11 |
0.0003246 |
0.08948 |
b2299 |
yfcD |
-11.11 |
0.078371 |
283 -- 295 |
5 -- 18 |
putative NUDIX hydrolase |
|
_____________282____________296\n_____________|______________|\n5'-AGA...CCGGG__________G___ACAGU-3'\n______________AACAAAUGCG_G_C\n______________||||||||||_|_|\n______________UUGUUUACGC_C_G\n3'-UUU...UACUA__________G_A_AAAG-5'\n_____________|______________|\n_____________19_____________4\n |
286 -- 292 |
9 -- 15 |
-15.7313 kcal/mol |
3.39963 kcal/mol |
1.2243 kcal/mol |
282 296@LB@ | |@LB@5'-AGA...CCGGG G ACAGU-3'@LB@ AACAAAUGCG G C@LB@ |||||||||| | |@LB@ UUGUUUACGC C G@LB@3'-UUU...UACUA G A AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -11.11 kcal/mol@LB@Hybridization Energy -15.7313 kcal/mol@LB@Unfolding Energy - mRNA 3.39963 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 283 -- 295@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 9 -- 15@LB@ |
12 |
0.0003263 |
0.08948 |
b4036 |
lamB |
-12.21 |
0.050157 |
189 -- 218 |
8 -- 32 |
maltose outer membrane porin (maltoporin) |
|
_____________188____________________________219\n_____________|______________________________|\n5'-CGC...AUGAC_____A___A_A________UACUC_____AAACU...GUU-3'\n______________UCAGG_GAU_G_AUGAUGAU_____UGCGC\n______________|||||_|||_|_|||||:|:_____|||||\n______________AGUCC_CUA_C_UACUAUUG_____ACGCG\n3'-UUU...ACUUA____________________UUU_______CAGAAAG-5'\n_____________|______________________________|\n_____________33_____________________________7\n |
202 -- 208 |
16 -- 22 |
-24.7132 kcal/mol |
4.6775 kcal/mol |
7.82314 kcal/mol |
188 219@LB@ | |@LB@5'-CGC...AUGAC A A A UACUC AAACU...GUU-3'@LB@ UCAGG GAU G AUGAUGAU UGCGC@LB@ ||||| ||| | |||||:|: |||||@LB@ AGUCC CUA C UACUAUUG ACGCG@LB@3'-UUU...ACUUA UUU CAGAAAG-5'@LB@ | |@LB@ 33 7@LB@@LB@@LB@Energy -12.21 kcal/mol@LB@Hybridization Energy -24.7132 kcal/mol@LB@Unfolding Energy - mRNA 4.6775 kcal/mol@LB@Unfolding Energy - sRNA 7.82314 kcal/mol@LB@@LB@Position - mRNA 189 -- 218@LB@Position - sRNA 8 -- 32@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 16 -- 22@LB@ |
13 |
0.0003435 |
0.08948 |
b2551 |
glyA |
-14.51 |
0.019315 |
147 -- 213 |
7 -- 69 |
serine hydroxymethyltransferase |
|
_____________146____________________________________________________________________214\n_____________|______________________________________________________________________|\n5'-CAA...CCAAC___A______UAUAAA_______A________GUUAG___________A____CG____U__________AAAUG...UCG-3'\n______________AGG_CCGC_C______GGCCAAA_AUUUUAUU_____CUGAG_UCAGG_GAUG__GAUG_UAAA_GCGUG\n______________|||_||:|_|______|||||||_||||:||:_____||||:_|||||_||||__|||:_:|||_|||:|\n______________UCC_GGUG_G______CCGGUUU_UAAAGUAG_____GACUU_AGUCC_CUAC__CUAU_GUUU_CGCGC\n________3'-UUU________A_CACUCA________________A_________A__________UA____U____A_____AGAAAG-5'\n_____________|______________________________________________________________________|\n_____________70_____________________________________________________________________6\n |
162 -- 168 |
48 -- 54 |
-52.4461 kcal/mol |
16.168 kcal/mol |
21.7638 kcal/mol |
146 214@LB@ | |@LB@5'-CAA...CCAAC A UAUAAA A GUUAG A CG U AAAUG...UCG-3'@LB@ AGG CCGC C GGCCAAA AUUUUAUU CUGAG UCAGG GAUG GAUG UAAA GCGUG@LB@ ||| ||:| | ||||||| ||||:||: ||||: ||||| |||| |||: :||| |||:|@LB@ UCC GGUG G CCGGUUU UAAAGUAG GACUU AGUCC CUAC CUAU GUUU CGCGC@LB@ 3'-UUU A CACUCA A A UA U A AGAAAG-5'@LB@ | |@LB@ 70 6@LB@@LB@@LB@Energy -14.51 kcal/mol@LB@Hybridization Energy -52.4461 kcal/mol@LB@Unfolding Energy - mRNA 16.168 kcal/mol@LB@Unfolding Energy - sRNA 21.7638 kcal/mol@LB@@LB@Position - mRNA 147 -- 213@LB@Position - sRNA 7 -- 69@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 48 -- 54@LB@ |
14 |
0.0004057 |
0.09812 |
b0886 |
cydC |
-15.95 |
0.010534 |
194 -- 211 |
2 -- 21 |
glutathione/cysteine ABC transporter export permease/ATPase |
|
_____________193__________________212\n_____________|____________________|\n5'-GCG...GAGGA___U________________GCUAC...UCG-3'\n______________GAU__UAAAUGCGCG_CUUU\n______________|||__:|||||||||_||||\n______________CUA__GUUUACGCGC_GAAA\n3'-UUU...UACUA___UU__________A____G-5'\n_____________|____________________|\n_____________22___________________1\n |
201 -- 207 |
7 -- 13 |
-19.6155 kcal/mol |
2.41081 kcal/mol |
1.25756 kcal/mol |
193 212@LB@ | |@LB@5'-GCG...GAGGA U GCUAC...UCG-3'@LB@ GAU UAAAUGCGCG CUUU@LB@ ||| :||||||||| ||||@LB@ CUA GUUUACGCGC GAAA@LB@3'-UUU...UACUA UU A G-5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -15.95 kcal/mol@LB@Hybridization Energy -19.6155 kcal/mol@LB@Unfolding Energy - mRNA 2.41081 kcal/mol@LB@Unfolding Energy - sRNA 1.25756 kcal/mol@LB@@LB@Position - mRNA 194 -- 211@LB@Position - sRNA 2 -- 21@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 7 -- 13@LB@ |
15 |
0.000461 |
0.102 |
b2140 |
dusC |
-12.07 |
0.053129 |
194 -- 211 |
3 -- 22 |
tRNA-dihydrouridine synthase C |
|
_____________193__________________212\n_____________|____________________|\n5'-AAU...GCGGG_________________G__ACUGG...UUG-3'\n______________UGAUGAU__AUGCGUGU_UU\n______________||||:|:__|||||:||_||\n______________ACUAUUG__UACGCGCA_AA\n3'-UUU...CUACU_______UU________G__AG-5'\n_____________|____________________|\n_____________23___________________2\n |
202 -- 208 |
6 -- 12 |
-18.0697 kcal/mol |
4.73944 kcal/mol |
1.259 kcal/mol |
193 212@LB@ | |@LB@5'-AAU...GCGGG G ACUGG...UUG-3'@LB@ UGAUGAU AUGCGUGU UU@LB@ ||||:|: |||||:|| ||@LB@ ACUAUUG UACGCGCA AA@LB@3'-UUU...CUACU UU G AG-5'@LB@ | |@LB@ 23 2@LB@@LB@@LB@Energy -12.07 kcal/mol@LB@Hybridization Energy -18.0697 kcal/mol@LB@Unfolding Energy - mRNA 4.73944 kcal/mol@LB@Unfolding Energy - sRNA 1.259 kcal/mol@LB@@LB@Position - mRNA 194 -- 211@LB@Position - sRNA 3 -- 22@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 6 -- 12@LB@ |
16 |
0.0004819 |
0.102 |
b0957 |
ompA |
-13.00 |
0.036257 |
182 -- 195 |
8 -- 22 |
outer membrane protein A (3a;II*;G;d) |
|
_____________181_____________196\n_____________|_______________|\n5'-CUU...UUGGA_______________AAAAA...AAC-3'\n______________UGAUAACGAG_GCGC\n______________|||||||:|:_||||\n______________ACUAUUGUUU_CGCG\n3'-UUU...CUACU__________A____CAGAAAG-5'\n_____________|_______________|\n_____________23______________7\n |
185 -- 191 |
13 -- 19 |
-17.7455 kcal/mol |
3.5039 kcal/mol |
1.23838 kcal/mol |
181 196@LB@ | |@LB@5'-CUU...UUGGA AAAAA...AAC-3'@LB@ UGAUAACGAG GCGC@LB@ |||||||:|: ||||@LB@ ACUAUUGUUU CGCG@LB@3'-UUU...CUACU A CAGAAAG-5'@LB@ | |@LB@ 23 7@LB@@LB@@LB@Energy -13.00 kcal/mol@LB@Hybridization Energy -17.7455 kcal/mol@LB@Unfolding Energy - mRNA 3.5039 kcal/mol@LB@Unfolding Energy - sRNA 1.23838 kcal/mol@LB@@LB@Position - mRNA 182 -- 195@LB@Position - sRNA 8 -- 22@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 13 -- 19@LB@ |
17 |
0.0005644 |
0.1124 |
b0949 |
uup |
-13.14 |
0.034258 |
282 -- 297 |
4 -- 21 |
replication regulatory ABC-F family DNA-binding ATPase |
|
_____________281________________298\n_____________|__________________|\n5'-GAU...UCGAA__________________GUC-3'\n______________GAUAACGAA__CGUGUUU\n______________||||||:||__||:||:|\n______________CUAUUGUUU__GCGCAGA\n3'-UUU...UACUA_________AC_______AAG-5'\n_____________|__________________|\n_____________22_________________3\n |
291 -- 297 |
4 -- 10 |
-16.3224 kcal/mol |
1.92683 kcal/mol |
1.2552 kcal/mol |
281 298@LB@ | |@LB@5'-GAU...UCGAA GUC-3'@LB@ GAUAACGAA CGUGUUU@LB@ ||||||:|| ||:||:|@LB@ CUAUUGUUU GCGCAGA@LB@3'-UUU...UACUA AC AAG-5'@LB@ | |@LB@ 22 3@LB@@LB@@LB@Energy -13.14 kcal/mol@LB@Hybridization Energy -16.3224 kcal/mol@LB@Unfolding Energy - mRNA 1.92683 kcal/mol@LB@Unfolding Energy - sRNA 1.2552 kcal/mol@LB@@LB@Position - mRNA 282 -- 297@LB@Position - sRNA 4 -- 21@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 4 -- 10@LB@ |
18 |
0.00061 |
0.1147 |
b2126 |
yehU |
-11.17 |
0.076396 |
235 -- 252 |
1 -- 18 |
inner membrane putative sensory kinase in two-component system with YehT |
|
_____________234________________253\n_____________|__________________|\n5'-GUC...GCUUC__________________UAGUC...UAA-3'\n______________AGCAGAUGUGCGUUUUUU\n______________|:||:|||:||||:|||:\n______________UUGUUUACGCGCAGAAAG\n3'-UUU...UACUA__________________-5'\n_____________|_________________|\n_____________19________________1\n |
246 -- 252 |
1 -- 7 |
-22.3117 kcal/mol |
9.89973 kcal/mol |
1.24077 kcal/mol |
234 253@LB@ | |@LB@5'-GUC...GCUUC UAGUC...UAA-3'@LB@ AGCAGAUGUGCGUUUUUU@LB@ |:||:|||:||||:|||:@LB@ UUGUUUACGCGCAGAAAG@LB@3'-UUU...UACUA -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -22.3117 kcal/mol@LB@Unfolding Energy - mRNA 9.89973 kcal/mol@LB@Unfolding Energy - sRNA 1.24077 kcal/mol@LB@@LB@Position - mRNA 235 -- 252@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 1 -- 7@LB@ |
19 |
0.0006629 |
0.1181 |
b2909 |
ygfB |
-11.13 |
0.077732 |
186 -- 206 |
4 -- 22 |
UPF0149 family protein |
|
_____________185___________________207\n_____________|_____________________|\n5'-AAA...CCCUU___C_________UUA_____AUACA...UCA-3'\n______________UGA_GACGAAUGC___UGUCU\n______________|||_:||:|||||___:||||\n______________ACU_UUGUUUACG___GCAGA\n3'-UUU...CUACU___A_________C_______AAG-5'\n_____________|_____________________|\n_____________23____________________3\n |
192 -- 198 |
10 -- 16 |
-17.2827 kcal/mol |
4.89762 kcal/mol |
1.2572 kcal/mol |
185 207@LB@ | |@LB@5'-AAA...CCCUU C UUA AUACA...UCA-3'@LB@ UGA GACGAAUGC UGUCU@LB@ ||| :||:||||| :||||@LB@ ACU UUGUUUACG GCAGA@LB@3'-UUU...CUACU A C AAG-5'@LB@ | |@LB@ 23 3@LB@@LB@@LB@Energy -11.13 kcal/mol@LB@Hybridization Energy -17.2827 kcal/mol@LB@Unfolding Energy - mRNA 4.89762 kcal/mol@LB@Unfolding Energy - sRNA 1.2572 kcal/mol@LB@@LB@Position - mRNA 186 -- 206@LB@Position - sRNA 4 -- 22@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 10 -- 16@LB@ |
20 |
0.0008552 |
0.1448 |
b4137 |
cutA |
-9.23 |
0.162618 |
220 -- 236 |
1 -- 16 |
divalent-cation tolerance protein copper sensitivity |
|
_____________219_______________237\n_____________|_________________|\n5'-CAA...AAGUU_____AC_______G__GUGGU...CGG-3'\n______________CGAAU__CGCGUCU_UC\n______________|:|||__|||||||_||\n______________GUUUA__GCGCAGA_AG\n3'-UUU...CUAUU_____C________A__-5'\n_____________|________________|\n_____________17_______________1\n |
227 -- 233 |
4 -- 10 |
-14.9299 kcal/mol |
4.46216 kcal/mol |
1.23857 kcal/mol |
219 237@LB@ | |@LB@5'-CAA...AAGUU AC G GUGGU...CGG-3'@LB@ CGAAU CGCGUCU UC@LB@ |:||| ||||||| ||@LB@ GUUUA GCGCAGA AG@LB@3'-UUU...CUAUU C A -5'@LB@ | |@LB@ 17 1@LB@@LB@@LB@Energy -9.23 kcal/mol@LB@Hybridization Energy -14.9299 kcal/mol@LB@Unfolding Energy - mRNA 4.46216 kcal/mol@LB@Unfolding Energy - sRNA 1.23857 kcal/mol@LB@@LB@Position - mRNA 220 -- 236@LB@Position - sRNA 1 -- 16@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 4 -- 10@LB@ |