180 |
0.01774 |
0.3104 |
b0593 |
entC |
-14.03 |
0.023631 |
112 -- 128 |
4 -- 19 |
isochorismate synthase 1 |
|
_____________111_______________129\n_____________|_________________|\n5'-GGC...AGAGU_____U___________GCUUU...CAG-3'\n______________UGACA_AGUGCGCGUUU\n______________|:|||_|:|||||||:|\n______________AUUGU_UUACGCGCAGA\n3'-UUU...CUACU_________________AAG-5'\n_____________|_________________|\n_____________20________________3\n |
122 -- 128 |
4 -- 10 |
-18.4725 kcal/mol |
3.19872 kcal/mol |
1.2406 kcal/mol |
111 129@LB@ | |@LB@5'-GGC...AGAGU U GCUUU...CAG-3'@LB@ UGACA AGUGCGCGUUU@LB@ |:||| |:|||||||:|@LB@ AUUGU UUACGCGCAGA@LB@3'-UUU...CUACU AAG-5'@LB@ | |@LB@ 20 3@LB@@LB@@LB@Energy -14.03 kcal/mol@LB@Hybridization Energy -18.4725 kcal/mol@LB@Unfolding Energy - mRNA 3.19872 kcal/mol@LB@Unfolding Energy - sRNA 1.2406 kcal/mol@LB@@LB@Position - mRNA 112 -- 128@LB@Position - sRNA 4 -- 19@LB@Position Seed - mRNA 122 -- 128@LB@Position Seed - sRNA 4 -- 10@LB@ |
181 |
0.01793 |
0.3104 |
b1594 |
mlc |
-11.10 |
0.078496 |
11 -- 37 |
1 -- 18 |
glucosamine anaerobic growth regulon transcriptional repressor; autorepressor |
|
_____________10__________________________38\n_____________|___________________________|\n5'-AAA...UCAUG______GUCCGGC_______AA_____GUAUU...GUA-3'\n______________AACAAA_______UGCGCGU__CUUUC\n______________||||||_______|||||||__|||||\n______________UUGUUU_______ACGCGCA__GAAAG\n3'-UUU...UACUA___________________________-5'\n_____________|__________________________|\n_____________19_________________________1\n |
24 -- 30 |
6 -- 12 |
-16.8416 kcal/mol |
4.49753 kcal/mol |
1.24077 kcal/mol |
10 38@LB@ | |@LB@5'-AAA...UCAUG GUCCGGC AA GUAUU...GUA-3'@LB@ AACAAA UGCGCGU CUUUC@LB@ |||||| ||||||| |||||@LB@ UUGUUU ACGCGCA GAAAG@LB@3'-UUU...UACUA -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -11.10 kcal/mol@LB@Hybridization Energy -16.8416 kcal/mol@LB@Unfolding Energy - mRNA 4.49753 kcal/mol@LB@Unfolding Energy - sRNA 1.24077 kcal/mol@LB@@LB@Position - mRNA 11 -- 37@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 6 -- 12@LB@ |
182 |
0.01795 |
0.3104 |
b0403 |
malZ |
-8.22 |
0.235274 |
180 -- 211 |
10 -- 46 |
maltodextrin glucosidase |
|
_____________179_____________________________________212\n_____________|_______________________________________|\n5'-UUU...CAGAU_______A_____________AAUU______U_______AUGGC...AGC-3'\n______________UUUCAUC________CAGGGG____AUGAUG_UAAAUGC\n______________|||||||________|||||:____|||||:_:||||||\n______________AAAGUAG________GUCCCU____UACUAU_GUUUACG\n3'-UUU...GUUUU_______AGACUUAA______AC________U_______CGCAG...AAG-5'\n_____________|_______________________________________|\n_____________47______________________________________9\n |
205 -- 211 |
10 -- 16 |
-25.6812 kcal/mol |
8.00905 kcal/mol |
9.44998 kcal/mol |
179 212@LB@ | |@LB@5'-UUU...CAGAU A AAUU U AUGGC...AGC-3'@LB@ UUUCAUC CAGGGG AUGAUG UAAAUGC@LB@ ||||||| |||||: |||||: :||||||@LB@ AAAGUAG GUCCCU UACUAU GUUUACG@LB@3'-UUU...GUUUU AGACUUAA AC U CGCAG...AAG-5'@LB@ | |@LB@ 47 9@LB@@LB@@LB@Energy -8.22 kcal/mol@LB@Hybridization Energy -25.6812 kcal/mol@LB@Unfolding Energy - mRNA 8.00905 kcal/mol@LB@Unfolding Energy - sRNA 9.44998 kcal/mol@LB@@LB@Position - mRNA 180 -- 211@LB@Position - sRNA 10 -- 46@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 10 -- 16@LB@ |
184 |
0.01824 |
0.3104 |
b2055 |
wcaE |
-6.17 |
0.461247 |
221 -- 230 |
4 -- 12 |
putative glycosyl transferase |
|
_____________220________231\n_____________|__________|\n5'-ACU...AUCAC__U_______CGUAA...GCU-3'\n______________UG_CGCGUUU\n______________||_|||||:|\n______________AC_GCGCAGA\n3'-UUU...UGUUU__________AAG-5'\n_____________|__________|\n_____________13_________3\n |
224 -- 230 |
4 -- 10 |
-10.1102 kcal/mol |
2.78254 kcal/mol |
1.16019 kcal/mol |
220 231@LB@ | |@LB@5'-ACU...AUCAC U CGUAA...GCU-3'@LB@ UG CGCGUUU@LB@ || |||||:|@LB@ AC GCGCAGA@LB@3'-UUU...UGUUU AAG-5'@LB@ | |@LB@ 13 3@LB@@LB@@LB@Energy -6.17 kcal/mol@LB@Hybridization Energy -10.1102 kcal/mol@LB@Unfolding Energy - mRNA 2.78254 kcal/mol@LB@Unfolding Energy - sRNA 1.16019 kcal/mol@LB@@LB@Position - mRNA 221 -- 230@LB@Position - sRNA 4 -- 12@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 4 -- 10@LB@ |
185 |
0.01831 |
0.3104 |
b3164 |
pnp |
-7.42 |
0.310961 |
131 -- 137 |
8 -- 14 |
polynucleotide phosphorylase/polyadenylase |
|
_____________130_____138\n_____________|_______|\n5'-AGC...GCGAG_______AGAAG...UUA-3'\n______________GAUGCGC\n______________:||||||\n______________UUACGCG\n3'-UUU...AUUGU_______CAGAAAG-5'\n_____________|_______|\n_____________15______7\n |
131 -- 137 |
8 -- 14 |
-10.1419 kcal/mol |
2.24272 kcal/mol |
0.481462 kcal/mol |
130 138@LB@ | |@LB@5'-AGC...GCGAG AGAAG...UUA-3'@LB@ GAUGCGC@LB@ :||||||@LB@ UUACGCG@LB@3'-UUU...AUUGU CAGAAAG-5'@LB@ | |@LB@ 15 7@LB@@LB@@LB@Energy -7.42 kcal/mol@LB@Hybridization Energy -10.1419 kcal/mol@LB@Unfolding Energy - mRNA 2.24272 kcal/mol@LB@Unfolding Energy - sRNA 0.481462 kcal/mol@LB@@LB@Position - mRNA 131 -- 137@LB@Position - sRNA 8 -- 14@LB@Position Seed - mRNA 131 -- 137@LB@Position Seed - sRNA 8 -- 14@LB@ |
186 |
0.01836 |
0.3104 |
b3521 |
yhjC |
-9.62 |
0.140197 |
158 -- 166 |
5 -- 13 |
LysR family putative transcriptional regulator |
|
_____________157_______167\n_____________|_________|\n5'-UUU...GCGAU_________ACUGU...UUU-3'\n______________AUGCGCGUU\n______________||||||||:\n______________UACGCGCAG\n3'-UUU...UUGUU_________AAAG-5'\n_____________|_________|\n_____________14________4\n |
160 -- 166 |
5 -- 11 |
-14.2497 kcal/mol |
3.47777 kcal/mol |
1.15134 kcal/mol |
157 167@LB@ | |@LB@5'-UUU...GCGAU ACUGU...UUU-3'@LB@ AUGCGCGUU@LB@ ||||||||:@LB@ UACGCGCAG@LB@3'-UUU...UUGUU AAAG-5'@LB@ | |@LB@ 14 4@LB@@LB@@LB@Energy -9.62 kcal/mol@LB@Hybridization Energy -14.2497 kcal/mol@LB@Unfolding Energy - mRNA 3.47777 kcal/mol@LB@Unfolding Energy - sRNA 1.15134 kcal/mol@LB@@LB@Position - mRNA 158 -- 166@LB@Position - sRNA 5 -- 13@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 5 -- 11@LB@ |
187 |
0.01837 |
0.3104 |
b2151 |
galS |
-10.59 |
0.096282 |
222 -- 228 |
5 -- 11 |
galactose- and fucose-inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor |
|
_____________221_____229\n_____________|_______|\n5'-UCU...AUGUA_______AGGCU...GUG-3'\n______________GCGCGUC\n______________|||||||\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
222 -- 228 |
5 -- 11 |
-14.6299 kcal/mol |
2.93004 kcal/mol |
1.11145 kcal/mol |
221 229@LB@ | |@LB@5'-UCU...AUGUA AGGCU...GUG-3'@LB@ GCGCGUC@LB@ |||||||@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -10.59 kcal/mol@LB@Hybridization Energy -14.6299 kcal/mol@LB@Unfolding Energy - mRNA 2.93004 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 222 -- 228@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 5 -- 11@LB@ |
188 |
0.0185 |
0.3104 |
b3364 |
tsgA |
-7.52 |
0.300608 |
282 -- 299 |
12 -- 29 |
putative transporter |
|
_____________281________________300\n_____________|__________________|\n5'-CCA...UCACC_____________G____A-3'\n______________GGGAUGGUGAUGG_AAAU\n______________||||||:||||::_||||\n______________CCCUACUACUAUU_UUUA\n3'-UUU...UAAGU_____________G____CGCGC...AAG-5'\n_____________|__________________|\n_____________30_________________11\n |
282 -- 288 |
23 -- 29 |
-23.3156 kcal/mol |
8.39977 kcal/mol |
7.39774 kcal/mol |
281 300@LB@ | |@LB@5'-CCA...UCACC G A-3'@LB@ GGGAUGGUGAUGG AAAU@LB@ ||||||:||||:: ||||@LB@ CCCUACUACUAUU UUUA@LB@3'-UUU...UAAGU G CGCGC...AAG-5'@LB@ | |@LB@ 30 11@LB@@LB@@LB@Energy -7.52 kcal/mol@LB@Hybridization Energy -23.3156 kcal/mol@LB@Unfolding Energy - mRNA 8.39977 kcal/mol@LB@Unfolding Energy - sRNA 7.39774 kcal/mol@LB@@LB@Position - mRNA 282 -- 299@LB@Position - sRNA 12 -- 29@LB@Position Seed - mRNA 282 -- 288@LB@Position Seed - sRNA 23 -- 29@LB@ |
189 |
0.01853 |
0.3104 |
b3743 |
asnC |
-7.74 |
0.278830 |
255 -- 266 |
5 -- 18 |
transcriptional activator of asnA; autorepressor |
|
_____________254____________267\n_____________|______________|\n5'-AUU...UAAUG______________ACCGC...GCG-3'\n______________GGC_AAUGCGCG_C\n______________::|_||||||||_|\n______________UUG_UUACGCGC_G\n3'-UUU...UACUA___U________A_AAAG-5'\n_____________|______________|\n_____________19_____________4\n |
259 -- 265 |
7 -- 13 |
-14.4034 kcal/mol |
5.44099 kcal/mol |
1.2243 kcal/mol |
254 267@LB@ | |@LB@5'-AUU...UAAUG ACCGC...GCG-3'@LB@ GGC AAUGCGCG C@LB@ ::| |||||||| |@LB@ UUG UUACGCGC G@LB@3'-UUU...UACUA U A AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -7.74 kcal/mol@LB@Hybridization Energy -14.4034 kcal/mol@LB@Unfolding Energy - mRNA 5.44099 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 255 -- 266@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 7 -- 13@LB@ |
190 |
0.01867 |
0.3104 |
b0196 |
rcsF |
-10.27 |
0.109081 |
201 -- 211 |
2 -- 13 |
putative outer membrane protein |
|
_____________200__________212\n_____________|____________|\n5'-AAU...AUACU____________ACCGA...AGC-3'\n______________AUGCGUG_CUUU\n______________|||||:|_||||\n______________UACGCGC_GAAA\n3'-UUU...UUGUU_______A____G-5'\n_____________|____________|\n_____________14___________1\n |
201 -- 207 |
7 -- 13 |
-12.8527 kcal/mol |
1.40833 kcal/mol |
1.17421 kcal/mol |
200 212@LB@ | |@LB@5'-AAU...AUACU ACCGA...AGC-3'@LB@ AUGCGUG CUUU@LB@ |||||:| ||||@LB@ UACGCGC GAAA@LB@3'-UUU...UUGUU A G-5'@LB@ | |@LB@ 14 1@LB@@LB@@LB@Energy -10.27 kcal/mol@LB@Hybridization Energy -12.8527 kcal/mol@LB@Unfolding Energy - mRNA 1.40833 kcal/mol@LB@Unfolding Energy - sRNA 1.17421 kcal/mol@LB@@LB@Position - mRNA 201 -- 211@LB@Position - sRNA 2 -- 13@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 7 -- 13@LB@ |