64 |
0.003108 |
0.1596 |
stm4162 |
thiF |
-13.53 |
0.200092 |
247 -- 294 |
34 -- 76 |
molybdopterin/thiamine biosynthesis adenylyltransferase |
|
_____________246___________________295\n_____________|_____________________|\n5'-GCA...GCUCG_______________A_____AGCAA...UUG-3'\n______________GCGAUAUCGCGAUUG_AGGCC\n______________:|:|:|||:|:|::|_|:|||\n______________UGUUGUAGUGUUGGC_UUCGG\n3'-UUU...UGUUG_______________A_____UUUUC...UCA-5'\n_____________|_____________________|\n_____________77____________________33\n |
248 -- 254 |
69 -- 75 |
-25.2172 kcal/mol |
7.66984 kcal/mol |
8.92374 kcal/mol |
246 295@LB@ | |@LB@5'-GCA...GCUCG A AGCAA...UUG-3'@LB@ GCGAUAUCGCGAUUG AGGCC@LB@ :|:|:|||:|:|::| |:|||@LB@ UGUUGUAGUGUUGGC UUCGG@LB@3'-UUU...UGUUG A UUUUC...UCA-5'@LB@ | |@LB@ 77 33@LB@@LB@@LB@Energy -13.53 kcal/mol@LB@Hybridization Energy -25.2172 kcal/mol@LB@Unfolding Energy - mRNA 7.66984 kcal/mol@LB@Unfolding Energy - sRNA 8.92374 kcal/mol@LB@@LB@Position - mRNA 247 -- 294@LB@Position - sRNA 34 -- 76@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 69 -- 75@LB@ |
162 |
0.00849 |
0.1864 |
stm4221 |
pgi |
-15.16 |
0.111294 |
249 -- 289 |
56 -- 88 |
glucose-6-phosphate isomerase |
|
_____________248_______________________________________290\n_____________|_________________________________________|\n5'-GCU...UCCAG______U_____GAAAUGAAA_____________C______UUUCG...ACG-3'\n______________AAACAC_ACGAU_________GACGUUACGAUCG_UGAGCU\n______________||||||_||:|:_________:||:|:||:|:||_|:|||:\n______________UUUGUG_UGUUG_________UUGUAGUGUUGGC_AUUCGG\n3'-UUU...UAACG______U_____UG___________________________UUUUC...UCA-5'\n_____________|_________________________________________|\n_____________89________________________________________55\n |
272 -- 278 |
66 -- 72 |
-30.3131 kcal/mol |
6.22888 kcal/mol |
11.698 kcal/mol |
248 290@LB@ | |@LB@5'-GCU...UCCAG U GAAAUGAAA C UUUCG...ACG-3'@LB@ AAACAC ACGAU GACGUUACGAUCG UGAGCU@LB@ |||||| ||:|: :||:|:||:|:|| |:|||:@LB@ UUUGUG UGUUG UUGUAGUGUUGGC AUUCGG@LB@3'-UUU...UAACG U UG UUUUC...UCA-5'@LB@ | |@LB@ 89 55@LB@@LB@@LB@Energy -15.16 kcal/mol@LB@Hybridization Energy -30.3131 kcal/mol@LB@Unfolding Energy - mRNA 6.22888 kcal/mol@LB@Unfolding Energy - sRNA 11.698 kcal/mol@LB@@LB@Position - mRNA 249 -- 289@LB@Position - sRNA 56 -- 88@LB@Position Seed - mRNA 272 -- 278@LB@Position Seed - sRNA 66 -- 72@LB@ |
46 |
0.001637 |
0.1267 |
stm2313 |
elaC |
-17.21 |
0.051329 |
250 -- 300 |
51 -- 90 |
ribonuclease Z |
stm1109 |
_____________249_____________________________________________301\n_____________|_______________________________________________|\n5'-UCG...CUCAC____UGUA________UUUAUUACAUCU________CAAC_______GGAG-3'\n______________GCAA____ACGGCAAU____________GCAACAUC____GCAGCCG\n______________||||____||::|||:____________:|||||||____:||:|||\n______________CGUU____UGUUGUUG____________UGUUGUAG____UGUUGGC\n3'-UUU...GUUAA____UG_________________________________________AUUCG...UCA-5'\n_____________|_______________________________________________|\n_____________91______________________________________________50\n |
290 -- 296 |
62 -- 68 |
-28.5454 kcal/mol |
7.10881 kcal/mol |
8.62576 kcal/mol |
249 301@LB@ | |@LB@5'-UCG...CUCAC UGUA UUUAUUACAUCU CAAC GGAG-3'@LB@ GCAA ACGGCAAU GCAACAUC GCAGCCG@LB@ |||| ||::|||: :||||||| :||:|||@LB@ CGUU UGUUGUUG UGUUGUAG UGUUGGC@LB@3'-UUU...GUUAA UG AUUCG...UCA-5'@LB@ | |@LB@ 91 50@LB@@LB@@LB@Energy -17.21 kcal/mol@LB@Hybridization Energy -28.5454 kcal/mol@LB@Unfolding Energy - mRNA 7.10881 kcal/mol@LB@Unfolding Energy - sRNA 8.62576 kcal/mol@LB@@LB@Position - mRNA 250 -- 300@LB@Position - sRNA 51 -- 90@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 62 -- 68@LB@ |
77 |
0.003608 |
0.1596 |
stm4473 |
yjgM |
-11.12 |
0.437983 |
252 -- 285 |
42 -- 82 |
GNAT family N-acetyltransferase |
|
_____________251________________286\n_____________|__________________|\n5'-AUU...CGCCG________CC___C____AUGCC...ACG-3'\n______________AAUCACUA___GC_GACA\n______________||||||||___:|_||||\n______________UUAGUGAU___UG_CUGU\n3'-UUU...UGUAA________ACC__U____CCCAU...UCA-5'\n_____________|__________________|\n_____________83_________________41\n |
240 -- 246 |
165 -- 171 |
-13.0222 kcal/mol |
3.39479 kcal/mol |
3.49149 kcal/mol |
251 286@LB@ | |@LB@5'-AUU...CGCCG CC C AUGCC...ACG-3'@LB@ AAUCACUA GC GACA@LB@ |||||||| :| ||||@LB@ UUAGUGAU UG CUGU@LB@3'-UUU...UGUAA ACC U CCCAU...UCA-5'@LB@ | |@LB@ 83 41@LB@@LB@@LB@Energy -11.12 kcal/mol@LB@Hybridization Energy -13.0222 kcal/mol@LB@Unfolding Energy - mRNA 3.39479 kcal/mol@LB@Unfolding Energy - sRNA 3.49149 kcal/mol@LB@@LB@Position - mRNA 252 -- 285@LB@Position - sRNA 42 -- 82@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 165 -- 171@LB@ |
150 |
0.007945 |
0.1845 |
stm2555 |
glyA |
-15.42 |
0.100951 |
252 -- 282 |
137 -- 168 |
serine hydroxymethyltransferase |
|
_____________251_________________________________283\n_____________|___________________________________|\n5'-CAC...GGCAG________________AA________GUC______AGCAC...UCG-3'\n______________GCUAUGGA___GCAGG__AAA_GUAC___AGGAAG\n______________:|||||||___:||||__|||_||||___||||||\n______________UGAUACCU___UGUCC__UUU_CAUG___UCCUUC\n3'-UUU...AUUAG________GUC_____CA___A_____________ACUUU...UCA-5'\n_____________|___________________________________|\n_____________169_________________________________136\n |
253 -- 259 |
161 -- 167 |
-28.2568 kcal/mol |
5.17684 kcal/mol |
6.91101 kcal/mol |
251 283@LB@ | |@LB@5'-CAC...GGCAG AA GUC AGCAC...UCG-3'@LB@ GCUAUGGA GCAGG AAA GUAC AGGAAG@LB@ :||||||| :|||| ||| |||| ||||||@LB@ UGAUACCU UGUCC UUU CAUG UCCUUC@LB@3'-UUU...AUUAG GUC CA A ACUUU...UCA-5'@LB@ | |@LB@ 169 136@LB@@LB@@LB@Energy -15.42 kcal/mol@LB@Hybridization Energy -28.2568 kcal/mol@LB@Unfolding Energy - mRNA 5.17684 kcal/mol@LB@Unfolding Energy - sRNA 6.91101 kcal/mol@LB@@LB@Position - mRNA 252 -- 282@LB@Position - sRNA 137 -- 168@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 161 -- 167@LB@ |
131 |
0.006551 |
0.1774 |
stm3217 |
aer |
-17.88 |
0.039631 |
254 -- 298 |
36 -- 77 |
senses cellular redox state or proton motive force; similar to E. coli aerotaxis sensor receptor flavoprotein (AAC76107.1); Blastp hit to AAC76107.1 (506 aa) 83% identity in aa 1 - 506 |
|
_____________253____________________________________________________________________________________299\n_____________|______________________________________________________________________________________|\n5'-UUU...AAGGC______UGA_____________________ACAAA____AA__AUU____________________UC__G______UUUA_____UAAAG...CCA-3'\n______________GCAGGA___GGUGAAAA_________UCGU_____UAUU__GG____AAUCGCA____AAUUGCGA__CA_AGCAAU____ACAAC\n______________:|||||___:|||||||_________|||:_____||::__||____|||||||____||||||:|__||_|:|||:____|||||\n______________UGUCCU___UCACUUUU_________AGCG_____AUGG__CC____UUAGCGU____UUAACGUU__GU_UUGUUG____UGUUG\n3'-UUU...UUACA_________________UCCCAUCAG_____________CA__AGAC_______CUGG________U___G_______________UAGUG...UCA-5'\n_____________|______________________________________________________________________________________|\n_____________78_____________________________________________________________________________________35\n |
89 -- 95 |
99 -- 105 |
-43.6348 kcal/mol |
13.4466 kcal/mol |
20.9633 kcal/mol |
253 299@LB@ | |@LB@5'-UUU...AAGGC UGA ACAAA AA AUU UC G UUUA UAAAG...CCA-3'@LB@ GCAGGA GGUGAAAA UCGU UAUU GG AAUCGCA AAUUGCGA CA AGCAAU ACAAC@LB@ :||||| :||||||| |||: ||:: || ||||||| ||||||:| || |:|||: |||||@LB@ UGUCCU UCACUUUU AGCG AUGG CC UUAGCGU UUAACGUU GU UUGUUG UGUUG@LB@3'-UUU...UUACA UCCCAUCAG CA AGAC CUGG U G UAGUG...UCA-5'@LB@ | |@LB@ 78 35@LB@@LB@@LB@Energy -17.88 kcal/mol@LB@Hybridization Energy -43.6348 kcal/mol@LB@Unfolding Energy - mRNA 13.4466 kcal/mol@LB@Unfolding Energy - sRNA 20.9633 kcal/mol@LB@@LB@Position - mRNA 254 -- 298@LB@Position - sRNA 36 -- 77@LB@Position Seed - mRNA 89 -- 95@LB@Position Seed - sRNA 99 -- 105@LB@ |
37 |
0.001263 |
0.1215 |
stm2511 |
guaB |
-22.14 |
0.007548 |
255 -- 298 |
35 -- 73 |
IMP dehydrogenase |
|
_____________254___________________________________________299\n_____________|_____________________________________________|\n5'-GGC...UUCCC_______UCC_____UUU______UACU___G___UC________GU-3'\n______________GC_UCAC___ACCGU___GCCGAA____GCC_AUC__AGCACGCA\n______________:|_||||___|||||___|||:||____|||_|||__|:||||||\n______________UG_AGUG___UGGCA___CGGUUU____CGG_UAG__UUGUGCGU\n3'-UUU...UGUGU__U____U_______UU_______U______G___UC________AAGGC...UCA-5'\n_____________|_____________________________________________|\n_____________74____________________________________________34\n |
292 -- 298 |
35 -- 41 |
-39.0524 kcal/mol |
5.99157 kcal/mol |
19.7557 kcal/mol |
254 299@LB@ | |@LB@5'-GGC...UUCCC UCC UUU UACU G UC GU-3'@LB@ GC UCAC ACCGU GCCGAA GCC AUC AGCACGCA@LB@ :| |||| ||||| |||:|| ||| ||| |:||||||@LB@ UG AGUG UGGCA CGGUUU CGG UAG UUGUGCGU@LB@3'-UUU...UGUGU U U UU U G UC AAGGC...UCA-5'@LB@ | |@LB@ 74 34@LB@@LB@@LB@Energy -22.14 kcal/mol@LB@Hybridization Energy -39.0524 kcal/mol@LB@Unfolding Energy - mRNA 5.99157 kcal/mol@LB@Unfolding Energy - sRNA 19.7557 kcal/mol@LB@@LB@Position - mRNA 255 -- 298@LB@Position - sRNA 35 -- 73@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 35 -- 41@LB@ |
111 |
0.005436 |
0.1728 |
stm2683 |
yfjB |
-15.36 |
0.103307 |
255 -- 299 |
43 -- 90 |
NAD(+) kinase |
|
_____________254___________________________________________________________________300\n_____________|_____________________________________________________________________|\n5'-CUC...UUCGC__________GAU____UU______UUCAA__________ACUCACAUU_____AUCAAUCU_______AAGGA...AGG-3'\n______________UUAUUAUGGG___CAGA__CAGGGU________GGGAAGU___________GUC________UCGCUAC\n______________|:|:|||||:___||||__||||||________:||||||___________|||________|||||||\n______________AGUGAUACCU___GUCU__GUCCCA________UCCUUCA___________CAG________AGCGAUG\n3'-UUU...UAAUU_________________________UUUACAUG_______CUUUUUCCCAU__________________GCACC...UCA-5'\n_____________|_____________________________________________________________________|\n_____________91____________________________________________________________________42\n |
179 -- 185 |
115 -- 121 |
-40.6869 kcal/mol |
14.2494 kcal/mol |
12.858 kcal/mol |
254 300@LB@ | |@LB@5'-CUC...UUCGC GAU UU UUCAA ACUCACAUU AUCAAUCU AAGGA...AGG-3'@LB@ UUAUUAUGGG CAGA CAGGGU GGGAAGU GUC UCGCUAC@LB@ |:|:|||||: |||| |||||| :|||||| ||| |||||||@LB@ AGUGAUACCU GUCU GUCCCA UCCUUCA CAG AGCGAUG@LB@3'-UUU...UAAUU UUUACAUG CUUUUUCCCAU GCACC...UCA-5'@LB@ | |@LB@ 91 42@LB@@LB@@LB@Energy -15.36 kcal/mol@LB@Hybridization Energy -40.6869 kcal/mol@LB@Unfolding Energy - mRNA 14.2494 kcal/mol@LB@Unfolding Energy - sRNA 12.858 kcal/mol@LB@@LB@Position - mRNA 255 -- 299@LB@Position - sRNA 43 -- 90@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 115 -- 121@LB@ |
45 |
0.001635 |
0.1267 |
stm2351 |
hisP |
-13.82 |
0.180688 |
258 -- 282 |
115 -- 140 |
histidine and lysine/arginine/ornithine transport protein |
|
_____________257__________________________283\n_____________|____________________________|\n5'-UAC...GUCAU______CU____________________AGGCC...AUG-3'\n______________GAAGUG__GAAAGGGGUA___UCGCUGC\n______________||||||__:|||:|||||___|||||:|\n______________CUUCAC__UUUUUCCCAU___AGCGAUG\n3'-UUU...AUGUC__________________CAG_______GCACC...UCA-5'\n_____________|____________________________|\n_____________141__________________________114\n |
276 -- 282 |
115 -- 121 |
-29.6028 kcal/mol |
6.54228 kcal/mol |
8.52785 kcal/mol |
257 283@LB@ | |@LB@5'-UAC...GUCAU CU AGGCC...AUG-3'@LB@ GAAGUG GAAAGGGGUA UCGCUGC@LB@ |||||| :|||:||||| |||||:|@LB@ CUUCAC UUUUUCCCAU AGCGAUG@LB@3'-UUU...AUGUC CAG GCACC...UCA-5'@LB@ | |@LB@ 141 114@LB@@LB@@LB@Energy -13.82 kcal/mol@LB@Hybridization Energy -29.6028 kcal/mol@LB@Unfolding Energy - mRNA 6.54228 kcal/mol@LB@Unfolding Energy - sRNA 8.52785 kcal/mol@LB@@LB@Position - mRNA 258 -- 282@LB@Position - sRNA 115 -- 140@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 115 -- 121@LB@ |
120 |
0.006002 |
0.1758 |
stm2925 |
nlpD |
-17.26 |
0.050371 |
258 -- 274 |
153 -- 170 |
lipoprotein NlpD |
|
_____________257________________275\n_____________|__________________|\n5'-GUU...UGGUU___________U______UUGUA...CGG-3'\n______________UCACUAUGG_C_GGCAGG\n______________|||||||||_|_|:||||\n______________AGUGAUACC_G_CUGUCC\n3'-UUU...UAAUU_________U_U______CAUUU...UCA-5'\n_____________|__________________|\n_____________171________________152\n |
260 -- 266 |
162 -- 168 |
-24.411 kcal/mol |
4.59255 kcal/mol |
3.4766 kcal/mol |
257 275@LB@ | |@LB@5'-GUU...UGGUU U UUGUA...CGG-3'@LB@ UCACUAUGG C GGCAGG@LB@ ||||||||| | |:||||@LB@ AGUGAUACC G CUGUCC@LB@3'-UUU...UAAUU U U CAUUU...UCA-5'@LB@ | |@LB@ 171 152@LB@@LB@@LB@Energy -17.26 kcal/mol@LB@Hybridization Energy -24.411 kcal/mol@LB@Unfolding Energy - mRNA 4.59255 kcal/mol@LB@Unfolding Energy - sRNA 3.4766 kcal/mol@LB@@LB@Position - mRNA 258 -- 274@LB@Position - sRNA 153 -- 170@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 162 -- 168@LB@ |