171 |
0.01687 |
0.3104 |
b1512 |
lsrR |
-11.43 |
0.068975 |
231 -- 262 |
7 -- 31 |
lsr operon transcriptional repressor |
b4295 |
_____________230______________________________263\n_____________|________________________________|\n5'-GCU...CAGAA______AUGUG___A__AG_______C_____GAUCG...AGA-3'\n______________CAGGGA_____UGA_GA__AACAGGU_GCGCG\n______________||||||_____|||_||__||||::|_|||||\n______________GUCCCU_____ACU_CU__UUGUUUA_CGCGC\n3'-UUU...CUUAA______________A__A______________AGAAAG-5'\n_____________|________________________________|\n_____________32_______________________________6\n |
250 -- 256 |
12 -- 18 |
-27.0439 kcal/mol |
7.86672 kcal/mol |
7.75103 kcal/mol |
230 263@LB@ | |@LB@5'-GCU...CAGAA AUGUG A AG C GAUCG...AGA-3'@LB@ CAGGGA UGA GA AACAGGU GCGCG@LB@ |||||| ||| || ||||::| |||||@LB@ GUCCCU ACU CU UUGUUUA CGCGC@LB@3'-UUU...CUUAA A A AGAAAG-5'@LB@ | |@LB@ 32 6@LB@@LB@@LB@Energy -11.43 kcal/mol@LB@Hybridization Energy -27.0439 kcal/mol@LB@Unfolding Energy - mRNA 7.86672 kcal/mol@LB@Unfolding Energy - sRNA 7.75103 kcal/mol@LB@@LB@Position - mRNA 231 -- 262@LB@Position - sRNA 7 -- 31@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 12 -- 18@LB@ |
172 |
0.01719 |
0.3104 |
b0678 |
nagB |
-13.42 |
0.030481 |
5 -- 26 |
1 -- 17 |
glucosamine-6-phosphate deaminase |
|
_____________4______________________27\n_____________|______________________|\n_______5'-UAUC______UAAAC___________GUGAG...GUC-3'\n______________GCAAAU_____GCGUGUCUUUU\n______________:|||||_____|||:||||||:\n______________UGUUUA_____CGCGCAGAAAG\n3'-UUU...ACUAU______________________-5'\n_____________|_____________________|\n_____________18____________________1\n |
20 -- 26 |
1 -- 7 |
-18.2092 kcal/mol |
3.54695 kcal/mol |
1.23994 kcal/mol |
4 27@LB@ | |@LB@ 5'-UAUC UAAAC GUGAG...GUC-3'@LB@ GCAAAU GCGUGUCUUUU@LB@ :||||| |||:||||||:@LB@ UGUUUA CGCGCAGAAAG@LB@3'-UUU...ACUAU -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -13.42 kcal/mol@LB@Hybridization Energy -18.2092 kcal/mol@LB@Unfolding Energy - mRNA 3.54695 kcal/mol@LB@Unfolding Energy - sRNA 1.23994 kcal/mol@LB@@LB@Position - mRNA 5 -- 26@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 1 -- 7@LB@ |
173 |
0.0173 |
0.3104 |
b0145 |
dksA |
-10.49 |
0.099910 |
175 -- 187 |
5 -- 21 |
transcriptional regulator of rRNA transcription; DnaK suppressor protein |
|
_____________174_______________188\n_____________|_________________|\n5'-AAU...GGAUC_________________AAGGA...AUG-3'\n______________GAUA____GUGCGUGUU\n______________||||____:||||:||:\n______________CUAU____UACGCGCAG\n3'-UUU...UACUA____UGUU_________AAAG-5'\n_____________|_________________|\n_____________22________________4\n |
181 -- 187 |
5 -- 11 |
-14.603 kcal/mol |
2.85898 kcal/mol |
1.24955 kcal/mol |
174 188@LB@ | |@LB@5'-AAU...GGAUC AAGGA...AUG-3'@LB@ GAUA GUGCGUGUU@LB@ |||| :||||:||:@LB@ CUAU UACGCGCAG@LB@3'-UUU...UACUA UGUU AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -14.603 kcal/mol@LB@Unfolding Energy - mRNA 2.85898 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 175 -- 187@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 5 -- 11@LB@ |
174 |
0.01734 |
0.3104 |
b3470 |
tusA |
-9.03 |
0.174990 |
268 -- 281 |
8 -- 22 |
mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase |
|
_____________267_____________282\n_____________|_______________|\n5'-CAU...ACCGG_______________AAAAC...UGC-3'\n______________UGAUGAU_GGUGCGC\n______________||||:|:_::|||||\n______________ACUAUUG_UUACGCG\n3'-UUU...CUACU_______U_______CAGAAAG-5'\n_____________|_______________|\n_____________23______________7\n |
275 -- 281 |
8 -- 14 |
-15.1295 kcal/mol |
4.85785 kcal/mol |
1.23838 kcal/mol |
267 282@LB@ | |@LB@5'-CAU...ACCGG AAAAC...UGC-3'@LB@ UGAUGAU GGUGCGC@LB@ ||||:|: ::|||||@LB@ ACUAUUG UUACGCG@LB@3'-UUU...CUACU U CAGAAAG-5'@LB@ | |@LB@ 23 7@LB@@LB@@LB@Energy -9.03 kcal/mol@LB@Hybridization Energy -15.1295 kcal/mol@LB@Unfolding Energy - mRNA 4.85785 kcal/mol@LB@Unfolding Energy - sRNA 1.23838 kcal/mol@LB@@LB@Position - mRNA 268 -- 281@LB@Position - sRNA 8 -- 22@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 8 -- 14@LB@ |
175 |
0.01743 |
0.3104 |
b0921 |
smtA |
-12.81 |
0.039244 |
146 -- 164 |
2 -- 20 |
putative S-adenosyl-L-methionine-dependent methyltransferase |
|
_____________145_________________165\n_____________|___________________|\n5'-AUC...UGGCU________AUA________AUCAG...AUC-3'\n______________GUGACAAA___GCGUCUUU\n______________:|:|||||___||||||||\n______________UAUUGUUU___CGCAGAAA\n3'-UUU...ACUAC________ACG________G-5'\n_____________|___________________|\n_____________21__________________1\n |
158 -- 164 |
2 -- 8 |
-18.7664 kcal/mol |
4.69909 kcal/mol |
1.25604 kcal/mol |
145 165@LB@ | |@LB@5'-AUC...UGGCU AUA AUCAG...AUC-3'@LB@ GUGACAAA GCGUCUUU@LB@ :|:||||| ||||||||@LB@ UAUUGUUU CGCAGAAA@LB@3'-UUU...ACUAC ACG G-5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -12.81 kcal/mol@LB@Hybridization Energy -18.7664 kcal/mol@LB@Unfolding Energy - mRNA 4.69909 kcal/mol@LB@Unfolding Energy - sRNA 1.25604 kcal/mol@LB@@LB@Position - mRNA 146 -- 164@LB@Position - sRNA 2 -- 20@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 2 -- 8@LB@ |
176 |
0.01748 |
0.3104 |
b0435 |
bolA |
-9.78 |
0.131850 |
202 -- 220 |
4 -- 22 |
stationary-phase morphogene transcriptional repressor for mreB; also regulator for dacA dacC and ampC |
|
_____________201_________________221\n_____________|___________________|\n5'-UGA...UUUCA________C___A___GA_AGAAG...CCG-3'\n______________UGAUGAUA_GUG_GCG__U\n______________||||:|:|_:||_|||__|\n______________ACUAUUGU_UAC_CGC__A\n3'-UUU...CUACU________U___G___AG_AAG-5'\n_____________|___________________|\n_____________23__________________3\n |
203 -- 209 |
15 -- 21 |
-14.8727 kcal/mol |
3.8346 kcal/mol |
1.2572 kcal/mol |
201 221@LB@ | |@LB@5'-UGA...UUUCA C A GA AGAAG...CCG-3'@LB@ UGAUGAUA GUG GCG U@LB@ ||||:|:| :|| ||| |@LB@ ACUAUUGU UAC CGC A@LB@3'-UUU...CUACU U G AG AAG-5'@LB@ | |@LB@ 23 3@LB@@LB@@LB@Energy -9.78 kcal/mol@LB@Hybridization Energy -14.8727 kcal/mol@LB@Unfolding Energy - mRNA 3.8346 kcal/mol@LB@Unfolding Energy - sRNA 1.2572 kcal/mol@LB@@LB@Position - mRNA 202 -- 220@LB@Position - sRNA 4 -- 22@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 15 -- 21@LB@ |
177 |
0.01751 |
0.3104 |
b2900 |
yqfB |
-9.18 |
0.165418 |
52 -- 70 |
1 -- 17 |
UPF0267 family protein |
|
_____________51__________________71\n_____________|___________________|\n5'-UUC...ACGUC________U__GCC_____CCGCC...UCA-3'\n______________ACAAAUGC_CG___CUUUU\n______________||||||||_||___||||:\n______________UGUUUACG_GC___GAAAG\n3'-UUU...ACUAU________C__A_______-5'\n_____________|__________________|\n_____________18_________________1\n |
53 -- 59 |
10 -- 16 |
-13.5578 kcal/mol |
3.13415 kcal/mol |
1.23994 kcal/mol |
51 71@LB@ | |@LB@5'-UUC...ACGUC U GCC CCGCC...UCA-3'@LB@ ACAAAUGC CG CUUUU@LB@ |||||||| || ||||:@LB@ UGUUUACG GC GAAAG@LB@3'-UUU...ACUAU C A -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -9.18 kcal/mol@LB@Hybridization Energy -13.5578 kcal/mol@LB@Unfolding Energy - mRNA 3.13415 kcal/mol@LB@Unfolding Energy - sRNA 1.23994 kcal/mol@LB@@LB@Position - mRNA 52 -- 70@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 10 -- 16@LB@ |
178 |
0.01756 |
0.3104 |
b2017 |
yefM |
-12.99 |
0.036476 |
219 -- 231 |
5 -- 18 |
antitoxin of the YoeB-YefM toxin-antitoxin system |
|
_____________218____________232\n_____________|______________|\n5'-AUU...GCUAC______________AGAAU...AUG-3'\n______________AGCGAA_GCGCGUC\n______________|:|:||_|||||||\n______________UUGUUU_CGCGCAG\n3'-UUU...UACUA______A_______AAAG-5'\n_____________|______________|\n_____________19_____________4\n |
225 -- 231 |
5 -- 11 |
-18.6086 kcal/mol |
4.39571 kcal/mol |
1.2243 kcal/mol |
218 232@LB@ | |@LB@5'-AUU...GCUAC AGAAU...AUG-3'@LB@ AGCGAA GCGCGUC@LB@ |:|:|| |||||||@LB@ UUGUUU CGCGCAG@LB@3'-UUU...UACUA A AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -12.99 kcal/mol@LB@Hybridization Energy -18.6086 kcal/mol@LB@Unfolding Energy - mRNA 4.39571 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 219 -- 231@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 5 -- 11@LB@ |
179 |
0.01766 |
0.3104 |
b0377 |
sbmA |
-9.49 |
0.147268 |
6 -- 15 |
3 -- 12 |
peptide antibiotic transporter |
b1496 |
_____________5__________16\n_____________|__________|\n______5'-GAUCC_______G__AAUCC...ACU-3'\n______________UGCGCGU_UU\n______________|||||||_||\n______________ACGCGCA_AA\n3'-UUU...UGUUU_______G__AG-5'\n_____________|__________|\n_____________13_________2\n |
6 -- 12 |
6 -- 12 |
-14.1156 kcal/mol |
3.45883 kcal/mol |
1.16529 kcal/mol |
5 16@LB@ | |@LB@ 5'-GAUCC G AAUCC...ACU-3'@LB@ UGCGCGU UU@LB@ ||||||| ||@LB@ ACGCGCA AA@LB@3'-UUU...UGUUU G AG-5'@LB@ | |@LB@ 13 2@LB@@LB@@LB@Energy -9.49 kcal/mol@LB@Hybridization Energy -14.1156 kcal/mol@LB@Unfolding Energy - mRNA 3.45883 kcal/mol@LB@Unfolding Energy - sRNA 1.16529 kcal/mol@LB@@LB@Position - mRNA 6 -- 15@LB@Position - sRNA 3 -- 12@LB@Position Seed - mRNA 6 -- 12@LB@Position Seed - sRNA 6 -- 12@LB@ |
180 |
0.01774 |
0.3104 |
b0593 |
entC |
-14.03 |
0.023631 |
112 -- 128 |
4 -- 19 |
isochorismate synthase 1 |
|
_____________111_______________129\n_____________|_________________|\n5'-GGC...AGAGU_____U___________GCUUU...CAG-3'\n______________UGACA_AGUGCGCGUUU\n______________|:|||_|:|||||||:|\n______________AUUGU_UUACGCGCAGA\n3'-UUU...CUACU_________________AAG-5'\n_____________|_________________|\n_____________20________________3\n |
122 -- 128 |
4 -- 10 |
-18.4725 kcal/mol |
3.19872 kcal/mol |
1.2406 kcal/mol |
111 129@LB@ | |@LB@5'-GGC...AGAGU U GCUUU...CAG-3'@LB@ UGACA AGUGCGCGUUU@LB@ |:||| |:|||||||:|@LB@ AUUGU UUACGCGCAGA@LB@3'-UUU...CUACU AAG-5'@LB@ | |@LB@ 20 3@LB@@LB@@LB@Energy -14.03 kcal/mol@LB@Hybridization Energy -18.4725 kcal/mol@LB@Unfolding Energy - mRNA 3.19872 kcal/mol@LB@Unfolding Energy - sRNA 1.2406 kcal/mol@LB@@LB@Position - mRNA 112 -- 128@LB@Position - sRNA 4 -- 19@LB@Position Seed - mRNA 122 -- 128@LB@Position Seed - sRNA 4 -- 10@LB@ |