| 163 |
0.008532 |
0.1864 |
stm3093 |
endA |
-16.58 |
0.065141 |
135 -- 160 |
72 -- 101 |
deoxyribonuclease I |
|
_____________134___________________________________161\n_____________|_____________________________________|\n5'-CCA...CUUUC_____________________U_______________UUUCG...CGG-3'\n______________CUGA___GCGGACUGAUUGCA_ACA____GACACAAC\n______________||||___||:|||::||||||_|||____:|||||||\n______________GACU___CGUCUGGUUAACGU_UGU____UUGUGUUG\n3'-UUU...CACCA____UAG______________U___GUUG________UAGUG...UCA-5'\n_____________|_____________________________________|\n_____________102___________________________________71\n |
154 -- 160 |
72 -- 78 |
-36.4155 kcal/mol |
5.60666 kcal/mol |
13.5432 kcal/mol |
134 161@LB@ | |@LB@5'-CCA...CUUUC U UUUCG...CGG-3'@LB@ CUGA GCGGACUGAUUGCA ACA GACACAAC@LB@ |||| ||:|||::|||||| ||| :|||||||@LB@ GACU CGUCUGGUUAACGU UGU UUGUGUUG@LB@3'-UUU...CACCA UAG U GUUG UAGUG...UCA-5'@LB@ | |@LB@ 102 71@LB@@LB@@LB@Energy -16.58 kcal/mol@LB@Hybridization Energy -36.4155 kcal/mol@LB@Unfolding Energy - mRNA 5.60666 kcal/mol@LB@Unfolding Energy - sRNA 13.5432 kcal/mol@LB@@LB@Position - mRNA 135 -- 160@LB@Position - sRNA 72 -- 101@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 170 |
0.009347 |
0.1945 |
stm0477 |
acrR |
-17.70 |
0.042454 |
229 -- 246 |
74 -- 91 |
DNA-binding transcriptional repressor AcrR |
|
_____________228________________247\n_____________|__________________|\n5'-AAG...AGCGC__G_______________UCCUG...CGC-3'\n______________UG_AGACACGACAACACA\n______________||_|:||||:||||||||\n______________AC_UUUGUGUUGUUGUGU\n3'-UUU...GGUUA__G_______________UGUAG...UCA-5'\n_____________|__________________|\n_____________92_________________73\n |
240 -- 246 |
74 -- 80 |
-24.9092 kcal/mol |
3.16809 kcal/mol |
3.73631 kcal/mol |
228 247@LB@ | |@LB@5'-AAG...AGCGC G UCCUG...CGC-3'@LB@ UG AGACACGACAACACA@LB@ || |:||||:||||||||@LB@ AC UUUGUGUUGUUGUGU@LB@3'-UUU...GGUUA G UGUAG...UCA-5'@LB@ | |@LB@ 92 73@LB@@LB@@LB@Energy -17.70 kcal/mol@LB@Hybridization Energy -24.9092 kcal/mol@LB@Unfolding Energy - mRNA 3.16809 kcal/mol@LB@Unfolding Energy - sRNA 3.73631 kcal/mol@LB@@LB@Position - mRNA 229 -- 246@LB@Position - sRNA 74 -- 91@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 74 -- 80@LB@ |
| 175 |
0.009595 |
0.1945 |
stm0268 |
N/A |
-12.50 |
0.284574 |
64 -- 117 |
80 -- 130 |
type VI secretion protein |
|
_____________63__________________________________________________________118\n_____________|___________________________________________________________|\n5'-GUU...CCGGC__________AUAACA______A__________AU________A______U________CGUAU...GAC-3'\n______________AGGGUAG_CU______CGCUAC____GUUUGAA__UCGCGGAC_AAUU_C_GACGCAGC\n______________|||||||_||______||||||____||:||||__||||:|||_||||_|_:||:||:|\n______________UCCCAUC_GA______GCGAUG____CAGACUU__AGCGUCUG_UUAA_G_UUGUGUUG\n3'-UUU...CUUUU_______A______________GCAC_________________G____C_U________UUGUG...UCA-5'\n_____________|___________________________________________________________|\n_____________131_________________________________________________________79\n |
111 -- 117 |
80 -- 86 |
-48.3519 kcal/mol |
16.091 kcal/mol |
19.1381 kcal/mol |
63 118@LB@ | |@LB@5'-GUU...CCGGC AUAACA A AU A U CGUAU...GAC-3'@LB@ AGGGUAG CU CGCUAC GUUUGAA UCGCGGAC AAUU C GACGCAGC@LB@ ||||||| || |||||| ||:|||| ||||:||| |||| | :||:||:|@LB@ UCCCAUC GA GCGAUG CAGACUU AGCGUCUG UUAA G UUGUGUUG@LB@3'-UUU...CUUUU A GCAC G C U UUGUG...UCA-5'@LB@ | |@LB@ 131 79@LB@@LB@@LB@Energy -12.50 kcal/mol@LB@Hybridization Energy -48.3519 kcal/mol@LB@Unfolding Energy - mRNA 16.091 kcal/mol@LB@Unfolding Energy - sRNA 19.1381 kcal/mol@LB@@LB@Position - mRNA 64 -- 117@LB@Position - sRNA 80 -- 130@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 45 |
0.001635 |
0.1267 |
stm2351 |
hisP |
-13.82 |
0.180688 |
258 -- 282 |
115 -- 140 |
histidine and lysine/arginine/ornithine transport protein |
|
_____________257__________________________283\n_____________|____________________________|\n5'-UAC...GUCAU______CU____________________AGGCC...AUG-3'\n______________GAAGUG__GAAAGGGGUA___UCGCUGC\n______________||||||__:|||:|||||___|||||:|\n______________CUUCAC__UUUUUCCCAU___AGCGAUG\n3'-UUU...AUGUC__________________CAG_______GCACC...UCA-5'\n_____________|____________________________|\n_____________141__________________________114\n |
276 -- 282 |
115 -- 121 |
-29.6028 kcal/mol |
6.54228 kcal/mol |
8.52785 kcal/mol |
257 283@LB@ | |@LB@5'-UAC...GUCAU CU AGGCC...AUG-3'@LB@ GAAGUG GAAAGGGGUA UCGCUGC@LB@ |||||| :|||:||||| |||||:|@LB@ CUUCAC UUUUUCCCAU AGCGAUG@LB@3'-UUU...AUGUC CAG GCACC...UCA-5'@LB@ | |@LB@ 141 114@LB@@LB@@LB@Energy -13.82 kcal/mol@LB@Hybridization Energy -29.6028 kcal/mol@LB@Unfolding Energy - mRNA 6.54228 kcal/mol@LB@Unfolding Energy - sRNA 8.52785 kcal/mol@LB@@LB@Position - mRNA 258 -- 282@LB@Position - sRNA 115 -- 140@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 115 -- 121@LB@ |
| 90 |
0.004161 |
0.1596 |
stm1124 |
putA |
-17.89 |
0.039481 |
159 -- 201 |
125 -- 168 |
trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase |
|
_____________158______________________________________________202\n_____________|________________________________________________|\n5'-UAA...CGCUA____U___UUA________A_C____A_____________________UGGGA...UAA-3'\n______________ACUA_UGG___GCAGAUAG_G_GAAU__ACAGG_AGU___AGAGGGUA\n______________||||_|||___:||||:||_|_:|||__|||||_|||___|:||||||\n______________UGAU_ACC___UGUCUGUC_C_UUUA__UGUCC_UCA___UUUCCCAU\n3'-UUU...AUUAG___________________C_A____CA_____U___CUU________CAGAG...UCA-5'\n_____________|________________________________________________|\n_____________169______________________________________________124\n |
195 -- 201 |
125 -- 131 |
-33.9858 kcal/mol |
7.26317 kcal/mol |
8.4265 kcal/mol |
158 202@LB@ | |@LB@5'-UAA...CGCUA U UUA A C A UGGGA...UAA-3'@LB@ ACUA UGG GCAGAUAG G GAAU ACAGG AGU AGAGGGUA@LB@ |||| ||| :||||:|| | :||| ||||| ||| |:||||||@LB@ UGAU ACC UGUCUGUC C UUUA UGUCC UCA UUUCCCAU@LB@3'-UUU...AUUAG C A CA U CUU CAGAG...UCA-5'@LB@ | |@LB@ 169 124@LB@@LB@@LB@Energy -17.89 kcal/mol@LB@Hybridization Energy -33.9858 kcal/mol@LB@Unfolding Energy - mRNA 7.26317 kcal/mol@LB@Unfolding Energy - sRNA 8.4265 kcal/mol@LB@@LB@Position - mRNA 159 -- 201@LB@Position - sRNA 125 -- 168@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 125 -- 131@LB@ |
| 144 |
0.00736 |
0.182 |
stm4559 |
yjjG |
-11.80 |
0.356804 |
189 -- 218 |
128 -- 159 |
putative haloacid dehalogenase-like hydrolase |
|
_____________188_________________________________219\n_____________|___________________________________|\n5'-UUG...AUAAA_G_____A____U__________________CU__AUUUU...UCA-3'\n______________A_AGGCA_GGUG_AAUG_AU__GAAGUGGGA__GG\n______________|_||:||_|||:_||||_|:__||||||::|__||\n______________U_UCUGU_CCAU_UUAC_UG__CUUCACUUU__CC\n3'-UUU...AUACC_G_____C_________A__UC_________UU__CAUCA...UCA-5'\n_____________|___________________________________|\n_____________160_________________________________127\n |
208 -- 214 |
132 -- 138 |
-24.694 kcal/mol |
5.33554 kcal/mol |
7.83417 kcal/mol |
188 219@LB@ | |@LB@5'-UUG...AUAAA G A U CU AUUUU...UCA-3'@LB@ A AGGCA GGUG AAUG AU GAAGUGGGA GG@LB@ | ||:|| |||: |||| |: ||||||::| ||@LB@ U UCUGU CCAU UUAC UG CUUCACUUU CC@LB@3'-UUU...AUACC G C A UC UU CAUCA...UCA-5'@LB@ | |@LB@ 160 127@LB@@LB@@LB@Energy -11.80 kcal/mol@LB@Hybridization Energy -24.694 kcal/mol@LB@Unfolding Energy - mRNA 5.33554 kcal/mol@LB@Unfolding Energy - sRNA 7.83417 kcal/mol@LB@@LB@Position - mRNA 189 -- 218@LB@Position - sRNA 128 -- 159@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 132 -- 138@LB@ |
| 51 |
0.001912 |
0.1324 |
stm2692 |
N/A |
-10.31 |
0.546971 |
162 -- 173 |
130 -- 141 |
putative HlyD family secretion protein |
|
_____________161__________174\n_____________|____________|\n5'-GUU...CCGUC____________AUGAA...CGU-3'\n______________GGGAGUGGAAAA\n______________||:||||:||||\n______________CCUUCACUUUUU\n3'-UUU...CAUGU____________CCCAU...UCA-5'\n_____________|____________|\n_____________142__________129\n |
166 -- 172 |
131 -- 137 |
-15.3652 kcal/mol |
2.02429 kcal/mol |
2.83702 kcal/mol |
161 174@LB@ | |@LB@5'-GUU...CCGUC AUGAA...CGU-3'@LB@ GGGAGUGGAAAA@LB@ ||:||||:||||@LB@ CCUUCACUUUUU@LB@3'-UUU...CAUGU CCCAU...UCA-5'@LB@ | |@LB@ 142 129@LB@@LB@@LB@Energy -10.31 kcal/mol@LB@Hybridization Energy -15.3652 kcal/mol@LB@Unfolding Energy - mRNA 2.02429 kcal/mol@LB@Unfolding Energy - sRNA 2.83702 kcal/mol@LB@@LB@Position - mRNA 162 -- 173@LB@Position - sRNA 130 -- 141@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 131 -- 137@LB@ |
| 150 |
0.007945 |
0.1845 |
stm2555 |
glyA |
-15.42 |
0.100951 |
252 -- 282 |
137 -- 168 |
serine hydroxymethyltransferase |
|
_____________251_________________________________283\n_____________|___________________________________|\n5'-CAC...GGCAG________________AA________GUC______AGCAC...UCG-3'\n______________GCUAUGGA___GCAGG__AAA_GUAC___AGGAAG\n______________:|||||||___:||||__|||_||||___||||||\n______________UGAUACCU___UGUCC__UUU_CAUG___UCCUUC\n3'-UUU...AUUAG________GUC_____CA___A_____________ACUUU...UCA-5'\n_____________|___________________________________|\n_____________169_________________________________136\n |
253 -- 259 |
161 -- 167 |
-28.2568 kcal/mol |
5.17684 kcal/mol |
6.91101 kcal/mol |
251 283@LB@ | |@LB@5'-CAC...GGCAG AA GUC AGCAC...UCG-3'@LB@ GCUAUGGA GCAGG AAA GUAC AGGAAG@LB@ :||||||| :|||| ||| |||| ||||||@LB@ UGAUACCU UGUCC UUU CAUG UCCUUC@LB@3'-UUU...AUUAG GUC CA A ACUUU...UCA-5'@LB@ | |@LB@ 169 136@LB@@LB@@LB@Energy -15.42 kcal/mol@LB@Hybridization Energy -28.2568 kcal/mol@LB@Unfolding Energy - mRNA 5.17684 kcal/mol@LB@Unfolding Energy - sRNA 6.91101 kcal/mol@LB@@LB@Position - mRNA 252 -- 282@LB@Position - sRNA 137 -- 168@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 161 -- 167@LB@ |
| 11 |
0.0001804 |
0.05681 |
stm0959 |
lrp |
-12.80 |
0.257711 |
163 -- 181 |
139 -- 159 |
leucine-responsive transcriptional regulator |
|
_____________162_______________________________________________182\n_____________|_________________________________________________|\n5'-UGA...AGAGU________A_____GA________UAC______ACAAUAAUAAU_____AUAGC...AGC-3'\n______________CAGGCAGG_GUAGG_____AGGAA___AGAGAG___________GGUAG\n______________|||:||||_|||::_____|||||___|:|:||___________|||||\n______________GUCUGUCC_CAUUU_____UCCUU___UUUUUC___________CCAUC\n3'-UUU...UACCU______________ACAUG_____CAC______________________AGAGC...UCA-5'\n_____________|_________________________________________________|\n_____________160_______________________________________________138\n |
163 -- 169 |
153 -- 159 |
-28.6161 kcal/mol |
5.81197 kcal/mol |
10.0349 kcal/mol |
162 182@LB@ | |@LB@5'-UGA...AGAGU A GA UAC ACAAUAAUAAU AUAGC...AGC-3'@LB@ CAGGCAGG GUAGG AGGAA AGAGAG GGUAG@LB@ |||:|||| |||:: ||||| |:|:|| |||||@LB@ GUCUGUCC CAUUU UCCUU UUUUUC CCAUC@LB@3'-UUU...UACCU ACAUG CAC AGAGC...UCA-5'@LB@ | |@LB@ 160 138@LB@@LB@@LB@Energy -12.80 kcal/mol@LB@Hybridization Energy -28.6161 kcal/mol@LB@Unfolding Energy - mRNA 5.81197 kcal/mol@LB@Unfolding Energy - sRNA 10.0349 kcal/mol@LB@@LB@Position - mRNA 163 -- 181@LB@Position - sRNA 139 -- 159@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 153 -- 159@LB@ |
| 19 |
0.0004167 |
0.0781 |
stm0475 |
acrB |
-19.12 |
0.024591 |
69 -- 114 |
139 -- 185 |
aminoglycoside/multidrug transporter permease |
|
_____________68_______________________115\n_____________|________________________|\n5'-AAG...GUCCU____C_____U_____________AAUUA...CGC-3'\n______________GGCG_ACAGG_UAAA_GUACAGGA\n______________|:|:_|||||_||||_||||||||\n______________CUGU_UGUCC_AUUU_CAUGUCCU\n3'-UUU...GAUAC____C_____C____A________UCACU...UCA-5'\n_____________|________________________|\n_____________186______________________138\n |
108 -- 114 |
139 -- 145 |
-25.274 kcal/mol |
6.90525 kcal/mol |
3.69132 kcal/mol |
68 115@LB@ | |@LB@5'-AAG...GUCCU C U AAUUA...CGC-3'@LB@ GGCG ACAGG UAAA GUACAGGA@LB@ |:|: ||||| |||| ||||||||@LB@ CUGU UGUCC AUUU CAUGUCCU@LB@3'-UUU...GAUAC C C A UCACU...UCA-5'@LB@ | |@LB@ 186 138@LB@@LB@@LB@Energy -19.12 kcal/mol@LB@Hybridization Energy -25.274 kcal/mol@LB@Unfolding Energy - mRNA 6.90525 kcal/mol@LB@Unfolding Energy - sRNA 3.69132 kcal/mol@LB@@LB@Position - mRNA 69 -- 114@LB@Position - sRNA 139 -- 185@LB@Position Seed - mRNA 108 -- 114@LB@Position Seed - sRNA 139 -- 145@LB@ |
