154 |
0.008185 |
0.1845 |
stm3738 |
yigC |
-11.16 |
0.433331 |
228 -- 246 |
55 -- 74 |
similar to E. coli orf hypothetical protein (AAC76670.1); Blastp hit to AAC76670.1 (223 aa) 94% identity in aa 19 - 223 |
|
_____________227__________________247\n_____________|____________________|\n5'-UAA...ACCUC_____________AC_____AAAUG...UUA-3'\n______________GCA__UACAAUAA__CACAA\n______________|||__:||||:||__|||||\n______________CGU__GUGUUGUU__GUGUU\n3'-UUU...GUUAA___UU_______________GUAGU...UCA-5'\n_____________|____________________|\n_____________75___________________54\n |
27 -- 33 |
78 -- 84 |
-12.6647 kcal/mol |
0.985902 kcal/mol |
3.77104 kcal/mol |
227 247@LB@ | |@LB@5'-UAA...ACCUC AC AAAUG...UUA-3'@LB@ GCA UACAAUAA CACAA@LB@ ||| :||||:|| |||||@LB@ CGU GUGUUGUU GUGUU@LB@3'-UUU...GUUAA UU GUAGU...UCA-5'@LB@ | |@LB@ 75 54@LB@@LB@@LB@Energy -11.16 kcal/mol@LB@Hybridization Energy -12.6647 kcal/mol@LB@Unfolding Energy - mRNA 0.985902 kcal/mol@LB@Unfolding Energy - sRNA 3.77104 kcal/mol@LB@@LB@Position - mRNA 228 -- 246@LB@Position - sRNA 55 -- 74@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 78 -- 84@LB@ |
170 |
0.009347 |
0.1945 |
stm0477 |
acrR |
-17.70 |
0.042454 |
229 -- 246 |
74 -- 91 |
DNA-binding transcriptional repressor AcrR |
|
_____________228________________247\n_____________|__________________|\n5'-AAG...AGCGC__G_______________UCCUG...CGC-3'\n______________UG_AGACACGACAACACA\n______________||_|:||||:||||||||\n______________AC_UUUGUGUUGUUGUGU\n3'-UUU...GGUUA__G_______________UGUAG...UCA-5'\n_____________|__________________|\n_____________92_________________73\n |
240 -- 246 |
74 -- 80 |
-24.9092 kcal/mol |
3.16809 kcal/mol |
3.73631 kcal/mol |
228 247@LB@ | |@LB@5'-AAG...AGCGC G UCCUG...CGC-3'@LB@ UG AGACACGACAACACA@LB@ || |:||||:||||||||@LB@ AC UUUGUGUUGUUGUGU@LB@3'-UUU...GGUUA G UGUAG...UCA-5'@LB@ | |@LB@ 92 73@LB@@LB@@LB@Energy -17.70 kcal/mol@LB@Hybridization Energy -24.9092 kcal/mol@LB@Unfolding Energy - mRNA 3.16809 kcal/mol@LB@Unfolding Energy - sRNA 3.73631 kcal/mol@LB@@LB@Position - mRNA 229 -- 246@LB@Position - sRNA 74 -- 91@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 74 -- 80@LB@ |
132 |
0.006673 |
0.1774 |
stm2677 |
ffh |
-17.54 |
0.045291 |
232 -- 275 |
38 -- 86 |
4.5S-RNP protein |
|
_____________231_________________________________________________________________________________________________276\n_____________|___________________________________________________________________________________________________|\n5'-UAG...CAAAA_______UA__U_____CG____UU__CC__________A_A____A___A__G___UACG___C______CU____CC__U____________AA___GGCUU...AAG-3'\n______________ACGGGCA__GU__GUGU__ACAG__GA__AGUGAGAAAG_G_AG_C__GU_UA_CGU____UGA__CGCAG__CCAA__GU__GCAUAACAACA__GAC\n______________||:|:||__||__:|||__||||__||__|||||:||||_|_||_|__|:_||_|||____|||__|||||__||||__|:__:||:|||||||__:||\n______________UGUCUGU__CA__UACA__UGUC__CU__UCACUUUUUC_C_UC_G__CG_AU_GCA____ACU__GCGUC__GGUU__CG__UGUGUUGUUGU__UUG\n3'-UUU...AUACC_______CC__UU__________________________C_A__A_AG_____G___CCAG___UA_____U_____AA__UU___________G____UAGUG...UCA-5'\n_____________|___________________________________________________________________________________________________|\n_____________87__________________________________________________________________________________________________37\n |
110 -- 116 |
76 -- 82 |
-60.3799 kcal/mol |
23.7315 kcal/mol |
24.6218 kcal/mol |
231 276@LB@ | |@LB@5'-UAG...CAAAA UA U CG UU CC A A A A G UACG C CU CC U AA GGCUU...AAG-3'@LB@ ACGGGCA GU GUGU ACAG GA AGUGAGAAAG G AG C GU UA CGU UGA CGCAG CCAA GU GCAUAACAACA GAC@LB@ ||:|:|| || :||| |||| || |||||:|||| | || | |: || ||| ||| ||||| |||| |: :||:||||||| :||@LB@ UGUCUGU CA UACA UGUC CU UCACUUUUUC C UC G CG AU GCA ACU GCGUC GGUU CG UGUGUUGUUGU UUG@LB@3'-UUU...AUACC CC UU C A A AG G CCAG UA U AA UU G UAGUG...UCA-5'@LB@ | |@LB@ 87 37@LB@@LB@@LB@Energy -17.54 kcal/mol@LB@Hybridization Energy -60.3799 kcal/mol@LB@Unfolding Energy - mRNA 23.7315 kcal/mol@LB@Unfolding Energy - sRNA 24.6218 kcal/mol@LB@@LB@Position - mRNA 232 -- 275@LB@Position - sRNA 38 -- 86@LB@Position Seed - mRNA 110 -- 116@LB@Position Seed - sRNA 76 -- 82@LB@ |
139 |
0.007115 |
0.182 |
stm0826 |
ybiN |
-18.61 |
0.029895 |
232 -- 282 |
36 -- 90 |
23S rRNA (adenine(1618)-N(6))-methyltransferase |
|
_____________231___________________283\n_____________|_____________________|\n5'-CUC...GAGCC_____AACGAGCG________AAUUC...UUC-3'\n______________GAUCA________AGGCAGGG\n______________:||||________||:|||||\n______________UUAGU________UCUGUCCC\n3'-UUU...UGUAA_____GAUACCUG________AUUUA...UCA-5'\n_____________|_____________________|\n_____________91____________________35\n |
124 -- 130 |
152 -- 158 |
-17.5433 kcal/mol |
4.82059 kcal/mol |
3.53427 kcal/mol |
231 283@LB@ | |@LB@5'-CUC...GAGCC AACGAGCG AAUUC...UUC-3'@LB@ GAUCA AGGCAGGG@LB@ :|||| ||:|||||@LB@ UUAGU UCUGUCCC@LB@3'-UUU...UGUAA GAUACCUG AUUUA...UCA-5'@LB@ | |@LB@ 91 35@LB@@LB@@LB@Energy -18.61 kcal/mol@LB@Hybridization Energy -17.5433 kcal/mol@LB@Unfolding Energy - mRNA 4.82059 kcal/mol@LB@Unfolding Energy - sRNA 3.53427 kcal/mol@LB@@LB@Position - mRNA 232 -- 282@LB@Position - sRNA 36 -- 90@LB@Position Seed - mRNA 124 -- 130@LB@Position Seed - sRNA 152 -- 158@LB@ |
118 |
0.005761 |
0.1738 |
stm1840 |
yobG |
-17.14 |
0.052758 |
234 -- 267 |
153 -- 188 |
PhoP regulon feedback inhibition protein MgrB |
|
_____________233____________________________________________________________________________________268\n_____________|______________________________________________________________________________________|\n5'-ACA...AGAGU___________AUUUCGAU____C_U_____GC________GGUA______U___U_____UGU________GUGUU_________GUGCG...AAU-3'\n______________GGAGUGAAAAA________GGGU_G_UCUCG__AUCGUGGU_______GUA_GCC_GUUGC___GGGCGCAG_____UAAUAUCAU\n______________|:|||||||||________||||_|_|||||__|:||||||_______|:|_:||_:||||___:::|:||:_____:||:||||:\n______________CUUCACUUUUU________CCCA_C_AGAGC__UGGCACCA_______CGU_UGG_UAACG___UUUGUGUU_____GUUGUAGUG\n3'-UUU...AUGUC_______________________U_______GA________GACUUAG___C___U________________GUUGU_________UUGGC...UCA-5'\n_____________|______________________________________________________________________________________|\n_____________189____________________________________________________________________________________152\n |
274 -- 280 |
67 -- 73 |
-62.0847 kcal/mol |
28.922 kcal/mol |
22.0106 kcal/mol |
233 268@LB@ | |@LB@5'-ACA...AGAGU AUUUCGAU C U GC GGUA U U UGU GUGUU GUGCG...AAU-3'@LB@ GGAGUGAAAAA GGGU G UCUCG AUCGUGGU GUA GCC GUUGC GGGCGCAG UAAUAUCAU@LB@ |:||||||||| |||| | ||||| |:|||||| |:| :|| :|||| :::|:||: :||:||||:@LB@ CUUCACUUUUU CCCA C AGAGC UGGCACCA CGU UGG UAACG UUUGUGUU GUUGUAGUG@LB@3'-UUU...AUGUC U GA GACUUAG C U GUUGU UUGGC...UCA-5'@LB@ | |@LB@ 189 152@LB@@LB@@LB@Energy -17.14 kcal/mol@LB@Hybridization Energy -62.0847 kcal/mol@LB@Unfolding Energy - mRNA 28.922 kcal/mol@LB@Unfolding Energy - sRNA 22.0106 kcal/mol@LB@@LB@Position - mRNA 234 -- 267@LB@Position - sRNA 153 -- 188@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 67 -- 73@LB@ |
60 |
0.002585 |
0.1534 |
stm0758 |
ybgR |
-11.90 |
0.345594 |
235 -- 293 |
32 -- 91 |
cation transporter |
|
_____________234_________________________294\n_____________|___________________________|\n5'-GGU...ACACC___CG___G__________U_______CUGCU...UCC-3'\n______________UGC__AAA_AUAAUAAUGC__CGUCGC\n______________|||__|||_|:||:||::|__|:||:|\n______________ACG__UUU_UGUUGUUGUG__GUAGUG\n3'-UUU...GGUUA________G__________UU______UUGGC...UCA-5'\n_____________|___________________________|\n_____________92__________________________31\n |
247 -- 253 |
75 -- 81 |
-19.147 kcal/mol |
4.2306 kcal/mol |
5.6854 kcal/mol |
234 294@LB@ | |@LB@5'-GGU...ACACC CG G U CUGCU...UCC-3'@LB@ UGC AAA AUAAUAAUGC CGUCGC@LB@ ||| ||| |:||:||::| |:||:|@LB@ ACG UUU UGUUGUUGUG GUAGUG@LB@3'-UUU...GGUUA G UU UUGGC...UCA-5'@LB@ | |@LB@ 92 31@LB@@LB@@LB@Energy -11.90 kcal/mol@LB@Hybridization Energy -19.147 kcal/mol@LB@Unfolding Energy - mRNA 4.2306 kcal/mol@LB@Unfolding Energy - sRNA 5.6854 kcal/mol@LB@@LB@Position - mRNA 235 -- 293@LB@Position - sRNA 32 -- 91@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 75 -- 81@LB@ |
158 |
0.00827 |
0.1845 |
stm1712 |
acnA |
-14.47 |
0.143385 |
236 -- 294 |
48 -- 104 |
aconitate hydratase 1 |
|
_____________235_________________295\n_____________|___________________|\n5'-AUC...CAACC_______G_AU________CGCAA...GCG-3'\n______________CUGUGGA_A__CAGGGUAA\n______________||:||||_|__||||||||\n______________GAUACCU_U__GUCCCAUU\n3'-UUU...UUAGU_______G_CU________UACAU...UCA-5'\n_____________|___________________|\n_____________105_________________47\n |
167 -- 173 |
149 -- 155 |
-24.0869 kcal/mol |
10.3759 kcal/mol |
4.11594 kcal/mol |
235 295@LB@ | |@LB@5'-AUC...CAACC G AU CGCAA...GCG-3'@LB@ CUGUGGA A CAGGGUAA@LB@ ||:|||| | ||||||||@LB@ GAUACCU U GUCCCAUU@LB@3'-UUU...UUAGU G CU UACAU...UCA-5'@LB@ | |@LB@ 105 47@LB@@LB@@LB@Energy -14.47 kcal/mol@LB@Hybridization Energy -24.0869 kcal/mol@LB@Unfolding Energy - mRNA 10.3759 kcal/mol@LB@Unfolding Energy - sRNA 4.11594 kcal/mol@LB@@LB@Position - mRNA 236 -- 294@LB@Position - sRNA 48 -- 104@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 149 -- 155@LB@ |
196 |
0.01089 |
0.197 |
stm3904 |
ilvD |
-14.14 |
0.161583 |
237 -- 253 |
179 -- 194 |
dihydroxy-acid dehydratase |
|
_____________236___________254\n_____________|_____________|\n5'-CGA...UGAAG___AA________AGUAA...GCA-3'\n______________GGA__AGAUGGGG\n______________|||__|||::|||\n______________CCU__UCUGUCCC\n3'-UUU...UGAUA___G_________AUUUA...UCA-5'\n_____________|_____________|\n_____________195___________178\n |
182 -- 188 |
152 -- 158 |
-15.6614 kcal/mol |
1.17371 kcal/mol |
3.10307 kcal/mol |
236 254@LB@ | |@LB@5'-CGA...UGAAG AA AGUAA...GCA-3'@LB@ GGA AGAUGGGG@LB@ ||| |||::|||@LB@ CCU UCUGUCCC@LB@3'-UUU...UGAUA G AUUUA...UCA-5'@LB@ | |@LB@ 195 178@LB@@LB@@LB@Energy -14.14 kcal/mol@LB@Hybridization Energy -15.6614 kcal/mol@LB@Unfolding Energy - mRNA 1.17371 kcal/mol@LB@Unfolding Energy - sRNA 3.10307 kcal/mol@LB@@LB@Position - mRNA 237 -- 253@LB@Position - sRNA 179 -- 194@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 152 -- 158@LB@ |
164 |
0.008796 |
0.191 |
stm2932 |
ygbE |
-13.54 |
0.199482 |
240 -- 279 |
44 -- 82 |
putative inner membrane protein |
|
_____________239________________280\n_____________|__________________|\n5'-CGC...GCGUA__________________UUUCA...CCA-3'\n______________AUAGC__CAUAACAUUAC\n______________|:|:|__||:|||||:||\n______________UGUUG__GUGUUGUAGUG\n3'-UUU...GUUUG_____UU___________UUGGC...UCA-5'\n_____________|__________________|\n_____________83_________________43\n |
250 -- 256 |
67 -- 73 |
-14.8194 kcal/mol |
1.59581 kcal/mol |
5.25507 kcal/mol |
239 280@LB@ | |@LB@5'-CGC...GCGUA UUUCA...CCA-3'@LB@ AUAGC CAUAACAUUAC@LB@ |:|:| ||:|||||:||@LB@ UGUUG GUGUUGUAGUG@LB@3'-UUU...GUUUG UU UUGGC...UCA-5'@LB@ | |@LB@ 83 43@LB@@LB@@LB@Energy -13.54 kcal/mol@LB@Hybridization Energy -14.8194 kcal/mol@LB@Unfolding Energy - mRNA 1.59581 kcal/mol@LB@Unfolding Energy - sRNA 5.25507 kcal/mol@LB@@LB@Position - mRNA 240 -- 279@LB@Position - sRNA 44 -- 82@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 67 -- 73@LB@ |
145 |
0.007435 |
0.1826 |
stm1822 |
yoaB |
-15.17 |
0.110813 |
243 -- 269 |
162 -- 185 |
similar to E. coli orf hypothetical protein (AAC74879.1); Blastp hit to AAC74879.1 (130 aa) 92% identity in aa 17 - 130 |
|
_____________242______________________270\n_____________|________________________|\n5'-GUG...AUUUG___AG_____UAU_U_________AAGGC...CCG-3'\n______________CAC___GGAU___G_CAGGGUAGA\n______________|||___|||:___|_|||||||:|\n______________GUG___CCUG___C_GUCCCAUUU\n3'-UUU...AAUUA___AUA____U___U_________ACAUG...UCA-5'\n_____________|________________________|\n_____________186______________________161\n |
106 -- 112 |
148 -- 154 |
-19.875 kcal/mol |
5.9246 kcal/mol |
4.20228 kcal/mol |
242 270@LB@ | |@LB@5'-GUG...AUUUG AG UAU U AAGGC...CCG-3'@LB@ CAC GGAU G CAGGGUAGA@LB@ ||| |||: | |||||||:|@LB@ GUG CCUG C GUCCCAUUU@LB@3'-UUU...AAUUA AUA U U ACAUG...UCA-5'@LB@ | |@LB@ 186 161@LB@@LB@@LB@Energy -15.17 kcal/mol@LB@Hybridization Energy -19.875 kcal/mol@LB@Unfolding Energy - mRNA 5.9246 kcal/mol@LB@Unfolding Energy - sRNA 4.20228 kcal/mol@LB@@LB@Position - mRNA 243 -- 269@LB@Position - sRNA 162 -- 185@LB@Position Seed - mRNA 106 -- 112@LB@Position Seed - sRNA 148 -- 154@LB@ |