| 82 |
0.003783 |
0.1596 |
stm0710 |
ybgH |
-19.90 |
0.018103 |
103 -- 151 |
33 -- 90 |
MFS transporter |
|
_____________102__________________152\n_____________|____________________|\n5'-GCG...UUUAA_G__________________GGCUU...UUC-3'\n______________G_AAACACGGCGAUACGGCA\n______________|_||||||::|:|:||::||\n______________C_UUUGUGUUGUUGUGUUGU\n3'-UUU...GUUAA_G__________________AGUGU...UCA-5'\n_____________|____________________|\n_____________91___________________32\n |
116 -- 122 |
71 -- 77 |
-24.8461 kcal/mol |
5.94354 kcal/mol |
3.80671 kcal/mol |
102 152@LB@ | |@LB@5'-GCG...UUUAA G GGCUU...UUC-3'@LB@ G AAACACGGCGAUACGGCA@LB@ | ||||||::|:|:||::||@LB@ C UUUGUGUUGUUGUGUUGU@LB@3'-UUU...GUUAA G AGUGU...UCA-5'@LB@ | |@LB@ 91 32@LB@@LB@@LB@Energy -19.90 kcal/mol@LB@Hybridization Energy -24.8461 kcal/mol@LB@Unfolding Energy - mRNA 5.94354 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 103 -- 151@LB@Position - sRNA 33 -- 90@LB@Position Seed - mRNA 116 -- 122@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 100 |
0.00495 |
0.1728 |
stm1879 |
ptrB |
-19.83 |
0.018631 |
144 -- 223 |
40 -- 120 |
oligopeptidase B |
|
_____________143____________________________________________224\n_____________|______________________________________________|\n5'-AAG...UAUAA_________________AAGAAAAA_____A___U___________AAUCG...AGC-3'\n______________CAAAUAU__UAACGCAA________ACGAC_UGU__GCCAAAAGCC\n______________||||:|:__:|||:|||________||:||_:||__||||||||||\n______________GUUUGUG__GUUGUGUU________UGUUG_GCA__CGGUUUUCGG\n3'-UUU...UUAAC_______UU________GUAG_____________UU__________GUAGU...UCA-5'\n_____________|______________________________________________|\n_____________121____________________________________________39\n |
209 -- 215 |
49 -- 55 |
-34.4525 kcal/mol |
3.62291 kcal/mol |
15.2208 kcal/mol |
143 224@LB@ | |@LB@5'-AAG...UAUAA AAGAAAAA A U AAUCG...AGC-3'@LB@ CAAAUAU UAACGCAA ACGAC UGU GCCAAAAGCC@LB@ ||||:|: :|||:||| ||:|| :|| ||||||||||@LB@ GUUUGUG GUUGUGUU UGUUG GCA CGGUUUUCGG@LB@3'-UUU...UUAAC UU GUAG UU GUAGU...UCA-5'@LB@ | |@LB@ 121 39@LB@@LB@@LB@Energy -19.83 kcal/mol@LB@Hybridization Energy -34.4525 kcal/mol@LB@Unfolding Energy - mRNA 3.62291 kcal/mol@LB@Unfolding Energy - sRNA 15.2208 kcal/mol@LB@@LB@Position - mRNA 144 -- 223@LB@Position - sRNA 40 -- 120@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 9 |
0.0001316 |
0.05206 |
stm1221 |
cobB |
-19.79 |
0.018892 |
28 -- 73 |
51 -- 101 |
NAD-dependent protein deacylase |
|
_____________27__________________74\n_____________|___________________|\n5'-UCG...UUACG___________________UGGCG...UGG-3'\n______________GCA___AUAACAACGCAAC\n______________|||___|:||||||:||||\n______________CGU___UGUUGUUGUGUUG\n3'-UUU...GUUAA___UUG_____________UAGUG...UCA-5'\n_____________|___________________|\n_____________102_________________50\n |
57 -- 63 |
72 -- 78 |
-19.3364 kcal/mol |
2.6852 kcal/mol |
3.80362 kcal/mol |
27 74@LB@ | |@LB@5'-UCG...UUACG UGGCG...UGG-3'@LB@ GCA AUAACAACGCAAC@LB@ ||| |:||||||:||||@LB@ CGU UGUUGUUGUGUUG@LB@3'-UUU...GUUAA UUG UAGUG...UCA-5'@LB@ | |@LB@ 102 50@LB@@LB@@LB@Energy -19.79 kcal/mol@LB@Hybridization Energy -19.3364 kcal/mol@LB@Unfolding Energy - mRNA 2.6852 kcal/mol@LB@Unfolding Energy - sRNA 3.80362 kcal/mol@LB@@LB@Position - mRNA 28 -- 73@LB@Position - sRNA 51 -- 101@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 74 |
0.003449 |
0.1596 |
stm1129 |
N/A |
-19.64 |
0.020096 |
190 -- 238 |
139 -- 186 |
N-acetylmannosamine-6-phosphate 2-epimerase |
stm3337 |
_____________189__________________________________239\n_____________|____________________________________|\n5'-AUA...UGGAU________UAGC_____U__AACA_________C__AAACG...AAA-3'\n______________GUCACUAU____CAGGC_GG____AAGUGUACA_GA\n______________:|||||||____|||:|_||____||:||||||_||\n______________UAGUGAUA____GUCUG_CC____UUUACAUGU_CU\n3'-UUU...GUAAU________CCU______U__CA___________C__UCACU...UCA-5'\n_____________|____________________________________|\n_____________187__________________________________138\n |
229 -- 235 |
142 -- 148 |
-26.4502 kcal/mol |
8.56913 kcal/mol |
5.67007 kcal/mol |
189 239@LB@ | |@LB@5'-AUA...UGGAU UAGC U AACA C AAACG...AAA-3'@LB@ GUCACUAU CAGGC GG AAGUGUACA GA@LB@ :||||||| |||:| || ||:|||||| ||@LB@ UAGUGAUA GUCUG CC UUUACAUGU CU@LB@3'-UUU...GUAAU CCU U CA C UCACU...UCA-5'@LB@ | |@LB@ 187 138@LB@@LB@@LB@Energy -19.64 kcal/mol@LB@Hybridization Energy -26.4502 kcal/mol@LB@Unfolding Energy - mRNA 8.56913 kcal/mol@LB@Unfolding Energy - sRNA 5.67007 kcal/mol@LB@@LB@Position - mRNA 190 -- 238@LB@Position - sRNA 139 -- 186@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 142 -- 148@LB@ |
| 141 |
0.007251 |
0.182 |
stm2325 |
nuoE |
-19.46 |
0.021521 |
159 -- 233 |
56 -- 129 |
NADH-quinone oxidoreductase subunit E |
|
_____________158_____________________________________________________________________________234\n_____________|_______________________________________________________________________________|\n5'-AUG...UAUCU_______A___AUU____UAU___A_____________CUAAUUAU______G_________AC___A___________UUUGA...GUG-3'\n______________GGGUAGU_UCG___UUGU___GUC_GA__UGUGGACCG________GCACGA_AAU_CAACA__CAC_AACCG_AGGCU\n______________|||||||_|||___::||___|||_||__:|::||||:________:|||:|_||:_|||||__|||_|||||_|:||:\n______________CCCAUCA_AGC___GGCA___CAG_CU__GCGUCUGGU________UGUGUU_UUG_GUUGU__GUG_UUGGC_UUCGG\n3'-UUU...UUUUU_______G___GAU____C_____A__UA_________UAACGUU_______G___U_____A__________A_____UUUUC...UCA-5'\n_____________|_______________________________________________________________________________|\n_____________130_____________________________________________________________________________55\n |
159 -- 165 |
123 -- 129 |
-58.9967 kcal/mol |
15.8863 kcal/mol |
27.1281 kcal/mol |
158 234@LB@ | |@LB@5'-AUG...UAUCU A AUU UAU A CUAAUUAU G AC A UUUGA...GUG-3'@LB@ GGGUAGU UCG UUGU GUC GA UGUGGACCG GCACGA AAU CAACA CAC AACCG AGGCU@LB@ ||||||| ||| ::|| ||| || :|::||||: :|||:| ||: ||||| ||| ||||| |:||:@LB@ CCCAUCA AGC GGCA CAG CU GCGUCUGGU UGUGUU UUG GUUGU GUG UUGGC UUCGG@LB@3'-UUU...UUUUU G GAU C A UA UAACGUU G U A A UUUUC...UCA-5'@LB@ | |@LB@ 130 55@LB@@LB@@LB@Energy -19.46 kcal/mol@LB@Hybridization Energy -58.9967 kcal/mol@LB@Unfolding Energy - mRNA 15.8863 kcal/mol@LB@Unfolding Energy - sRNA 27.1281 kcal/mol@LB@@LB@Position - mRNA 159 -- 233@LB@Position - sRNA 56 -- 129@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 123 -- 129@LB@ |
| 92 |
0.004229 |
0.1596 |
stm0669 |
phoL |
-19.39 |
0.022083 |
221 -- 286 |
36 -- 89 |
putative phosphate starvation-inducible protein ATP-binding |
|
_____________220__________________________________________________________________287\n_____________|____________________________________________________________________|\n5'-AAA...CGAUA_________G__GAACAGUUUGAAUAUA____C______AAUUAC___UU____________CA____CCGUC...GCC-3'\n______________CAGACACAA_AG________________GACA_UCGCGA_______CC__GAGCCCG_CAGA__ACGC\n______________||:||||||_|:________________:|||_||:|:|_______||__:|||||:_||||__||||\n______________GUUUGUGUU_UU________________UUGU_AGUGUU_______GG__UUCGGGU_GUCU__UGCG\n3'-UUU...UUAAC_________G__GUG________________________GGCAUUC__UU_______A____UG____UAAGG...UCA-5'\n_____________|____________________________________________________________________|\n_____________90___________________________________________________________________35\n |
270 -- 276 |
47 -- 53 |
-43.5648 kcal/mol |
9.30805 kcal/mol |
22.4875 kcal/mol |
220 287@LB@ | |@LB@5'-AAA...CGAUA G GAACAGUUUGAAUAUA C AAUUAC UU CA CCGUC...GCC-3'@LB@ CAGACACAA AG GACA UCGCGA CC GAGCCCG CAGA ACGC@LB@ ||:|||||| |: :||| ||:|:| || :|||||: |||| ||||@LB@ GUUUGUGUU UU UUGU AGUGUU GG UUCGGGU GUCU UGCG@LB@3'-UUU...UUAAC G GUG GGCAUUC UU A UG UAAGG...UCA-5'@LB@ | |@LB@ 90 35@LB@@LB@@LB@Energy -19.39 kcal/mol@LB@Hybridization Energy -43.5648 kcal/mol@LB@Unfolding Energy - mRNA 9.30805 kcal/mol@LB@Unfolding Energy - sRNA 22.4875 kcal/mol@LB@@LB@Position - mRNA 221 -- 286@LB@Position - sRNA 36 -- 89@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 57 |
0.002298 |
0.14 |
stm3921 |
wecC |
-19.39 |
0.022107 |
89 -- 132 |
46 -- 91 |
UDP-N-acetyl-D-mannosamine dehydrogenase |
|
_____________88_____________________________________133\n_____________|______________________________________|\n5'-ACC...GCGUC___U__________AAAUG____________A______GCGCC...AUA-3'\n______________UGC__GCACGACGA_____AAUAUCA_AACC_UGAGCC\n______________|||__:|||:||:|_____||:||||_||||_|:||||\n______________ACG__UGUGUUGUU_____UUGUAGU_UUGG_AUUCGG\n3'-UUU...GGUUA___UU_________GUG_________G____C______UUUUC...UCA-5'\n_____________|______________________________________|\n_____________92_____________________________________45\n |
107 -- 113 |
68 -- 74 |
-32.9193 kcal/mol |
8.51619 kcal/mol |
11.8308 kcal/mol |
88 133@LB@ | |@LB@5'-ACC...GCGUC U AAAUG A GCGCC...AUA-3'@LB@ UGC GCACGACGA AAUAUCA AACC UGAGCC@LB@ ||| :|||:||:| ||:|||| |||| |:||||@LB@ ACG UGUGUUGUU UUGUAGU UUGG AUUCGG@LB@3'-UUU...GGUUA UU GUG G C UUUUC...UCA-5'@LB@ | |@LB@ 92 45@LB@@LB@@LB@Energy -19.39 kcal/mol@LB@Hybridization Energy -32.9193 kcal/mol@LB@Unfolding Energy - mRNA 8.51619 kcal/mol@LB@Unfolding Energy - sRNA 11.8308 kcal/mol@LB@@LB@Position - mRNA 89 -- 132@LB@Position - sRNA 46 -- 91@LB@Position Seed - mRNA 107 -- 113@LB@Position Seed - sRNA 68 -- 74@LB@ |
| 117 |
0.005749 |
0.1738 |
stm2562 |
yfhA |
-19.31 |
0.022783 |
16 -- 66 |
47 -- 100 |
two-component system response regulator GlrR |
|
_____________15____________67\n_____________|_____________|\n5'-CUG...AGGCC_____________UCGAU...UCG-3'\n______________UUGCAAACGCAGC\n______________||||||||:||:|\n______________AACGUUUGUGUUG\n3'-UUU...UGGUU_____________UUGUG...UCA-5'\n_____________|_____________|\n_____________101___________46\n |
28 -- 34 |
80 -- 86 |
-18.759 kcal/mol |
3.6583 kcal/mol |
3.5889 kcal/mol |
15 67@LB@ | |@LB@5'-CUG...AGGCC UCGAU...UCG-3'@LB@ UUGCAAACGCAGC@LB@ ||||||||:||:|@LB@ AACGUUUGUGUUG@LB@3'-UUU...UGGUU UUGUG...UCA-5'@LB@ | |@LB@ 101 46@LB@@LB@@LB@Energy -19.31 kcal/mol@LB@Hybridization Energy -18.759 kcal/mol@LB@Unfolding Energy - mRNA 3.6583 kcal/mol@LB@Unfolding Energy - sRNA 3.5889 kcal/mol@LB@@LB@Position - mRNA 16 -- 66@LB@Position - sRNA 47 -- 100@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 119 |
0.005831 |
0.1745 |
stm1998 |
umuD |
-19.31 |
0.022806 |
33 -- 72 |
46 -- 81 |
DNA polymerase V subunit UmuD |
|
_____________32___________________73\n_____________|____________________|\n5'-AGA...AAAUA____C_______________CGGAA...ACA-3'\n______________UGCG_ACAUGACAAUACAAC\n______________|||:_|||::||||:|||||\n______________ACGU_UGUGUUGUUGUGUUG\n3'-UUU...GGUUA____U_______________UAGUG...UCA-5'\n_____________|____________________|\n_____________82___________________45\n |
45 -- 51 |
72 -- 78 |
-23.5929 kcal/mol |
1.21213 kcal/mol |
3.80548 kcal/mol |
32 73@LB@ | |@LB@5'-AGA...AAAUA C CGGAA...ACA-3'@LB@ UGCG ACAUGACAAUACAAC@LB@ |||: |||::||||:|||||@LB@ ACGU UGUGUUGUUGUGUUG@LB@3'-UUU...GGUUA U UAGUG...UCA-5'@LB@ | |@LB@ 82 45@LB@@LB@@LB@Energy -19.31 kcal/mol@LB@Hybridization Energy -23.5929 kcal/mol@LB@Unfolding Energy - mRNA 1.21213 kcal/mol@LB@Unfolding Energy - sRNA 3.80548 kcal/mol@LB@@LB@Position - mRNA 33 -- 72@LB@Position - sRNA 46 -- 81@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 72 |
0.003348 |
0.1596 |
stm0849 |
yliB |
-19.23 |
0.023527 |
175 -- 193 |
139 -- 162 |
glutathione ABC transporter substrate-binding protein GsiB |
|
_____________174______________________194\n_____________|________________________|\n5'-GUU...AUUCA____________UU__________GAACA...CGG-3'\n______________GACAGGCAGGGU_______CAGGA\n______________|||||:||||||_______|||||\n______________CUGUCUGUCCCA_______GUCCU\n3'-UUU...GAUAC____________UUUACAU_____UCACU...UCA-5'\n_____________|________________________|\n_____________163______________________138\n |
180 -- 186 |
151 -- 157 |
-27.2027 kcal/mol |
3.52422 kcal/mol |
3.69132 kcal/mol |
174 194@LB@ | |@LB@5'-GUU...AUUCA UU GAACA...CGG-3'@LB@ GACAGGCAGGGU CAGGA@LB@ |||||:|||||| |||||@LB@ CUGUCUGUCCCA GUCCU@LB@3'-UUU...GAUAC UUUACAU UCACU...UCA-5'@LB@ | |@LB@ 163 138@LB@@LB@@LB@Energy -19.23 kcal/mol@LB@Hybridization Energy -27.2027 kcal/mol@LB@Unfolding Energy - mRNA 3.52422 kcal/mol@LB@Unfolding Energy - sRNA 3.69132 kcal/mol@LB@@LB@Position - mRNA 175 -- 193@LB@Position - sRNA 139 -- 162@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 151 -- 157@LB@ |
