| 76 |
0.003978 |
0.182 |
b0336 |
codB |
-6.71 |
0.504284 |
39 -- 48 |
1 -- 11 |
cytosine transporter |
|
_____________38__________49\n_____________|___________|\n5'-CCA...UCUUA___________CCACU...UUU-3'\n______________UCAGGCC_UAC\n______________|||||||_:||\n______________AGUCCGG_GUG\n3'-UUU...CAAAA_______C___-5'\n_____________|__________|\n_____________12_________1\n |
39 -- 45 |
5 -- 11 |
-14.8291 kcal/mol |
2.46298 kcal/mol |
5.60325 kcal/mol |
38 49@LB@ | |@LB@5'-CCA...UCUUA CCACU...UUU-3'@LB@ UCAGGCC UAC@LB@ ||||||| :||@LB@ AGUCCGG GUG@LB@3'-UUU...CAAAA C -5'@LB@ | |@LB@ 12 1@LB@@LB@@LB@Energy -6.71 kcal/mol@LB@Hybridization Energy -14.8291 kcal/mol@LB@Unfolding Energy - mRNA 2.46298 kcal/mol@LB@Unfolding Energy - sRNA 5.60325 kcal/mol@LB@@LB@Position - mRNA 39 -- 48@LB@Position - sRNA 1 -- 11@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 143 |
0.008308 |
0.2033 |
b2049 |
cpsB |
-11.81 |
0.062535 |
184 -- 242 |
25 -- 78 |
mannose-1-phosphate guanyltransferase |
|
_____________183_______________________________________________________________243\n_____________|_________________________________________________________________|\n5'-ACA...UAAAU____U_______U____A_______A________CUCUAUCCA__________________U___UCCGG...GCC-3'\n______________GAUA_UCGGGGA_AAUU_UGGC_GC_GUCG_AAA_________GUUGUGAUG____GCAGG_GGC\n______________:|:|_:|:||||_|||:_||||_||_|:||_|||_________:||:|||||____:||:|_|||\n______________UUGU_GGUCCCU_UUAG_ACCG_CG_CGGC_UUU_________UAAUACUAC____UGUUC_CCG\n3'-UUU...CGCGG_________________A____A_______A___AA________________UCAA_________UGUCG...GUG-5'\n_____________|_________________________________________________________________|\n_____________79________________________________________________________________24\n |
227 -- 233 |
37 -- 43 |
-41.0645 kcal/mol |
15.3492 kcal/mol |
13.8987 kcal/mol |
183 243@LB@ | |@LB@5'-ACA...UAAAU U U A A CUCUAUCCA U UCCGG...GCC-3'@LB@ GAUA UCGGGGA AAUU UGGC GC GUCG AAA GUUGUGAUG GCAGG GGC@LB@ :|:| :|:|||| |||: |||| || |:|| ||| :||:||||| :||:| |||@LB@ UUGU GGUCCCU UUAG ACCG CG CGGC UUU UAAUACUAC UGUUC CCG@LB@3'-UUU...CGCGG A A A AA UCAA UGUCG...GUG-5'@LB@ | |@LB@ 79 24@LB@@LB@@LB@Energy -11.81 kcal/mol@LB@Hybridization Energy -41.0645 kcal/mol@LB@Unfolding Energy - mRNA 15.3492 kcal/mol@LB@Unfolding Energy - sRNA 13.8987 kcal/mol@LB@@LB@Position - mRNA 184 -- 242@LB@Position - sRNA 25 -- 78@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 28 |
0.001577 |
0.1727 |
b0598 |
cstA |
-11.00 |
0.089647 |
31 -- 48 |
28 -- 45 |
carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
|
_____________30__________________49\n_____________|___________________|\n5'-GUA...ACAGA___________A_______AAAAC...ACG-3'\n______________AUUA_GAUGAG_UUGCAGG\n______________||||_||||||_||:||:|\n______________UAAU_CUACUC_AAUGUUC\n3'-UUU...UUUAA____A______________CCGUG...GUG-5'\n_____________|___________________|\n_____________46__________________27\n |
42 -- 48 |
28 -- 34 |
-16.2081 kcal/mol |
3.25033 kcal/mol |
1.95571 kcal/mol |
30 49@LB@ | |@LB@5'-GUA...ACAGA A AAAAC...ACG-3'@LB@ AUUA GAUGAG UUGCAGG@LB@ |||| |||||| ||:||:|@LB@ UAAU CUACUC AAUGUUC@LB@3'-UUU...UUUAA A CCGUG...GUG-5'@LB@ | |@LB@ 46 27@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -16.2081 kcal/mol@LB@Unfolding Energy - mRNA 3.25033 kcal/mol@LB@Unfolding Energy - sRNA 1.95571 kcal/mol@LB@@LB@Position - mRNA 31 -- 48@LB@Position - sRNA 28 -- 45@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 109 |
0.005919 |
0.1855 |
b3807 |
cyaY |
-12.33 |
0.049473 |
23 -- 64 |
29 -- 73 |
iron-dependent inhibitor of iron-sulfur cluster formation; frataxin; iron-binding and oxidizing protein |
|
_____________22__________________________________________________65\n_____________|___________________________________________________|\n5'-UGA...AGAAA________GACG___UGUAA_______C_____________A_________AUCUU...AAA-3'\n______________CAGGGAAA____UGG_____CUGCGCC_UA_______AUGA_GAG__ACAA\n______________||||||||____|||_____|||||||_||_______||||_|||__||||\n______________GUCCCUUU____ACC_____GACGCGG_AU_______UACU_CUC__UGUU\n3'-UUU...UUGUG________AGA________________C__UUAAUAA____A___AA____CCCGU...GUG-5'\n_____________|___________________________________________________|\n_____________74__________________________________________________28\n |
43 -- 49 |
53 -- 59 |
-33.7794 kcal/mol |
12.1445 kcal/mol |
9.30637 kcal/mol |
22 65@LB@ | |@LB@5'-UGA...AGAAA GACG UGUAA C A AUCUU...AAA-3'@LB@ CAGGGAAA UGG CUGCGCC UA AUGA GAG ACAA@LB@ |||||||| ||| ||||||| || |||| ||| ||||@LB@ GUCCCUUU ACC GACGCGG AU UACU CUC UGUU@LB@3'-UUU...UUGUG AGA C UUAAUAA A AA CCCGU...GUG-5'@LB@ | |@LB@ 74 28@LB@@LB@@LB@Energy -12.33 kcal/mol@LB@Hybridization Energy -33.7794 kcal/mol@LB@Unfolding Energy - mRNA 12.1445 kcal/mol@LB@Unfolding Energy - sRNA 9.30637 kcal/mol@LB@@LB@Position - mRNA 23 -- 64@LB@Position - sRNA 29 -- 73@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 30 |
0.001614 |
0.1727 |
b3607 |
cysE |
-13.31 |
0.031682 |
13 -- 32 |
63 -- 81 |
serine acetyltransferase |
|
_____________12___________________33\n_____________|____________________|\n5'-CGG...GAAAU______A____A________AUCAA...CGA-3'\n______________GCCAAU_ACCG_GGAAAUUU\n______________|||||:_|||:_||||||:|\n______________CGGUUG_UGGU_CCUUUAGA\n3'-UUU...UGACG___________C________ACCGA...GUG-5'\n_____________|____________________|\n_____________82___________________62\n |
26 -- 32 |
63 -- 69 |
-21.8966 kcal/mol |
1.53041 kcal/mol |
7.0543 kcal/mol |
12 33@LB@ | |@LB@5'-CGG...GAAAU A A AUCAA...CGA-3'@LB@ GCCAAU ACCG GGAAAUUU@LB@ |||||: |||: ||||||:|@LB@ CGGUUG UGGU CCUUUAGA@LB@3'-UUU...UGACG C ACCGA...GUG-5'@LB@ | |@LB@ 82 62@LB@@LB@@LB@Energy -13.31 kcal/mol@LB@Hybridization Energy -21.8966 kcal/mol@LB@Unfolding Energy - mRNA 1.53041 kcal/mol@LB@Unfolding Energy - sRNA 7.0543 kcal/mol@LB@@LB@Position - mRNA 13 -- 32@LB@Position - sRNA 63 -- 81@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 84 |
0.004676 |
0.1855 |
b0526 |
cysS |
-14.43 |
0.019007 |
256 -- 269 |
64 -- 77 |
cysteinyl-tRNA synthetase |
|
_____________255____________270\n_____________|______________|\n5'-GCC...UAUUC______________GGCAU...ACG-3'\n______________ACGCCGGGGAAGUC\n______________||:||:|||||:||\n______________UGUGGUCCCUUUAG\n3'-UUU...GCGGU______________AACCG...GUG-5'\n_____________|______________|\n_____________78_____________63\n |
263 -- 269 |
64 -- 70 |
-23.2043 kcal/mol |
4.03864 kcal/mol |
4.72709 kcal/mol |
255 270@LB@ | |@LB@5'-GCC...UAUUC GGCAU...ACG-3'@LB@ ACGCCGGGGAAGUC@LB@ ||:||:|||||:||@LB@ UGUGGUCCCUUUAG@LB@3'-UUU...GCGGU AACCG...GUG-5'@LB@ | |@LB@ 78 63@LB@@LB@@LB@Energy -14.43 kcal/mol@LB@Hybridization Energy -23.2043 kcal/mol@LB@Unfolding Energy - mRNA 4.03864 kcal/mol@LB@Unfolding Energy - sRNA 4.72709 kcal/mol@LB@@LB@Position - mRNA 256 -- 269@LB@Position - sRNA 64 -- 77@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 64 -- 70@LB@ |
| 95 |
0.005084 |
0.1855 |
b3182 |
dacB |
-12.18 |
0.052827 |
253 -- 263 |
2 -- 12 |
D-alanyl-D-alanine carboxypeptidase |
|
_____________252_________264\n_____________|___________|\n5'-CCG...CAGUG___________AAUGU...GUG-3'\n______________UUCAGGCCGCA\n______________|||||||||||\n______________AAGUCCGGCGU\n3'-UUU...ACAAA___________G-5'\n_____________|___________|\n_____________13__________1\n |
257 -- 263 |
2 -- 8 |
-21.5619 kcal/mol |
3.68722 kcal/mol |
5.66926 kcal/mol |
252 264@LB@ | |@LB@5'-CCG...CAGUG AAUGU...GUG-3'@LB@ UUCAGGCCGCA@LB@ |||||||||||@LB@ AAGUCCGGCGU@LB@3'-UUU...ACAAA G-5'@LB@ | |@LB@ 13 1@LB@@LB@@LB@Energy -12.18 kcal/mol@LB@Hybridization Energy -21.5619 kcal/mol@LB@Unfolding Energy - mRNA 3.68722 kcal/mol@LB@Unfolding Energy - sRNA 5.66926 kcal/mol@LB@@LB@Position - mRNA 253 -- 263@LB@Position - sRNA 2 -- 12@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 2 -- 8@LB@ |
| 70 |
0.003478 |
0.1727 |
b1919 |
dcyD |
-7.16 |
0.432573 |
249 -- 279 |
53 -- 83 |
D-cysteine desulfhydrase PLP-dependent |
|
_____________248_______________________________280\n_____________|_________________________________|\n5'-CUG...UCGGC____________CUC___U________C_____UUUCU...GGG-3'\n______________GCGCCAACGCCG___GAA_AUCU__GC_GCGCU\n______________||||||||:||:___|||_||||__||_||||:\n______________CGCGGUUGUGGU___CUU_UAGA__CG_CGCGG\n3'-UUU...UAUGA____________CC_________AC__A_____CAUUU...GUG-5'\n_____________|_________________________________|\n_____________84________________________________52\n |
252 -- 258 |
74 -- 80 |
-36.5845 kcal/mol |
12.956 kcal/mol |
16.4685 kcal/mol |
248 280@LB@ | |@LB@5'-CUG...UCGGC CUC U C UUUCU...GGG-3'@LB@ GCGCCAACGCCG GAA AUCU GC GCGCU@LB@ ||||||||:||: ||| |||| || ||||:@LB@ CGCGGUUGUGGU CUU UAGA CG CGCGG@LB@3'-UUU...UAUGA CC AC A CAUUU...GUG-5'@LB@ | |@LB@ 84 52@LB@@LB@@LB@Energy -7.16 kcal/mol@LB@Hybridization Energy -36.5845 kcal/mol@LB@Unfolding Energy - mRNA 12.956 kcal/mol@LB@Unfolding Energy - sRNA 16.4685 kcal/mol@LB@@LB@Position - mRNA 249 -- 279@LB@Position - sRNA 53 -- 83@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 74 -- 80@LB@ |
| 40 |
0.002113 |
0.1727 |
b2314 |
dedD |
-12.04 |
0.056230 |
10 -- 25 |
1 -- 19 |
membrane-anchored periplasmic protein involved in septation |
|
_____________9___________________26\n_____________|___________________|\n5'-UUG...GCGCC____GAA____________GGUGC...AUU-3'\n______________ACUG______GGGCCGCGC\n______________||||______:||||||:|\n______________UGAC______UCCGGCGUG\n3'-UUU...UGUCG____AAAAAG_________-5'\n_____________|__________________|\n_____________20_________________1\n |
19 -- 25 |
1 -- 7 |
-21.4331 kcal/mol |
3.12458 kcal/mol |
6.26391 kcal/mol |
9 26@LB@ | |@LB@5'-UUG...GCGCC GAA GGUGC...AUU-3'@LB@ ACUG GGGCCGCGC@LB@ |||| :||||||:|@LB@ UGAC UCCGGCGUG@LB@3'-UUU...UGUCG AAAAAG -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -12.04 kcal/mol@LB@Hybridization Energy -21.4331 kcal/mol@LB@Unfolding Energy - mRNA 3.12458 kcal/mol@LB@Unfolding Energy - sRNA 6.26391 kcal/mol@LB@@LB@Position - mRNA 10 -- 25@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 186 |
0.01109 |
0.2089 |
b3234 |
degQ |
-11.96 |
0.058310 |
267 -- 277 |
3 -- 13 |
serine endoprotease periplasmic |
|
_____________266_________278\n_____________|___________|\n5'-CUG...CGUCA___________CGCGU...UUG-3'\n______________UUUCAGGCCGU\n______________||||||||||:\n______________AAAGUCCGGCG\n3'-UUU...GACAA___________UG-5'\n_____________|___________|\n_____________14__________2\n |
271 -- 277 |
3 -- 9 |
-19.4081 kcal/mol |
1.79109 kcal/mol |
5.63489 kcal/mol |
266 278@LB@ | |@LB@5'-CUG...CGUCA CGCGU...UUG-3'@LB@ UUUCAGGCCGU@LB@ ||||||||||:@LB@ AAAGUCCGGCG@LB@3'-UUU...GACAA UG-5'@LB@ | |@LB@ 14 2@LB@@LB@@LB@Energy -11.96 kcal/mol@LB@Hybridization Energy -19.4081 kcal/mol@LB@Unfolding Energy - mRNA 1.79109 kcal/mol@LB@Unfolding Energy - sRNA 5.63489 kcal/mol@LB@@LB@Position - mRNA 267 -- 277@LB@Position - sRNA 3 -- 13@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 3 -- 9@LB@ |
