191 |
0.01171 |
0.2159 |
b4221 |
tamB |
-9.06 |
0.207346 |
81 -- 101 |
52 -- 76 |
translocation and assembly module for autotransporter export inner membrane subunit |
|
_____________80_________________________102\n_____________|__________________________|\n5'-ACC...ACCGG__________________G_______GGAAU...AUC-3'\n______________UACCGGGG___UC__GGC_UGCGCUG\n______________:|||:|||___||__|||_|||||:|\n______________GUGGUCCC___AG__CCG_ACGCGGC\n3'-UUU...CGGUU________UUU__AA___________AUUUA...GUG-5'\n_____________|__________________________|\n_____________77_________________________51\n |
95 -- 101 |
52 -- 58 |
-29.4253 kcal/mol |
11.0996 kcal/mol |
9.26585 kcal/mol |
80 102@LB@ | |@LB@5'-ACC...ACCGG G GGAAU...AUC-3'@LB@ UACCGGGG UC GGC UGCGCUG@LB@ :|||:||| || ||| |||||:|@LB@ GUGGUCCC AG CCG ACGCGGC@LB@3'-UUU...CGGUU UUU AA AUUUA...GUG-5'@LB@ | |@LB@ 77 51@LB@@LB@@LB@Energy -9.06 kcal/mol@LB@Hybridization Energy -29.4253 kcal/mol@LB@Unfolding Energy - mRNA 11.0996 kcal/mol@LB@Unfolding Energy - sRNA 9.26585 kcal/mol@LB@@LB@Position - mRNA 81 -- 101@LB@Position - sRNA 52 -- 76@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 52 -- 58@LB@ |
192 |
0.01187 |
0.2159 |
b2600 |
tyrA |
-9.34 |
0.184498 |
136 -- 155 |
70 -- 86 |
fused chorismate mutase T/prephenate dehydrogenase |
|
_____________135__________________156\n_____________|____________________|\n5'-UCG...GCCUU_______G__AUU_______AUCUG...UGG-3'\n______________GCUGCGU_AA___CAUCAGG\n______________:|||||:_||___||:||||\n______________UGACGCG_UU___GUGGUCC\n3'-UUU...GCUUA_______G____________CUUUA...GUG-5'\n_____________|____________________|\n_____________87___________________69\n |
149 -- 155 |
70 -- 76 |
-22.0981 kcal/mol |
5.48162 kcal/mol |
7.27772 kcal/mol |
135 156@LB@ | |@LB@5'-UCG...GCCUU G AUU AUCUG...UGG-3'@LB@ GCUGCGU AA CAUCAGG@LB@ :|||||: || ||:||||@LB@ UGACGCG UU GUGGUCC@LB@3'-UUU...GCUUA G CUUUA...GUG-5'@LB@ | |@LB@ 87 69@LB@@LB@@LB@Energy -9.34 kcal/mol@LB@Hybridization Energy -22.0981 kcal/mol@LB@Unfolding Energy - mRNA 5.48162 kcal/mol@LB@Unfolding Energy - sRNA 7.27772 kcal/mol@LB@@LB@Position - mRNA 136 -- 155@LB@Position - sRNA 70 -- 86@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 70 -- 76@LB@ |
193 |
0.01192 |
0.2159 |
b2453 |
eutG |
-10.04 |
0.136932 |
27 -- 40 |
17 -- 30 |
ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase |
|
_____________26_____________41\n_____________|______________|\n5'-GGC...UAUUG_______G______ACUGA...GUC-3'\n______________AAGGGCA_GGCAUU\n______________|||||||_:|||:|\n______________UUCCCGU_UCGUGA\n3'-UUU...CAAUG_______G______CAAAA...GUG-5'\n_____________|______________|\n_____________31_____________16\n |
27 -- 33 |
24 -- 30 |
-21.9245 kcal/mol |
3.17394 kcal/mol |
8.71417 kcal/mol |
26 41@LB@ | |@LB@5'-GGC...UAUUG G ACUGA...GUC-3'@LB@ AAGGGCA GGCAUU@LB@ ||||||| :|||:|@LB@ UUCCCGU UCGUGA@LB@3'-UUU...CAAUG G CAAAA...GUG-5'@LB@ | |@LB@ 31 16@LB@@LB@@LB@Energy -10.04 kcal/mol@LB@Hybridization Energy -21.9245 kcal/mol@LB@Unfolding Energy - mRNA 3.17394 kcal/mol@LB@Unfolding Energy - sRNA 8.71417 kcal/mol@LB@@LB@Position - mRNA 27 -- 40@LB@Position - sRNA 17 -- 30@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 24 -- 30@LB@ |
194 |
0.01194 |
0.2159 |
b3454 |
livF |
-10.01 |
0.138607 |
25 -- 47 |
72 -- 86 |
branched-chain amino acid ABC transporter ATPase |
|
_____________24______________________48\n_____________|_______________________|\n5'-AGA...GCCGA_______AAUCAUCA________CUAUC...UUG-3'\n______________ACUGCGC________CAACACCA\n______________|||||||________||||||||\n______________UGACGCG________GUUGUGGU\n3'-UUU...GCUUA_______________________CCCUU...GUG-5'\n_____________|_______________________|\n_____________87______________________71\n |
41 -- 47 |
72 -- 78 |
-22.1496 kcal/mol |
4.90616 kcal/mol |
7.23529 kcal/mol |
24 48@LB@ | |@LB@5'-AGA...GCCGA AAUCAUCA CUAUC...UUG-3'@LB@ ACUGCGC CAACACCA@LB@ ||||||| ||||||||@LB@ UGACGCG GUUGUGGU@LB@3'-UUU...GCUUA CCCUU...GUG-5'@LB@ | |@LB@ 87 71@LB@@LB@@LB@Energy -10.01 kcal/mol@LB@Hybridization Energy -22.1496 kcal/mol@LB@Unfolding Energy - mRNA 4.90616 kcal/mol@LB@Unfolding Energy - sRNA 7.23529 kcal/mol@LB@@LB@Position - mRNA 25 -- 47@LB@Position - sRNA 72 -- 86@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 72 -- 78@LB@ |
195 |
0.01197 |
0.2159 |
b0738 |
tolR |
-7.83 |
0.338188 |
180 -- 193 |
26 -- 40 |
membrane spanning protein in TolA-TolQ-TolR complex |
|
_____________179_____________194\n_____________|_______________|\n5'-UGG...UUAGC______CA_______GUAAG...UGG-3'\n______________GA_GAG__ACAAGGG\n______________||_|||__|||||||\n______________CU_CUC__UGUUCCC\n3'-UUU...UAAUA__A___AA_______GUGUC...GUG-5'\n_____________|_______________|\n_____________41______________25\n |
187 -- 193 |
26 -- 32 |
-14.5104 kcal/mol |
3.98616 kcal/mol |
2.69022 kcal/mol |
179 194@LB@ | |@LB@5'-UGG...UUAGC CA GUAAG...UGG-3'@LB@ GA GAG ACAAGGG@LB@ || ||| |||||||@LB@ CU CUC UGUUCCC@LB@3'-UUU...UAAUA A AA GUGUC...GUG-5'@LB@ | |@LB@ 41 25@LB@@LB@@LB@Energy -7.83 kcal/mol@LB@Hybridization Energy -14.5104 kcal/mol@LB@Unfolding Energy - mRNA 3.98616 kcal/mol@LB@Unfolding Energy - sRNA 2.69022 kcal/mol@LB@@LB@Position - mRNA 180 -- 193@LB@Position - sRNA 26 -- 40@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 26 -- 32@LB@ |
196 |
0.01202 |
0.2159 |
b1729 |
ydjN |
-13.87 |
0.024594 |
143 -- 155 |
72 -- 84 |
putative transporter |
|
_____________142___________156\n_____________|_____________|\n5'-CAU...AAUCU_____________UGACU...UGC-3'\n______________UGCGCCAACACUA\n______________|||||||||||:|\n______________ACGCGGUUGUGGU\n3'-UUU...UUAUG_____________CCCUU...GUG-5'\n_____________|_____________|\n_____________85____________71\n |
149 -- 155 |
72 -- 78 |
-23.7045 kcal/mol |
2.6326 kcal/mol |
7.20328 kcal/mol |
142 156@LB@ | |@LB@5'-CAU...AAUCU UGACU...UGC-3'@LB@ UGCGCCAACACUA@LB@ |||||||||||:|@LB@ ACGCGGUUGUGGU@LB@3'-UUU...UUAUG CCCUU...GUG-5'@LB@ | |@LB@ 85 71@LB@@LB@@LB@Energy -13.87 kcal/mol@LB@Hybridization Energy -23.7045 kcal/mol@LB@Unfolding Energy - mRNA 2.6326 kcal/mol@LB@Unfolding Energy - sRNA 7.20328 kcal/mol@LB@@LB@Position - mRNA 143 -- 155@LB@Position - sRNA 72 -- 84@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 72 -- 78@LB@ |
197 |
0.01211 |
0.2164 |
b0495 |
ybbA |
-7.53 |
0.379415 |
88 -- 97 |
1 -- 10 |
putative ABC transporter ATPase |
|
_____________87_________98\n_____________|__________|\n5'-GCC...CAGGC__________UGGCA...UCA-3'\n______________CAGGCCGCGC\n______________||||||||:|\n______________GUCCGGCGUG\n3'-UUU...AAAAA__________-5'\n_____________|_________|\n_____________11________1\n |
91 -- 97 |
1 -- 7 |
-21.6304 kcal/mol |
8.71663 kcal/mol |
5.44172 kcal/mol |
87 98@LB@ | |@LB@5'-GCC...CAGGC UGGCA...UCA-3'@LB@ CAGGCCGCGC@LB@ ||||||||:|@LB@ GUCCGGCGUG@LB@3'-UUU...AAAAA -5'@LB@ | |@LB@ 11 1@LB@@LB@@LB@Energy -7.53 kcal/mol@LB@Hybridization Energy -21.6304 kcal/mol@LB@Unfolding Energy - mRNA 8.71663 kcal/mol@LB@Unfolding Energy - sRNA 5.44172 kcal/mol@LB@@LB@Position - mRNA 88 -- 97@LB@Position - sRNA 1 -- 10@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 1 -- 7@LB@ |
198 |
0.01217 |
0.2164 |
b1236 |
galU |
-11.62 |
0.068156 |
187 -- 208 |
56 -- 74 |
glucose-1-phosphate uridylyltransferase |
|
_____________186____________________209\n_____________|______________________|\n5'-CAA...ACAGU_____A______AAA_______CAUUA...UGC-3'\n______________CCAGG_GAAUUU___UGGCUGC\n______________|||||_:|||:|___|||||||\n______________GGUCC_UUUAGA___ACCGACG\n3'-UUU...GUUGU_____C________________CGGCA...GUG-5'\n_____________|______________________|\n_____________75_____________________55\n |
202 -- 208 |
56 -- 62 |
-24.2568 kcal/mol |
4.50323 kcal/mol |
8.13729 kcal/mol |
186 209@LB@ | |@LB@5'-CAA...ACAGU A AAA CAUUA...UGC-3'@LB@ CCAGG GAAUUU UGGCUGC@LB@ ||||| :|||:| |||||||@LB@ GGUCC UUUAGA ACCGACG@LB@3'-UUU...GUUGU C CGGCA...GUG-5'@LB@ | |@LB@ 75 55@LB@@LB@@LB@Energy -11.62 kcal/mol@LB@Hybridization Energy -24.2568 kcal/mol@LB@Unfolding Energy - mRNA 4.50323 kcal/mol@LB@Unfolding Energy - sRNA 8.13729 kcal/mol@LB@@LB@Position - mRNA 187 -- 208@LB@Position - sRNA 56 -- 74@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 56 -- 62@LB@ |
199 |
0.0124 |
0.2193 |
b0128 |
yadH |
-9.95 |
0.142385 |
61 -- 79 |
68 -- 88 |
putative ABC transporter permease |
|
_____________60____________________80\n_____________|_____________________|\n5'-UUA...UUGAA_________G___________UCAAC...UCA-3'\n______________GUGCUGCGU_AGCA__GGGGA\n______________:|:|||||:_|:||__:||||\n______________UAUGACGCG_UUGU__UCCCU\n3'-UUU...GCGCU_________G____GG_____UUAGA...GUG-5'\n_____________|_____________________|\n_____________89____________________67\n |
61 -- 67 |
82 -- 88 |
-26.4707 kcal/mol |
9.14335 kcal/mol |
7.38144 kcal/mol |
60 80@LB@ | |@LB@5'-UUA...UUGAA G UCAAC...UCA-3'@LB@ GUGCUGCGU AGCA GGGGA@LB@ :|:|||||: |:|| :||||@LB@ UAUGACGCG UUGU UCCCU@LB@3'-UUU...GCGCU G GG UUAGA...GUG-5'@LB@ | |@LB@ 89 67@LB@@LB@@LB@Energy -9.95 kcal/mol@LB@Hybridization Energy -26.4707 kcal/mol@LB@Unfolding Energy - mRNA 9.14335 kcal/mol@LB@Unfolding Energy - sRNA 7.38144 kcal/mol@LB@@LB@Position - mRNA 61 -- 79@LB@Position - sRNA 68 -- 88@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 82 -- 88@LB@ |
200 |
0.01246 |
0.2193 |
b0425 |
panE |
-12.07 |
0.055655 |
285 -- 293 |
54 -- 62 |
2-dehydropantoate reductase NADPH-specific |
|
_____________284_______294\n_____________|_________|\n5'-AUC...AGGGC_________GUACCGC-3'\n______________UGGCUGCGC\n______________|||||||||\n______________ACCGACGCG\n3'-UUU...UUAGA_________GCAUU...GUG-5'\n_____________|_________|\n_____________63________53\n |
287 -- 293 |
54 -- 60 |
-19.0333 kcal/mol |
2.09185 kcal/mol |
4.8739 kcal/mol |
284 294@LB@ | |@LB@5'-AUC...AGGGC GUACCGC-3'@LB@ UGGCUGCGC@LB@ |||||||||@LB@ ACCGACGCG@LB@3'-UUU...UUAGA GCAUU...GUG-5'@LB@ | |@LB@ 63 53@LB@@LB@@LB@Energy -12.07 kcal/mol@LB@Hybridization Energy -19.0333 kcal/mol@LB@Unfolding Energy - mRNA 2.09185 kcal/mol@LB@Unfolding Energy - sRNA 4.8739 kcal/mol@LB@@LB@Position - mRNA 285 -- 293@LB@Position - sRNA 54 -- 62@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 54 -- 60@LB@ |