| 144 |
0.008344 |
0.2033 |
b3159 |
yhbV |
-10.12 |
0.132236 |
144 -- 228 |
15 -- 82 |
U32 peptidase family protein |
|
_____________143______________________________________________________________________________________229\n_____________|________________________________________________________________________________________|\n5'-GUG...AUGUC__AA_____G__AACCAC__________AUAUCA________GGCA_______AAA___AUGAAAUAUUCCUU_______________GGUAC...AUC-3'\n______________CG__GGCAC_CA______UCUUGGC_GC______CCGUAAAU____GUGA_GA___GCA______________AGGGC_CAGUGCUGU\n______________||__::|||_||______|||||||_||______||||||||____:|||_||___:||______________|||||_|||::||||\n______________GC__UUGUG_GU______AGAACCG_CG______GGCAUUUA____UACU_CU___UGU______________UCCCG_GUCGUGACA\n3'-UUU...AUGAC__GG________CCCUUU_______A__C_____________AUAA____A__CAA______________________U_________AAAAG...GUG-5'\n_____________|________________________________________________________________________________________|\n_____________83_______________________________________________________________________________________14\n |
177 -- 183 |
48 -- 54 |
-52.1529 kcal/mol |
19.8598 kcal/mol |
22.1763 kcal/mol |
143 229@LB@ | |@LB@5'-GUG...AUGUC AA G AACCAC AUAUCA GGCA AAA AUGAAAUAUUCCUU GGUAC...AUC-3'@LB@ CG GGCAC CA UCUUGGC GC CCGUAAAU GUGA GA GCA AGGGC CAGUGCUGU@LB@ || ::||| || ||||||| || |||||||| :||| || :|| ||||| |||::||||@LB@ GC UUGUG GU AGAACCG CG GGCAUUUA UACU CU UGU UCCCG GUCGUGACA@LB@3'-UUU...AUGAC GG CCCUUU A C AUAA A CAA U AAAAG...GUG-5'@LB@ | |@LB@ 83 14@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -52.1529 kcal/mol@LB@Unfolding Energy - mRNA 19.8598 kcal/mol@LB@Unfolding Energy - sRNA 22.1763 kcal/mol@LB@@LB@Position - mRNA 144 -- 228@LB@Position - sRNA 15 -- 82@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 190 |
0.01143 |
0.2119 |
b3233 |
yhcB |
-11.72 |
0.064941 |
161 -- 178 |
66 -- 81 |
DUF1043 family inner membrane-anchored protein |
|
_____________160________________179\n_____________|__________________|\n5'-UUU...CUGAA_________CUAC_____CAAAA...CGU-3'\n______________GCCAACACC____GGAAA\n______________|||||||||____|||||\n______________CGGUUGUGG____CCUUU\n3'-UUU...UGACG_________UC_______AGAAC...GUG-5'\n_____________|__________________|\n_____________82_________________65\n |
163 -- 169 |
73 -- 79 |
-21.1167 kcal/mol |
2.37182 kcal/mol |
7.0207 kcal/mol |
160 179@LB@ | |@LB@5'-UUU...CUGAA CUAC CAAAA...CGU-3'@LB@ GCCAACACC GGAAA@LB@ ||||||||| |||||@LB@ CGGUUGUGG CCUUU@LB@3'-UUU...UGACG UC AGAAC...GUG-5'@LB@ | |@LB@ 82 65@LB@@LB@@LB@Energy -11.72 kcal/mol@LB@Hybridization Energy -21.1167 kcal/mol@LB@Unfolding Energy - mRNA 2.37182 kcal/mol@LB@Unfolding Energy - sRNA 7.0207 kcal/mol@LB@@LB@Position - mRNA 161 -- 178@LB@Position - sRNA 66 -- 81@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 73 -- 79@LB@ |
| 140 |
0.008117 |
0.2031 |
b3221 |
yhcH |
-13.19 |
0.033484 |
158 -- 212 |
34 -- 73 |
DUF386 family protein cupin superfamily |
|
_____________157_____________________________________________________213\n_____________|_______________________________________________________|\n5'-AUC...UGAUG____UUUAC__GG___________UGGCCCAGGGAGAA_______G_________GAAGU...AAG-3'\n______________CAGG_____UU__GGCUGCGCUGU______________AAAUUAU_AUGAUGGGU\n______________||||_____|:__||||||||:||______________|||||||_||||||:||\n______________GUCC_____AG__CCGACGCGGCA______________UUUAAUA_UACUACUCA\n3'-UUU...UUGUG____CUUU___AA________________________________A_________AUGUU...GUG-5'\n_____________|_______________________________________________________|\n_____________74______________________________________________________33\n |
206 -- 212 |
34 -- 40 |
-41.3429 kcal/mol |
18.8865 kcal/mol |
9.26614 kcal/mol |
157 213@LB@ | |@LB@5'-AUC...UGAUG UUUAC GG UGGCCCAGGGAGAA G GAAGU...AAG-3'@LB@ CAGG UU GGCUGCGCUGU AAAUUAU AUGAUGGGU@LB@ |||| |: ||||||||:|| ||||||| ||||||:||@LB@ GUCC AG CCGACGCGGCA UUUAAUA UACUACUCA@LB@3'-UUU...UUGUG CUUU AA A AUGUU...GUG-5'@LB@ | |@LB@ 74 33@LB@@LB@@LB@Energy -13.19 kcal/mol@LB@Hybridization Energy -41.3429 kcal/mol@LB@Unfolding Energy - mRNA 18.8865 kcal/mol@LB@Unfolding Energy - sRNA 9.26614 kcal/mol@LB@@LB@Position - mRNA 158 -- 212@LB@Position - sRNA 34 -- 73@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 153 |
0.009069 |
0.2059 |
b3529 |
yhjK |
-8.15 |
0.299018 |
186 -- 212 |
47 -- 74 |
cyclic-di-GMP phosphodiesterase |
|
_____________185__________________________213\n_____________|____________________________|\n5'-AGC...GAUUU_________GACAAU_____________CGCUC...AUC-3'\n______________CCGGGGGGA______UUGCG_CGUAAGU\n______________||:|||::|______:||||_|||||:|\n______________GGUCCCUUU______GACGC_GCAUUUA\n3'-UUU...GUUGU_________AGAACC_____G_______AUAAU...GUG-5'\n_____________|____________________________|\n_____________75___________________________46\n |
187 -- 193 |
67 -- 73 |
-27.1977 kcal/mol |
10.2409 kcal/mol |
8.80319 kcal/mol |
185 213@LB@ | |@LB@5'-AGC...GAUUU GACAAU CGCUC...AUC-3'@LB@ CCGGGGGGA UUGCG CGUAAGU@LB@ ||:|||::| :|||| |||||:|@LB@ GGUCCCUUU GACGC GCAUUUA@LB@3'-UUU...GUUGU AGAACC G AUAAU...GUG-5'@LB@ | |@LB@ 75 46@LB@@LB@@LB@Energy -8.15 kcal/mol@LB@Hybridization Energy -27.1977 kcal/mol@LB@Unfolding Energy - mRNA 10.2409 kcal/mol@LB@Unfolding Energy - sRNA 8.80319 kcal/mol@LB@@LB@Position - mRNA 186 -- 212@LB@Position - sRNA 47 -- 74@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 158 |
0.009324 |
0.2062 |
b3574 |
yiaJ |
-10.56 |
0.109206 |
175 -- 190 |
70 -- 85 |
transcriptional repressor for the yiaKLMNO-lyxK-sgbHUE operon |
|
_____________174______________191\n_____________|________________|\n5'-CCC...ACACU________C_______ACGCG...UUG-3'\n______________UUGCGCUA_CAUCAGG\n______________:|||||:|_||:||||\n______________GACGCGGU_GUGGUCC\n3'-UUU...CUUAU________U_______CUUUA...GUG-5'\n_____________|________________|\n_____________86_______________69\n |
184 -- 190 |
70 -- 76 |
-22.9924 kcal/mol |
5.16069 kcal/mol |
7.27689 kcal/mol |
174 191@LB@ | |@LB@5'-CCC...ACACU C ACGCG...UUG-3'@LB@ UUGCGCUA CAUCAGG@LB@ :|||||:| ||:||||@LB@ GACGCGGU GUGGUCC@LB@3'-UUU...CUUAU U CUUUA...GUG-5'@LB@ | |@LB@ 86 69@LB@@LB@@LB@Energy -10.56 kcal/mol@LB@Hybridization Energy -22.9924 kcal/mol@LB@Unfolding Energy - mRNA 5.16069 kcal/mol@LB@Unfolding Energy - sRNA 7.27689 kcal/mol@LB@@LB@Position - mRNA 175 -- 190@LB@Position - sRNA 70 -- 85@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 80 |
0.004451 |
0.1855 |
b3578 |
yiaN |
-12.19 |
0.052777 |
198 -- 212 |
52 -- 66 |
2 3-diketo-L-gulonate TRAP transporter large permease protein |
|
_____________197_____________213\n_____________|_______________|\n5'-GGC...GCUUA___A___________AUUUU...UCU-3'\n______________AUC_UGGCUGUGCUG\n______________|||_||||||:||:|\n______________UAG_ACCGACGCGGC\n3'-UUU...CCCUU___A___________AUUUA...GUG-5'\n_____________|_______________|\n_____________67______________51\n |
206 -- 212 |
52 -- 58 |
-22.6247 kcal/mol |
3.67694 kcal/mol |
6.76246 kcal/mol |
197 213@LB@ | |@LB@5'-GGC...GCUUA A AUUUU...UCU-3'@LB@ AUC UGGCUGUGCUG@LB@ ||| ||||||:||:|@LB@ UAG ACCGACGCGGC@LB@3'-UUU...CCCUU A AUUUA...GUG-5'@LB@ | |@LB@ 67 51@LB@@LB@@LB@Energy -12.19 kcal/mol@LB@Hybridization Energy -22.6247 kcal/mol@LB@Unfolding Energy - mRNA 3.67694 kcal/mol@LB@Unfolding Energy - sRNA 6.76246 kcal/mol@LB@@LB@Position - mRNA 198 -- 212@LB@Position - sRNA 52 -- 66@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 62 |
0.003053 |
0.1727 |
b3812 |
yigB |
-11.80 |
0.062766 |
182 -- 199 |
65 -- 83 |
5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis |
|
_____________181_________________200\n_____________|___________________|\n5'-CUG...UCCAC__________G________AAUGC...GAG-3'\n______________GCGCCAA_AC_GGGGAAAU\n______________|||||||_||_:|||||||\n______________CGCGGUU_UG_UCCCUUUA\n3'-UUU...UAUGA_______G__G________GAACC...GUG-5'\n_____________|___________________|\n_____________84__________________64\n |
193 -- 199 |
65 -- 71 |
-28.1563 kcal/mol |
8.99645 kcal/mol |
7.35968 kcal/mol |
181 200@LB@ | |@LB@5'-CUG...UCCAC G AAUGC...GAG-3'@LB@ GCGCCAA AC GGGGAAAU@LB@ ||||||| || :|||||||@LB@ CGCGGUU UG UCCCUUUA@LB@3'-UUU...UAUGA G G GAACC...GUG-5'@LB@ | |@LB@ 84 64@LB@@LB@@LB@Energy -11.80 kcal/mol@LB@Hybridization Energy -28.1563 kcal/mol@LB@Unfolding Energy - mRNA 8.99645 kcal/mol@LB@Unfolding Energy - sRNA 7.35968 kcal/mol@LB@@LB@Position - mRNA 182 -- 199@LB@Position - sRNA 65 -- 83@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 65 -- 71@LB@ |
| 127 |
0.007097 |
0.1961 |
b4065 |
yjcE |
-10.62 |
0.105957 |
81 -- 91 |
51 -- 62 |
putative cation/proton antiporter |
|
_____________80___________92\n_____________|____________|\n5'-UAU...GGCAA____________UUUUA...UGC-3'\n______________UGGCUGC_CCGU\n______________|||||||_||||\n______________ACCGACG_GGCA\n3'-UUU...UUAGA_______C____UUUAA...GUG-5'\n_____________|____________|\n_____________63___________50\n |
81 -- 87 |
56 -- 62 |
-18.8543 kcal/mol |
3.34811 kcal/mol |
4.8826 kcal/mol |
80 92@LB@ | |@LB@5'-UAU...GGCAA UUUUA...UGC-3'@LB@ UGGCUGC CCGU@LB@ ||||||| ||||@LB@ ACCGACG GGCA@LB@3'-UUU...UUAGA C UUUAA...GUG-5'@LB@ | |@LB@ 63 50@LB@@LB@@LB@Energy -10.62 kcal/mol@LB@Hybridization Energy -18.8543 kcal/mol@LB@Unfolding Energy - mRNA 3.34811 kcal/mol@LB@Unfolding Energy - sRNA 4.8826 kcal/mol@LB@@LB@Position - mRNA 81 -- 91@LB@Position - sRNA 51 -- 62@LB@Position Seed - mRNA 81 -- 87@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 163 |
0.009572 |
0.2068 |
b4126 |
yjdI |
-8.84 |
0.226749 |
182 -- 194 |
26 -- 41 |
putative 4Fe-4S mono-cluster protein |
|
_____________181______________195\n_____________|________________|\n5'-UAG...CAUAC_______A________AAGGU...GCG-3'\n______________UGAUGAG____GAGGG\n______________|||||||____:||||\n______________ACUACUC____UUCCC\n3'-UUU...AUAAU_______AAUG_____GUGUC...GUG-5'\n_____________|________________|\n_____________42_______________25\n |
182 -- 188 |
35 -- 41 |
-13.4129 kcal/mol |
1.87738 kcal/mol |
2.69216 kcal/mol |
181 195@LB@ | |@LB@5'-UAG...CAUAC A AAGGU...GCG-3'@LB@ UGAUGAG GAGGG@LB@ ||||||| :||||@LB@ ACUACUC UUCCC@LB@3'-UUU...AUAAU AAUG GUGUC...GUG-5'@LB@ | |@LB@ 42 25@LB@@LB@@LB@Energy -8.84 kcal/mol@LB@Hybridization Energy -13.4129 kcal/mol@LB@Unfolding Energy - mRNA 1.87738 kcal/mol@LB@Unfolding Energy - sRNA 2.69216 kcal/mol@LB@@LB@Position - mRNA 182 -- 194@LB@Position - sRNA 26 -- 41@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 82 |
0.004565 |
0.1855 |
b4144 |
yjeI |
-10.12 |
0.132253 |
163 -- 240 |
1 -- 93 |
DUF4156 family lipoprotein |
|
_____________162_____________________________________________________________________________________________________241\n_____________|_______________________________________________________________________________________________________|\n5'-GCA...GACGA_____________U_________UUGAUUAU_______AACA_____A_______A________________UUA____G_______________U_______UACUG...GCA-3'\n______________CGCGAGUG__GCG_CCAGC_UCA________GGGGAAU______UGC__CGUAAA______________UAC____GCA_GG_AUUG____UCGG_GCCGCGC\n______________|||||:|:__|||_|||:|_:||________|||:|||______|||__||||||______________|||____|||_:|_|:||____||:|_|||||:|\n______________GCGCUUAU__CGC_GGUUG_GGU________CCCUUUA______ACG__GCAUUU______________AUG____CGU_UC_UGAC____AGUC_CGGCGUG\n3'-UUU...CCCAC________GA_________U__________________GAACCG___CG______AAUAAUACUACUCA___UUCC___G__G____AAAA____________-5'\n_____________|______________________________________________________________________________________________________|\n_____________94_____________________________________________________________________________________________________1\n |
234 -- 240 |
1 -- 7 |
-61.0049 kcal/mol |
21.8834 kcal/mol |
29.0051 kcal/mol |
162 241@LB@ | |@LB@5'-GCA...GACGA U UUGAUUAU AACA A A UUA G U UACUG...GCA-3'@LB@ CGCGAGUG GCG CCAGC UCA GGGGAAU UGC CGUAAA UAC GCA GG AUUG UCGG GCCGCGC@LB@ |||||:|: ||| |||:| :|| |||:||| ||| |||||| ||| ||| :| |:|| ||:| |||||:|@LB@ GCGCUUAU CGC GGUUG GGU CCCUUUA ACG GCAUUU AUG CGU UC UGAC AGUC CGGCGUG@LB@3'-UUU...CCCAC GA U GAACCG CG AAUAAUACUACUCA UUCC G G AAAA -5'@LB@ | |@LB@ 94 1@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -61.0049 kcal/mol@LB@Unfolding Energy - mRNA 21.8834 kcal/mol@LB@Unfolding Energy - sRNA 29.0051 kcal/mol@LB@@LB@Position - mRNA 163 -- 240@LB@Position - sRNA 1 -- 93@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 1 -- 7@LB@ |
