sRNA 7.38435 kcal/mol@LB@@LB@Position - mRNA 79 -- 97@LB@Position - sRNA 64 -- 86@LB@Position Seed - mRNA 81 -- 87@LB@Position Seed - sRNA 78 -- 84@LB@ |
| 200 |
0.01246 |
0.2193 |
b0425 |
panE |
-12.07 |
0.055655 |
285 -- 293 |
54 -- 62 |
2-dehydropantoate reductase NADPH-specific |
|
_____________284_______294\n_____________|_________|\n5'-AUC...AGGGC_________GUACCGC-3'\n______________UGGCUGCGC\n______________|||||||||\n______________ACCGACGCG\n3'-UUU...UUAGA_________GCAUU...GUG-5'\n_____________|_________|\n_____________63________53\n |
287 -- 293 |
54 -- 60 |
-19.0333 kcal/mol |
2.09185 kcal/mol |
4.8739 kcal/mol |
284 294@LB@ | |@LB@5'-AUC...AGGGC GUACCGC-3'@LB@ UGGCUGCGC@LB@ |||||||||@LB@ ACCGACGCG@LB@3'-UUU...UUAGA GCAUU...GUG-5'@LB@ | |@LB@ 63 53@LB@@LB@@LB@Energy -12.07 kcal/mol@LB@Hybridization Energy -19.0333 kcal/mol@LB@Unfolding Energy - mRNA 2.09185 kcal/mol@LB@Unfolding Energy - sRNA 4.8739 kcal/mol@LB@@LB@Position - mRNA 285 -- 293@LB@Position - sRNA 54 -- 62@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 58 |
0.002925 |
0.1727 |
b0427 |
yajR |
-11.14 |
0.084219 |
218 -- 238 |
54 -- 78 |
putative transporter |
|
_____________217________________________239\n_____________|__________________________|\n5'-CGU...AAAAU_________U________________GACCU...CGG-3'\n______________GACGCCAGG_GAGA____GGC_GCGC\n______________:||:|||||_||:|____|||_||||\n______________UUGUGGUCC_CUUU____CCG_CGCG\n3'-UUU...CGCGG______________AGAA___A____GCAUU...GUG-5'\n_____________|__________________________|\n_____________79_________________________53\n |
220 -- 226 |
70 -- 76 |
-28.7218 kcal/mol |
8.65047 kcal/mol |
8.92888 kcal/mol |
217 239@LB@ | |@LB@5'-CGU...AAAAU U GACCU...CGG-3'@LB@ GACGCCAGG GAGA GGC GCGC@LB@ :||:||||| ||:| ||| ||||@LB@ UUGUGGUCC CUUU CCG CGCG@LB@3'-UUU...CGCGG AGAA A GCAUU...GUG-5'@LB@ | |@LB@ 79 53@LB@@LB@@LB@Energy -11.14 kcal/mol@LB@Hybridization Energy -28.7218 kcal/mol@LB@Unfolding Energy - mRNA 8.65047 kcal/mol@LB@Unfolding Energy - sRNA 8.92888 kcal/mol@LB@@LB@Position - mRNA 218 -- 238@LB@Position - sRNA 54 -- 78@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 150 |
0.008837 |
0.2059 |
b0453 |
ybaY |
-11.57 |
0.069675 |
268 -- 294 |
71 -- 94 |
outer membrane lipoprotein |
|
_____________267_________________________295\n_____________|___________________________|\n5'-AAG...UAAAA___________CA_A____________CUGCAA-3'\n______________GCGCGGAUAUU__G_CGCCAGCACCGG\n______________|||||:|||:|__|_|||||:||||:|\n______________CGCGCUUAUGA__C_GCGGUUGUGGUC\n3'-UUU...CCCCA___________________________CCUUU...GUG-5'\n_____________|___________________________|\n_____________95__________________________70\n |
283 -- 289 |
76 -- 82 |
-36.9875 kcal/mol |
12.3701 kcal/mol |
13.0144 kcal/mol |
267 295@LB@ | |@LB@5'-AAG...UAAAA CA A CUGCAA-3'@LB@ GCGCGGAUAUU G CGCCAGCACCGG@LB@ |||||:|||:| | |||||:||||:|@LB@ CGCGCUUAUGA C GCGGUUGUGGUC@LB@3'-UUU...CCCCA CCUUU...GUG-5'@LB@ | |@LB@ 95 70@LB@@LB@@LB@Energy -11.57 kcal/mol@LB@Hybridization Energy -36.9875 kcal/mol@LB@Unfolding Energy - mRNA 12.3701 kcal/mol@LB@Unfolding Energy - sRNA 13.0144 kcal/mol@LB@@LB@Position - mRNA 268 -- 294@LB@Position - sRNA 71 -- 94@LB@Position Seed - mRNA 283 -- 289@LB@Position Seed - sRNA 76 -- 82@LB@ |
| 87 |
0.004792 |
0.1855 |
b0476 |
aes |
-9.71 |
0.157345 |
34 -- 55 |
56 -- 76 |
acetyl esterase |
|
_____________33______________________56\n_____________|_______________________|\n5'-CGU...ACGUU______________CA_______UUUUA...CAA-3'\n______________UACC_GGGAAAUUU__UGGUUGU\n______________:|||_|||||||:|__|||:||:\n______________GUGG_CCCUUUAGA__ACCGACG\n3'-UUU...CGGUU____U__________________CGGCA...GUG-5'\n_____________|_______________________|\n_____________77______________________55\n |
49 -- 55 |
56 -- 62 |
-24.1621 kcal/mol |
6.04137 kcal/mol |
8.40711 kcal/mol |
33 56@LB@ | |@LB@5'-CGU...ACGUU CA UUUUA...CAA-3'@LB@ UACC GGGAAAUUU UGGUUGU@LB@ :||| |||||||:| |||:||:@LB@ GUGG CCCUUUAGA ACCGACG@LB@3'-UUU...CGGUU U CGGCA...GUG-5'@LB@ | |@LB@ 77 55@LB@@LB@@LB@Energy -9.71 kcal/mol@LB@Hybridization Energy -24.1621 kcal/mol@LB@Unfolding Energy - mRNA 6.04137 kcal/mol@LB@Unfolding Energy - sRNA 8.40711 kcal/mol@LB@@LB@Position - mRNA 34 -- 55@LB@Position - sRNA 56 -- 76@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 197 |
0.01211 |
0.2164 |
b0495 |
ybbA |
-7.53 |
0.379415 |
88 -- 97 |
1 -- 10 |
putative ABC transporter ATPase |
|
_____________87_________98\n_____________|__________|\n5'-GCC...CAGGC__________UGGCA...UCA-3'\n______________CAGGCCGCGC\n______________||||||||:|\n______________GUCCGGCGUG\n3'-UUU...AAAAA__________-5'\n_____________|_________|\n_____________11________1\n |
91 -- 97 |
1 -- 7 |
-21.6304 kcal/mol |
8.71663 kcal/mol |
5.44172 kcal/mol |
87 98@LB@ | |@LB@5'-GCC...CAGGC UGGCA...UCA-3'@LB@ CAGGCCGCGC@LB@ ||||||||:|@LB@ GUCCGGCGUG@LB@3'-UUU...AAAAA -5'@LB@ | |@LB@ 11 1@LB@@LB@@LB@Energy -7.53 kcal/mol@LB@Hybridization Energy -21.6304 kcal/mol@LB@Unfolding Energy - mRNA 8.71663 kcal/mol@LB@Unfolding Energy - sRNA 5.44172 kcal/mol@LB@@LB@Position - mRNA 88 -- 97@LB@Position - sRNA 1 -- 10@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 84 |
0.004676 |
0.1855 |
b0526 |
cysS |
-14.43 |
0.019007 |
256 -- 269 |
64 -- 77 |
cysteinyl-tRNA synthetase |
|
_____________255____________270\n_____________|______________|\n5'-GCC...UAUUC______________GGCAU...ACG-3'\n______________ACGCCGGGGAAGUC\n______________||:||:|||||:||\n______________UGUGGUCCCUUUAG\n3'-UUU...GCGGU______________AACCG...GUG-5'\n_____________|______________|\n_____________78_____________63\n |
263 -- 269 |
64 -- 70 |
-23.2043 kcal/mol |
4.03864 kcal/mol |
4.72709 kcal/mol |
255 270@LB@ | |@LB@5'-GCC...UAUUC GGCAU...ACG-3'@LB@ ACGCCGGGGAAGUC@LB@ ||:||:|||||:||@LB@ UGUGGUCCCUUUAG@LB@3'-UUU...GCGGU AACCG...GUG-5'@LB@ | |@LB@ 78 63@LB@@LB@@LB@Energy -14.43 kcal/mol@LB@Hybridization Energy -23.2043 kcal/mol@LB@Unfolding Energy - mRNA 4.03864 kcal/mol@LB@Unfolding Energy - sRNA 4.72709 kcal/mol@LB@@LB@Position - mRNA 256 -- 269@LB@Position - sRNA 64 -- 77@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 64 -- 70@LB@ |
| 17 |
0.0008046 |
0.1666 |
b0590 |
fepD |
-14.87 |
0.015550 |
17 -- 43 |
70 -- 94 |
ferrienterobactin ABC transporter permease |
|
_____________16__________________________44\n_____________|___________________________|\n5'-AAU...AACGA___AG___________GA_________UGCGU...AAU-3'\n______________GCG__GAAUACUGCGC__AACGCCGGG\n______________|||__|||||||||||__|||:||:||\n______________CGC__CUUAUGACGCG__UUGUGGUCC\n3'-UUU...CCCCA___G____________G__________CUUUA...GUG-5'\n_____________|___________________________|\n_____________95__________________________69\n |
37 -- 43 |
70 -- 76 |
-38.1858 kcal/mol |
10.2318 kcal/mol |
13.036 kcal/mol |
16 44@LB@ | |@LB@5'-AAU...AACGA AG GA UGCGU...AAU-3'@LB@ GCG GAAUACUGCGC AACGCCGGG@LB@ ||| ||||||||||| |||:||:||@LB@ CGC CUUAUGACGCG UUGUGGUCC@LB@3'-UUU...CCCCA G G CUUUA...GUG-5'@LB@ | |@LB@ 95 69@LB@@LB@@LB@Energy -14.87 kcal/mol@LB@Hybridization Energy -38.1858 kcal/mol@LB@Unfolding Energy - mRNA 10.2318 kcal/mol@LB@Unfolding Energy - sRNA 13.036 kcal/mol@LB@@LB@Position - mRNA 17 -- 43@LB@Position - sRNA 70 -- 94@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 28 |
0.001577 |
0.1727 |
b0598 |
cstA |
-11.00 |
0.089647 |
31 -- 48 |
28 -- 45 |
carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
|
_____________30__________________49\n_____________|___________________|\n5'-GUA...ACAGA___________A_______AAAAC...ACG-3'\n______________AUUA_GAUGAG_UUGCAGG\n______________||||_||||||_||:||:|\n______________UAAU_CUACUC_AAUGUUC\n3'-UUU...UUUAA____A______________CCGUG...GUG-5'\n_____________|___________________|\n_____________46__________________27\n |
42 -- 48 |
28 -- 34 |
-16.2081 kcal/mol |
3.25033 kcal/mol |
1.95571 kcal/mol |
30 49@LB@ | |@LB@5'-GUA...ACAGA A AAAAC...ACG-3'@LB@ AUUA GAUGAG UUGCAGG@LB@ |||| |||||| ||:||:|@LB@ UAAU CUACUC AAUGUUC@LB@3'-UUU...UUUAA A CCGUG...GUG-5'@LB@ | |@LB@ 46 27@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -16.2081 kcal/mol@LB@Unfolding Energy - mRNA 3.25033 kcal/mol@LB@Unfolding Energy - sRNA 1.95571 kcal/mol@LB@@LB@Position - mRNA 31 -- 48@LB@Position - sRNA 28 -- 45@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 28 -- 34@LB@ |
